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source: palm/trunk/SCRIPTS/palmbuild @ 4815

Last change on this file since 4815 was 4809, checked in by gronemeier, 4 years ago
Abort palmbuild if the execution of the module commands raise an error; update module command for HLRN Lise setup
Property svn:executable set to ``* Property svn:keywords set to `Id Rev`
File size: 36.2 KB

Line
1	#!/bin/bash
2
3	# palmbuild - script for compiling the PALM code and its utility programs
4
5	#------------------------------------------------------------------------------#
6	# This file is part of the PALM model system.
7	#
8	# PALM is free software: you can redistribute it and/or modify it under the terms
9	# of the GNU General Public License as published by the Free Software Foundation,
10	# either version 3 of the License, or (at your option) any later version.
11	#
12	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
13	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
14	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
15	#
16	# You should have received a copy of the GNU General Public License along with
17	# PALM. If not, see <http://www.gnu.org/licenses/>.
18	#
19	# Copyright 2017-2020 Leibniz Universitaet Hannover
20	#------------------------------------------------------------------------------#
21	#
22	# Current revisions:
23	# ------------------
24	#
25	#
26	# Former revisions:
27	# -----------------
28	# $Id: palmbuild 4809 2020-12-03 16:37:20Z gronemeier $
29	# Abort if the execution of the module commands raise an error
30	#
31	# 4556 2020-06-08 06:29:28Z raasch
32	# bugfix for determining the ssh-key givn in the configuration file
33	#
34	# 4481 2020-03-31 18:55:54Z maronga
35	# Abort if SOURCES_FOR_RUN catalog cannot be created
36	#
37	# 4082 2019-07-10 14:42:00Z raasch
38	# bugfix for executing module commands and for interpreting linker options
39	# on local machines
40	#
41	# 3756 2019-02-20 11:24:32Z suehring
42	# Disable compilation of postprocessing tool for surface output, until
43	# crashes with unexpected segmentation faults with intel compiler are solved.
44	#
45	# 3725 2019-02-07 10:11:02Z raasch
46	# ssh-calls for compilations on remote systems modified to avoid output
47	# of login messages on specific systems changed again (reverted as before r3549)
48	#
49	# 3549 2018-11-21 15:44:44Z raasch
50	# ssh-calls for compilations on remote systems modified to avoid output
51	# of login messages on specific systems
52	#
53	# 3534 2018-11-19 15:35:16Z raasch
54	# build of inifor added,
55	# ssh-calls rearranged to avoid output of system/user-profile messages
56	#
57	# 3523 2018-11-13 16:09:31Z suehring
58	# Enable compilation of post-processing tool for surface output - interface
59	# for posix conform sytemcalls is implemented.
60	#
61	# 3499 2018-11-07 10:55:15Z suehring
62	# Temporarily avoid compilation of post-processing tool for surface output
63	# until a workaround for compiler-specific intrinsic functions is found.
64	#
65	# 3494 2018-11-06 14:51:27Z suehring
66	# Add tool for surface-output post-processing
67	#
68	# 3455 2018-10-30 14:12:31Z raasch
69	# options -h and -d renamed -c and -r, respectively
70	#
71	# 3312 2018-10-06 14:15:46Z knoop
72	# "host identifier" in header output renamed "config. identifier",
73	# host_configuration renamed configuration_identifier,
74	# jobname renamed run_identifier
75	# header output of PALM code revision,
76	# options -m, -s, and -S removed
77	#
78	# 3210 2018-08-28 07:31:13Z sward
79	# Bugfix: agent_preprocessing stays in MAKE_DEPOSITORY after compilation
80	#
81	# 3208 2018-08-27 13:10:50Z sward
82	# Added building of agent_preprocessing
83	#
84	# 3033 2018-05-23 15:26:19Z raasch
85	# "fname" renamed to "jobname"
86	#
87	# 2718 2018-01-02 08:49:38Z maronga
88	# Corrected "Former revisions" section
89	#
90	# 2696 2017-12-14 17:12:51Z kanani
91	# Change in file header (GPL part)
92	#
93	# 2566 2017-10-20 08:50:47Z raasch
94	# informative messages switched of almost completely in silent mode
95	# two header blocks merged into one
96	#
97	# 2506 2017-09-29 08:30:37Z raasch
98	# option -V added to check for an existing SOURCES_FOR_RUN_... folder
99	# host configuration added to SOURCES_FOR_RUN_... folder name
100	# SOURCES_FOR_RUN_... folder is deleted in case of compilation errors
101	# host_identifier renamed host_configuration
102	#
103	# 2500 2017-09-25 11:10:03Z raasch
104	# bugfix for r2492
105	#
106	# 2492 2017-09-21 14:18:48Z raasch
107	# ask for compilation, if SOURCES_FOR_RUN_... exists
108	#
109	# 2487 2017-09-21 11:30:10Z raasch
110	# bugfix: abort in case of compiling/linking errors in silent mode
111	#
112	# 2422 2017-09-08 08:25:41Z raasch
113	# initial revision
114	#
115	#------------------------------------------------------------------------------#
116	# palmbuild - script for compiling the PALM code and its utility programs
117	#
118	# Procedure to compile code on local and remote hosts using the
119	# make-mechanism. The source code must be provided on the local host.
120	#
121	# @note This script does not work on MAC OS
122	#------------------------------------------------------------------------------#
123
124
125	# VARIABLE DECLARATIONS + DEFAULT VALUES
126	calltime=""
127	column1=""
128	column2=""
129	configuration_identifier=default
130	global_revision=""
131	locat=normal
132	makefile=""
133	make_options=""
134	module_commands=""
135	program_name=palm
136	remote_ip=""
137	silent=false
138	ssh_key=""
139	suf=f90
140	use_existing_sources_folder=false
141	version="palmbuild 1.0 Rev$Rev: 4809 $"
142	working_directory=`pwd`
143
144
145	# ERROR HANDLING IN CASE OF EXIT
146	trap 'rm -rf ${source_path}/${configuration_identifier}_last_make_protocol
147	if [[ $locat != normal && $locat != control_c ]]
148	then
149	printf "\n\n+++ palmbuild crashed \n\n"
150	exit 1
151	elif [[ $locat != normal ]]
152	then
153	printf "\n+++ palmbuild killed by \"^C\" \n\n"
154	exit 2
155	else
156	if [[ $silent = false ]]
157	then
158	printf "\n --> palmbuild finished\n\n"
159	fi
160	exit 0
161	fi' exit
162
163
164	# ACTIONS IN CASE OF TERMINAL-BREAK (CONTROL-C):
165	trap 'locat=control_c
166	exit 1
167	' 2
168
169
170
171	# READ SHELLSCRIPT-OPTIONS
172	while getopts :c:r:uvV option
173	do
174	case $option in
175	(c) configuration_identifier=$OPTARG;;
176	(r) run_identifier=$OPTARG;;
177	(v) silent=true;;
178	(V) use_existing_sources_folder=true;;
179	(\?) printf "\n +++ unknown option $OPTARG \n";
180	locat=parameter; exit;;
181	esac
182	done
183
184
185	# BUILD THE CONFIGURATION-FILE NAME AND THE SOURCES_FOR_RUN-FOLDER NAME
186	config_file=.palm.config.$configuration_identifier
187	sources_for_run_catalog=SOURCES_FOR_RUN_${configuration_identifier}_$run_identifier
188
189
190	# CHECK, IF CONFIGURATION-FILE EXISTS
191	if [[ ! -f $config_file ]]
192	then
193	printf "\n +++ configuration file: "
194	printf "\n $config_file"
195	printf "\n does not exist"
196	locat=configuration; exit
197	fi
198
199
200	# ### is this really required?
201	config_file=$PWD/$config_file
202
203
204	# READ VARIABLE SETTINGS FROM CONFIG FILE LINE BY LINE
205	while read line
206	do
207
208	# FIRST REPLACE ENVIRONMENT-VARIABLES BY THEIR RESPECTIVE VALUES
209	eval line=\"$line\"
210
211
212	# INTERPRET THE LINE
213	if [[ "$(echo $line)" = "" ]]
214	then
215
216	# EMPTY LINE, NO ACTION
217	continue
218
219	elif [[ "$(echo $line \| cut -c1)" = "#" ]]
220	then
221
222	# LINE IS A COMMENT LINE
223	continue
224
225	elif [[ "$(echo $line \| cut -c1)" = "%" ]]
226	then
227
228	# LINE DEFINES AN ENVIRONMENT-VARIABLE
229	var=`echo $line \| cut -d" " -s -f1 \| cut -c2-`
230	value=`echo $line \| cut -d" " -s -f2-`
231
232	# REPLACE ":" BY " " IN COMPILER- CPP- OR LINKER-OPTIONS,
233	# "::" IS REPLACED BY ":".
234	#value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
235
236
237	# VALUE FROM THE CONFIGURATION-FILE IS ASSIGNED TO THE
238	# ENVIRONMENT-VARIABLE, BUT ONLY IF NO VALUE HAS BEEN ALREADY
239	# ASSIGNED WITHIN THIS SCRIPT (E.G. BY SCRIPT-OPTIONS).
240	# NON-ASSIGNED VARIABLES HAVE VALUE "" OR 0 (IN CASE OF INTEGER).
241	# HENCE THE GENERAL RULE IS: SCRIPT-OPTION OVERWRITES THE
242	# CONFIGURATION-FILE.
243	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
244	then
245	eval export $var="\$value"
246
247	# TERMINAL OUTPUT OF ENVIRONMENT-VARIABLES, IF TRACEBACK IS SWITCHED on
248	if [[ $do_trace = true ]]
249	then
250	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
251	fi
252	fi
253
254	else
255
256	# SKIP ALL OTHER LINES
257	continue
258
259	fi
260
261	done < $config_file
262
263
264	# CHECK, IF THE BASE DIRECTORY PATH HAS BEEN GIVEN
265	if [[ "$base_directory" = "" ]]
266	then
267	printf "\n +++ no base directory found in configuration file"
268	locat=config_file; exit
269	else
270	if [[ ! -d $base_directory ]]
271	then
272	printf "\n\n +++ base directory \"$base_directory\" "
273	printf "\n does not exist"
274	locat=source_path; exit
275	fi
276	fi
277
278
279	# CHECK SOURCE-CODE PATH
280	if [[ "$source_path" = "" ]]
281	then
282	printf "\n +++ no source path found in configuration file"
283	locat=config_file; exit
284	else
285	if [[ ! -d $source_path ]]
286	then
287	printf "\n\n +++ source path \"$source_path\" "
288	printf "\n does not exist"
289	locat=source_path; exit
290	fi
291	fi
292
293
294	# CHECK MAKEFILE
295	makefile=$source_path/Makefile
296	if [[ ! -f $makefile ]]
297	then
298	printf "\n +++ makefile: "
299	printf "\n $makefile"
300	printf "\n does not exist"
301	locat=makefile; exit
302	fi
303
304
305	# CHECK COMPILERNAME
306	if [[ "$compiler_name" = "" ]]
307	then
308	printf "\n +++ no compiler name found in configuration file"
309	locat=config_file; exit
310	fi
311
312
313	# CHECK SERIAL COMPILERNAME
314	if [[ "$compiler_name_ser" = "" ]]
315	then
316	printf "\n +++ no compiler name for serial compilation in configuration file"
317	locat=config_file; exit
318	fi
319
320
321	# DETERMINE THE SSH-OPTION IN CASE THAT AN SSH-KEY IS EXPLICITLY GIVEN IN THE
322	# CONFIG-FILE
323	if [[ "$ssh_key" != "" ]]
324	then
325	ssh_key="-i $HOME/.ssh/$ssh_key"
326	fi
327
328
329	#CHECK CPP-OPTIONS
330	if [[ "$cpp_options" = "" ]]
331	then
332	printf "\n +++ WARNING: no cpp-options found in configuration file"
333	fi
334
335
336	# CHECK SETTINGS IN CASE OF COMPILING ON REMOTE MACHINE
337	if [[ "$remote_ip" != "" ]]
338	then
339
340	if [[ "$remote_username" = "" ]]
341	then
342	printf "\n +++ no user name given in configuration file"
343	locat=config_file; exit
344	fi
345
346	# GET SOURCE AND DEPOSITORY PATH ON THE REMOTE MACHINE WITHOUT EVALUATING
347	# THE $
348	# IF NOT GIVEN, USE THE LOCAL SOURCE AND DEPOSITORY PATH
349	line=`grep %remote_source_path $config_file`
350	if [[ "$line" != "" ]]
351	then
352	remote_source_path=`echo $line \| cut -d" " -s -f2`
353	else
354	line=`grep %source_path $config_file`
355	remote_source_path=`echo $line \| cut -d" " -s -f2`
356	fi
357
358	line=`grep %base_directory $config_file`
359	make_depository=`echo $line \| cut -d" " -s -f2`/MAKE_DEPOSITORY_${configuration_identifier}
360
361	else
362
363	make_depository=${base_directory}/MAKE_DEPOSITORY_${configuration_identifier}
364
365	fi
366
367
368	# GET THE GLOBAL REVISION-NUMBER OF THE SVN-REPOSITORY
369	global_revision=`svnversion $source_path 2>/dev/null`
370	global_revision="Rev: $global_revision"
371
372
373	# HEADER-OUTPUT (PART1: MESSAGES CONCERNING THE LOCAL HOST)
374	if [[ $silent = false ]]
375	then
376	calltime=$(date)
377	printf "\n"
378	printf "#------------------------------------------------------------------------# \n"
379	printf "\| %-40s%30s \| \n" "$version" "$calltime"
380	printf "\| %-40s%30s \| \n" "PALM code $global_revision" " "
381	printf "\| \| \n"
382	printf "\| %-13s%-57s \| \n" "called on:" "$(hostname) (IP:$local_ip)"
383	column2=$(echo $config_file \| cut -c1-57 )
384	printf "\| %-13s%-57s \| \n" "config file:" "$column2"
385	line=$(echo "$config_file" \| cut -c58-)
386	while [[ "$line" != "" ]]
387	do
388	column1=""
389	column2=$(echo $line \| cut -c1-57 )
390	printf "\| %-13s%-57s \| \n" "$column1" "$column2"
391	line=$(echo "$line" \| cut -c58-)
392	done
393	column2=$(echo $makefile \| cut -c1-57 )
394	printf "\| %-13s%-57s \| \n" "makefile:" "$column2"
395	line=$(echo "$makefile" \| cut -c58-)
396	while [[ "$line" != "" ]]
397	do
398	column1=""
399	column2=$(echo $line \| cut -c1-57 )
400	printf "\| %-13s%-57s \| \n" "$column1" "$column2"
401	line=$(echo "$line" \| cut -c58-)
402	done
403	column2=$(echo $source_path \| cut -c1-57 )
404	printf "\| %-13s%-57s \| \n" "source path:" "$column2"
405	line=$(echo "$source_path" \| cut -c58-)
406	while [[ "$line" != "" ]]
407	do
408	column1=""
409	column2=$(echo $line \| cut -c1-57 )
410	printf "\| %-13s%-57s \| \n" "$column1" "$column2"
411	line=$(echo "$line" \| cut -c58-)
412	done
413	printf "\| \| \n"
414
415	if [[ "$remote_ip" != "" ]]
416	then
417	column2="$configuration_identifier"
418	printf "\| %-20s%-50s \| \n" "config. identifier:" "$column2"
419	column2=$(echo "$make_depository" \| cut -c1-50 )
420	printf "\| %-20s%-50s \| \n" "remote depository:" "$column2"
421	else
422	column2="$configuration_identifier"
423	printf "\| %-20s%-50s \| \n" "config. identifier:" "$column2"
424	column2=$(echo "$make_depository" \| cut -c1-50 )
425	printf "\| %-20s%-50s \| \n" "local depository:" "$column2"
426	fi
427	line=$(echo "$make_depository" \| cut -c51-)
428	while [[ "$line" != "" ]]
429	do
430	column1=""
431	column2=$(echo "$line" \| cut -c1-50 )
432	printf "\| %-20s%-50s \| \n" "$column1" "$column2"
433	line=$(echo "$line" \| cut -c51-)
434	done
435
436	if [[ "$remote_ip" != "" ]]
437	then
438	printf "\| %-20s%-50s \| \n" "remote username:" "$remote_username"
439	printf "\| %-20s%-50s \| \n" "remote address:" "$remote_ip"
440	else
441	printf "\| %-20s%-50s \| \n" "username:" "$local_username"
442	printf "\| %-20s%-50s \| \n" "address:" "$local_ip"
443	fi
444
445	printf "\| %-20s%-50s \| \n" "compiler:" "$compiler_name"
446	printf "\| %-20s%-50s \| \n" "serial compiler:" "$compiler_name_ser"
447
448	if [[ "$make_options" != "" ]]
449	then
450	printf "\| %-20s%-50s \| \n" "make options:" "$make_options"
451	fi
452	column2=$(echo "$cpp_options" \| cut -c1-50 )
453	printf "\| %-20s%-50s \| \n" "cpp options:" "$column2"
454	line=$(echo "$cpp_options" \| cut -c51-)
455	while [[ "$line" != "" ]]
456	do
457	column1=""
458	column2=$(echo "$line" \| cut -c1-50 )
459	printf "\| %-20s%-50s \| \n" "$column1" "$column2"
460	line=$(echo "$line" \| cut -c51-)
461	done
462	column2=$(echo "$compiler_options" \| cut -c1-50 )
463	printf "\| %-20s%-50s \| \n" "compiler options:" "$column2"
464	line=$(echo "$compiler_options" \| cut -c51-)
465	while [[ "$line" != "" ]]
466	do
467	column1=""
468	column2=$(echo "$line" \| cut -c1-50 )
469	printf "\| %-20s%-50s \| \n" "$column1" "$column2"
470	line=$(echo "$line" \| cut -c51-)
471	done
472	column2=$(echo "$linker_options" \| cut -c1-50 )
473	printf "\| %-20s%-50s \| \n" "linker options:" "$column2"
474	line=$(echo "$linker_options" \| cut -c51-)
475	while [[ "$line" != "" ]]
476	do
477	column1=""
478	column2=$(echo "$line" \| cut -c1-50 )
479	printf "\| %-20s%-50s \| \n" "$column1" "$column2"
480	line=$(echo "$line" \| cut -c51-)
481	done
482	if [[ "$login_init_cmd" != "" ]]
483	then
484	column2=$(echo "$login_init_cmd" \| cut -c1-50 )
485	printf "\| %-20s%-50s \| \n" "login init command:" "$column2"
486	line=$(echo "$login_init_cmd" \| cut -c51-)
487	while [[ "$line" != "" ]]
488	do
489	column1=""
490	column2=$(echo "$line" \| cut -c1-50 )
491	printf "\| %-20s%-50s \| \n" "$column1" "$column2"
492	line=$(echo "$line" \| cut -c51-)
493	done
494	fi
495	if [[ "$module_commands" != "" ]]
496	then
497	column2=$(echo "$module_commands" \| cut -c1-50 )
498	printf "\| %-20s%-50s \| \n" "module command(s):" "$column2"
499	line=$(echo "$module_commands" \| cut -c51-)
500	while [[ "$line" != "" ]]
501	do
502	column1=""
503	column2=$(echo "$line" \| cut -c1-50 )
504	printf "\| %-20s%-50s \| \n" "$column1" "$column2"
505	line=$(echo "$line" \| cut -c51-)
506	done
507	fi
508	printf "#------------------------------------------------------------------------# \n"
509
510	answer=dummy
511	printf "\n"
512	while [[ "$answer" != y && "$answer" != Y && "$answer" != s && "$answer" != S && "$answer" != a && "$answer" != A ]]
513	do
514	printf " >>> continue (y(es)/a(bort)) ? "
515	read answer
516	done
517	if [[ $answer = a \|\| $answer = A ]]
518	then
519	locat=user_abort; exit
520	fi
521	fi
522
523
524	# TAR THE SOURCES AND MAKEFILES
525	# UTILITIES ARE TEMPORARILY COPIED TO THE SOURCE DIRECTORY IN ORDER TO TAR
526	# THEM TOO
527	if [[ $silent = false ]]
528	then
529	printf "\n\n *** tar of makefile and source files in"
530	printf "\n $source_path\n"
531	fi
532	cd $source_path
533	cp -p ../UTIL/combine_plot_fields.f90 .
534	cp -p ../UTIL/compare_palm_logs.f90 .
535	cp -p ../UTIL/agent_preprocessing/agent_preprocessing.f90 .
536	#cp -p ../UTIL/surface_output_processing/surface_output_to_vtk.f90 .
537	cp -p ../UTIL/inifor/src/inifor*f90 .
538	cp -p ../UTIL/Makefile_utilities .
539	tar -cf ${program_name}_sources.tar Makefile* *.$suf
540	rm combine_plot_fields.f90 compare_palm_logs.f90 agent_preprocessing.f90 Makefile_utilities inifor*f90 #surface_output_to_vtk.f90
541
542
543	# MAKE ON REMOTE HOST
544	if [[ "$remote_ip" != "" ]]
545	then
546
547	# NEXT IS THE BRANCH FOR CREATING THE MAKE_DEPOSITORY_...
548	if [[ "$run_identifier" = "" ]]
549	then
550
551	# COPY CURRENT SOURCE CODE TO SOURCE-CODE DIRECTORY ON THE REMOTE HOST
552	# CREATE THIS DIRECTORY, IF IT DOES NOT EXIST
553	if [[ $silent = false ]]
554	then
555	echo " "
556	echo " *** copying \"${program_name}_sources.tar\" to \"${remote_ip}:${make_depository}/\" "
557	ssh -q $ssh_key ${remote_username}@${remote_ip} "[[ ! -d ${make_depository} ]] && (echo \" *** ${make_depository} will be created\"; mkdir -p ${make_depository})" 2>&1
558	scp $ssh_key ${source_path}/${program_name}_sources.tar ${remote_username}@${remote_ip}:${make_depository}/${program_name}_sources.tar
559	else
560	ssh -q $ssh_key ${remote_username}@${remote_ip} "[[ ! -d ${make_depository} ]] && mkdir -p ${make_depository}" 2>&1
561	scp $ssh_key ${source_path}/${program_name}_sources.tar ${remote_username}@${remote_ip}:${make_depository}/${program_name}_sources.tar > /dev/null
562	fi
563
564
565
566
567	# UNTAR PREVIOUS UPDATE ON REMOTE HOST, IF EXISTING
568	if [[ $silent = false ]]
569	then
570	echo " *** untar previous update on remote host, if existing"
571	fi
572	ssh -q $ssh_key ${remote_username}@${remote_ip} "cd ${make_depository}; [[ -f ${program_name}_current_version.tar ]] && tar -xf ${program_name}_current_version.tar" 2>&1
573
574
575	# UNTAR CURRENT SOURCES ON REMOTE HOST
576	if [[ $silent = false ]]
577	then
578	echo " *** untar current sources on remote host"
579	fi
580	ssh -q $ssh_key ${remote_username}@${remote_ip} "cd ${make_depository}; tar -xf ${program_name}_sources.tar" 2>&1
581
582
583	# CREATE INIT AND MODULE COAMMNDS
584	[[ "$login_init_cmd" != "" ]] && login_init_cmd=${login_init_cmd}";"
585	[[ "$module_commands" != "" ]] && module_commands=${module_commands}";"
586
587
588	# FIRST CREATE EXECUTABLES FOR THE UTILITY ROUTINES
589	if [[ $silent = false ]]
590	then
591	echo " "
592	echo " *** creating utilities on remote host"
593	fi
594	make_call_string="make -f Makefile_utilities $make_options F90=$compiler_name F90_SER=$compiler_name_ser COPT=\"$cpp_options\" F90FLAGS=\"$compiler_options\" LDFLAGS=\"$linker_options\" "
595	### echo "$login_init_cmd $module_commands cd ${make_depository}; echo $make_call_string > LAST_MAKE_CALL; chmod u+x LAST_MAKE_CALL; $make_call_string; [[ \$? != 0 ]] && echo MAKE_ERROR" \| ssh -q $ssh_key ${remote_username}@${remote_ip} 2>/dev/null \| tee ${configuration_identifier}_last_make_protocol
596	ssh -q $ssh_key ${remote_username}@${remote_ip} "$login_init_cmd $module_commands cd ${make_depository}; echo $make_call_string > LAST_MAKE_CALL; chmod u+x LAST_MAKE_CALL; $make_call_string; [[ \$? != 0 ]] && echo MAKE_ERROR" 2>&1 \| tee ${configuration_identifier}_last_make_protocol
597
598	if [[ $(grep -c MAKE_ERROR ${configuration_identifier}_last_make_protocol) != 0 ]]
599	then
600	printf "\a\n +++ error(s) occurred during compiling or linking of utilities"
601	printf "\n for host configuration \"$configuration_identifier\" "
602	if [[ $silent = false ]]
603	then
604	answer=dummy
605	printf "\n"
606	while [[ "$answer" != c && "$answer" != k ]]
607	do
608	printf " >>> continue / list errors / kill palmbuild (c/l/k) ? "
609	read answer
610	if [[ "$answer" = l ]]
611	then
612	more ${configuration_identifier}_last_make_protocol
613	fi
614	done
615	if [[ $answer = k ]]
616	then
617	locat=user_abort; exit
618	fi
619	else
620	# ABORT ANYWAY
621	locat=user_abort; exit
622	fi
623	fi
624
625	# NOW COMPILE THE PALM CODE
626	# COMMANDS WILL BE COMMUNICATED TO SSH VIA PIPE, SINCE THIS WAY THE SYSTEM- AND
627	# USER-PROFILES OF THE SHELL ARE COMPLETELY EXECUTED (OTHERWISE, MAKE
628	# MAY E.G. MISS THE COMPILER-PATHS)
629	if [[ $silent = false ]]
630	then
631	echo " "
632	echo " *** compile PALM sources on remote host"
633	fi
634	make_call_string="make $make_options PROG=$program_name F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$compiler_options\" LDFLAGS=\"$linker_options\" "
635	### echo "$login_init_cmd $module_commands cd ${make_depository}; echo $make_call_string > LAST_MAKE_CALL; chmod u+x LAST_MAKE_CALL; $make_call_string; [[ \$? != 0 ]] && echo MAKE_ERROR" \| ssh -q $ssh_key ${remote_username}@${remote_ip} 2>&1 \| tee ${configuration_identifier}_last_make_protocol
636	ssh -q $ssh_key ${remote_username}@${remote_ip} "$login_init_cmd $module_commands cd ${make_depository}; echo $make_call_string > LAST_MAKE_CALL; chmod u+x LAST_MAKE_CALL; $make_call_string; [[ \$? != 0 ]] && echo MAKE_ERROR" 2>&1 \| tee ${configuration_identifier}_last_make_protocol
637
638	if [[ $(grep -c MAKE_ERROR ${configuration_identifier}_last_make_protocol) != 0 ]]
639	then
640	printf "\a\n +++ error(s) occurred during compiling or linking for host configuration \"$configuration_identifier\" "
641	if [[ $silent = false ]]
642	then
643	answer=dummy
644	printf "\n"
645	while [[ "$answer" != c && "$answer" != k ]]
646	do
647	printf " >>> continue / list errors / kill palmbuild (c/l/k) ? "
648	read answer
649	if [[ "$answer" = l ]]
650	then
651	more ${configuration_identifier}_last_make_protocol
652	fi
653	done
654	if [[ $answer = k ]]
655	then
656	locat=user_abort; exit
657	fi
658	else
659	# ABORT ANYWAY
660	locat=user_abort; exit
661	fi
662	fi
663
664	# TAR UPDATED VERSION ON THE REMOTE HOST
665	if [[ $silent = false ]]
666	then
667	printf "\n *** tar update on remote host ..."
668	fi
669	ssh -q $ssh_key ${remote_username}@${remote_ip} "cd ${make_depository}; chmod u+w ; tar -cf ${program_name}_current_version.tar ${program_name} .f90 .o .mod *.x" 2>&1
670
671
672	# NOW COMES THE BRANCH FOR CREATING THE EXECUTABLE FOR THE CURRENT RUN
673	# INCLUDING E.G. USER-INTERFACE ROUTINES. ALSO ADD OTHER UTILITY EXECUTABLES. EVERYTHING IS
674	# COLLECTED IN DIRECTORY SOURCES_FOR_RUN_...
675	elif [[ "$run_identifier" != "" ]]
676	then
677
678	# FIRST CHECK, IF COMPILED SOURCES FOR THIS RUN IDENTIFIER EXISTS
679	# AND ASK, IF THEY SHALL BE USED
680	ssh -q $ssh_key ${remote_username}@${remote_ip} "[[ -d ${fast_io_catalog}/${sources_for_run_catalog} ]] && echo sources for run found" 2>&1 > ${configuration_identifier}_last_make_protocol
681	if [[ $(grep -c "sources for run found" ${configuration_identifier}_last_make_protocol) != 0 && $use_existing_sources_folder = true ]]
682	then
683	printf "\a\n *** compiled sources for run \"$run_identifier\" found on remote host in folder"
684	printf "\n ${fast_io_catalog}/${sources_for_run_catalog}"
685	printf "\n will be used!"
686	exit
687	fi
688
689	# COPY MAKE DEPOSITORY ON REMOTE MACHINE TO SOURCES_FOR_RUN_...
690	if [[ $silent = false ]]
691	then
692	printf "\n *** copy MAKE_DEPOSITORY_${configuration_identifier} on remote host to $sources_for_run_catalog \n"
693	fi
694	ssh -q $ssh_key ${remote_username}@${remote_ip} "rm -rf ${fast_io_catalog}/${sources_for_run_catalog}; mkdir -p ${fast_io_catalog}/${sources_for_run_catalog}; [[ \$? != 0 ]] && exit 1; cp ${make_depository}/${program_name}_current_version.tar ${fast_io_catalog}/${sources_for_run_catalog}; cd ${fast_io_catalog}/${sources_for_run_catalog}; tar xf ${program_name}_current_version.tar" 2>&1
695	if [[ $? != 0 ]]
696	then
697	printf "\n +++ SOURCES_FOR_RUN catalog cannot be created."
698	printf "\n Check setting of variable fast_io_catalog in your config file."
699	locat=temporary_working_directory
700	exit
701	fi
702
703
704	# COPY CONTENTS OF SOURCES_FOR_RUN_... TO SOURCES_FOR_RUN_... ON THE REMOTE MACHINE
705	if [[ $silent = false ]]
706	then
707	printf "\n *** copy ${base_directory}/${sources_for_run_catalog}"
708	printf "\n to $sources_for_run_catalog on remote host \n"
709	fi
710	scp -q $ssh_key ${base_directory}/${sources_for_run_catalog}/{,.[!.]} ${remote_username}@${remote_ip}:${fast_io_catalog}/${sources_for_run_catalog}
711
712
713	# CREATE EXECUTABLE FROM THE NEW/MODIFIED SOURCE FILES, IF THERE ARE ANY
714	if [[ $(ls -1 ${base_directory}/${sources_for_run_catalog}/ \| grep -c .$suf) != 0 ]]
715	then
716
717	make_call_string="make $make_options PROG=$program_name F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$compiler_options\" LDFLAGS=\"$linker_options\" "
718	[[ "$login_init_cmd" != "" ]] && login_init_cmd=${login_init_cmd}";"
719	[[ "$module_commands" != "" ]] && module_commands=${module_commands}";"
720	if [[ $silent = false ]]
721	then
722	echo " *** execute \"make\" on remote host"
723	fi
724	ssh -q $ssh_key ${remote_username}@${remote_ip} "$login_init_cmd $module_commands cd ${fast_io_catalog}/${sources_for_run_catalog}; echo $make_call_string > LAST_MAKE_CALL; chmod u+x LAST_MAKE_CALL; $make_call_string; [[ \$? != 0 ]] && echo MAKE_ERROR" 2>&1 \| tee ${configuration_identifier}_last_make_protocol
725
726	if [[ $(grep -c MAKE_ERROR ${configuration_identifier}_last_make_protocol) != 0 ]]
727	then
728	printf "\a\n +++ error(s) occurred during compiling or linking for host configuration \"$configuration_identifier\" "
729	if [[ $silent = false ]]
730	then
731	answer=dummy
732	printf "\n"
733	while [[ "$answer" != c && "$answer" != k ]]
734	do
735	printf " >>> continue / list errors / kill palmbuild (c/l/k) ? "
736	read answer
737	if [[ "$answer" = l ]]
738	then
739	more ${configuration_identifier}_last_make_protocol
740	fi
741	done
742	if [[ $answer = k ]]
743	then
744	ssh -q $ssh_key ${remote_username}@${remote_ip} "rm -rf ${fast_io_catalog}/${sources_for_run_catalog}" 2>&1
745	locat=user_abort; exit
746	fi
747	else
748	# ABORT ANYWAY
749	ssh -q $ssh_key ${remote_username}@${remote_ip} "rm -rf ${fast_io_catalog}/${sources_for_run_catalog}" 2>&1
750	locat=user_abort; exit
751	fi
752	fi
753
754	else
755
756	echo " *** nothing to compile for this run"
757
758	fi
759
760	fi
761
762	rm -rf ${source_path}/${configuration_identifier}_last_make_protocol
763
764
765	# MAKE ON LOCAL HOST
766	else
767
768
769	# NEXT IS THE BRANCH FOR CREATING THE MAKE_DEPOSITORY_... ON THE
770	# LOCAL HOST
771	if [[ "$run_identifier" = "" ]]
772	then
773
774	# SET THE ENVIRONMENT (EXECUTE INIT AND MODULE COMMANDS)
775	if [[ "$login_init_cmd" != "" ]]
776	then
777	eval $login_init_cmd
778	fi
779
780	if [[ "$module_commands" != "" ]]
781	then
782	eval $module_commands \|\| {
783	printf "\n +++ Module command(s) failed."
784	printf "\n Check the above output of the command(s)."
785	locat=module_command_error; exit
786	}
787	fi
788
789	# next is required to evaluate environment variables or commands used in the linker option
790	eval linker_options=\"$linker_options\"
791
792	# CREATE MAKE-DEPOSITORY, IF IT DOES NOT EXIST
793	eval make_depository=$make_depository
794	if [[ ! -d $make_depository ]]
795	then
796	if mkdir -p $make_depository
797	then
798	if [[ $silent = false ]]
799	then
800	printf "\n\n *** directory for local make depository:"
801	printf "\n $make_depository"
802	printf "\n was created\n"
803	fi
804	else
805	printf "\n +++ directory for local make depository:"
806	printf "\n $make_depository"
807	printf "\n cannot be created"
808	locat=local_depository; exit
809	fi
810	fi
811
812	# COPY SOURCE-CODE FROM REPOSITORY TO MAKE-DEPOSITORY
813	if [[ $silent = false ]]
814	then
815	echo " "
816	echo " *** untar current source sources on local host in"
817	echo " $make_depository"
818	fi
819	cd $make_depository
820	cp $source_path/${program_name}_sources.tar .
821	tar xf ${program_name}_sources.tar
822
823
824	# FIRST CREATE EXECUTABLES FOR THE UTILITY ROUTINES
825	if [[ $silent = false ]]
826	then
827	echo " "
828	echo " *** creating utilities on local host"
829	fi
830	make -f Makefile_utilities $make_options F90=$compiler_name F90_SER=$compiler_name_ser COPT="$cpp_options" F90FLAGS="$compiler_options" LDFLAGS="$linker_options" \| tee ${configuration_identifier}_last_make_protocol
831
832	if [[ ${PIPESTATUS[0]} != 0 ]]
833	then
834	printf "\a\n +++ error(s) occurred during compiling of the utilities for host configuration \"$configuration_identifier\" "
835	if [[ $silent = false ]]
836	then
837	answer=dummy
838	printf "\n"
839	while [[ "$answer" != c && "$answer" != k ]]
840	do
841	printf " >>> continue / list errors / kill palmbuild (c/l/k) ? "
842	read answer
843	if [[ "$answer" = l ]]
844	then
845	more ${configuration_identifier}_last_make_protocol
846	fi
847	done
848	if [[ $answer = k ]]
849	then
850	locat=user_abort; exit
851	fi
852	else
853	# ABORT ANYWAY
854	locat=user_abort; exit
855	fi
856	else
857	cp agent_preprocessing $source_path/../SCRIPTS/.
858	cp inifor $source_path/../SCRIPTS/.
859	fi
860
861
862	# CALL MAKE ON LOCAL HOST USING THE OPTIONS DETERMINED FURTHER ABOVE
863	if [[ $silent = false ]]
864	then
865	echo " "
866	echo " *** compile PALM sources on local host"
867	fi
868
869	make $make_options PROG=$program_name F90=$compiler_name COPT="$cpp_options" F90FLAGS="$compiler_options" LDFLAGS="$linker_options" 2>&1 \| tee ${configuration_identifier}_last_make_protocol
870
871	if [[ ${PIPESTATUS[0]} != 0 ]]
872	then
873	printf "\a\n +++ error(s) occurred during compiling or linking for host configuration \"$configuration_identifier\" "
874	if [[ $silent = false ]]
875	then
876	answer=dummy
877	printf "\n"
878	while [[ "$answer" != c && "$answer" != k ]]
879	do
880	printf " >>> continue / list errors / kill palmbuild (c/l/k) ? "
881	read answer
882	if [[ "$answer" = l ]]
883	then
884	more ${configuration_identifier}_last_make_protocol
885	fi
886	done
887	if [[ $answer = k ]]
888	then
889	locat=user_abort; exit
890	fi
891	else
892	# ABORT ANYWAY
893	locat=user_abort; exit
894	fi
895	fi
896
897
898	# TAR NEW VERSION ON LOCAL HOST
899	if [[ $silent = false ]]
900	then
901	printf "\n *** tar update on local host ..."
902	fi
903	tar -cf ${program_name}_current_version.tar ${program_name} .$suf .o .mod .x
904
905	else
906
907	# NOW COMES THE BRANCH FOR CREATING THE EXECUTABLE FOR THE CURRENT RUN
908	# INCLUDING E.G. USER-INTERFACE ROUTINES. ALSO ADD OTHER UTILITY EXECUTABLES. EVERYTHING IS
909	# COLLECTED IN DIRECTORY SOURCES_FOR_RUN_...
910
911	# FIRST CHECK, IF COMPILED SOURCES FOR THIS RUN IDENTIFIER EXISTS
912	# AND ASK, IF THEY SHALL BE USED
913	if [[ -d ${fast_io_catalog}/${sources_for_run_catalog} && $use_existing_sources_folder = true ]]
914	then
915	printf "\a\n *** compiled sources for run \"$run_identifier\" found on local host in folder"
916	printf "\n ${fast_io_catalog}/${sources_for_run_catalog}"
917	printf "\n will be used!"
918	exit
919	fi
920
921	# SECOND CHECK, IF A DEPOSITORY EXISTS ON THE LOCAL MACHINE
922	if [[ ! -d ${make_depository} ]]
923	then
924	printf "\n +++ directory for local make depository:"
925	printf "\n $make_depository"
926	printf "\n not found. Please run \"palmbuild -c $configuration_identifier\" "
927	locat=make_depository; exit
928	fi
929
930
931	# COPY MAKE DEPOSITORY ON LOCAL MACHINE TO SOURCES_FOR_RUN_...
932	if [[ $silent = false ]]
933	then
934	printf "\n *** copy MAKE_DEPOSITORY_${configuration_identifier} on local host to "
935	printf "\n ${fast_io_catalog}/${sources_for_run_catalog} \n"
936	fi
937	rm -rf ${fast_io_catalog}/${sources_for_run_catalog}
938	mkdir -p ${fast_io_catalog}/${sources_for_run_catalog}
939	if [[ $? != 0 ]]
940	then
941	printf "\n +++ SOURCES_FOR_RUN catalog cannot be created."
942	printf "\n Check setting of variable fast_io_catalog in your config file."
943	locat=execution
944	exit
945	fi
946	cp ${make_depository}/${program_name}_current_version.tar ${fast_io_catalog}/${sources_for_run_catalog}
947	cd $fast_io_catalog/${sources_for_run_catalog}
948	tar xf ${program_name}_current_version.tar
949
950
951	# COPY CONTENTS OF SOURCES_FOR_RUN_... TO SOURCES_FOR_RUN_...
952	# IN THE FAST_IO_CATALOG ON THE LOCAL MACHINE
953	if [[ $silent = false ]]
954	then
955	printf "\n *** copy ${base_directory}/${sources_for_run_catalog} to"
956	printf "\n ${fast_io_catalog}/${sources_for_run_catalog} on local host \n"
957	fi
958	cp ${base_directory}/${sources_for_run_catalog}/{,.[!.]} ${fast_io_catalog}/${sources_for_run_catalog}
959
960
961	# CREATE EXECUTABLE FROM THE NEW/MODIFIED SOURCE FILES, IF THERE ARE ANY
962	if [[ $(ls -1 ${base_directory}/${sources_for_run_catalog}/ \| grep -c .$suf) != 0 ]]
963	then
964
965	if [[ $silent = false ]]
966	then
967	echo " *** execute \"make\" on local host"
968	fi
969	[[ "$login_init_cmd" != "" ]] && eval $login_init_cmd
970	[[ "$module_commands" != "" ]] && eval $module_commands \|\| {
971	printf "\n +++ Module command(s) failed."
972	printf "\n Check the above output of the command(s)."
973	locat=module_command_error; exit
974	}
975
976	# next is required to evaluate environment variables or commands used in the linker option
977	eval linker_options=\"$linker_options\"
978
979	make $make_options PROG=$program_name F90=$compiler_name COPT="$cpp_options" F90FLAGS="$compiler_options" LDFLAGS="$linker_options"
980
981	if [[ ${PIPESTATUS[0]} != 0 ]]
982	then
983
984	printf "\a\n +++ error(s) occurred during compiling or linking for host configuration \"$configuration_identifier\" "
985	if [[ $silent = false ]]
986	then
987	answer=dummy
988	printf "\n"
989	while [[ "$answer" != c && "$answer" != k ]]
990	do
991	printf " >>> continue / kill palmbuild (c/k) ? "
992	read answer
993	done
994	if [[ $answer = k ]]
995	then
996	rm -rf ${fast_io_catalog}/${sources_for_run_catalog}
997	locat=user_abort; exit
998	fi
999	else
1000	# ABORT ANYWAY
1001	rm -rf ${fast_io_catalog}/${sources_for_run_catalog}
1002	locat=user_abort; exit
1003	fi
1004	fi
1005
1006	else
1007
1008	echo " *** nothing to compile for this run"
1009
1010	fi
1011
1012	fi
1013	fi

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