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source: palm/trunk/SCRIPTS/palmbuild @ 3485

Last change on this file since 3485 was 3455, checked in by raasch, 6 years ago
options -h and -d renamed -c and -r, respectively, job_queue renamed job_logfiles in sveral configuration files
Property svn:executable set to ``* Property svn:keywords set to `Id Rev`
File size: 32.9 KB

Line
1	#!/bin/bash
2
3	# palmbuild - script for compiling the PALM code and its utility programs
4
5	#------------------------------------------------------------------------------#
6	# This file is part of the PALM model system.
7	#
8	# PALM is free software: you can redistribute it and/or modify it under the terms
9	# of the GNU General Public License as published by the Free Software Foundation,
10	# either version 3 of the License, or (at your option) any later version.
11	#
12	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
13	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
14	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
15	#
16	# You should have received a copy of the GNU General Public License along with
17	# PALM. If not, see <http://www.gnu.org/licenses/>.
18	#
19	# Copyright 2017-2018 Leibniz Universitaet Hannover
20	#------------------------------------------------------------------------------#
21	#
22	# Current revisions:
23	# ------------------
24	#
25	#
26	# Former revisions:
27	# -----------------
28	# $Id: palmbuild 3455 2018-10-30 14:12:31Z gronemeier $
29	# options -h and -d renamed -c and -r, respectively
30	#
31	# 3312 2018-10-06 14:15:46Z knoop
32	# "host identifier" in header output renamed "config. identifier",
33	# host_configuration renamed configuration_identifier,
34	# jobname renamed run_identifier
35	# header output of PALM code revision,
36	# options -m, -s, and -S removed
37	#
38	# 3210 2018-08-28 07:31:13Z sward
39	# Bugfix: agent_preprocessing stays in MAKE_DEPOSITORY after compilation
40	#
41	# 3208 2018-08-27 13:10:50Z sward
42	# Added building of agent_preprocessing
43	#
44	# 3033 2018-05-23 15:26:19Z raasch
45	# "fname" renamed to "jobname"
46	#
47	# 2718 2018-01-02 08:49:38Z maronga
48	# Corrected "Former revisions" section
49	#
50	# 2696 2017-12-14 17:12:51Z kanani
51	# Change in file header (GPL part)
52	#
53	# 2566 2017-10-20 08:50:47Z raasch
54	# informative messages switched of almost completely in silent mode
55	# two header blocks merged into one
56	#
57	# 2506 2017-09-29 08:30:37Z raasch
58	# option -V added to check for an existing SOURCES_FOR_RUN_... folder
59	# host configuration added to SOURCES_FOR_RUN_... folder name
60	# SOURCES_FOR_RUN_... folder is deleted in case of compilation errors
61	# host_identifier renamed host_configuration
62	#
63	# 2500 2017-09-25 11:10:03Z raasch
64	# bugfix for r2492
65	#
66	# 2492 2017-09-21 14:18:48Z raasch
67	# ask for compilation, if SOURCES_FOR_RUN_... exists
68	#
69	# 2487 2017-09-21 11:30:10Z raasch
70	# bugfix: abort in case of compiling/linking errors in silent mode
71	#
72	# 2422 2017-09-08 08:25:41Z raasch
73	# initial revision
74	#
75	#------------------------------------------------------------------------------#
76	# palmbuild - script for compiling the PALM code and its utility programs
77	#
78	# Procedure to compile code on local and remote hosts using the
79	# make-mechanism. The source code must be provided on the local host.
80	#
81	# @note This script does not work on MAC OS
82	#------------------------------------------------------------------------------#
83
84
85	# VARIABLE DECLARATIONS + DEFAULT VALUES
86	calltime=""
87	column1=""
88	column2=""
89	configuration_identifier=default
90	global_revision=""
91	locat=normal
92	makefile=""
93	make_options=""
94	module_commands=""
95	program_name=palm
96	remote_ip=""
97	silent=false
98	ssh_key=""
99	suf=f90
100	use_existing_sources_folder=false
101	version="palmbuild 1.0 Rev$Rev: 3455 $"
102	working_directory=`pwd`
103
104
105	# ERROR HANDLING IN CASE OF EXIT
106	trap 'rm -rf ${source_path}/${configuration_identifier}_last_make_protocol
107	if [[ $locat != normal && $locat != control_c ]]
108	then
109	printf "\n\n+++ palmbuild crashed \n\n"
110	exit 1
111	elif [[ $locat != normal ]]
112	then
113	printf "\n+++ palmbuild killed by \"^C\" \n\n"
114	exit 2
115	else
116	if [[ $silent = false ]]
117	then
118	printf "\n --> palmbuild finished\n\n"
119	fi
120	exit 0
121	fi' exit
122
123
124	# ACTIONS IN CASE OF TERMINAL-BREAK (CONTROL-C):
125	trap 'locat=control_c
126	exit 1
127	' 2
128
129
130
131	# READ SHELLSCRIPT-OPTIONS
132	while getopts :c:r:uvV option
133	do
134	case $option in
135	(c) configuration_identifier=$OPTARG;;
136	(r) run_identifier=$OPTARG;;
137	(v) silent=true;;
138	(V) use_existing_sources_folder=true;;
139	(\?) printf "\n +++ unknown option $OPTARG \n";
140	locat=parameter; exit;;
141	esac
142	done
143
144
145	# BUILD THE CONFIGURATION-FILE NAME AND THE SOURCES_FOR_RUN-FOLDER NAME
146	config_file=.palm.config.$configuration_identifier
147	sources_for_run_catalog=SOURCES_FOR_RUN_${configuration_identifier}_$run_identifier
148
149
150	# CHECK, IF CONFIGURATION-FILE EXISTS
151	if [[ ! -f $config_file ]]
152	then
153	printf "\n +++ configuration file: "
154	printf "\n $config_file"
155	printf "\n does not exist"
156	locat=configuration; exit
157	fi
158
159
160	# ### is this really required?
161	config_file=$PWD/$config_file
162
163
164	# READ VARIABLE SETTINGS FROM CONFIG FILE LINE BY LINE
165	while read line
166	do
167
168	# FIRST REPLACE ENVIRONMENT-VARIABLES BY THEIR RESPECTIVE VALUES
169	eval line=\"$line\"
170
171
172	# INTERPRET THE LINE
173	if [[ "$(echo $line)" = "" ]]
174	then
175
176	# EMPTY LINE, NO ACTION
177	continue
178
179	elif [[ "$(echo $line \| cut -c1)" = "#" ]]
180	then
181
182	# LINE IS A COMMENT LINE
183	continue
184
185	elif [[ "$(echo $line \| cut -c1)" = "%" ]]
186	then
187
188	# LINE DEFINES AN ENVIRONMENT-VARIABLE
189	var=`echo $line \| cut -d" " -s -f1 \| cut -c2-`
190	value=`echo $line \| cut -d" " -s -f2-`
191
192	# REPLACE ":" BY " " IN COMPILER- CPP- OR LINKER-OPTIONS,
193	# "::" IS REPLACED BY ":".
194	#value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
195
196
197	# VALUE FROM THE CONFIGURATION-FILE IS ASSIGNED TO THE
198	# ENVIRONMENT-VARIABLE, BUT ONLY IF NO VALUE HAS BEEN ALREADY
199	# ASSIGNED WITHIN THIS SCRIPT (E.G. BY SCRIPT-OPTIONS).
200	# NON-ASSIGNED VARIABLES HAVE VALUE "" OR 0 (IN CASE OF INTEGER).
201	# HENCE THE GENERAL RULE IS: SCRIPT-OPTION OVERWRITES THE
202	# CONFIGURATION-FILE.
203	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
204	then
205	eval export $var="\$value"
206
207	# TERMINAL OUTPUT OF ENVIRONMENT-VARIABLES, IF TRACEBACK IS SWITCHED on
208	if [[ $do_trace = true ]]
209	then
210	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
211	fi
212	fi
213
214	else
215
216	# SKIP ALL OTHER LINES
217	continue
218
219	fi
220
221	done < $config_file
222
223
224	# CHECK, IF THE BASE DIRECTORY PATH HAS BEEN GIVEN
225	if [[ "$base_directory" = "" ]]
226	then
227	printf "\n +++ no base directory found in configuration file"
228	locat=config_file; exit
229	else
230	if [[ ! -d $base_directory ]]
231	then
232	printf "\n\n +++ base directory \"$base_directory\" "
233	printf "\n does not exist"
234	locat=source_path; exit
235	fi
236	fi
237
238
239	# CHECK SOURCE-CODE PATH
240	if [[ "$source_path" = "" ]]
241	then
242	printf "\n +++ no source path found in configuration file"
243	locat=config_file; exit
244	else
245	if [[ ! -d $source_path ]]
246	then
247	printf "\n\n +++ source path \"$source_path\" "
248	printf "\n does not exist"
249	locat=source_path; exit
250	fi
251	fi
252
253
254	# CHECK MAKEFILE
255	makefile=$source_path/Makefile
256	if [[ ! -f $makefile ]]
257	then
258	printf "\n +++ makefile: "
259	printf "\n $makefile"
260	printf "\n does not exist"
261	locat=makefile; exit
262	fi
263
264
265	# CHECK COMPILERNAME
266	if [[ "$compiler_name" = "" ]]
267	then
268	printf "\n +++ no compiler name found in configuration file"
269	locat=config_file; exit
270	fi
271
272
273	# CHECK SERIAL COMPILERNAME
274	if [[ "$compiler_name_ser" = "" ]]
275	then
276	printf "\n +++ no compiler name for serial compilation in configuration file"
277	locat=config_file; exit
278	fi
279
280
281	# DETERMINE SSH-KEY TO BE USED
282	if [[ "$ssh_key" != "" ]]
283	then
284	ssh_key="-i $HOME/.ssh/`echo $line \| cut -d" " -s -f2`"
285	fi
286
287
288	#CHECK CPP-OPTIONS
289	if [[ "$cpp_options" = "" ]]
290	then
291	printf "\n +++ WARNING: no cpp-options found in configuration file"
292	fi
293
294
295	# CHECK SETTINGS IN CASE OF COMPILING ON REMOTE MACHINE
296	if [[ "$remote_ip" != "" ]]
297	then
298
299	if [[ "$remote_username" = "" ]]
300	then
301	printf "\n +++ no user name given in configuration file"
302	locat=config_file; exit
303	fi
304
305	# GET SOURCE AND DEPOSITORY PATH ON THE REMOTE MACHINE WITHOUT EVALUATING
306	# THE $
307	# IF NOT GIVEN, USE THE LOCAL SOURCE AND DEPOSITORY PATH
308	line=`grep %remote_source_path $config_file`
309	if [[ "$line" != "" ]]
310	then
311	remote_source_path=`echo $line \| cut -d" " -s -f2`
312	else
313	line=`grep %source_path $config_file`
314	remote_source_path=`echo $line \| cut -d" " -s -f2`
315	fi
316
317	line=`grep %base_directory $config_file`
318	make_depository=`echo $line \| cut -d" " -s -f2`/MAKE_DEPOSITORY_${configuration_identifier}
319
320	else
321
322	make_depository=${base_directory}/MAKE_DEPOSITORY_${configuration_identifier}
323
324	fi
325
326
327	# GET THE GLOBAL REVISION-NUMBER OF THE SVN-REPOSITORY
328	global_revision=`svnversion $source_path 2>/dev/null`
329	global_revision="Rev: $global_revision"
330
331
332	# HEADER-OUTPUT (PART1: MESSAGES CONCERNING THE LOCAL HOST)
333	if [[ $silent = false ]]
334	then
335	calltime=$(date)
336	printf "\n"
337	printf "#------------------------------------------------------------------------# \n"
338	printf "\| %-40s%30s \| \n" "$version" "$calltime"
339	printf "\| %-40s%30s \| \n" "PALM code $global_revision" " "
340	printf "\| \| \n"
341	printf "\| %-13s%-57s \| \n" "called on:" "$(hostname) (IP:$local_ip)"
342	column2=$(echo $config_file \| cut -c1-57 )
343	printf "\| %-13s%-57s \| \n" "config file:" "$column2"
344	line=$(echo "$config_file" \| cut -c58-)
345	while [[ "$line" != "" ]]
346	do
347	column1=""
348	column2=$(echo $line \| cut -c1-57 )
349	printf "\| %-13s%-57s \| \n" "$column1" "$column2"
350	line=$(echo "$line" \| cut -c58-)
351	done
352	column2=$(echo $makefile \| cut -c1-57 )
353	printf "\| %-13s%-57s \| \n" "makefile:" "$column2"
354	line=$(echo "$makefile" \| cut -c58-)
355	while [[ "$line" != "" ]]
356	do
357	column1=""
358	column2=$(echo $line \| cut -c1-57 )
359	printf "\| %-13s%-57s \| \n" "$column1" "$column2"
360	line=$(echo "$line" \| cut -c58-)
361	done
362	column2=$(echo $source_path \| cut -c1-57 )
363	printf "\| %-13s%-57s \| \n" "source path:" "$column2"
364	line=$(echo "$source_path" \| cut -c58-)
365	while [[ "$line" != "" ]]
366	do
367	column1=""
368	column2=$(echo $line \| cut -c1-57 )
369	printf "\| %-13s%-57s \| \n" "$column1" "$column2"
370	line=$(echo "$line" \| cut -c58-)
371	done
372	printf "\| \| \n"
373
374	if [[ "$remote_ip" != "" ]]
375	then
376	column2="$configuration_identifier"
377	printf "\| %-20s%-50s \| \n" "config. identifier:" "$column2"
378	column2=$(echo "$make_depository" \| cut -c1-50 )
379	printf "\| %-20s%-50s \| \n" "remote depository:" "$column2"
380	else
381	column2="$configuration_identifier"
382	printf "\| %-20s%-50s \| \n" "config. identifier:" "$column2"
383	column2=$(echo "$make_depository" \| cut -c1-50 )
384	printf "\| %-20s%-50s \| \n" "local depository:" "$column2"
385	fi
386	line=$(echo "$make_depository" \| cut -c51-)
387	while [[ "$line" != "" ]]
388	do
389	column1=""
390	column2=$(echo "$line" \| cut -c1-50 )
391	printf "\| %-20s%-50s \| \n" "$column1" "$column2"
392	line=$(echo "$line" \| cut -c51-)
393	done
394
395	if [[ "$remote_ip" != "" ]]
396	then
397	printf "\| %-20s%-50s \| \n" "remote username:" "$remote_username"
398	printf "\| %-20s%-50s \| \n" "remote address:" "$remote_ip"
399	else
400	printf "\| %-20s%-50s \| \n" "username:" "$local_username"
401	printf "\| %-20s%-50s \| \n" "address:" "$local_ip"
402	fi
403
404	printf "\| %-20s%-50s \| \n" "compiler:" "$compiler_name"
405	printf "\| %-20s%-50s \| \n" "serial compiler:" "$compiler_name_ser"
406
407	if [[ "$make_options" != "" ]]
408	then
409	printf "\| %-20s%-50s \| \n" "make options:" "$make_options"
410	fi
411	column2=$(echo "$cpp_options" \| cut -c1-50 )
412	printf "\| %-20s%-50s \| \n" "cpp options:" "$column2"
413	line=$(echo "$cpp_options" \| cut -c51-)
414	while [[ "$line" != "" ]]
415	do
416	column1=""
417	column2=$(echo "$line" \| cut -c1-50 )
418	printf "\| %-20s%-50s \| \n" "$column1" "$column2"
419	line=$(echo "$line" \| cut -c51-)
420	done
421	column2=$(echo "$compiler_options" \| cut -c1-50 )
422	printf "\| %-20s%-50s \| \n" "compiler options:" "$column2"
423	line=$(echo "$compiler_options" \| cut -c51-)
424	while [[ "$line" != "" ]]
425	do
426	column1=""
427	column2=$(echo "$line" \| cut -c1-50 )
428	printf "\| %-20s%-50s \| \n" "$column1" "$column2"
429	line=$(echo "$line" \| cut -c51-)
430	done
431	column2=$(echo "$linker_options" \| cut -c1-50 )
432	printf "\| %-20s%-50s \| \n" "linker options:" "$column2"
433	line=$(echo "$linker_options" \| cut -c51-)
434	while [[ "$line" != "" ]]
435	do
436	column1=""
437	column2=$(echo "$line" \| cut -c1-50 )
438	printf "\| %-20s%-50s \| \n" "$column1" "$column2"
439	line=$(echo "$line" \| cut -c51-)
440	done
441	if [[ "$login_init_cmd" != "" ]]
442	then
443	column2=$(echo "$login_init_cmd" \| cut -c1-50 )
444	printf "\| %-20s%-50s \| \n" "login init command:" "$column2"
445	line=$(echo "$login_init_cmd" \| cut -c51-)
446	while [[ "$line" != "" ]]
447	do
448	column1=""
449	column2=$(echo "$line" \| cut -c1-50 )
450	printf "\| %-20s%-50s \| \n" "$column1" "$column2"
451	line=$(echo "$line" \| cut -c51-)
452	done
453	fi
454	if [[ "$module_commands" != "" ]]
455	then
456	column2=$(echo "$module_commands" \| cut -c1-50 )
457	printf "\| %-20s%-50s \| \n" "module command(s):" "$column2"
458	line=$(echo "$module_commands" \| cut -c51-)
459	while [[ "$line" != "" ]]
460	do
461	column1=""
462	column2=$(echo "$line" \| cut -c1-50 )
463	printf "\| %-20s%-50s \| \n" "$column1" "$column2"
464	line=$(echo "$line" \| cut -c51-)
465	done
466	fi
467	printf "#------------------------------------------------------------------------# \n"
468
469	answer=dummy
470	printf "\n"
471	while [[ "$answer" != y && "$answer" != Y && "$answer" != c && "$answer" != C && "$answer" != s && "$answer" != S && "$answer" != a && "$answer" != A ]]
472	do
473	printf " >>> continue (y(es)/c(ontinue)/a(bort)) ? "
474	read answer
475	done
476	if [[ $answer = a \|\| $answer = A ]]
477	then
478	locat=user_abort; exit
479	fi
480	if [[ $answer = c \|\| $answer = C ]]
481	then
482	silent=true
483	fi
484	fi
485
486
487	# TAR THE SOURCES AND MAKEFILES
488	# UTILITIES ARE TEMPORARILY COPIED TO THE SOURCE DIRECTORY IN ORDER TO TAR
489	# THEM TOO
490	if [[ $silent = false ]]
491	then
492	printf "\n\n *** tar of makefile and source files in"
493	printf "\n $source_path\n"
494	fi
495	cd $source_path
496	cp -p ../UTIL/combine_plot_fields.f90 .
497	cp -p ../UTIL/compare_palm_logs.f90 .
498	cp -p ../UTIL/agent_preprocessing/agent_preprocessing.f90 .
499	cp -p ../UTIL/Makefile_utilities .
500	tar -cf ${program_name}_sources.tar Makefile* *.$suf
501	rm combine_plot_fields.f90 compare_palm_logs.f90 agent_preprocessing.f90 Makefile_utilities
502
503
504	# MAKE ON REMOTE HOST
505	if [[ "$remote_ip" != "" ]]
506	then
507
508	# NEXT IS THE BRANCH FOR CREATING THE MAKE_DEPOSITORY_...
509	if [[ "$run_identifier" = "" ]]
510	then
511
512	# COPY CURRENT SOURCE CODE TO SOURCE-CODE DIRECTORY ON THE REMOTE HOST
513	# CREATE THIS DIRECTORY, IF IT DOES NOT EXIST
514	if [[ $silent = false ]]
515	then
516	echo " "
517	echo " *** copying \"${program_name}_sources.tar\" to \"${remote_ip}:${make_depository}/\" "
518	echo "[[ ! -d ${make_depository} ]] && (echo \" *** ${make_depository} will be created\"; mkdir -p ${make_depository})" \| ssh -q $ssh_key ${remote_username}@${remote_ip} 2>&1
519	scp $ssh_key ${source_path}/${program_name}_sources.tar ${remote_username}@${remote_ip}:${make_depository}/${program_name}_sources.tar
520	else
521	echo "[[ ! -d ${make_depository} ]] && mkdir -p ${make_depository}" \| ssh -q $ssh_key ${remote_username}@${remote_ip} 2>&1
522	scp $ssh_key ${source_path}/${program_name}_sources.tar ${remote_username}@${remote_ip}:${make_depository}/${program_name}_sources.tar > /dev/null
523	fi
524
525
526
527
528	# UNTAR PREVIOUS UPDATE ON REMOTE HOST, IF EXISTING
529	if [[ $silent = false ]]
530	then
531	echo " *** untar previous update on remote host, if existing"
532	fi
533	echo "cd ${make_depository}; [[ -f ${program_name}_current_version.tar ]] && tar -xf ${program_name}_current_version.tar" \| ssh -q $ssh_key ${remote_username}@${remote_ip} 2>&1
534
535
536	# UNTAR CURRENT SOURCES ON REMOTE HOST
537	if [[ $silent = false ]]
538	then
539	echo " *** untar current sources on remote host"
540	fi
541	echo "cd ${make_depository}; tar -xf ${program_name}_sources.tar" \| ssh -q $ssh_key ${remote_username}@${remote_ip} 2>&1
542
543
544	# CREATE INIT AND MODULE COAMMNDS
545	[[ "$login_init_cmd" != "" ]] && login_init_cmd=${login_init_cmd}";"
546	[[ "$module_commands" != "" ]] && module_commands=${module_commands}";"
547
548
549	# FIRST CREATE EXECUTABLES FOR THE UTILITY ROUTINES
550	if [[ $silent = false ]]
551	then
552	echo " "
553	echo " *** creating utilities on remote host"
554	fi
555	make_call_string="make -f Makefile_utilities $make_options F90=$compiler_name F90_SER=$compiler_name_ser COPT=\"$cpp_options\" F90FLAGS=\"$compiler_options\" LDFLAGS=\"$linker_options\" "
556	echo "$login_init_cmd $module_commands cd ${make_depository}; echo $make_call_string > LAST_MAKE_CALL; chmod u+x LAST_MAKE_CALL; $make_call_string; [[ \$? != 0 ]] && echo MAKE_ERROR" \| ssh -q $ssh_key ${remote_username}@${remote_ip} 2>&1 \| tee ${configuration_identifier}_last_make_protocol
557
558	if [[ $(grep -c MAKE_ERROR ${configuration_identifier}_last_make_protocol) != 0 ]]
559	then
560	printf "\a\n +++ error(s) occurred during compiling or linking of utilities"
561	printf "\n for host configuration \"$configuration_identifier\" "
562	if [[ $silent = false ]]
563	then
564	answer=dummy
565	printf "\n"
566	while [[ "$answer" != c && "$answer" != k ]]
567	do
568	printf " >>> continue / list errors / kill palmbuild (c/l/k) ? "
569	read answer
570	if [[ "$answer" = l ]]
571	then
572	more ${configuration_identifier}_last_make_protocol
573	fi
574	done
575	if [[ $answer = k ]]
576	then
577	locat=user_abort; exit
578	fi
579	else
580	# ABORT ANYWAY
581	locat=user_abort; exit
582	fi
583	fi
584
585	# NOW COMPILE THE PALM CODE
586	# COMMANDS WILL BE COMMUNICATED TO SSH VIA PIPE, SINCE THIS WAY THE SYSTEM- AND
587	# USER-PROFILES OF THE SHELL ARE COMPLETELY EXECUTED (OTHERWISE, MAKE
588	# MAY E.G. MISS THE COMPILER-PATHS)
589	if [[ $silent = false ]]
590	then
591	echo " "
592	echo " *** compile PALM sources on remote host"
593	fi
594	make_call_string="make $make_options PROG=$program_name F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$compiler_options\" LDFLAGS=\"$linker_options\" "
595	echo "$login_init_cmd $module_commands cd ${make_depository}; echo $make_call_string > LAST_MAKE_CALL; chmod u+x LAST_MAKE_CALL; $make_call_string; [[ \$? != 0 ]] && echo MAKE_ERROR" \| ssh -q $ssh_key ${remote_username}@${remote_ip} 2>&1 \| tee ${configuration_identifier}_last_make_protocol
596
597	if [[ $(grep -c MAKE_ERROR ${configuration_identifier}_last_make_protocol) != 0 ]]
598	then
599	printf "\a\n +++ error(s) occurred during compiling or linking for host configuration \"$configuration_identifier\" "
600	if [[ $silent = false ]]
601	then
602	answer=dummy
603	printf "\n"
604	while [[ "$answer" != c && "$answer" != k ]]
605	do
606	printf " >>> continue / list errors / kill palmbuild (c/l/k) ? "
607	read answer
608	if [[ "$answer" = l ]]
609	then
610	more ${configuration_identifier}_last_make_protocol
611	fi
612	done
613	if [[ $answer = k ]]
614	then
615	locat=user_abort; exit
616	fi
617	else
618	# ABORT ANYWAY
619	locat=user_abort; exit
620	fi
621	fi
622
623	# TAR UPDATED VERSION ON THE REMOTE HOST
624	if [[ $silent = false ]]
625	then
626	printf "\n *** tar update on remote host ..."
627	fi
628	echo "cd ${make_depository}; chmod u+w ; tar -cf ${program_name}_current_version.tar ${program_name} .f90 .o .mod *.x" \| ssh -q $ssh_key ${remote_username}@${remote_ip} 2>&1
629
630
631	# NOW COMES THE BRANCH FOR CREATING THE EXECUTABLE FOR THE CURRENT RUN
632	# INCLUDING E.G. USER-INTERFACE ROUTINES. ALSO ADD OTHER UTILITY EXECUTABLES. EVERYTHING IS
633	# COLLECTED IN DIRECTORY SOURCES_FOR_RUN_...
634	elif [[ "$run_identifier" != "" ]]
635	then
636
637	# FIRST CHECK, IF COMPILED SOURCES FOR THIS RUN IDENTIFIER EXISTS
638	# AND ASK, IF THEY SHALL BE USED
639	echo "[[ -d ${fast_io_catalog}/${sources_for_run_catalog} ]] && echo sources for run found" \| ssh -q $ssh_key ${remote_username}@${remote_ip} 2>&1 > ${configuration_identifier}_last_make_protocol
640	if [[ $(grep -c "sources for run found" ${configuration_identifier}_last_make_protocol) != 0 && $use_existing_sources_folder = true ]]
641	then
642	printf "\a\n *** compiled sources for run \"$run_identifier\" found on remote host in folder"
643	printf "\n ${fast_io_catalog}/${sources_for_run_catalog}"
644	printf "\n will be used!"
645	exit
646	fi
647
648	# COPY MAKE DEPOSITORY ON REMOTE MACHINE TO SOURCES_FOR_RUN_...
649	if [[ $silent = false ]]
650	then
651	printf "\n *** copy MAKE_DEPOSITORY_${configuration_identifier} on remote host to $sources_for_run_catalog \n"
652	fi
653	echo "rm -rf ${fast_io_catalog}/${sources_for_run_catalog}; mkdir -p ${fast_io_catalog}/${sources_for_run_catalog}; cp ${make_depository}/${program_name}_current_version.tar ${fast_io_catalog}/${sources_for_run_catalog}; cd ${fast_io_catalog}/${sources_for_run_catalog}; tar xf ${program_name}_current_version.tar" \| ssh -q $ssh_key ${remote_username}@${remote_ip} 2>&1
654
655
656	# COPY CONTENTS OF SOURCES_FOR_RUN_... TO SOURCES_FOR_RUN_... ON THE REMOTE MACHINE
657	if [[ $silent = false ]]
658	then
659	printf "\n *** copy ${base_directory}/${sources_for_run_catalog}"
660	printf "\n to $sources_for_run_catalog on remote host \n"
661	fi
662	scp -q $ssh_key ${base_directory}/${sources_for_run_catalog}/{,.[!.]} ${remote_username}@${remote_ip}:${fast_io_catalog}/${sources_for_run_catalog}
663
664
665	# CREATE EXECUTABLE FROM THE NEW/MODIFIED SOURCE FILES, IF THERE ARE ANY
666	if [[ $(ls -1 ${base_directory}/${sources_for_run_catalog}/ \| grep -c .$suf) != 0 ]]
667	then
668
669	make_call_string="make $make_options PROG=$program_name F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$compiler_options\" LDFLAGS=\"$linker_options\" "
670	[[ "$login_init_cmd" != "" ]] && login_init_cmd=${login_init_cmd}";"
671	[[ "$module_commands" != "" ]] && module_commands=${module_commands}";"
672	if [[ $silent = false ]]
673	then
674	echo " *** execute \"make\" on remote host"
675	fi
676	echo "$login_init_cmd $module_commands cd ${fast_io_catalog}/${sources_for_run_catalog}; echo $make_call_string > LAST_MAKE_CALL; chmod u+x LAST_MAKE_CALL; $make_call_string; [[ \$? != 0 ]] && echo MAKE_ERROR" \| ssh -q $ssh_key ${remote_username}@${remote_ip} 2>&1 \| tee ${configuration_identifier}_last_make_protocol
677
678	if [[ $(grep -c MAKE_ERROR ${configuration_identifier}_last_make_protocol) != 0 ]]
679	then
680	printf "\a\n +++ error(s) occurred during compiling or linking for host configuration \"$configuration_identifier\" "
681	if [[ $silent = false ]]
682	then
683	answer=dummy
684	printf "\n"
685	while [[ "$answer" != c && "$answer" != k ]]
686	do
687	printf " >>> continue / list errors / kill palmbuild (c/l/k) ? "
688	read answer
689	if [[ "$answer" = l ]]
690	then
691	more ${configuration_identifier}_last_make_protocol
692	fi
693	done
694	if [[ $answer = k ]]
695	then
696	echo "rm -rf ${fast_io_catalog}/${sources_for_run_catalog}" \| ssh -q $ssh_key ${remote_username}@${remote_ip} 2>&1
697	locat=user_abort; exit
698	fi
699	else
700	# ABORT ANYWAY
701	echo "rm -rf ${fast_io_catalog}/${sources_for_run_catalog}" \| ssh -q $ssh_key ${remote_username}@${remote_ip} 2>&1
702	locat=user_abort; exit
703	fi
704	fi
705
706	else
707
708	echo " *** nothing to compile for this run"
709
710	fi
711
712	fi
713
714	rm -rf ${source_path}/${configuration_identifier}_last_make_protocol
715
716
717	# MAKE ON LOCAL HOST
718	else
719
720
721	# NEXT IS THE BRANCH FOR CREATING THE MAKE_DEPOSITORY_... ON THE
722	# LOCAL HOST
723	if [[ "$run_identifier" = "" ]]
724	then
725
726	# SET THE ENVIRONMENT (EXECUTE INIT AND MODULE COMMANDS)
727	if [[ "$login_init_cmd" != "" ]]
728	then
729	$login_init_cmd
730	fi
731
732	if [[ "$module_commands" != "" ]]
733	then
734	$module_commands
735	fi
736
737
738	# CREATE MAKE-DEPOSITORY, IF IT DOES NOT EXIST
739	eval make_depository=$make_depository
740	if [[ ! -d $make_depository ]]
741	then
742	if mkdir -p $make_depository
743	then
744	if [[ $silent = false ]]
745	then
746	printf "\n\n *** directory for local make depository:"
747	printf "\n $make_depository"
748	printf "\n was created\n"
749	fi
750	else
751	printf "\n +++ directory for local make depository:"
752	printf "\n $make_depository"
753	printf "\n cannot be created"
754	locat=local_depository; exit
755	fi
756	fi
757
758	# COPY SOURCE-CODE FROM REPOSITORY TO MAKE-DEPOSITORY
759	if [[ $silent = false ]]
760	then
761	echo " "
762	echo " *** untar current source sources on local host in"
763	echo " $make_depository"
764	fi
765	cd $make_depository
766	cp $source_path/${program_name}_sources.tar .
767	tar xf ${program_name}_sources.tar
768
769
770	# FIRST CREATE EXECUTABLES FOR THE UTILITY ROUTINES
771	if [[ $silent = false ]]
772	then
773	echo " "
774	echo " *** creating utilities on local host"
775	fi
776	make -f Makefile_utilities $make_options F90=$compiler_name F90_SER=$compiler_name_ser COPT="$cpp_options" F90FLAGS="$compiler_options" LDFLAGS="$linker_options" \| tee ${configuration_identifier}_last_make_protocol
777
778	if [[ ${PIPESTATUS[0]} != 0 ]]
779	then
780	printf "\a\n +++ error(s) occurred during compiling of the utilities for host configuration \"$configuration_identifier\" "
781	if [[ $silent = false ]]
782	then
783	answer=dummy
784	printf "\n"
785	while [[ "$answer" != c && "$answer" != k ]]
786	do
787	printf " >>> continue / list errors / kill palmbuild (c/l/k) ? "
788	read answer
789	if [[ "$answer" = l ]]
790	then
791	more ${configuration_identifier}_last_make_protocol
792	fi
793	done
794	if [[ $answer = k ]]
795	then
796	locat=user_abort; exit
797	fi
798	else
799	# ABORT ANYWAY
800	locat=user_abort; exit
801	fi
802	else
803	cp agent_preprocessing $source_path/../SCRIPTS/.
804	fi
805
806
807	# CALL MAKE ON LOCAL HOST USING THE OPTIONS DETERMINED FURTHER ABOVE
808	if [[ $silent = false ]]
809	then
810	echo " "
811	echo " *** compile PALM sources on local host"
812	fi
813
814	make $make_options PROG=$program_name F90=$compiler_name COPT="$cpp_options" F90FLAGS="$compiler_options" LDFLAGS="$linker_options" 2>&1 \| tee ${configuration_identifier}_last_make_protocol
815
816	if [[ ${PIPESTATUS[0]} != 0 ]]
817	then
818	printf "\a\n +++ error(s) occurred during compiling or linking for host configuration \"$configuration_identifier\" "
819	if [[ $silent = false ]]
820	then
821	answer=dummy
822	printf "\n"
823	while [[ "$answer" != c && "$answer" != k ]]
824	do
825	printf " >>> continue / list errors / kill palmbuild (c/l/k) ? "
826	read answer
827	if [[ "$answer" = l ]]
828	then
829	more ${configuration_identifier}_last_make_protocol
830	fi
831	done
832	if [[ $answer = k ]]
833	then
834	locat=user_abort; exit
835	fi
836	else
837	# ABORT ANYWAY
838	locat=user_abort; exit
839	fi
840	fi
841
842
843	# TAR NEW VERSION ON LOCAL HOST
844	if [[ $silent = false ]]
845	then
846	printf "\n *** tar update on local host ..."
847	fi
848	tar -cf ${program_name}_current_version.tar ${program_name} .$suf .o .mod .x
849
850	else
851
852	# NOW COMES THE BRANCH FOR CREATING THE EXECUTABLE FOR THE CURRENT RUN
853	# INCLUDING E.G. USER-INTERFACE ROUTINES. ALSO ADD OTHER UTILITY EXECUTABLES. EVERYTHING IS
854	# COLLECTED IN DIRECTORY SOURCES_FOR_RUN_...
855
856	# FIRST CHECK, IF COMPILED SOURCES FOR THIS RUN IDENTIFIER EXISTS
857	# AND ASK, IF THEY SHALL BE USED
858	if [[ -d ${fast_io_catalog}/${sources_for_run_catalog} && $use_existing_sources_folder = true ]]
859	then
860	printf "\a\n *** compiled sources for run \"$run_identifier\" found on local host in folder"
861	printf "\n ${fast_io_catalog}/${sources_for_run_catalog}"
862	printf "\n will be used!"
863	exit
864	fi
865
866	# SECOND CHECK, IF A DEPOSITORY EXISTS ON THE LOCAL MACHINE
867	if [[ ! -d ${make_depository} ]]
868	then
869	printf "\n +++ directory for local make depository:"
870	printf "\n $make_depository"
871	printf "\n not found. Please run \"palmbuild -c $configuration_identifier\" "
872	locat=make_depository; exit
873	fi
874
875
876	# COPY MAKE DEPOSITORY ON LOCAL MACHINE TO SOURCES_FOR_RUN_...
877	if [[ $silent = false ]]
878	then
879	printf "\n *** copy MAKE_DEPOSITORY_${configuration_identifier} on local host to "
880	printf "\n ${fast_io_catalog}/${sources_for_run_catalog} \n"
881	fi
882	rm -rf ${fast_io_catalog}/${sources_for_run_catalog}
883	mkdir -p ${fast_io_catalog}/${sources_for_run_catalog}
884	cp ${make_depository}/${program_name}_current_version.tar ${fast_io_catalog}/${sources_for_run_catalog}
885	cd $fast_io_catalog/${sources_for_run_catalog}
886	tar xf ${program_name}_current_version.tar
887
888
889	# COPY CONTENTS OF SOURCES_FOR_RUN_... TO SOURCES_FOR_RUN_...
890	# IN THE FAST_IO_CATALOG ON THE LOCAL MACHINE
891	if [[ $silent = false ]]
892	then
893	printf "\n *** copy ${base_directory}/${sources_for_run_catalog} to"
894	printf "\n ${fast_io_catalog}/${sources_for_run_catalog} on local host \n"
895	fi
896	cp ${base_directory}/${sources_for_run_catalog}/{,.[!.]} ${fast_io_catalog}/${sources_for_run_catalog}
897
898
899	# CREATE EXECUTABLE FROM THE NEW/MODIFIED SOURCE FILES, IF THERE ARE ANY
900	if [[ $(ls -1 ${base_directory}/${sources_for_run_catalog}/ \| grep -c .$suf) != 0 ]]
901	then
902
903	if [[ $silent = false ]]
904	then
905	echo " *** execute \"make\" on local host"
906	fi
907	[[ "$login_init_cmd" != "" ]] && $login_init_cmd
908	[[ "$module_commands" != "" ]] && $module_commands
909
910	make $make_options PROG=$program_name F90=$compiler_name COPT="$cpp_options" F90FLAGS="$compiler_options" LDFLAGS="$linker_options"
911
912	if [[ ${PIPESTATUS[0]} != 0 ]]
913	then
914
915	printf "\a\n +++ error(s) occurred during compiling or linking for host configuration \"$configuration_identifier\" "
916	if [[ $silent = false ]]
917	then
918	answer=dummy
919	printf "\n"
920	while [[ "$answer" != c && "$answer" != k ]]
921	do
922	printf " >>> continue / kill palmbuild (c/k) ? "
923	read answer
924	done
925	if [[ $answer = k ]]
926	then
927	rm -rf ${fast_io_catalog}/${sources_for_run_catalog}
928	locat=user_abort; exit
929	fi
930	else
931	# ABORT ANYWAY
932	rm -rf ${fast_io_catalog}/${sources_for_run_catalog}
933	locat=user_abort; exit
934	fi
935	fi
936
937	else
938
939	echo " *** nothing to compile for this run"
940
941	fi
942
943	fi
944	fi

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