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source: palm/trunk/SCRIPTS/palmbuild @ 3545

Last change on this file since 3545 was 3534, checked in by raasch, 6 years ago
inifor integrated in build mechanism, some bugfixes in inifor to avoid compile time errors, batch_scp for sending back the job protocol file is called via login-node if a login-node has been set in the config-file, ssh-calls rearranged to avoid output of system/user-profile messages
Property svn:executable set to ``* Property svn:keywords set to `Id Rev`
File size: 36.2 KB

Line
1	#!/bin/bash
2
3	# palmbuild - script for compiling the PALM code and its utility programs
4
5	#------------------------------------------------------------------------------#
6	# This file is part of the PALM model system.
7	#
8	# PALM is free software: you can redistribute it and/or modify it under the terms
9	# of the GNU General Public License as published by the Free Software Foundation,
10	# either version 3 of the License, or (at your option) any later version.
11	#
12	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
13	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
14	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
15	#
16	# You should have received a copy of the GNU General Public License along with
17	# PALM. If not, see <http://www.gnu.org/licenses/>.
18	#
19	# Copyright 2017-2018 Leibniz Universitaet Hannover
20	#------------------------------------------------------------------------------#
21	#
22	# Current revisions:
23	# ------------------
24	#
25	#
26	# Former revisions:
27	# -----------------
28	# $Id: palmbuild 3534 2018-11-19 15:35:16Z gronemeier $
29	# build of inifor added,
30	# ssh-calls rearranged to avoid output of system/user-profile messages
31	#
32	# 3523 2018-11-13 16:09:31Z suehring
33	# Enable compilation of post-processing tool for surface output - interface
34	# for posix conform sytemcalls is implemented.
35	#
36	# 3499 2018-11-07 10:55:15Z suehring
37	# Temporarily avoid compilation of post-processing tool for surface output
38	# until a workaround for compiler-specific intrinsic functions is found.
39	#
40	# 3494 2018-11-06 14:51:27Z suehring
41	# Add tool for surface-output post-processing
42	#
43	# 3455 2018-10-30 14:12:31Z raasch
44	# options -h and -d renamed -c and -r, respectively
45	#
46	# 3312 2018-10-06 14:15:46Z knoop
47	# "host identifier" in header output renamed "config. identifier",
48	# host_configuration renamed configuration_identifier,
49	# jobname renamed run_identifier
50	# header output of PALM code revision,
51	# options -m, -s, and -S removed
52	#
53	# 3210 2018-08-28 07:31:13Z sward
54	# Bugfix: agent_preprocessing stays in MAKE_DEPOSITORY after compilation
55	#
56	# 3208 2018-08-27 13:10:50Z sward
57	# Added building of agent_preprocessing
58	#
59	# 3033 2018-05-23 15:26:19Z raasch
60	# "fname" renamed to "jobname"
61	#
62	# 2718 2018-01-02 08:49:38Z maronga
63	# Corrected "Former revisions" section
64	#
65	# 2696 2017-12-14 17:12:51Z kanani
66	# Change in file header (GPL part)
67	#
68	# 2566 2017-10-20 08:50:47Z raasch
69	# informative messages switched of almost completely in silent mode
70	# two header blocks merged into one
71	#
72	# 2506 2017-09-29 08:30:37Z raasch
73	# option -V added to check for an existing SOURCES_FOR_RUN_... folder
74	# host configuration added to SOURCES_FOR_RUN_... folder name
75	# SOURCES_FOR_RUN_... folder is deleted in case of compilation errors
76	# host_identifier renamed host_configuration
77	#
78	# 2500 2017-09-25 11:10:03Z raasch
79	# bugfix for r2492
80	#
81	# 2492 2017-09-21 14:18:48Z raasch
82	# ask for compilation, if SOURCES_FOR_RUN_... exists
83	#
84	# 2487 2017-09-21 11:30:10Z raasch
85	# bugfix: abort in case of compiling/linking errors in silent mode
86	#
87	# 2422 2017-09-08 08:25:41Z raasch
88	# initial revision
89	#
90	#------------------------------------------------------------------------------#
91	# palmbuild - script for compiling the PALM code and its utility programs
92	#
93	# Procedure to compile code on local and remote hosts using the
94	# make-mechanism. The source code must be provided on the local host.
95	#
96	# @note This script does not work on MAC OS
97	#------------------------------------------------------------------------------#
98
99
100	# VARIABLE DECLARATIONS + DEFAULT VALUES
101	calltime=""
102	column1=""
103	column2=""
104	configuration_identifier=default
105	global_revision=""
106	locat=normal
107	makefile=""
108	make_options=""
109	module_commands=""
110	program_name=palm
111	remote_ip=""
112	silent=false
113	ssh_key=""
114	suf=f90
115	use_existing_sources_folder=false
116	version="palmbuild 1.0 Rev$Rev: 3534 $"
117	working_directory=`pwd`
118
119
120	# ERROR HANDLING IN CASE OF EXIT
121	trap 'rm -rf ${source_path}/${configuration_identifier}_last_make_protocol
122	if [[ $locat != normal && $locat != control_c ]]
123	then
124	printf "\n\n+++ palmbuild crashed \n\n"
125	exit 1
126	elif [[ $locat != normal ]]
127	then
128	printf "\n+++ palmbuild killed by \"^C\" \n\n"
129	exit 2
130	else
131	if [[ $silent = false ]]
132	then
133	printf "\n --> palmbuild finished\n\n"
134	fi
135	exit 0
136	fi' exit
137
138
139	# ACTIONS IN CASE OF TERMINAL-BREAK (CONTROL-C):
140	trap 'locat=control_c
141	exit 1
142	' 2
143
144
145
146	# READ SHELLSCRIPT-OPTIONS
147	while getopts :c:r:uvV option
148	do
149	case $option in
150	(c) configuration_identifier=$OPTARG;;
151	(r) run_identifier=$OPTARG;;
152	(v) silent=true;;
153	(V) use_existing_sources_folder=true;;
154	(\?) printf "\n +++ unknown option $OPTARG \n";
155	locat=parameter; exit;;
156	esac
157	done
158
159
160	# BUILD THE CONFIGURATION-FILE NAME AND THE SOURCES_FOR_RUN-FOLDER NAME
161	config_file=.palm.config.$configuration_identifier
162	sources_for_run_catalog=SOURCES_FOR_RUN_${configuration_identifier}_$run_identifier
163
164
165	# CHECK, IF CONFIGURATION-FILE EXISTS
166	if [[ ! -f $config_file ]]
167	then
168	printf "\n +++ configuration file: "
169	printf "\n $config_file"
170	printf "\n does not exist"
171	locat=configuration; exit
172	fi
173
174
175	# ### is this really required?
176	config_file=$PWD/$config_file
177
178
179	# READ VARIABLE SETTINGS FROM CONFIG FILE LINE BY LINE
180	while read line
181	do
182
183	# FIRST REPLACE ENVIRONMENT-VARIABLES BY THEIR RESPECTIVE VALUES
184	eval line=\"$line\"
185
186
187	# INTERPRET THE LINE
188	if [[ "$(echo $line)" = "" ]]
189	then
190
191	# EMPTY LINE, NO ACTION
192	continue
193
194	elif [[ "$(echo $line \| cut -c1)" = "#" ]]
195	then
196
197	# LINE IS A COMMENT LINE
198	continue
199
200	elif [[ "$(echo $line \| cut -c1)" = "%" ]]
201	then
202
203	# LINE DEFINES AN ENVIRONMENT-VARIABLE
204	var=`echo $line \| cut -d" " -s -f1 \| cut -c2-`
205	value=`echo $line \| cut -d" " -s -f2-`
206
207	# REPLACE ":" BY " " IN COMPILER- CPP- OR LINKER-OPTIONS,
208	# "::" IS REPLACED BY ":".
209	#value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
210
211
212	# VALUE FROM THE CONFIGURATION-FILE IS ASSIGNED TO THE
213	# ENVIRONMENT-VARIABLE, BUT ONLY IF NO VALUE HAS BEEN ALREADY
214	# ASSIGNED WITHIN THIS SCRIPT (E.G. BY SCRIPT-OPTIONS).
215	# NON-ASSIGNED VARIABLES HAVE VALUE "" OR 0 (IN CASE OF INTEGER).
216	# HENCE THE GENERAL RULE IS: SCRIPT-OPTION OVERWRITES THE
217	# CONFIGURATION-FILE.
218	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
219	then
220	eval export $var="\$value"
221
222	# TERMINAL OUTPUT OF ENVIRONMENT-VARIABLES, IF TRACEBACK IS SWITCHED on
223	if [[ $do_trace = true ]]
224	then
225	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
226	fi
227	fi
228
229	else
230
231	# SKIP ALL OTHER LINES
232	continue
233
234	fi
235
236	done < $config_file
237
238
239	# CHECK, IF THE BASE DIRECTORY PATH HAS BEEN GIVEN
240	if [[ "$base_directory" = "" ]]
241	then
242	printf "\n +++ no base directory found in configuration file"
243	locat=config_file; exit
244	else
245	if [[ ! -d $base_directory ]]
246	then
247	printf "\n\n +++ base directory \"$base_directory\" "
248	printf "\n does not exist"
249	locat=source_path; exit
250	fi
251	fi
252
253
254	# CHECK SOURCE-CODE PATH
255	if [[ "$source_path" = "" ]]
256	then
257	printf "\n +++ no source path found in configuration file"
258	locat=config_file; exit
259	else
260	if [[ ! -d $source_path ]]
261	then
262	printf "\n\n +++ source path \"$source_path\" "
263	printf "\n does not exist"
264	locat=source_path; exit
265	fi
266	fi
267
268
269	# CHECK MAKEFILE
270	makefile=$source_path/Makefile
271	if [[ ! -f $makefile ]]
272	then
273	printf "\n +++ makefile: "
274	printf "\n $makefile"
275	printf "\n does not exist"
276	locat=makefile; exit
277	fi
278
279
280	# CHECK COMPILERNAME
281	if [[ "$compiler_name" = "" ]]
282	then
283	printf "\n +++ no compiler name found in configuration file"
284	locat=config_file; exit
285	fi
286
287
288	# CHECK SERIAL COMPILERNAME
289	if [[ "$compiler_name_ser" = "" ]]
290	then
291	printf "\n +++ no compiler name for serial compilation in configuration file"
292	locat=config_file; exit
293	fi
294
295
296	# DETERMINE SSH-KEY TO BE USED
297	if [[ "$ssh_key" != "" ]]
298	then
299	ssh_key="-i $HOME/.ssh/`echo $line \| cut -d" " -s -f2`"
300	fi
301
302
303	#CHECK CPP-OPTIONS
304	if [[ "$cpp_options" = "" ]]
305	then
306	printf "\n +++ WARNING: no cpp-options found in configuration file"
307	fi
308
309
310	# CHECK SETTINGS IN CASE OF COMPILING ON REMOTE MACHINE
311	if [[ "$remote_ip" != "" ]]
312	then
313
314	if [[ "$remote_username" = "" ]]
315	then
316	printf "\n +++ no user name given in configuration file"
317	locat=config_file; exit
318	fi
319
320	# GET SOURCE AND DEPOSITORY PATH ON THE REMOTE MACHINE WITHOUT EVALUATING
321	# THE $
322	# IF NOT GIVEN, USE THE LOCAL SOURCE AND DEPOSITORY PATH
323	line=`grep %remote_source_path $config_file`
324	if [[ "$line" != "" ]]
325	then
326	remote_source_path=`echo $line \| cut -d" " -s -f2`
327	else
328	line=`grep %source_path $config_file`
329	remote_source_path=`echo $line \| cut -d" " -s -f2`
330	fi
331
332	line=`grep %base_directory $config_file`
333	make_depository=`echo $line \| cut -d" " -s -f2`/MAKE_DEPOSITORY_${configuration_identifier}
334
335	else
336
337	make_depository=${base_directory}/MAKE_DEPOSITORY_${configuration_identifier}
338
339	fi
340
341
342	# GET THE GLOBAL REVISION-NUMBER OF THE SVN-REPOSITORY
343	global_revision=`svnversion $source_path 2>/dev/null`
344	global_revision="Rev: $global_revision"
345
346
347	# HEADER-OUTPUT (PART1: MESSAGES CONCERNING THE LOCAL HOST)
348	if [[ $silent = false ]]
349	then
350	calltime=$(date)
351	printf "\n"
352	printf "#------------------------------------------------------------------------# \n"
353	printf "\| %-40s%30s \| \n" "$version" "$calltime"
354	printf "\| %-40s%30s \| \n" "PALM code $global_revision" " "
355	printf "\| \| \n"
356	printf "\| %-13s%-57s \| \n" "called on:" "$(hostname) (IP:$local_ip)"
357	column2=$(echo $config_file \| cut -c1-57 )
358	printf "\| %-13s%-57s \| \n" "config file:" "$column2"
359	line=$(echo "$config_file" \| cut -c58-)
360	while [[ "$line" != "" ]]
361	do
362	column1=""
363	column2=$(echo $line \| cut -c1-57 )
364	printf "\| %-13s%-57s \| \n" "$column1" "$column2"
365	line=$(echo "$line" \| cut -c58-)
366	done
367	column2=$(echo $makefile \| cut -c1-57 )
368	printf "\| %-13s%-57s \| \n" "makefile:" "$column2"
369	line=$(echo "$makefile" \| cut -c58-)
370	while [[ "$line" != "" ]]
371	do
372	column1=""
373	column2=$(echo $line \| cut -c1-57 )
374	printf "\| %-13s%-57s \| \n" "$column1" "$column2"
375	line=$(echo "$line" \| cut -c58-)
376	done
377	column2=$(echo $source_path \| cut -c1-57 )
378	printf "\| %-13s%-57s \| \n" "source path:" "$column2"
379	line=$(echo "$source_path" \| cut -c58-)
380	while [[ "$line" != "" ]]
381	do
382	column1=""
383	column2=$(echo $line \| cut -c1-57 )
384	printf "\| %-13s%-57s \| \n" "$column1" "$column2"
385	line=$(echo "$line" \| cut -c58-)
386	done
387	printf "\| \| \n"
388
389	if [[ "$remote_ip" != "" ]]
390	then
391	column2="$configuration_identifier"
392	printf "\| %-20s%-50s \| \n" "config. identifier:" "$column2"
393	column2=$(echo "$make_depository" \| cut -c1-50 )
394	printf "\| %-20s%-50s \| \n" "remote depository:" "$column2"
395	else
396	column2="$configuration_identifier"
397	printf "\| %-20s%-50s \| \n" "config. identifier:" "$column2"
398	column2=$(echo "$make_depository" \| cut -c1-50 )
399	printf "\| %-20s%-50s \| \n" "local depository:" "$column2"
400	fi
401	line=$(echo "$make_depository" \| cut -c51-)
402	while [[ "$line" != "" ]]
403	do
404	column1=""
405	column2=$(echo "$line" \| cut -c1-50 )
406	printf "\| %-20s%-50s \| \n" "$column1" "$column2"
407	line=$(echo "$line" \| cut -c51-)
408	done
409
410	if [[ "$remote_ip" != "" ]]
411	then
412	printf "\| %-20s%-50s \| \n" "remote username:" "$remote_username"
413	printf "\| %-20s%-50s \| \n" "remote address:" "$remote_ip"
414	else
415	printf "\| %-20s%-50s \| \n" "username:" "$local_username"
416	printf "\| %-20s%-50s \| \n" "address:" "$local_ip"
417	fi
418
419	printf "\| %-20s%-50s \| \n" "compiler:" "$compiler_name"
420	printf "\| %-20s%-50s \| \n" "serial compiler:" "$compiler_name_ser"
421
422	if [[ "$make_options" != "" ]]
423	then
424	printf "\| %-20s%-50s \| \n" "make options:" "$make_options"
425	fi
426	column2=$(echo "$cpp_options" \| cut -c1-50 )
427	printf "\| %-20s%-50s \| \n" "cpp options:" "$column2"
428	line=$(echo "$cpp_options" \| cut -c51-)
429	while [[ "$line" != "" ]]
430	do
431	column1=""
432	column2=$(echo "$line" \| cut -c1-50 )
433	printf "\| %-20s%-50s \| \n" "$column1" "$column2"
434	line=$(echo "$line" \| cut -c51-)
435	done
436	column2=$(echo "$compiler_options" \| cut -c1-50 )
437	printf "\| %-20s%-50s \| \n" "compiler options:" "$column2"
438	line=$(echo "$compiler_options" \| cut -c51-)
439	while [[ "$line" != "" ]]
440	do
441	column1=""
442	column2=$(echo "$line" \| cut -c1-50 )
443	printf "\| %-20s%-50s \| \n" "$column1" "$column2"
444	line=$(echo "$line" \| cut -c51-)
445	done
446	column2=$(echo "$linker_options" \| cut -c1-50 )
447	printf "\| %-20s%-50s \| \n" "linker options:" "$column2"
448	line=$(echo "$linker_options" \| cut -c51-)
449	while [[ "$line" != "" ]]
450	do
451	column1=""
452	column2=$(echo "$line" \| cut -c1-50 )
453	printf "\| %-20s%-50s \| \n" "$column1" "$column2"
454	line=$(echo "$line" \| cut -c51-)
455	done
456	if [[ "$login_init_cmd" != "" ]]
457	then
458	column2=$(echo "$login_init_cmd" \| cut -c1-50 )
459	printf "\| %-20s%-50s \| \n" "login init command:" "$column2"
460	line=$(echo "$login_init_cmd" \| cut -c51-)
461	while [[ "$line" != "" ]]
462	do
463	column1=""
464	column2=$(echo "$line" \| cut -c1-50 )
465	printf "\| %-20s%-50s \| \n" "$column1" "$column2"
466	line=$(echo "$line" \| cut -c51-)
467	done
468	fi
469	if [[ "$module_commands" != "" ]]
470	then
471	column2=$(echo "$module_commands" \| cut -c1-50 )
472	printf "\| %-20s%-50s \| \n" "module command(s):" "$column2"
473	line=$(echo "$module_commands" \| cut -c51-)
474	while [[ "$line" != "" ]]
475	do
476	column1=""
477	column2=$(echo "$line" \| cut -c1-50 )
478	printf "\| %-20s%-50s \| \n" "$column1" "$column2"
479	line=$(echo "$line" \| cut -c51-)
480	done
481	fi
482	printf "#------------------------------------------------------------------------# \n"
483
484	answer=dummy
485	printf "\n"
486	while [[ "$answer" != y && "$answer" != Y && "$answer" != c && "$answer" != C && "$answer" != s && "$answer" != S && "$answer" != a && "$answer" != A ]]
487	do
488	printf " >>> continue (y(es)/c(ontinue)/a(bort)) ? "
489	read answer
490	done
491	if [[ $answer = a \|\| $answer = A ]]
492	then
493	locat=user_abort; exit
494	fi
495	if [[ $answer = c \|\| $answer = C ]]
496	then
497	silent=true
498	fi
499	fi
500
501
502	# TAR THE SOURCES AND MAKEFILES
503	# UTILITIES ARE TEMPORARILY COPIED TO THE SOURCE DIRECTORY IN ORDER TO TAR
504	# THEM TOO
505	if [[ $silent = false ]]
506	then
507	printf "\n\n *** tar of makefile and source files in"
508	printf "\n $source_path\n"
509	fi
510	cd $source_path
511	cp -p ../UTIL/combine_plot_fields.f90 .
512	cp -p ../UTIL/compare_palm_logs.f90 .
513	cp -p ../UTIL/agent_preprocessing/agent_preprocessing.f90 .
514	cp -p ../UTIL/surface_output_processing/surface_output_to_vtk.f90 .
515	cp -p ../UTIL/inifor/src/inifor*f90 .
516	cp -p ../UTIL/Makefile_utilities .
517	tar -cf ${program_name}_sources.tar Makefile* *.$suf
518	rm combine_plot_fields.f90 compare_palm_logs.f90 agent_preprocessing.f90 Makefile_utilities surface_output_to_vtk.f90 inifor*f90
519
520
521	# MAKE ON REMOTE HOST
522	if [[ "$remote_ip" != "" ]]
523	then
524
525	# NEXT IS THE BRANCH FOR CREATING THE MAKE_DEPOSITORY_...
526	if [[ "$run_identifier" = "" ]]
527	then
528
529	# COPY CURRENT SOURCE CODE TO SOURCE-CODE DIRECTORY ON THE REMOTE HOST
530	# CREATE THIS DIRECTORY, IF IT DOES NOT EXIST
531	if [[ $silent = false ]]
532	then
533	echo " "
534	echo " *** copying \"${program_name}_sources.tar\" to \"${remote_ip}:${make_depository}/\" "
535	### echo "[[ ! -d ${make_depository} ]] && (echo \" *** ${make_depository} will be created\"; mkdir -p ${make_depository})" \| ssh -q $ssh_key ${remote_username}@${remote_ip} 2>&1
536	ssh -q $ssh_key ${remote_username}@${remote_ip} "[[ ! -d ${make_depository} ]] && (echo \" *** ${make_depository} will be created\"; mkdir -p ${make_depository})" 2>&1
537	scp $ssh_key ${source_path}/${program_name}_sources.tar ${remote_username}@${remote_ip}:${make_depository}/${program_name}_sources.tar
538	else
539	### echo "[[ ! -d ${make_depository} ]] && mkdir -p ${make_depository}" \| ssh -q $ssh_key ${remote_username}@${remote_ip} 2>&1
540	ssh -q $ssh_key ${remote_username}@${remote_ip} "[[ ! -d ${make_depository} ]] && mkdir -p ${make_depository}" 2>&1
541	scp $ssh_key ${source_path}/${program_name}_sources.tar ${remote_username}@${remote_ip}:${make_depository}/${program_name}_sources.tar > /dev/null
542	fi
543
544
545
546
547	# UNTAR PREVIOUS UPDATE ON REMOTE HOST, IF EXISTING
548	if [[ $silent = false ]]
549	then
550	echo " *** untar previous update on remote host, if existing"
551	fi
552	### echo "cd ${make_depository}; [[ -f ${program_name}_current_version.tar ]] && tar -xf ${program_name}_current_version.tar" \| ssh -q $ssh_key ${remote_username}@${remote_ip} 2>&1
553	ssh -q $ssh_key ${remote_username}@${remote_ip} "cd ${make_depository}; [[ -f ${program_name}_current_version.tar ]] && tar -xf ${program_name}_current_version.tar" 2>&1
554
555
556	# UNTAR CURRENT SOURCES ON REMOTE HOST
557	if [[ $silent = false ]]
558	then
559	echo " *** untar current sources on remote host"
560	fi
561	### echo "cd ${make_depository}; tar -xf ${program_name}_sources.tar" \| ssh -q $ssh_key ${remote_username}@${remote_ip} 2>&1
562	ssh -q $ssh_key ${remote_username}@${remote_ip} "cd ${make_depository}; tar -xf ${program_name}_sources.tar" 2>&1
563
564
565	# CREATE INIT AND MODULE COAMMNDS
566	[[ "$login_init_cmd" != "" ]] && login_init_cmd=${login_init_cmd}";"
567	[[ "$module_commands" != "" ]] && module_commands=${module_commands}";"
568
569
570	# FIRST CREATE EXECUTABLES FOR THE UTILITY ROUTINES
571	if [[ $silent = false ]]
572	then
573	echo " "
574	echo " *** creating utilities on remote host"
575	fi
576	make_call_string="make -f Makefile_utilities $make_options F90=$compiler_name F90_SER=$compiler_name_ser COPT=\"$cpp_options\" F90FLAGS=\"$compiler_options\" LDFLAGS=\"$linker_options\" "
577	echo "$login_init_cmd $module_commands cd ${make_depository}; echo $make_call_string > LAST_MAKE_CALL; chmod u+x LAST_MAKE_CALL; $make_call_string; [[ \$? != 0 ]] && echo MAKE_ERROR" \| ssh -q $ssh_key ${remote_username}@${remote_ip} 2>&1 \| tee ${configuration_identifier}_last_make_protocol
578	### ssh -q $ssh_key ${remote_username}@${remote_ip} "$login_init_cmd $module_commands cd ${make_depository}; echo $make_call_string > LAST_MAKE_CALL; chmod u+x LAST_MAKE_CALL; $make_call_string; [[ \$? != 0 ]] && echo MAKE_ERROR" 2>&1 \| tee ${configuration_identifier}_last_make_protocol
579
580	if [[ $(grep -c MAKE_ERROR ${configuration_identifier}_last_make_protocol) != 0 ]]
581	then
582	printf "\a\n +++ error(s) occurred during compiling or linking of utilities"
583	printf "\n for host configuration \"$configuration_identifier\" "
584	if [[ $silent = false ]]
585	then
586	answer=dummy
587	printf "\n"
588	while [[ "$answer" != c && "$answer" != k ]]
589	do
590	printf " >>> continue / list errors / kill palmbuild (c/l/k) ? "
591	read answer
592	if [[ "$answer" = l ]]
593	then
594	more ${configuration_identifier}_last_make_protocol
595	fi
596	done
597	if [[ $answer = k ]]
598	then
599	locat=user_abort; exit
600	fi
601	else
602	# ABORT ANYWAY
603	locat=user_abort; exit
604	fi
605	fi
606
607	# NOW COMPILE THE PALM CODE
608	# COMMANDS WILL BE COMMUNICATED TO SSH VIA PIPE, SINCE THIS WAY THE SYSTEM- AND
609	# USER-PROFILES OF THE SHELL ARE COMPLETELY EXECUTED (OTHERWISE, MAKE
610	# MAY E.G. MISS THE COMPILER-PATHS)
611	if [[ $silent = false ]]
612	then
613	echo " "
614	echo " *** compile PALM sources on remote host"
615	fi
616	make_call_string="make $make_options PROG=$program_name F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$compiler_options\" LDFLAGS=\"$linker_options\" "
617	echo "$login_init_cmd $module_commands cd ${make_depository}; echo $make_call_string > LAST_MAKE_CALL; chmod u+x LAST_MAKE_CALL; $make_call_string; [[ \$? != 0 ]] && echo MAKE_ERROR" \| ssh -q $ssh_key ${remote_username}@${remote_ip} 2>&1 \| tee ${configuration_identifier}_last_make_protocol
618	### ssh -q $ssh_key ${remote_username}@${remote_ip} "$login_init_cmd $module_commands cd ${make_depository}; echo $make_call_string > LAST_MAKE_CALL; chmod u+x LAST_MAKE_CALL; $make_call_string; [[ \$? != 0 ]] && echo MAKE_ERROR" 2>&1 \| tee ${configuration_identifier}_last_make_protocol
619
620	if [[ $(grep -c MAKE_ERROR ${configuration_identifier}_last_make_protocol) != 0 ]]
621	then
622	printf "\a\n +++ error(s) occurred during compiling or linking for host configuration \"$configuration_identifier\" "
623	if [[ $silent = false ]]
624	then
625	answer=dummy
626	printf "\n"
627	while [[ "$answer" != c && "$answer" != k ]]
628	do
629	printf " >>> continue / list errors / kill palmbuild (c/l/k) ? "
630	read answer
631	if [[ "$answer" = l ]]
632	then
633	more ${configuration_identifier}_last_make_protocol
634	fi
635	done
636	if [[ $answer = k ]]
637	then
638	locat=user_abort; exit
639	fi
640	else
641	# ABORT ANYWAY
642	locat=user_abort; exit
643	fi
644	fi
645
646	# TAR UPDATED VERSION ON THE REMOTE HOST
647	if [[ $silent = false ]]
648	then
649	printf "\n *** tar update on remote host ..."
650	fi
651	### echo "cd ${make_depository}; chmod u+w ; tar -cf ${program_name}_current_version.tar ${program_name} .f90 .o .mod *.x" \| ssh -q $ssh_key ${remote_username}@${remote_ip} 2>&1
652	ssh -q $ssh_key ${remote_username}@${remote_ip} "cd ${make_depository}; chmod u+w ; tar -cf ${program_name}_current_version.tar ${program_name} .f90 .o .mod *.x" 2>&1
653
654
655	# NOW COMES THE BRANCH FOR CREATING THE EXECUTABLE FOR THE CURRENT RUN
656	# INCLUDING E.G. USER-INTERFACE ROUTINES. ALSO ADD OTHER UTILITY EXECUTABLES. EVERYTHING IS
657	# COLLECTED IN DIRECTORY SOURCES_FOR_RUN_...
658	elif [[ "$run_identifier" != "" ]]
659	then
660
661	# FIRST CHECK, IF COMPILED SOURCES FOR THIS RUN IDENTIFIER EXISTS
662	# AND ASK, IF THEY SHALL BE USED
663	### echo "[[ -d ${fast_io_catalog}/${sources_for_run_catalog} ]] && echo sources for run found" \| ssh -q $ssh_key ${remote_username}@${remote_ip} 2>&1 > ${configuration_identifier}_last_make_protocol
664	ssh -q $ssh_key ${remote_username}@${remote_ip} "[[ -d ${fast_io_catalog}/${sources_for_run_catalog} ]] && echo sources for run found" 2>&1 > ${configuration_identifier}_last_make_protocol
665	if [[ $(grep -c "sources for run found" ${configuration_identifier}_last_make_protocol) != 0 && $use_existing_sources_folder = true ]]
666	then
667	printf "\a\n *** compiled sources for run \"$run_identifier\" found on remote host in folder"
668	printf "\n ${fast_io_catalog}/${sources_for_run_catalog}"
669	printf "\n will be used!"
670	exit
671	fi
672
673	# COPY MAKE DEPOSITORY ON REMOTE MACHINE TO SOURCES_FOR_RUN_...
674	if [[ $silent = false ]]
675	then
676	printf "\n *** copy MAKE_DEPOSITORY_${configuration_identifier} on remote host to $sources_for_run_catalog \n"
677	fi
678	### echo "rm -rf ${fast_io_catalog}/${sources_for_run_catalog}; mkdir -p ${fast_io_catalog}/${sources_for_run_catalog}; cp ${make_depository}/${program_name}_current_version.tar ${fast_io_catalog}/${sources_for_run_catalog}; cd ${fast_io_catalog}/${sources_for_run_catalog}; tar xf ${program_name}_current_version.tar" \| ssh -q $ssh_key ${remote_username}@${remote_ip} 2>&1
679	ssh -q $ssh_key ${remote_username}@${remote_ip} "rm -rf ${fast_io_catalog}/${sources_for_run_catalog}; mkdir -p ${fast_io_catalog}/${sources_for_run_catalog}; cp ${make_depository}/${program_name}_current_version.tar ${fast_io_catalog}/${sources_for_run_catalog}; cd ${fast_io_catalog}/${sources_for_run_catalog}; tar xf ${program_name}_current_version.tar" 2>&1
680
681
682	# COPY CONTENTS OF SOURCES_FOR_RUN_... TO SOURCES_FOR_RUN_... ON THE REMOTE MACHINE
683	if [[ $silent = false ]]
684	then
685	printf "\n *** copy ${base_directory}/${sources_for_run_catalog}"
686	printf "\n to $sources_for_run_catalog on remote host \n"
687	fi
688	scp -q $ssh_key ${base_directory}/${sources_for_run_catalog}/{,.[!.]} ${remote_username}@${remote_ip}:${fast_io_catalog}/${sources_for_run_catalog}
689
690
691	# CREATE EXECUTABLE FROM THE NEW/MODIFIED SOURCE FILES, IF THERE ARE ANY
692	if [[ $(ls -1 ${base_directory}/${sources_for_run_catalog}/ \| grep -c .$suf) != 0 ]]
693	then
694
695	make_call_string="make $make_options PROG=$program_name F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$compiler_options\" LDFLAGS=\"$linker_options\" "
696	[[ "$login_init_cmd" != "" ]] && login_init_cmd=${login_init_cmd}";"
697	[[ "$module_commands" != "" ]] && module_commands=${module_commands}";"
698	if [[ $silent = false ]]
699	then
700	echo " *** execute \"make\" on remote host"
701	fi
702	### echo "$login_init_cmd $module_commands cd ${fast_io_catalog}/${sources_for_run_catalog}; echo $make_call_string > LAST_MAKE_CALL; chmod u+x LAST_MAKE_CALL; $make_call_string; [[ \$? != 0 ]] && echo MAKE_ERROR" \| ssh -q $ssh_key ${remote_username}@${remote_ip} 2>&1 \| tee ${configuration_identifier}_last_make_protocol
703	ssh -q $ssh_key ${remote_username}@${remote_ip} "$login_init_cmd $module_commands cd ${fast_io_catalog}/${sources_for_run_catalog}; echo $make_call_string > LAST_MAKE_CALL; chmod u+x LAST_MAKE_CALL; $make_call_string; [[ \$? != 0 ]] && echo MAKE_ERROR" 2>&1 \| tee ${configuration_identifier}_last_make_protocol
704
705	if [[ $(grep -c MAKE_ERROR ${configuration_identifier}_last_make_protocol) != 0 ]]
706	then
707	printf "\a\n +++ error(s) occurred during compiling or linking for host configuration \"$configuration_identifier\" "
708	if [[ $silent = false ]]
709	then
710	answer=dummy
711	printf "\n"
712	while [[ "$answer" != c && "$answer" != k ]]
713	do
714	printf " >>> continue / list errors / kill palmbuild (c/l/k) ? "
715	read answer
716	if [[ "$answer" = l ]]
717	then
718	more ${configuration_identifier}_last_make_protocol
719	fi
720	done
721	if [[ $answer = k ]]
722	then
723	### echo "rm -rf ${fast_io_catalog}/${sources_for_run_catalog}" \| ssh -q $ssh_key ${remote_username}@${remote_ip} 2>&1
724	ssh -q $ssh_key ${remote_username}@${remote_ip} "rm -rf ${fast_io_catalog}/${sources_for_run_catalog}" 2>&1
725	locat=user_abort; exit
726	fi
727	else
728	# ABORT ANYWAY
729	### echo "rm -rf ${fast_io_catalog}/${sources_for_run_catalog}" \| ssh -q $ssh_key ${remote_username}@${remote_ip} 2>&1
730	ssh -q $ssh_key ${remote_username}@${remote_ip} "rm -rf ${fast_io_catalog}/${sources_for_run_catalog}" 2>&1
731	locat=user_abort; exit
732	fi
733	fi
734
735	else
736
737	echo " *** nothing to compile for this run"
738
739	fi
740
741	fi
742
743	rm -rf ${source_path}/${configuration_identifier}_last_make_protocol
744
745
746	# MAKE ON LOCAL HOST
747	else
748
749
750	# NEXT IS THE BRANCH FOR CREATING THE MAKE_DEPOSITORY_... ON THE
751	# LOCAL HOST
752	if [[ "$run_identifier" = "" ]]
753	then
754
755	# SET THE ENVIRONMENT (EXECUTE INIT AND MODULE COMMANDS)
756	if [[ "$login_init_cmd" != "" ]]
757	then
758	$login_init_cmd
759	fi
760
761	if [[ "$module_commands" != "" ]]
762	then
763	$module_commands
764	fi
765
766
767	# CREATE MAKE-DEPOSITORY, IF IT DOES NOT EXIST
768	eval make_depository=$make_depository
769	if [[ ! -d $make_depository ]]
770	then
771	if mkdir -p $make_depository
772	then
773	if [[ $silent = false ]]
774	then
775	printf "\n\n *** directory for local make depository:"
776	printf "\n $make_depository"
777	printf "\n was created\n"
778	fi
779	else
780	printf "\n +++ directory for local make depository:"
781	printf "\n $make_depository"
782	printf "\n cannot be created"
783	locat=local_depository; exit
784	fi
785	fi
786
787	# COPY SOURCE-CODE FROM REPOSITORY TO MAKE-DEPOSITORY
788	if [[ $silent = false ]]
789	then
790	echo " "
791	echo " *** untar current source sources on local host in"
792	echo " $make_depository"
793	fi
794	cd $make_depository
795	cp $source_path/${program_name}_sources.tar .
796	tar xf ${program_name}_sources.tar
797
798
799	# FIRST CREATE EXECUTABLES FOR THE UTILITY ROUTINES
800	if [[ $silent = false ]]
801	then
802	echo " "
803	echo " *** creating utilities on local host"
804	fi
805	make -f Makefile_utilities $make_options F90=$compiler_name F90_SER=$compiler_name_ser COPT="$cpp_options" F90FLAGS="$compiler_options" LDFLAGS="$linker_options" \| tee ${configuration_identifier}_last_make_protocol
806
807	if [[ ${PIPESTATUS[0]} != 0 ]]
808	then
809	printf "\a\n +++ error(s) occurred during compiling of the utilities for host configuration \"$configuration_identifier\" "
810	if [[ $silent = false ]]
811	then
812	answer=dummy
813	printf "\n"
814	while [[ "$answer" != c && "$answer" != k ]]
815	do
816	printf " >>> continue / list errors / kill palmbuild (c/l/k) ? "
817	read answer
818	if [[ "$answer" = l ]]
819	then
820	more ${configuration_identifier}_last_make_protocol
821	fi
822	done
823	if [[ $answer = k ]]
824	then
825	locat=user_abort; exit
826	fi
827	else
828	# ABORT ANYWAY
829	locat=user_abort; exit
830	fi
831	else
832	cp agent_preprocessing $source_path/../SCRIPTS/.
833	cp inifor $source_path/../SCRIPTS/.
834	fi
835
836
837	# CALL MAKE ON LOCAL HOST USING THE OPTIONS DETERMINED FURTHER ABOVE
838	if [[ $silent = false ]]
839	then
840	echo " "
841	echo " *** compile PALM sources on local host"
842	fi
843
844	make $make_options PROG=$program_name F90=$compiler_name COPT="$cpp_options" F90FLAGS="$compiler_options" LDFLAGS="$linker_options" 2>&1 \| tee ${configuration_identifier}_last_make_protocol
845
846	if [[ ${PIPESTATUS[0]} != 0 ]]
847	then
848	printf "\a\n +++ error(s) occurred during compiling or linking for host configuration \"$configuration_identifier\" "
849	if [[ $silent = false ]]
850	then
851	answer=dummy
852	printf "\n"
853	while [[ "$answer" != c && "$answer" != k ]]
854	do
855	printf " >>> continue / list errors / kill palmbuild (c/l/k) ? "
856	read answer
857	if [[ "$answer" = l ]]
858	then
859	more ${configuration_identifier}_last_make_protocol
860	fi
861	done
862	if [[ $answer = k ]]
863	then
864	locat=user_abort; exit
865	fi
866	else
867	# ABORT ANYWAY
868	locat=user_abort; exit
869	fi
870	fi
871
872
873	# TAR NEW VERSION ON LOCAL HOST
874	if [[ $silent = false ]]
875	then
876	printf "\n *** tar update on local host ..."
877	fi
878	tar -cf ${program_name}_current_version.tar ${program_name} .$suf .o .mod .x
879
880	else
881
882	# NOW COMES THE BRANCH FOR CREATING THE EXECUTABLE FOR THE CURRENT RUN
883	# INCLUDING E.G. USER-INTERFACE ROUTINES. ALSO ADD OTHER UTILITY EXECUTABLES. EVERYTHING IS
884	# COLLECTED IN DIRECTORY SOURCES_FOR_RUN_...
885
886	# FIRST CHECK, IF COMPILED SOURCES FOR THIS RUN IDENTIFIER EXISTS
887	# AND ASK, IF THEY SHALL BE USED
888	if [[ -d ${fast_io_catalog}/${sources_for_run_catalog} && $use_existing_sources_folder = true ]]
889	then
890	printf "\a\n *** compiled sources for run \"$run_identifier\" found on local host in folder"
891	printf "\n ${fast_io_catalog}/${sources_for_run_catalog}"
892	printf "\n will be used!"
893	exit
894	fi
895
896	# SECOND CHECK, IF A DEPOSITORY EXISTS ON THE LOCAL MACHINE
897	if [[ ! -d ${make_depository} ]]
898	then
899	printf "\n +++ directory for local make depository:"
900	printf "\n $make_depository"
901	printf "\n not found. Please run \"palmbuild -c $configuration_identifier\" "
902	locat=make_depository; exit
903	fi
904
905
906	# COPY MAKE DEPOSITORY ON LOCAL MACHINE TO SOURCES_FOR_RUN_...
907	if [[ $silent = false ]]
908	then
909	printf "\n *** copy MAKE_DEPOSITORY_${configuration_identifier} on local host to "
910	printf "\n ${fast_io_catalog}/${sources_for_run_catalog} \n"
911	fi
912	rm -rf ${fast_io_catalog}/${sources_for_run_catalog}
913	mkdir -p ${fast_io_catalog}/${sources_for_run_catalog}
914	cp ${make_depository}/${program_name}_current_version.tar ${fast_io_catalog}/${sources_for_run_catalog}
915	cd $fast_io_catalog/${sources_for_run_catalog}
916	tar xf ${program_name}_current_version.tar
917
918
919	# COPY CONTENTS OF SOURCES_FOR_RUN_... TO SOURCES_FOR_RUN_...
920	# IN THE FAST_IO_CATALOG ON THE LOCAL MACHINE
921	if [[ $silent = false ]]
922	then
923	printf "\n *** copy ${base_directory}/${sources_for_run_catalog} to"
924	printf "\n ${fast_io_catalog}/${sources_for_run_catalog} on local host \n"
925	fi
926	cp ${base_directory}/${sources_for_run_catalog}/{,.[!.]} ${fast_io_catalog}/${sources_for_run_catalog}
927
928
929	# CREATE EXECUTABLE FROM THE NEW/MODIFIED SOURCE FILES, IF THERE ARE ANY
930	if [[ $(ls -1 ${base_directory}/${sources_for_run_catalog}/ \| grep -c .$suf) != 0 ]]
931	then
932
933	if [[ $silent = false ]]
934	then
935	echo " *** execute \"make\" on local host"
936	fi
937	[[ "$login_init_cmd" != "" ]] && $login_init_cmd
938	[[ "$module_commands" != "" ]] && $module_commands
939
940	make $make_options PROG=$program_name F90=$compiler_name COPT="$cpp_options" F90FLAGS="$compiler_options" LDFLAGS="$linker_options"
941
942	if [[ ${PIPESTATUS[0]} != 0 ]]
943	then
944
945	printf "\a\n +++ error(s) occurred during compiling or linking for host configuration \"$configuration_identifier\" "
946	if [[ $silent = false ]]
947	then
948	answer=dummy
949	printf "\n"
950	while [[ "$answer" != c && "$answer" != k ]]
951	do
952	printf " >>> continue / kill palmbuild (c/k) ? "
953	read answer
954	done
955	if [[ $answer = k ]]
956	then
957	rm -rf ${fast_io_catalog}/${sources_for_run_catalog}
958	locat=user_abort; exit
959	fi
960	else
961	# ABORT ANYWAY
962	rm -rf ${fast_io_catalog}/${sources_for_run_catalog}
963	locat=user_abort; exit
964	fi
965	fi
966
967	else
968
969	echo " *** nothing to compile for this run"
970
971	fi
972
973	fi
974	fi

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