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source: palm/trunk/SCRIPTS/palmbuild @ 4220

Last change on this file since 4220 was 4082, checked in by raasch, 5 years ago
bugfix for last commit
Property svn:executable set to ``* Property svn:keywords set to `Id Rev`
File size: 35.0 KB

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1	#!/bin/bash
2
3	# palmbuild - script for compiling the PALM code and its utility programs
4
5	#------------------------------------------------------------------------------#
6	# This file is part of the PALM model system.
7	#
8	# PALM is free software: you can redistribute it and/or modify it under the terms
9	# of the GNU General Public License as published by the Free Software Foundation,
10	# either version 3 of the License, or (at your option) any later version.
11	#
12	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
13	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
14	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
15	#
16	# You should have received a copy of the GNU General Public License along with
17	# PALM. If not, see <http://www.gnu.org/licenses/>.
18	#
19	# Copyright 2017-2018 Leibniz Universitaet Hannover
20	#------------------------------------------------------------------------------#
21	#
22	# Current revisions:
23	# ------------------
24	#
25	#
26	# Former revisions:
27	# -----------------
28	# $Id: palmbuild 4082 2019-07-10 14:42:00Z suehring $
29	# bugfix for executing module commands and for interpreting linker options
30	# on local machines
31	#
32	# 3756 2019-02-20 11:24:32Z suehring
33	# Disable compilation of postprocessing tool for surface output, until
34	# crashes with unexpected segmentation faults with intel compiler are solved.
35	#
36	# 3725 2019-02-07 10:11:02Z raasch
37	# ssh-calls for compilations on remote systems modified to avoid output
38	# of login messages on specific systems changed again (reverted as before r3549)
39	#
40	# 3549 2018-11-21 15:44:44Z raasch
41	# ssh-calls for compilations on remote systems modified to avoid output
42	# of login messages on specific systems
43	#
44	# 3534 2018-11-19 15:35:16Z raasch
45	# build of inifor added,
46	# ssh-calls rearranged to avoid output of system/user-profile messages
47	#
48	# 3523 2018-11-13 16:09:31Z suehring
49	# Enable compilation of post-processing tool for surface output - interface
50	# for posix conform sytemcalls is implemented.
51	#
52	# 3499 2018-11-07 10:55:15Z suehring
53	# Temporarily avoid compilation of post-processing tool for surface output
54	# until a workaround for compiler-specific intrinsic functions is found.
55	#
56	# 3494 2018-11-06 14:51:27Z suehring
57	# Add tool for surface-output post-processing
58	#
59	# 3455 2018-10-30 14:12:31Z raasch
60	# options -h and -d renamed -c and -r, respectively
61	#
62	# 3312 2018-10-06 14:15:46Z knoop
63	# "host identifier" in header output renamed "config. identifier",
64	# host_configuration renamed configuration_identifier,
65	# jobname renamed run_identifier
66	# header output of PALM code revision,
67	# options -m, -s, and -S removed
68	#
69	# 3210 2018-08-28 07:31:13Z sward
70	# Bugfix: agent_preprocessing stays in MAKE_DEPOSITORY after compilation
71	#
72	# 3208 2018-08-27 13:10:50Z sward
73	# Added building of agent_preprocessing
74	#
75	# 3033 2018-05-23 15:26:19Z raasch
76	# "fname" renamed to "jobname"
77	#
78	# 2718 2018-01-02 08:49:38Z maronga
79	# Corrected "Former revisions" section
80	#
81	# 2696 2017-12-14 17:12:51Z kanani
82	# Change in file header (GPL part)
83	#
84	# 2566 2017-10-20 08:50:47Z raasch
85	# informative messages switched of almost completely in silent mode
86	# two header blocks merged into one
87	#
88	# 2506 2017-09-29 08:30:37Z raasch
89	# option -V added to check for an existing SOURCES_FOR_RUN_... folder
90	# host configuration added to SOURCES_FOR_RUN_... folder name
91	# SOURCES_FOR_RUN_... folder is deleted in case of compilation errors
92	# host_identifier renamed host_configuration
93	#
94	# 2500 2017-09-25 11:10:03Z raasch
95	# bugfix for r2492
96	#
97	# 2492 2017-09-21 14:18:48Z raasch
98	# ask for compilation, if SOURCES_FOR_RUN_... exists
99	#
100	# 2487 2017-09-21 11:30:10Z raasch
101	# bugfix: abort in case of compiling/linking errors in silent mode
102	#
103	# 2422 2017-09-08 08:25:41Z raasch
104	# initial revision
105	#
106	#------------------------------------------------------------------------------#
107	# palmbuild - script for compiling the PALM code and its utility programs
108	#
109	# Procedure to compile code on local and remote hosts using the
110	# make-mechanism. The source code must be provided on the local host.
111	#
112	# @note This script does not work on MAC OS
113	#------------------------------------------------------------------------------#
114
115
116	# VARIABLE DECLARATIONS + DEFAULT VALUES
117	calltime=""
118	column1=""
119	column2=""
120	configuration_identifier=default
121	global_revision=""
122	locat=normal
123	makefile=""
124	make_options=""
125	module_commands=""
126	program_name=palm
127	remote_ip=""
128	silent=false
129	ssh_key=""
130	suf=f90
131	use_existing_sources_folder=false
132	version="palmbuild 1.0 Rev$Rev: 4082 $"
133	working_directory=`pwd`
134
135
136	# ERROR HANDLING IN CASE OF EXIT
137	trap 'rm -rf ${source_path}/${configuration_identifier}_last_make_protocol
138	if [[ $locat != normal && $locat != control_c ]]
139	then
140	printf "\n\n+++ palmbuild crashed \n\n"
141	exit 1
142	elif [[ $locat != normal ]]
143	then
144	printf "\n+++ palmbuild killed by \"^C\" \n\n"
145	exit 2
146	else
147	if [[ $silent = false ]]
148	then
149	printf "\n --> palmbuild finished\n\n"
150	fi
151	exit 0
152	fi' exit
153
154
155	# ACTIONS IN CASE OF TERMINAL-BREAK (CONTROL-C):
156	trap 'locat=control_c
157	exit 1
158	' 2
159
160
161
162	# READ SHELLSCRIPT-OPTIONS
163	while getopts :c:r:uvV option
164	do
165	case $option in
166	(c) configuration_identifier=$OPTARG;;
167	(r) run_identifier=$OPTARG;;
168	(v) silent=true;;
169	(V) use_existing_sources_folder=true;;
170	(\?) printf "\n +++ unknown option $OPTARG \n";
171	locat=parameter; exit;;
172	esac
173	done
174
175
176	# BUILD THE CONFIGURATION-FILE NAME AND THE SOURCES_FOR_RUN-FOLDER NAME
177	config_file=.palm.config.$configuration_identifier
178	sources_for_run_catalog=SOURCES_FOR_RUN_${configuration_identifier}_$run_identifier
179
180
181	# CHECK, IF CONFIGURATION-FILE EXISTS
182	if [[ ! -f $config_file ]]
183	then
184	printf "\n +++ configuration file: "
185	printf "\n $config_file"
186	printf "\n does not exist"
187	locat=configuration; exit
188	fi
189
190
191	# ### is this really required?
192	config_file=$PWD/$config_file
193
194
195	# READ VARIABLE SETTINGS FROM CONFIG FILE LINE BY LINE
196	while read line
197	do
198
199	# FIRST REPLACE ENVIRONMENT-VARIABLES BY THEIR RESPECTIVE VALUES
200	eval line=\"$line\"
201
202
203	# INTERPRET THE LINE
204	if [[ "$(echo $line)" = "" ]]
205	then
206
207	# EMPTY LINE, NO ACTION
208	continue
209
210	elif [[ "$(echo $line \| cut -c1)" = "#" ]]
211	then
212
213	# LINE IS A COMMENT LINE
214	continue
215
216	elif [[ "$(echo $line \| cut -c1)" = "%" ]]
217	then
218
219	# LINE DEFINES AN ENVIRONMENT-VARIABLE
220	var=`echo $line \| cut -d" " -s -f1 \| cut -c2-`
221	value=`echo $line \| cut -d" " -s -f2-`
222
223	# REPLACE ":" BY " " IN COMPILER- CPP- OR LINKER-OPTIONS,
224	# "::" IS REPLACED BY ":".
225	#value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
226
227
228	# VALUE FROM THE CONFIGURATION-FILE IS ASSIGNED TO THE
229	# ENVIRONMENT-VARIABLE, BUT ONLY IF NO VALUE HAS BEEN ALREADY
230	# ASSIGNED WITHIN THIS SCRIPT (E.G. BY SCRIPT-OPTIONS).
231	# NON-ASSIGNED VARIABLES HAVE VALUE "" OR 0 (IN CASE OF INTEGER).
232	# HENCE THE GENERAL RULE IS: SCRIPT-OPTION OVERWRITES THE
233	# CONFIGURATION-FILE.
234	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
235	then
236	eval export $var="\$value"
237
238	# TERMINAL OUTPUT OF ENVIRONMENT-VARIABLES, IF TRACEBACK IS SWITCHED on
239	if [[ $do_trace = true ]]
240	then
241	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
242	fi
243	fi
244
245	else
246
247	# SKIP ALL OTHER LINES
248	continue
249
250	fi
251
252	done < $config_file
253
254
255	# CHECK, IF THE BASE DIRECTORY PATH HAS BEEN GIVEN
256	if [[ "$base_directory" = "" ]]
257	then
258	printf "\n +++ no base directory found in configuration file"
259	locat=config_file; exit
260	else
261	if [[ ! -d $base_directory ]]
262	then
263	printf "\n\n +++ base directory \"$base_directory\" "
264	printf "\n does not exist"
265	locat=source_path; exit
266	fi
267	fi
268
269
270	# CHECK SOURCE-CODE PATH
271	if [[ "$source_path" = "" ]]
272	then
273	printf "\n +++ no source path found in configuration file"
274	locat=config_file; exit
275	else
276	if [[ ! -d $source_path ]]
277	then
278	printf "\n\n +++ source path \"$source_path\" "
279	printf "\n does not exist"
280	locat=source_path; exit
281	fi
282	fi
283
284
285	# CHECK MAKEFILE
286	makefile=$source_path/Makefile
287	if [[ ! -f $makefile ]]
288	then
289	printf "\n +++ makefile: "
290	printf "\n $makefile"
291	printf "\n does not exist"
292	locat=makefile; exit
293	fi
294
295
296	# CHECK COMPILERNAME
297	if [[ "$compiler_name" = "" ]]
298	then
299	printf "\n +++ no compiler name found in configuration file"
300	locat=config_file; exit
301	fi
302
303
304	# CHECK SERIAL COMPILERNAME
305	if [[ "$compiler_name_ser" = "" ]]
306	then
307	printf "\n +++ no compiler name for serial compilation in configuration file"
308	locat=config_file; exit
309	fi
310
311
312	# DETERMINE SSH-KEY TO BE USED
313	if [[ "$ssh_key" != "" ]]
314	then
315	ssh_key="-i $HOME/.ssh/`echo $line \| cut -d" " -s -f2`"
316	fi
317
318
319	#CHECK CPP-OPTIONS
320	if [[ "$cpp_options" = "" ]]
321	then
322	printf "\n +++ WARNING: no cpp-options found in configuration file"
323	fi
324
325
326	# CHECK SETTINGS IN CASE OF COMPILING ON REMOTE MACHINE
327	if [[ "$remote_ip" != "" ]]
328	then
329
330	if [[ "$remote_username" = "" ]]
331	then
332	printf "\n +++ no user name given in configuration file"
333	locat=config_file; exit
334	fi
335
336	# GET SOURCE AND DEPOSITORY PATH ON THE REMOTE MACHINE WITHOUT EVALUATING
337	# THE $
338	# IF NOT GIVEN, USE THE LOCAL SOURCE AND DEPOSITORY PATH
339	line=`grep %remote_source_path $config_file`
340	if [[ "$line" != "" ]]
341	then
342	remote_source_path=`echo $line \| cut -d" " -s -f2`
343	else
344	line=`grep %source_path $config_file`
345	remote_source_path=`echo $line \| cut -d" " -s -f2`
346	fi
347
348	line=`grep %base_directory $config_file`
349	make_depository=`echo $line \| cut -d" " -s -f2`/MAKE_DEPOSITORY_${configuration_identifier}
350
351	else
352
353	make_depository=${base_directory}/MAKE_DEPOSITORY_${configuration_identifier}
354
355	fi
356
357
358	# GET THE GLOBAL REVISION-NUMBER OF THE SVN-REPOSITORY
359	global_revision=`svnversion $source_path 2>/dev/null`
360	global_revision="Rev: $global_revision"
361
362
363	# HEADER-OUTPUT (PART1: MESSAGES CONCERNING THE LOCAL HOST)
364	if [[ $silent = false ]]
365	then
366	calltime=$(date)
367	printf "\n"
368	printf "#------------------------------------------------------------------------# \n"
369	printf "\| %-40s%30s \| \n" "$version" "$calltime"
370	printf "\| %-40s%30s \| \n" "PALM code $global_revision" " "
371	printf "\| \| \n"
372	printf "\| %-13s%-57s \| \n" "called on:" "$(hostname) (IP:$local_ip)"
373	column2=$(echo $config_file \| cut -c1-57 )
374	printf "\| %-13s%-57s \| \n" "config file:" "$column2"
375	line=$(echo "$config_file" \| cut -c58-)
376	while [[ "$line" != "" ]]
377	do
378	column1=""
379	column2=$(echo $line \| cut -c1-57 )
380	printf "\| %-13s%-57s \| \n" "$column1" "$column2"
381	line=$(echo "$line" \| cut -c58-)
382	done
383	column2=$(echo $makefile \| cut -c1-57 )
384	printf "\| %-13s%-57s \| \n" "makefile:" "$column2"
385	line=$(echo "$makefile" \| cut -c58-)
386	while [[ "$line" != "" ]]
387	do
388	column1=""
389	column2=$(echo $line \| cut -c1-57 )
390	printf "\| %-13s%-57s \| \n" "$column1" "$column2"
391	line=$(echo "$line" \| cut -c58-)
392	done
393	column2=$(echo $source_path \| cut -c1-57 )
394	printf "\| %-13s%-57s \| \n" "source path:" "$column2"
395	line=$(echo "$source_path" \| cut -c58-)
396	while [[ "$line" != "" ]]
397	do
398	column1=""
399	column2=$(echo $line \| cut -c1-57 )
400	printf "\| %-13s%-57s \| \n" "$column1" "$column2"
401	line=$(echo "$line" \| cut -c58-)
402	done
403	printf "\| \| \n"
404
405	if [[ "$remote_ip" != "" ]]
406	then
407	column2="$configuration_identifier"
408	printf "\| %-20s%-50s \| \n" "config. identifier:" "$column2"
409	column2=$(echo "$make_depository" \| cut -c1-50 )
410	printf "\| %-20s%-50s \| \n" "remote depository:" "$column2"
411	else
412	column2="$configuration_identifier"
413	printf "\| %-20s%-50s \| \n" "config. identifier:" "$column2"
414	column2=$(echo "$make_depository" \| cut -c1-50 )
415	printf "\| %-20s%-50s \| \n" "local depository:" "$column2"
416	fi
417	line=$(echo "$make_depository" \| cut -c51-)
418	while [[ "$line" != "" ]]
419	do
420	column1=""
421	column2=$(echo "$line" \| cut -c1-50 )
422	printf "\| %-20s%-50s \| \n" "$column1" "$column2"
423	line=$(echo "$line" \| cut -c51-)
424	done
425
426	if [[ "$remote_ip" != "" ]]
427	then
428	printf "\| %-20s%-50s \| \n" "remote username:" "$remote_username"
429	printf "\| %-20s%-50s \| \n" "remote address:" "$remote_ip"
430	else
431	printf "\| %-20s%-50s \| \n" "username:" "$local_username"
432	printf "\| %-20s%-50s \| \n" "address:" "$local_ip"
433	fi
434
435	printf "\| %-20s%-50s \| \n" "compiler:" "$compiler_name"
436	printf "\| %-20s%-50s \| \n" "serial compiler:" "$compiler_name_ser"
437
438	if [[ "$make_options" != "" ]]
439	then
440	printf "\| %-20s%-50s \| \n" "make options:" "$make_options"
441	fi
442	column2=$(echo "$cpp_options" \| cut -c1-50 )
443	printf "\| %-20s%-50s \| \n" "cpp options:" "$column2"
444	line=$(echo "$cpp_options" \| cut -c51-)
445	while [[ "$line" != "" ]]
446	do
447	column1=""
448	column2=$(echo "$line" \| cut -c1-50 )
449	printf "\| %-20s%-50s \| \n" "$column1" "$column2"
450	line=$(echo "$line" \| cut -c51-)
451	done
452	column2=$(echo "$compiler_options" \| cut -c1-50 )
453	printf "\| %-20s%-50s \| \n" "compiler options:" "$column2"
454	line=$(echo "$compiler_options" \| cut -c51-)
455	while [[ "$line" != "" ]]
456	do
457	column1=""
458	column2=$(echo "$line" \| cut -c1-50 )
459	printf "\| %-20s%-50s \| \n" "$column1" "$column2"
460	line=$(echo "$line" \| cut -c51-)
461	done
462	column2=$(echo "$linker_options" \| cut -c1-50 )
463	printf "\| %-20s%-50s \| \n" "linker options:" "$column2"
464	line=$(echo "$linker_options" \| cut -c51-)
465	while [[ "$line" != "" ]]
466	do
467	column1=""
468	column2=$(echo "$line" \| cut -c1-50 )
469	printf "\| %-20s%-50s \| \n" "$column1" "$column2"
470	line=$(echo "$line" \| cut -c51-)
471	done
472	if [[ "$login_init_cmd" != "" ]]
473	then
474	column2=$(echo "$login_init_cmd" \| cut -c1-50 )
475	printf "\| %-20s%-50s \| \n" "login init command:" "$column2"
476	line=$(echo "$login_init_cmd" \| cut -c51-)
477	while [[ "$line" != "" ]]
478	do
479	column1=""
480	column2=$(echo "$line" \| cut -c1-50 )
481	printf "\| %-20s%-50s \| \n" "$column1" "$column2"
482	line=$(echo "$line" \| cut -c51-)
483	done
484	fi
485	if [[ "$module_commands" != "" ]]
486	then
487	column2=$(echo "$module_commands" \| cut -c1-50 )
488	printf "\| %-20s%-50s \| \n" "module command(s):" "$column2"
489	line=$(echo "$module_commands" \| cut -c51-)
490	while [[ "$line" != "" ]]
491	do
492	column1=""
493	column2=$(echo "$line" \| cut -c1-50 )
494	printf "\| %-20s%-50s \| \n" "$column1" "$column2"
495	line=$(echo "$line" \| cut -c51-)
496	done
497	fi
498	printf "#------------------------------------------------------------------------# \n"
499
500	answer=dummy
501	printf "\n"
502	while [[ "$answer" != y && "$answer" != Y && "$answer" != s && "$answer" != S && "$answer" != a && "$answer" != A ]]
503	do
504	printf " >>> continue (y(es)/a(bort)) ? "
505	read answer
506	done
507	if [[ $answer = a \|\| $answer = A ]]
508	then
509	locat=user_abort; exit
510	fi
511	fi
512
513
514	# TAR THE SOURCES AND MAKEFILES
515	# UTILITIES ARE TEMPORARILY COPIED TO THE SOURCE DIRECTORY IN ORDER TO TAR
516	# THEM TOO
517	if [[ $silent = false ]]
518	then
519	printf "\n\n *** tar of makefile and source files in"
520	printf "\n $source_path\n"
521	fi
522	cd $source_path
523	cp -p ../UTIL/combine_plot_fields.f90 .
524	cp -p ../UTIL/compare_palm_logs.f90 .
525	cp -p ../UTIL/agent_preprocessing/agent_preprocessing.f90 .
526	#cp -p ../UTIL/surface_output_processing/surface_output_to_vtk.f90 .
527	cp -p ../UTIL/inifor/src/inifor*f90 .
528	cp -p ../UTIL/Makefile_utilities .
529	tar -cf ${program_name}_sources.tar Makefile* *.$suf
530	rm combine_plot_fields.f90 compare_palm_logs.f90 agent_preprocessing.f90 Makefile_utilities inifor*f90 #surface_output_to_vtk.f90
531
532
533	# MAKE ON REMOTE HOST
534	if [[ "$remote_ip" != "" ]]
535	then
536
537	# NEXT IS THE BRANCH FOR CREATING THE MAKE_DEPOSITORY_...
538	if [[ "$run_identifier" = "" ]]
539	then
540
541	# COPY CURRENT SOURCE CODE TO SOURCE-CODE DIRECTORY ON THE REMOTE HOST
542	# CREATE THIS DIRECTORY, IF IT DOES NOT EXIST
543	if [[ $silent = false ]]
544	then
545	echo " "
546	echo " *** copying \"${program_name}_sources.tar\" to \"${remote_ip}:${make_depository}/\" "
547	ssh -q $ssh_key ${remote_username}@${remote_ip} "[[ ! -d ${make_depository} ]] && (echo \" *** ${make_depository} will be created\"; mkdir -p ${make_depository})" 2>&1
548	scp $ssh_key ${source_path}/${program_name}_sources.tar ${remote_username}@${remote_ip}:${make_depository}/${program_name}_sources.tar
549	else
550	ssh -q $ssh_key ${remote_username}@${remote_ip} "[[ ! -d ${make_depository} ]] && mkdir -p ${make_depository}" 2>&1
551	scp $ssh_key ${source_path}/${program_name}_sources.tar ${remote_username}@${remote_ip}:${make_depository}/${program_name}_sources.tar > /dev/null
552	fi
553
554
555
556
557	# UNTAR PREVIOUS UPDATE ON REMOTE HOST, IF EXISTING
558	if [[ $silent = false ]]
559	then
560	echo " *** untar previous update on remote host, if existing"
561	fi
562	ssh -q $ssh_key ${remote_username}@${remote_ip} "cd ${make_depository}; [[ -f ${program_name}_current_version.tar ]] && tar -xf ${program_name}_current_version.tar" 2>&1
563
564
565	# UNTAR CURRENT SOURCES ON REMOTE HOST
566	if [[ $silent = false ]]
567	then
568	echo " *** untar current sources on remote host"
569	fi
570	ssh -q $ssh_key ${remote_username}@${remote_ip} "cd ${make_depository}; tar -xf ${program_name}_sources.tar" 2>&1
571
572
573	# CREATE INIT AND MODULE COAMMNDS
574	[[ "$login_init_cmd" != "" ]] && login_init_cmd=${login_init_cmd}";"
575	[[ "$module_commands" != "" ]] && module_commands=${module_commands}";"
576
577
578	# FIRST CREATE EXECUTABLES FOR THE UTILITY ROUTINES
579	if [[ $silent = false ]]
580	then
581	echo " "
582	echo " *** creating utilities on remote host"
583	fi
584	make_call_string="make -f Makefile_utilities $make_options F90=$compiler_name F90_SER=$compiler_name_ser COPT=\"$cpp_options\" F90FLAGS=\"$compiler_options\" LDFLAGS=\"$linker_options\" "
585	### echo "$login_init_cmd $module_commands cd ${make_depository}; echo $make_call_string > LAST_MAKE_CALL; chmod u+x LAST_MAKE_CALL; $make_call_string; [[ \$? != 0 ]] && echo MAKE_ERROR" \| ssh -q $ssh_key ${remote_username}@${remote_ip} 2>/dev/null \| tee ${configuration_identifier}_last_make_protocol
586	ssh -q $ssh_key ${remote_username}@${remote_ip} "$login_init_cmd $module_commands cd ${make_depository}; echo $make_call_string > LAST_MAKE_CALL; chmod u+x LAST_MAKE_CALL; $make_call_string; [[ \$? != 0 ]] && echo MAKE_ERROR" 2>&1 \| tee ${configuration_identifier}_last_make_protocol
587
588	if [[ $(grep -c MAKE_ERROR ${configuration_identifier}_last_make_protocol) != 0 ]]
589	then
590	printf "\a\n +++ error(s) occurred during compiling or linking of utilities"
591	printf "\n for host configuration \"$configuration_identifier\" "
592	if [[ $silent = false ]]
593	then
594	answer=dummy
595	printf "\n"
596	while [[ "$answer" != c && "$answer" != k ]]
597	do
598	printf " >>> continue / list errors / kill palmbuild (c/l/k) ? "
599	read answer
600	if [[ "$answer" = l ]]
601	then
602	more ${configuration_identifier}_last_make_protocol
603	fi
604	done
605	if [[ $answer = k ]]
606	then
607	locat=user_abort; exit
608	fi
609	else
610	# ABORT ANYWAY
611	locat=user_abort; exit
612	fi
613	fi
614
615	# NOW COMPILE THE PALM CODE
616	# COMMANDS WILL BE COMMUNICATED TO SSH VIA PIPE, SINCE THIS WAY THE SYSTEM- AND
617	# USER-PROFILES OF THE SHELL ARE COMPLETELY EXECUTED (OTHERWISE, MAKE
618	# MAY E.G. MISS THE COMPILER-PATHS)
619	if [[ $silent = false ]]
620	then
621	echo " "
622	echo " *** compile PALM sources on remote host"
623	fi
624	make_call_string="make $make_options PROG=$program_name F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$compiler_options\" LDFLAGS=\"$linker_options\" "
625	### echo "$login_init_cmd $module_commands cd ${make_depository}; echo $make_call_string > LAST_MAKE_CALL; chmod u+x LAST_MAKE_CALL; $make_call_string; [[ \$? != 0 ]] && echo MAKE_ERROR" \| ssh -q $ssh_key ${remote_username}@${remote_ip} 2>&1 \| tee ${configuration_identifier}_last_make_protocol
626	ssh -q $ssh_key ${remote_username}@${remote_ip} "$login_init_cmd $module_commands cd ${make_depository}; echo $make_call_string > LAST_MAKE_CALL; chmod u+x LAST_MAKE_CALL; $make_call_string; [[ \$? != 0 ]] && echo MAKE_ERROR" 2>&1 \| tee ${configuration_identifier}_last_make_protocol
627
628	if [[ $(grep -c MAKE_ERROR ${configuration_identifier}_last_make_protocol) != 0 ]]
629	then
630	printf "\a\n +++ error(s) occurred during compiling or linking for host configuration \"$configuration_identifier\" "
631	if [[ $silent = false ]]
632	then
633	answer=dummy
634	printf "\n"
635	while [[ "$answer" != c && "$answer" != k ]]
636	do
637	printf " >>> continue / list errors / kill palmbuild (c/l/k) ? "
638	read answer
639	if [[ "$answer" = l ]]
640	then
641	more ${configuration_identifier}_last_make_protocol
642	fi
643	done
644	if [[ $answer = k ]]
645	then
646	locat=user_abort; exit
647	fi
648	else
649	# ABORT ANYWAY
650	locat=user_abort; exit
651	fi
652	fi
653
654	# TAR UPDATED VERSION ON THE REMOTE HOST
655	if [[ $silent = false ]]
656	then
657	printf "\n *** tar update on remote host ..."
658	fi
659	ssh -q $ssh_key ${remote_username}@${remote_ip} "cd ${make_depository}; chmod u+w ; tar -cf ${program_name}_current_version.tar ${program_name} .f90 .o .mod *.x" 2>&1
660
661
662	# NOW COMES THE BRANCH FOR CREATING THE EXECUTABLE FOR THE CURRENT RUN
663	# INCLUDING E.G. USER-INTERFACE ROUTINES. ALSO ADD OTHER UTILITY EXECUTABLES. EVERYTHING IS
664	# COLLECTED IN DIRECTORY SOURCES_FOR_RUN_...
665	elif [[ "$run_identifier" != "" ]]
666	then
667
668	# FIRST CHECK, IF COMPILED SOURCES FOR THIS RUN IDENTIFIER EXISTS
669	# AND ASK, IF THEY SHALL BE USED
670	ssh -q $ssh_key ${remote_username}@${remote_ip} "[[ -d ${fast_io_catalog}/${sources_for_run_catalog} ]] && echo sources for run found" 2>&1 > ${configuration_identifier}_last_make_protocol
671	if [[ $(grep -c "sources for run found" ${configuration_identifier}_last_make_protocol) != 0 && $use_existing_sources_folder = true ]]
672	then
673	printf "\a\n *** compiled sources for run \"$run_identifier\" found on remote host in folder"
674	printf "\n ${fast_io_catalog}/${sources_for_run_catalog}"
675	printf "\n will be used!"
676	exit
677	fi
678
679	# COPY MAKE DEPOSITORY ON REMOTE MACHINE TO SOURCES_FOR_RUN_...
680	if [[ $silent = false ]]
681	then
682	printf "\n *** copy MAKE_DEPOSITORY_${configuration_identifier} on remote host to $sources_for_run_catalog \n"
683	fi
684	ssh -q $ssh_key ${remote_username}@${remote_ip} "rm -rf ${fast_io_catalog}/${sources_for_run_catalog}; mkdir -p ${fast_io_catalog}/${sources_for_run_catalog}; cp ${make_depository}/${program_name}_current_version.tar ${fast_io_catalog}/${sources_for_run_catalog}; cd ${fast_io_catalog}/${sources_for_run_catalog}; tar xf ${program_name}_current_version.tar" 2>&1
685
686
687	# COPY CONTENTS OF SOURCES_FOR_RUN_... TO SOURCES_FOR_RUN_... ON THE REMOTE MACHINE
688	if [[ $silent = false ]]
689	then
690	printf "\n *** copy ${base_directory}/${sources_for_run_catalog}"
691	printf "\n to $sources_for_run_catalog on remote host \n"
692	fi
693	scp -q $ssh_key ${base_directory}/${sources_for_run_catalog}/{,.[!.]} ${remote_username}@${remote_ip}:${fast_io_catalog}/${sources_for_run_catalog}
694
695
696	# CREATE EXECUTABLE FROM THE NEW/MODIFIED SOURCE FILES, IF THERE ARE ANY
697	if [[ $(ls -1 ${base_directory}/${sources_for_run_catalog}/ \| grep -c .$suf) != 0 ]]
698	then
699
700	make_call_string="make $make_options PROG=$program_name F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$compiler_options\" LDFLAGS=\"$linker_options\" "
701	[[ "$login_init_cmd" != "" ]] && login_init_cmd=${login_init_cmd}";"
702	[[ "$module_commands" != "" ]] && module_commands=${module_commands}";"
703	if [[ $silent = false ]]
704	then
705	echo " *** execute \"make\" on remote host"
706	fi
707	ssh -q $ssh_key ${remote_username}@${remote_ip} "$login_init_cmd $module_commands cd ${fast_io_catalog}/${sources_for_run_catalog}; echo $make_call_string > LAST_MAKE_CALL; chmod u+x LAST_MAKE_CALL; $make_call_string; [[ \$? != 0 ]] && echo MAKE_ERROR" 2>&1 \| tee ${configuration_identifier}_last_make_protocol
708
709	if [[ $(grep -c MAKE_ERROR ${configuration_identifier}_last_make_protocol) != 0 ]]
710	then
711	printf "\a\n +++ error(s) occurred during compiling or linking for host configuration \"$configuration_identifier\" "
712	if [[ $silent = false ]]
713	then
714	answer=dummy
715	printf "\n"
716	while [[ "$answer" != c && "$answer" != k ]]
717	do
718	printf " >>> continue / list errors / kill palmbuild (c/l/k) ? "
719	read answer
720	if [[ "$answer" = l ]]
721	then
722	more ${configuration_identifier}_last_make_protocol
723	fi
724	done
725	if [[ $answer = k ]]
726	then
727	ssh -q $ssh_key ${remote_username}@${remote_ip} "rm -rf ${fast_io_catalog}/${sources_for_run_catalog}" 2>&1
728	locat=user_abort; exit
729	fi
730	else
731	# ABORT ANYWAY
732	ssh -q $ssh_key ${remote_username}@${remote_ip} "rm -rf ${fast_io_catalog}/${sources_for_run_catalog}" 2>&1
733	locat=user_abort; exit
734	fi
735	fi
736
737	else
738
739	echo " *** nothing to compile for this run"
740
741	fi
742
743	fi
744
745	rm -rf ${source_path}/${configuration_identifier}_last_make_protocol
746
747
748	# MAKE ON LOCAL HOST
749	else
750
751
752	# NEXT IS THE BRANCH FOR CREATING THE MAKE_DEPOSITORY_... ON THE
753	# LOCAL HOST
754	if [[ "$run_identifier" = "" ]]
755	then
756
757	# SET THE ENVIRONMENT (EXECUTE INIT AND MODULE COMMANDS)
758	if [[ "$login_init_cmd" != "" ]]
759	then
760	eval $login_init_cmd
761	fi
762
763	if [[ "$module_commands" != "" ]]
764	then
765	eval $module_commands
766	fi
767
768	# next is required to evaluate environment variables or commands used in the linker option
769	eval linker_options=\"$linker_options\"
770
771	# CREATE MAKE-DEPOSITORY, IF IT DOES NOT EXIST
772	eval make_depository=$make_depository
773	if [[ ! -d $make_depository ]]
774	then
775	if mkdir -p $make_depository
776	then
777	if [[ $silent = false ]]
778	then
779	printf "\n\n *** directory for local make depository:"
780	printf "\n $make_depository"
781	printf "\n was created\n"
782	fi
783	else
784	printf "\n +++ directory for local make depository:"
785	printf "\n $make_depository"
786	printf "\n cannot be created"
787	locat=local_depository; exit
788	fi
789	fi
790
791	# COPY SOURCE-CODE FROM REPOSITORY TO MAKE-DEPOSITORY
792	if [[ $silent = false ]]
793	then
794	echo " "
795	echo " *** untar current source sources on local host in"
796	echo " $make_depository"
797	fi
798	cd $make_depository
799	cp $source_path/${program_name}_sources.tar .
800	tar xf ${program_name}_sources.tar
801
802
803	# FIRST CREATE EXECUTABLES FOR THE UTILITY ROUTINES
804	if [[ $silent = false ]]
805	then
806	echo " "
807	echo " *** creating utilities on local host"
808	fi
809	make -f Makefile_utilities $make_options F90=$compiler_name F90_SER=$compiler_name_ser COPT="$cpp_options" F90FLAGS="$compiler_options" LDFLAGS="$linker_options" \| tee ${configuration_identifier}_last_make_protocol
810
811	if [[ ${PIPESTATUS[0]} != 0 ]]
812	then
813	printf "\a\n +++ error(s) occurred during compiling of the utilities for host configuration \"$configuration_identifier\" "
814	if [[ $silent = false ]]
815	then
816	answer=dummy
817	printf "\n"
818	while [[ "$answer" != c && "$answer" != k ]]
819	do
820	printf " >>> continue / list errors / kill palmbuild (c/l/k) ? "
821	read answer
822	if [[ "$answer" = l ]]
823	then
824	more ${configuration_identifier}_last_make_protocol
825	fi
826	done
827	if [[ $answer = k ]]
828	then
829	locat=user_abort; exit
830	fi
831	else
832	# ABORT ANYWAY
833	locat=user_abort; exit
834	fi
835	else
836	cp agent_preprocessing $source_path/../SCRIPTS/.
837	cp inifor $source_path/../SCRIPTS/.
838	fi
839
840
841	# CALL MAKE ON LOCAL HOST USING THE OPTIONS DETERMINED FURTHER ABOVE
842	if [[ $silent = false ]]
843	then
844	echo " "
845	echo " *** compile PALM sources on local host"
846	fi
847
848	make $make_options PROG=$program_name F90=$compiler_name COPT="$cpp_options" F90FLAGS="$compiler_options" LDFLAGS="$linker_options" 2>&1 \| tee ${configuration_identifier}_last_make_protocol
849
850	if [[ ${PIPESTATUS[0]} != 0 ]]
851	then
852	printf "\a\n +++ error(s) occurred during compiling or linking for host configuration \"$configuration_identifier\" "
853	if [[ $silent = false ]]
854	then
855	answer=dummy
856	printf "\n"
857	while [[ "$answer" != c && "$answer" != k ]]
858	do
859	printf " >>> continue / list errors / kill palmbuild (c/l/k) ? "
860	read answer
861	if [[ "$answer" = l ]]
862	then
863	more ${configuration_identifier}_last_make_protocol
864	fi
865	done
866	if [[ $answer = k ]]
867	then
868	locat=user_abort; exit
869	fi
870	else
871	# ABORT ANYWAY
872	locat=user_abort; exit
873	fi
874	fi
875
876
877	# TAR NEW VERSION ON LOCAL HOST
878	if [[ $silent = false ]]
879	then
880	printf "\n *** tar update on local host ..."
881	fi
882	tar -cf ${program_name}_current_version.tar ${program_name} .$suf .o .mod .x
883
884	else
885
886	# NOW COMES THE BRANCH FOR CREATING THE EXECUTABLE FOR THE CURRENT RUN
887	# INCLUDING E.G. USER-INTERFACE ROUTINES. ALSO ADD OTHER UTILITY EXECUTABLES. EVERYTHING IS
888	# COLLECTED IN DIRECTORY SOURCES_FOR_RUN_...
889
890	# FIRST CHECK, IF COMPILED SOURCES FOR THIS RUN IDENTIFIER EXISTS
891	# AND ASK, IF THEY SHALL BE USED
892	if [[ -d ${fast_io_catalog}/${sources_for_run_catalog} && $use_existing_sources_folder = true ]]
893	then
894	printf "\a\n *** compiled sources for run \"$run_identifier\" found on local host in folder"
895	printf "\n ${fast_io_catalog}/${sources_for_run_catalog}"
896	printf "\n will be used!"
897	exit
898	fi
899
900	# SECOND CHECK, IF A DEPOSITORY EXISTS ON THE LOCAL MACHINE
901	if [[ ! -d ${make_depository} ]]
902	then
903	printf "\n +++ directory for local make depository:"
904	printf "\n $make_depository"
905	printf "\n not found. Please run \"palmbuild -c $configuration_identifier\" "
906	locat=make_depository; exit
907	fi
908
909
910	# COPY MAKE DEPOSITORY ON LOCAL MACHINE TO SOURCES_FOR_RUN_...
911	if [[ $silent = false ]]
912	then
913	printf "\n *** copy MAKE_DEPOSITORY_${configuration_identifier} on local host to "
914	printf "\n ${fast_io_catalog}/${sources_for_run_catalog} \n"
915	fi
916	rm -rf ${fast_io_catalog}/${sources_for_run_catalog}
917	mkdir -p ${fast_io_catalog}/${sources_for_run_catalog}
918	cp ${make_depository}/${program_name}_current_version.tar ${fast_io_catalog}/${sources_for_run_catalog}
919	cd $fast_io_catalog/${sources_for_run_catalog}
920	tar xf ${program_name}_current_version.tar
921
922
923	# COPY CONTENTS OF SOURCES_FOR_RUN_... TO SOURCES_FOR_RUN_...
924	# IN THE FAST_IO_CATALOG ON THE LOCAL MACHINE
925	if [[ $silent = false ]]
926	then
927	printf "\n *** copy ${base_directory}/${sources_for_run_catalog} to"
928	printf "\n ${fast_io_catalog}/${sources_for_run_catalog} on local host \n"
929	fi
930	cp ${base_directory}/${sources_for_run_catalog}/{,.[!.]} ${fast_io_catalog}/${sources_for_run_catalog}
931
932
933	# CREATE EXECUTABLE FROM THE NEW/MODIFIED SOURCE FILES, IF THERE ARE ANY
934	if [[ $(ls -1 ${base_directory}/${sources_for_run_catalog}/ \| grep -c .$suf) != 0 ]]
935	then
936
937	if [[ $silent = false ]]
938	then
939	echo " *** execute \"make\" on local host"
940	fi
941	[[ "$login_init_cmd" != "" ]] && eval $login_init_cmd
942	[[ "$module_commands" != "" ]] && eval $module_commands
943
944	# next is required to evaluate environment variables or commands used in the linker option
945	eval linker_options=\"$linker_options\"
946
947	make $make_options PROG=$program_name F90=$compiler_name COPT="$cpp_options" F90FLAGS="$compiler_options" LDFLAGS="$linker_options"
948
949	if [[ ${PIPESTATUS[0]} != 0 ]]
950	then
951
952	printf "\a\n +++ error(s) occurred during compiling or linking for host configuration \"$configuration_identifier\" "
953	if [[ $silent = false ]]
954	then
955	answer=dummy
956	printf "\n"
957	while [[ "$answer" != c && "$answer" != k ]]
958	do
959	printf " >>> continue / kill palmbuild (c/k) ? "
960	read answer
961	done
962	if [[ $answer = k ]]
963	then
964	rm -rf ${fast_io_catalog}/${sources_for_run_catalog}
965	locat=user_abort; exit
966	fi
967	else
968	# ABORT ANYWAY
969	rm -rf ${fast_io_catalog}/${sources_for_run_catalog}
970	locat=user_abort; exit
971	fi
972	fi
973
974	else
975
976	echo " *** nothing to compile for this run"
977
978	fi
979
980	fi
981	fi

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