source: palm/trunk/SCRIPTS/palmbuild @ 4753

Last change on this file since 4753 was 4556, checked in by raasch, 4 years ago

bugfix for determining the ssh-key givn in the configuration file

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File size: 35.8 KB
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1#!/bin/bash
2
3# palmbuild - script for compiling the PALM code and its utility programs
4
5#------------------------------------------------------------------------------#
6# This file is part of the PALM model system.
7#
8# PALM is free software: you can redistribute it and/or modify it under the terms
9# of the GNU General Public License as published by the Free Software Foundation,
10# either version 3 of the License, or (at your option) any later version.
11#
12# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
13# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
14# A PARTICULAR PURPOSE.  See the GNU General Public License for more details.
15#
16# You should have received a copy of the GNU General Public License along with
17# PALM. If not, see <http://www.gnu.org/licenses/>.
18#
19# Copyright 2017-2020  Leibniz Universitaet Hannover
20#------------------------------------------------------------------------------#
21#
22# Current revisions:
23# ------------------
24#
25#
26# Former revisions:
27# -----------------
28# $Id: palmbuild 4556 2020-06-08 06:29:28Z raasch $
29# bugfix for determining the ssh-key givn in the configuration file
30#
31# 4481 2020-03-31 18:55:54Z maronga
32# Abort if SOURCES_FOR_RUN catalog cannot be created
33#
34# 4082 2019-07-10 14:42:00Z raasch
35# bugfix for executing module commands and for interpreting linker options
36# on local machines
37#
38# 3756 2019-02-20 11:24:32Z suehring
39# Disable compilation of postprocessing tool for surface output, until 
40# crashes with unexpected segmentation faults with intel compiler are solved.
41#
42# 3725 2019-02-07 10:11:02Z raasch
43# ssh-calls for compilations on remote systems modified to avoid output
44# of login messages on specific systems changed again (reverted as before r3549)
45#
46# 3549 2018-11-21 15:44:44Z raasch
47# ssh-calls for compilations on remote systems modified to avoid output
48# of login messages on specific systems
49#
50# 3534 2018-11-19 15:35:16Z raasch
51# build of inifor added,
52# ssh-calls rearranged to avoid output of system/user-profile messages
53#
54# 3523 2018-11-13 16:09:31Z suehring
55# Enable compilation of post-processing tool for surface output - interface
56# for posix conform sytemcalls is implemented.
57#
58# 3499 2018-11-07 10:55:15Z suehring
59# Temporarily avoid compilation of post-processing tool for surface output
60# until a workaround for compiler-specific intrinsic functions is found.
61#
62# 3494 2018-11-06 14:51:27Z suehring
63# Add tool for surface-output post-processing
64#
65# 3455 2018-10-30 14:12:31Z raasch
66# options -h and -d renamed -c and -r, respectively
67#
68# 3312 2018-10-06 14:15:46Z knoop
69# "host identifier" in header output renamed "config. identifier",
70# host_configuration renamed configuration_identifier,
71# jobname renamed run_identifier
72# header output of PALM code revision,
73# options -m, -s, and -S removed
74#
75# 3210 2018-08-28 07:31:13Z sward
76# Bugfix: agent_preprocessing stays in MAKE_DEPOSITORY after compilation
77#
78# 3208 2018-08-27 13:10:50Z sward
79# Added building of agent_preprocessing
80#
81# 3033 2018-05-23 15:26:19Z raasch
82# "fname" renamed to "jobname"
83#
84# 2718 2018-01-02 08:49:38Z maronga
85# Corrected "Former revisions" section
86#
87# 2696 2017-12-14 17:12:51Z kanani
88# Change in file header (GPL part)
89#
90# 2566 2017-10-20 08:50:47Z raasch
91# informative messages switched of almost completely in silent mode
92# two header blocks merged into one
93#
94# 2506 2017-09-29 08:30:37Z raasch
95# option -V added to check for an existing SOURCES_FOR_RUN_... folder
96# host configuration added to SOURCES_FOR_RUN_... folder name
97# SOURCES_FOR_RUN_... folder is deleted in case of compilation errors
98# host_identifier renamed host_configuration
99#
100# 2500 2017-09-25 11:10:03Z raasch
101# bugfix for r2492
102#
103# 2492 2017-09-21 14:18:48Z raasch
104# ask for compilation, if SOURCES_FOR_RUN_... exists
105#
106# 2487 2017-09-21 11:30:10Z raasch
107# bugfix: abort in case of compiling/linking errors in silent mode
108#
109# 2422 2017-09-08 08:25:41Z raasch
110# initial revision
111#
112#------------------------------------------------------------------------------#
113# palmbuild - script for compiling the PALM code and its utility programs
114#
115# Procedure to compile code on local and remote hosts using the
116# make-mechanism. The source code must be provided on the local host.
117#
118# @note This script does not work on MAC OS
119#------------------------------------------------------------------------------#
120
121
122    # VARIABLE DECLARATIONS + DEFAULT VALUES
123 calltime=""
124 column1=""
125 column2=""
126 configuration_identifier=default
127 global_revision=""
128 locat=normal
129 makefile=""
130 make_options=""
131 module_commands=""
132 program_name=palm
133 remote_ip=""
134 silent=false
135 ssh_key=""
136 suf=f90
137 use_existing_sources_folder=false
138 version="palmbuild  1.0  Rev$Rev: 4556 $"
139 working_directory=`pwd`
140
141
142    # ERROR HANDLING IN CASE OF EXIT
143 trap 'rm -rf  ${source_path}/${configuration_identifier}_last_make_protocol
144       if [[ $locat != normal  &&  $locat != control_c ]]
145       then
146          printf "\n\n+++ palmbuild crashed \n\n"
147          exit 1
148       elif [[ $locat != normal ]]
149       then
150          printf "\n+++ palmbuild killed by \"^C\" \n\n"
151          exit 2
152       else
153          if [[ $silent = false ]]
154          then
155            printf "\n --> palmbuild finished\n\n"
156          fi
157          exit 0
158       fi' exit
159
160
161    # ACTIONS IN CASE OF TERMINAL-BREAK (CONTROL-C):
162 trap 'locat=control_c
163       exit 1
164      ' 2
165
166
167
168    # READ SHELLSCRIPT-OPTIONS
169 while  getopts  :c:r:uvV  option
170 do
171   case  $option  in
172       (c)   configuration_identifier=$OPTARG;;
173       (r)   run_identifier=$OPTARG;;
174       (v)   silent=true;;
175       (V)   use_existing_sources_folder=true;;
176       (\?)  printf "\n  +++ unknown option $OPTARG \n";
177             locat=parameter; exit;;
178   esac
179 done
180
181
182    # BUILD THE CONFIGURATION-FILE NAME AND THE SOURCES_FOR_RUN-FOLDER NAME
183 config_file=.palm.config.$configuration_identifier
184 sources_for_run_catalog=SOURCES_FOR_RUN_${configuration_identifier}_$run_identifier
185
186
187    # CHECK, IF CONFIGURATION-FILE EXISTS
188 if [[ ! -f $config_file ]]
189 then
190    printf "\n  +++ configuration file: "
191    printf "\n           $config_file"
192    printf "\n      does not exist"
193    locat=configuration; exit 
194 fi
195
196
197    # ### is this really required?
198 config_file=$PWD/$config_file
199
200
201    # READ VARIABLE SETTINGS FROM CONFIG FILE LINE BY LINE
202 while  read line
203 do
204
205       # FIRST REPLACE ENVIRONMENT-VARIABLES BY THEIR RESPECTIVE VALUES
206    eval  line=\"$line\"
207
208
209       # INTERPRET THE LINE
210    if [[ "$(echo $line)" = "" ]]
211    then
212
213          # EMPTY LINE, NO ACTION
214       continue
215
216    elif [[ "$(echo $line | cut -c1)"  =  "#" ]]
217    then
218
219          # LINE IS A COMMENT LINE
220       continue
221
222    elif [[ "$(echo $line | cut -c1)"  =  "%" ]]
223    then
224
225          # LINE DEFINES AN ENVIRONMENT-VARIABLE
226       var=`echo $line | cut -d" " -s -f1 | cut -c2-`
227       value=`echo $line | cut -d" " -s -f2-`
228
229          # REPLACE ":" BY " " IN COMPILER- CPP- OR LINKER-OPTIONS,
230          # "::" IS REPLACED BY ":".
231       #value=`echo $value | sed 's/::/%DUM%/g' | sed 's/:/ /g' | sed 's/%DUM%/:/g'`
232
233
234          # VALUE FROM THE CONFIGURATION-FILE IS ASSIGNED TO THE
235          # ENVIRONMENT-VARIABLE, BUT ONLY IF NO VALUE HAS BEEN ALREADY
236          # ASSIGNED WITHIN THIS SCRIPT (E.G. BY SCRIPT-OPTIONS).
237          # NON-ASSIGNED VARIABLES HAVE VALUE "" OR 0 (IN CASE OF INTEGER).
238          # HENCE THE GENERAL RULE IS: SCRIPT-OPTION OVERWRITES THE
239          # CONFIGURATION-FILE.
240       if [[ "$(eval echo \$$var)" = ""  ||  "$(eval echo \$$var)" = "0" ]]
241       then
242          eval  export  $var="\$value"
243
244             # TERMINAL OUTPUT OF ENVIRONMENT-VARIABLES, IF TRACEBACK IS SWITCHED on
245          if [[ $do_trace = true ]]
246          then
247             printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
248          fi
249       fi
250
251    else
252
253          # SKIP ALL OTHER LINES
254       continue
255
256    fi
257
258 done < $config_file
259
260 
261    # CHECK, IF THE BASE DIRECTORY PATH HAS BEEN GIVEN
262 if [[ "$base_directory" = "" ]]
263 then
264    printf "\n  +++ no base directory found in configuration file"
265    locat=config_file; exit
266 else
267    if [[ ! -d $base_directory ]]
268    then
269       printf "\n\n  +++ base directory \"$base_directory\" "
270       printf "\n      does not exist"
271       locat=source_path; exit
272    fi
273 fi
274
275
276    # CHECK SOURCE-CODE PATH
277 if [[ "$source_path" = "" ]]
278 then
279    printf "\n  +++ no source path found in configuration file"
280    locat=config_file; exit
281 else
282    if [[ ! -d $source_path ]]
283    then
284       printf "\n\n  +++ source path \"$source_path\" "
285       printf "\n      does not exist"
286       locat=source_path; exit
287    fi
288 fi
289
290
291    # CHECK MAKEFILE
292 makefile=$source_path/Makefile
293 if [[ ! -f $makefile ]]
294 then
295    printf "\n  +++ makefile: "
296    printf "\n           $makefile"
297    printf "\n      does not exist"
298    locat=makefile; exit 
299 fi
300
301
302    # CHECK COMPILERNAME
303 if [[ "$compiler_name" = "" ]]
304 then
305    printf "\n  +++ no compiler name found in configuration file"
306    locat=config_file; exit
307 fi
308
309
310    # CHECK SERIAL COMPILERNAME
311 if [[ "$compiler_name_ser" = "" ]]
312 then
313    printf "\n  +++ no compiler name for serial compilation in configuration file"
314    locat=config_file; exit
315 fi
316
317
318    # DETERMINE THE SSH-OPTION IN CASE THAT AN SSH-KEY IS EXPLICITLY GIVEN IN THE
319    # CONFIG-FILE
320 if [[ "$ssh_key" != "" ]]
321 then
322    ssh_key="-i $HOME/.ssh/$ssh_key"
323 fi
324
325
326    #CHECK CPP-OPTIONS
327 if [[ "$cpp_options" = "" ]]
328 then
329    printf "\n  +++ WARNING: no cpp-options found in configuration file"
330 fi
331
332
333    # CHECK SETTINGS IN CASE OF COMPILING ON REMOTE MACHINE
334 if [[ "$remote_ip" != "" ]]
335 then
336 
337    if [[ "$remote_username" = "" ]]
338    then
339       printf "\n  +++ no user name given in configuration file"
340       locat=config_file; exit
341    fi
342
343       # GET SOURCE AND DEPOSITORY PATH ON THE REMOTE MACHINE WITHOUT EVALUATING
344       # THE $
345       # IF NOT GIVEN, USE THE LOCAL SOURCE AND DEPOSITORY PATH
346    line=`grep %remote_source_path $config_file`
347    if [[ "$line" != "" ]]
348    then
349       remote_source_path=`echo $line | cut -d" " -s -f2`
350    else
351       line=`grep %source_path $config_file`
352       remote_source_path=`echo $line | cut -d" " -s -f2`
353    fi
354
355    line=`grep %base_directory $config_file`
356    make_depository=`echo $line | cut -d" " -s -f2`/MAKE_DEPOSITORY_${configuration_identifier}
357
358 else
359
360    make_depository=${base_directory}/MAKE_DEPOSITORY_${configuration_identifier}
361
362 fi
363
364
365    # GET THE GLOBAL REVISION-NUMBER OF THE SVN-REPOSITORY
366 global_revision=`svnversion $source_path  2>/dev/null`
367 global_revision="Rev: $global_revision"
368
369
370    # HEADER-OUTPUT (PART1: MESSAGES CONCERNING THE LOCAL HOST)
371 if [[ $silent = false ]]
372 then
373    calltime=$(date)
374    printf "\n"
375    printf "#------------------------------------------------------------------------# \n"
376    printf "| %-40s%30s | \n" "$version" "$calltime"
377    printf "| %-40s%30s | \n" "PALM code       $global_revision" " "
378    printf "|                                                                        | \n"
379    printf "| %-13s%-57s | \n" "called on:" "$(hostname) (IP:$local_ip)"
380    column2=$(echo $config_file | cut -c1-57 )
381    printf "| %-13s%-57s | \n" "config file:" "$column2"
382    line=$(echo "$config_file" | cut -c58-)
383    while [[ "$line" != "" ]]
384    do
385       column1=""
386       column2=$(echo $line | cut -c1-57 )
387       printf "| %-13s%-57s | \n" "$column1" "$column2"
388       line=$(echo "$line" | cut -c58-)
389    done
390    column2=$(echo $makefile | cut -c1-57 )
391    printf "| %-13s%-57s | \n" "makefile:" "$column2"
392    line=$(echo "$makefile" | cut -c58-)
393    while [[ "$line" != "" ]]
394    do
395       column1=""
396       column2=$(echo $line | cut -c1-57 )
397       printf "| %-13s%-57s | \n" "$column1" "$column2"
398       line=$(echo "$line" | cut -c58-)
399    done
400    column2=$(echo $source_path | cut -c1-57 )
401    printf "| %-13s%-57s | \n" "source path:" "$column2"
402    line=$(echo "$source_path" | cut -c58-)
403    while [[ "$line" != "" ]]
404    do
405       column1=""
406       column2=$(echo $line | cut -c1-57 )
407       printf "| %-13s%-57s | \n" "$column1" "$column2"
408       line=$(echo "$line" | cut -c58-)
409    done
410    printf "|                                                                        | \n"
411   
412    if [[ "$remote_ip" != "" ]]
413    then
414       column2="$configuration_identifier"
415       printf "| %-20s%-50s | \n" "config. identifier:" "$column2"
416       column2=$(echo "$make_depository" | cut -c1-50 )
417       printf "| %-20s%-50s | \n" "remote depository:" "$column2"
418    else
419       column2="$configuration_identifier"
420       printf "| %-20s%-50s | \n" "config. identifier:" "$column2"
421       column2=$(echo "$make_depository" | cut -c1-50 )
422       printf "| %-20s%-50s | \n" "local depository:" "$column2"
423    fi
424    line=$(echo "$make_depository" | cut -c51-)
425    while [[ "$line" != "" ]]
426    do
427       column1=""
428       column2=$(echo "$line" | cut -c1-50 )
429       printf "| %-20s%-50s | \n" "$column1" "$column2"
430       line=$(echo "$line" | cut -c51-)
431    done
432   
433    if [[ "$remote_ip" != "" ]]
434    then
435       printf "| %-20s%-50s | \n" "remote username:" "$remote_username"
436       printf "| %-20s%-50s | \n" "remote address:" "$remote_ip"
437    else
438       printf "| %-20s%-50s | \n" "username:" "$local_username"
439       printf "| %-20s%-50s | \n" "address:" "$local_ip"
440    fi
441   
442    printf "| %-20s%-50s | \n" "compiler:" "$compiler_name"
443    printf "| %-20s%-50s | \n" "serial compiler:" "$compiler_name_ser"
444   
445    if [[ "$make_options" != "" ]]
446    then
447       printf "| %-20s%-50s | \n" "make options:" "$make_options"
448    fi
449    column2=$(echo "$cpp_options" | cut -c1-50 )
450    printf "| %-20s%-50s | \n" "cpp options:" "$column2"
451    line=$(echo "$cpp_options" | cut -c51-)
452    while [[ "$line" != "" ]]
453    do
454       column1=""
455       column2=$(echo "$line" | cut -c1-50 )
456       printf "| %-20s%-50s | \n" "$column1" "$column2"
457       line=$(echo "$line" | cut -c51-)
458    done
459    column2=$(echo "$compiler_options" | cut -c1-50 )
460    printf "| %-20s%-50s | \n" "compiler options:" "$column2"
461    line=$(echo "$compiler_options" | cut -c51-)
462    while [[ "$line" != "" ]]
463    do
464       column1=""
465       column2=$(echo "$line" | cut -c1-50 )
466       printf "| %-20s%-50s | \n" "$column1" "$column2"
467       line=$(echo "$line" | cut -c51-)
468    done
469    column2=$(echo "$linker_options" | cut -c1-50 )
470    printf "| %-20s%-50s | \n" "linker options:" "$column2"
471    line=$(echo "$linker_options" | cut -c51-)
472    while [[ "$line" != "" ]]
473    do
474       column1=""
475       column2=$(echo "$line" | cut -c1-50 )
476       printf "| %-20s%-50s | \n" "$column1" "$column2"
477       line=$(echo "$line" | cut -c51-)
478    done
479    if [[ "$login_init_cmd" != "" ]]
480    then
481       column2=$(echo "$login_init_cmd" | cut -c1-50 )
482       printf "| %-20s%-50s | \n" "login init command:" "$column2"
483       line=$(echo "$login_init_cmd" | cut -c51-)
484       while [[ "$line" != "" ]]
485       do
486          column1=""
487          column2=$(echo "$line" | cut -c1-50 )
488          printf "| %-20s%-50s | \n" "$column1" "$column2"
489          line=$(echo "$line" | cut -c51-)
490       done
491    fi
492    if [[ "$module_commands" != "" ]]
493    then
494       column2=$(echo "$module_commands" | cut -c1-50 )
495       printf "| %-20s%-50s | \n" "module command(s):" "$column2"
496       line=$(echo "$module_commands" | cut -c51-)
497       while [[ "$line" != "" ]]
498       do
499          column1=""
500          column2=$(echo "$line" | cut -c1-50 )
501          printf "| %-20s%-50s | \n" "$column1" "$column2"
502          line=$(echo "$line" | cut -c51-)
503       done
504    fi
505    printf "#------------------------------------------------------------------------# \n"
506
507    answer=dummy
508    printf "\n"
509    while [[ "$answer" != y  &&  "$answer" != Y  && "$answer" != s  &&  "$answer" != S  &&  "$answer" != a  &&  "$answer" != A ]]
510    do
511       printf " >>> continue (y(es)/a(bort)) ?  "
512       read  answer
513    done
514    if [[ $answer = a  ||  $answer = A ]]
515    then
516       locat=user_abort; exit
517    fi
518 fi
519
520
521    # TAR THE SOURCES AND MAKEFILES
522    # UTILITIES ARE TEMPORARILY COPIED TO THE SOURCE DIRECTORY IN ORDER TO TAR
523    # THEM TOO
524 if [[ $silent = false ]]
525 then
526    printf "\n\n  *** tar of makefile and source files in"
527    printf "\n      $source_path\n"
528 fi
529 cd  $source_path
530 cp -p  ../UTIL/combine_plot_fields.f90  .
531 cp -p  ../UTIL/compare_palm_logs.f90  .
532 cp -p  ../UTIL/agent_preprocessing/agent_preprocessing.f90  .
533 #cp -p  ../UTIL/surface_output_processing/surface_output_to_vtk.f90  .
534 cp -p  ../UTIL/inifor/src/inifor*f90  .
535 cp -p  ../UTIL/Makefile_utilities  .
536 tar -cf  ${program_name}_sources.tar  Makefile*  *.$suf
537 rm  combine_plot_fields.f90  compare_palm_logs.f90 agent_preprocessing.f90 Makefile_utilities inifor*f90 #surface_output_to_vtk.f90
538
539
540    # MAKE ON REMOTE HOST
541 if [[ "$remote_ip" != "" ]]
542 then
543
544       # NEXT IS THE BRANCH FOR CREATING THE MAKE_DEPOSITORY_...
545    if [[ "$run_identifier" = "" ]]
546    then
547
548          # COPY CURRENT SOURCE CODE TO SOURCE-CODE DIRECTORY ON THE REMOTE HOST
549          # CREATE THIS DIRECTORY, IF IT DOES NOT EXIST
550       if [[ $silent = false ]]
551       then
552          echo " "
553          echo "  *** copying \"${program_name}_sources.tar\" to \"${remote_ip}:${make_depository}/\" "
554          ssh  -q  $ssh_key ${remote_username}@${remote_ip}  "[[ ! -d ${make_depository} ]]  &&  (echo \"  *** ${make_depository} will be created\"; mkdir -p  ${make_depository})"  2>&1
555          scp  $ssh_key ${source_path}/${program_name}_sources.tar  ${remote_username}@${remote_ip}:${make_depository}/${program_name}_sources.tar
556       else
557          ssh  -q  $ssh_key ${remote_username}@${remote_ip}  "[[ ! -d ${make_depository} ]]  &&  mkdir -p  ${make_depository}"  2>&1
558          scp  $ssh_key ${source_path}/${program_name}_sources.tar  ${remote_username}@${remote_ip}:${make_depository}/${program_name}_sources.tar  >  /dev/null
559       fi
560
561
562
563
564          # UNTAR PREVIOUS UPDATE ON REMOTE HOST, IF EXISTING
565       if [[ $silent = false ]]
566       then
567          echo "  *** untar previous update on remote host, if existing"
568       fi
569       ssh  -q  $ssh_key  ${remote_username}@${remote_ip}  "cd ${make_depository}; [[ -f ${program_name}_current_version.tar ]]  &&  tar -xf  ${program_name}_current_version.tar"  2>&1
570
571
572          # UNTAR CURRENT SOURCES ON REMOTE HOST
573       if [[ $silent = false ]]
574       then
575          echo "  *** untar current sources on remote host"
576       fi
577       ssh  -q  $ssh_key  ${remote_username}@${remote_ip}  "cd ${make_depository}; tar -xf  ${program_name}_sources.tar"  2>&1
578
579
580          # CREATE INIT AND MODULE COAMMNDS
581       [[ "$login_init_cmd" != "" ]]   &&  login_init_cmd=${login_init_cmd}";"
582       [[ "$module_commands" != "" ]]  &&  module_commands=${module_commands}";"
583
584
585          # FIRST CREATE EXECUTABLES FOR THE UTILITY ROUTINES
586       if [[ $silent = false ]]
587       then
588          echo " "
589          echo "  *** creating utilities on remote host"
590       fi
591       make_call_string="make  -f Makefile_utilities  $make_options  F90=$compiler_name  F90_SER=$compiler_name_ser  COPT=\"$cpp_options\"  F90FLAGS=\"$compiler_options\"  LDFLAGS=\"$linker_options\" "
592###       echo "$login_init_cmd $module_commands cd ${make_depository}; echo $make_call_string > LAST_MAKE_CALL; chmod u+x LAST_MAKE_CALL; $make_call_string; [[ \$? != 0 ]] && echo MAKE_ERROR" | ssh  -q  $ssh_key  ${remote_username}@${remote_ip} 2>/dev/null | tee ${configuration_identifier}_last_make_protocol
593       ssh  -q  $ssh_key  ${remote_username}@${remote_ip}  "$login_init_cmd $module_commands cd ${make_depository}; echo $make_call_string > LAST_MAKE_CALL; chmod u+x LAST_MAKE_CALL; $make_call_string; [[ \$? != 0 ]] && echo MAKE_ERROR"  2>&1 | tee ${configuration_identifier}_last_make_protocol
594
595       if [[ $(grep -c MAKE_ERROR ${configuration_identifier}_last_make_protocol) != 0 ]]
596       then
597          printf "\a\n  +++ error(s) occurred during compiling or linking of utilities"
598          printf "\n      for host configuration \"$configuration_identifier\" "
599          if [[ $silent = false ]]
600          then
601             answer=dummy
602             printf "\n"
603             while [[ "$answer" != c  &&  "$answer" != k ]]
604             do
605                printf "  >>> continue / list errors / kill palmbuild (c/l/k) ? "
606                read  answer
607                if [[ "$answer" = l ]]
608                then
609                   more ${configuration_identifier}_last_make_protocol
610                fi
611             done
612             if [[ $answer = k ]]
613             then
614                locat=user_abort; exit
615             fi
616          else
617                # ABORT ANYWAY
618             locat=user_abort; exit
619          fi
620       fi
621
622          # NOW COMPILE THE PALM CODE
623          # COMMANDS WILL BE COMMUNICATED TO SSH VIA PIPE, SINCE THIS WAY THE SYSTEM- AND
624          # USER-PROFILES OF THE SHELL ARE COMPLETELY EXECUTED (OTHERWISE, MAKE
625          # MAY E.G. MISS THE COMPILER-PATHS)
626       if [[ $silent = false ]]
627       then
628          echo " "
629          echo "  *** compile PALM sources on remote host"
630       fi
631       make_call_string="make  $make_options  PROG=$program_name  F90=$compiler_name  COPT=\"$cpp_options\"  F90FLAGS=\"$compiler_options\"  LDFLAGS=\"$linker_options\" "
632###       echo "$login_init_cmd $module_commands cd ${make_depository}; echo $make_call_string > LAST_MAKE_CALL; chmod u+x LAST_MAKE_CALL; $make_call_string; [[ \$? != 0 ]] && echo MAKE_ERROR" | ssh  -q  $ssh_key  ${remote_username}@${remote_ip} 2>&1 | tee ${configuration_identifier}_last_make_protocol
633       ssh  -q  $ssh_key  ${remote_username}@${remote_ip}  "$login_init_cmd $module_commands cd ${make_depository}; echo $make_call_string > LAST_MAKE_CALL; chmod u+x LAST_MAKE_CALL; $make_call_string; [[ \$? != 0 ]] && echo MAKE_ERROR"  2>&1 | tee ${configuration_identifier}_last_make_protocol
634
635       if [[ $(grep -c MAKE_ERROR ${configuration_identifier}_last_make_protocol) != 0 ]]
636       then
637          printf "\a\n  +++ error(s) occurred during compiling or linking for host configuration \"$configuration_identifier\" "
638          if [[ $silent = false ]]
639          then
640             answer=dummy
641             printf "\n"
642             while [[ "$answer" != c  &&  "$answer" != k ]]
643             do
644                printf "  >>> continue / list errors / kill palmbuild (c/l/k) ? "
645                read  answer
646                if [[ "$answer" = l ]]
647                then
648                   more ${configuration_identifier}_last_make_protocol
649                fi
650             done
651             if [[ $answer = k ]]
652             then
653                locat=user_abort; exit
654             fi
655          else
656                # ABORT ANYWAY
657             locat=user_abort; exit
658          fi
659       fi
660
661          # TAR UPDATED VERSION ON THE REMOTE HOST
662       if [[ $silent = false ]]
663       then
664          printf "\n  *** tar update on remote host ..."
665       fi
666       ssh  -q  $ssh_key  ${remote_username}@${remote_ip}  "cd ${make_depository}; chmod u+w *; tar -cf  ${program_name}_current_version.tar  ${program_name}  *.f90 *.o *.mod *.x"  2>&1
667
668
669       # NOW COMES THE BRANCH FOR CREATING THE EXECUTABLE FOR THE CURRENT RUN
670       # INCLUDING E.G. USER-INTERFACE ROUTINES. ALSO ADD OTHER UTILITY EXECUTABLES. EVERYTHING IS
671       # COLLECTED IN DIRECTORY SOURCES_FOR_RUN_...
672    elif [[ "$run_identifier" != "" ]]
673    then
674
675          # FIRST CHECK, IF COMPILED SOURCES FOR THIS RUN IDENTIFIER EXISTS
676          # AND ASK, IF THEY SHALL BE USED
677       ssh  -q  $ssh_key  ${remote_username}@${remote_ip}  "[[ -d ${fast_io_catalog}/${sources_for_run_catalog} ]]  &&  echo sources for run found"  2>&1  >  ${configuration_identifier}_last_make_protocol
678       if [[ $(grep -c "sources for run found" ${configuration_identifier}_last_make_protocol) != 0  &&  $use_existing_sources_folder = true ]]
679       then
680          printf "\a\n  *** compiled sources for run \"$run_identifier\" found on remote host in folder"
681          printf "\n      ${fast_io_catalog}/${sources_for_run_catalog}"
682          printf "\n      will be used!"
683          exit
684       fi
685
686          # COPY MAKE DEPOSITORY ON REMOTE MACHINE TO SOURCES_FOR_RUN_...
687       if [[ $silent = false ]]
688       then
689          printf "\n  *** copy MAKE_DEPOSITORY_${configuration_identifier} on remote host to $sources_for_run_catalog \n"
690       fi
691       ssh  -q  $ssh_key  ${remote_username}@${remote_ip}  "rm -rf ${fast_io_catalog}/${sources_for_run_catalog}; mkdir -p ${fast_io_catalog}/${sources_for_run_catalog}; [[ \$? != 0 ]] && exit 1; cp ${make_depository}/${program_name}_current_version.tar  ${fast_io_catalog}/${sources_for_run_catalog}; cd ${fast_io_catalog}/${sources_for_run_catalog}; tar xf ${program_name}_current_version.tar"  2>&1
692       if [[ $? != 0 ]]
693       then
694          printf "\n  +++ SOURCES_FOR_RUN catalog cannot be created."
695          printf "\n      Check setting of variable fast_io_catalog in your config file."
696          locat=temporary_working_directory
697          exit
698       fi
699
700
701          # COPY CONTENTS OF SOURCES_FOR_RUN_... TO SOURCES_FOR_RUN_... ON THE REMOTE MACHINE
702       if [[ $silent = false ]]
703       then
704          printf "\n  *** copy ${base_directory}/${sources_for_run_catalog}"
705          printf "\n      to $sources_for_run_catalog on remote host \n"
706       fi
707       scp  -q  $ssh_key  ${base_directory}/${sources_for_run_catalog}/{*,.[!.]*}  ${remote_username}@${remote_ip}:${fast_io_catalog}/${sources_for_run_catalog}
708
709
710          # CREATE EXECUTABLE FROM THE NEW/MODIFIED SOURCE FILES, IF THERE ARE ANY
711       if [[ $(ls -1 ${base_directory}/${sources_for_run_catalog}/ | grep -c .$suf) != 0 ]]
712       then
713
714          make_call_string="make  $make_options  PROG=$program_name  F90=$compiler_name  COPT=\"$cpp_options\"  F90FLAGS=\"$compiler_options\"  LDFLAGS=\"$linker_options\" "
715          [[ "$login_init_cmd" != "" ]]   &&  login_init_cmd=${login_init_cmd}";"
716          [[ "$module_commands" != "" ]]  &&  module_commands=${module_commands}";"
717          if [[ $silent = false ]]
718          then
719             echo "  *** execute \"make\" on remote host"
720          fi
721          ssh  -q  $ssh_key  ${remote_username}@${remote_ip}  "$login_init_cmd $module_commands cd ${fast_io_catalog}/${sources_for_run_catalog}; echo $make_call_string > LAST_MAKE_CALL; chmod u+x LAST_MAKE_CALL; $make_call_string; [[ \$? != 0 ]] && echo MAKE_ERROR"  2>&1 | tee ${configuration_identifier}_last_make_protocol
722
723          if [[ $(grep -c MAKE_ERROR ${configuration_identifier}_last_make_protocol) != 0 ]]
724          then
725             printf "\a\n  +++ error(s) occurred during compiling or linking for host configuration \"$configuration_identifier\" "
726             if [[ $silent = false ]]
727             then
728                answer=dummy
729                printf "\n"
730                while [[ "$answer" != c  &&  "$answer" != k ]]
731                do
732                   printf "  >>> continue / list errors / kill palmbuild (c/l/k) ? "
733                   read  answer
734                   if [[ "$answer" = l ]]
735                   then
736                      more ${configuration_identifier}_last_make_protocol
737                   fi
738                done
739                if [[ $answer = k ]]
740                then
741                   ssh  -q  $ssh_key  ${remote_username}@${remote_ip}  "rm -rf ${fast_io_catalog}/${sources_for_run_catalog}"  2>&1
742                   locat=user_abort; exit
743                fi
744             else
745                   # ABORT ANYWAY
746                ssh  -q  $ssh_key  ${remote_username}@${remote_ip}  "rm -rf ${fast_io_catalog}/${sources_for_run_catalog}"  2>&1
747                locat=user_abort; exit
748             fi
749          fi
750
751       else
752
753          echo "  *** nothing to compile for this run"
754
755       fi
756
757    fi
758
759    rm -rf  ${source_path}/${configuration_identifier}_last_make_protocol
760
761
762    # MAKE ON LOCAL HOST
763 else
764
765
766       # NEXT IS THE BRANCH FOR CREATING THE MAKE_DEPOSITORY_... ON THE
767       # LOCAL HOST
768    if [[ "$run_identifier" = "" ]]
769    then
770
771          # SET THE ENVIRONMENT (EXECUTE INIT AND MODULE COMMANDS)
772       if [[ "$login_init_cmd" != "" ]]
773       then
774          eval $login_init_cmd
775       fi
776
777       if [[ "$module_commands" != "" ]]
778       then
779          eval $module_commands
780       fi
781
782          # next is required to evaluate environment variables or commands used in the linker option
783       eval linker_options=\"$linker_options\"
784
785          # CREATE MAKE-DEPOSITORY, IF IT DOES NOT EXIST
786       eval make_depository=$make_depository
787       if [[ ! -d $make_depository ]]
788       then
789          if  mkdir -p $make_depository
790          then
791             if [[ $silent = false ]]
792             then
793                printf "\n\n  *** directory for local make depository:"
794                printf "\n           $make_depository"
795                printf "\n      was created\n"
796             fi
797          else
798             printf "\n  +++ directory for local make depository:"
799             printf "\n           $make_depository"
800             printf "\n      cannot be created"
801             locat=local_depository; exit
802          fi
803       fi
804
805          # COPY SOURCE-CODE FROM REPOSITORY TO MAKE-DEPOSITORY
806       if [[ $silent = false ]]
807       then
808          echo " "
809          echo "  *** untar current source sources on local host in"
810          echo "      $make_depository"
811       fi
812       cd  $make_depository
813       cp  $source_path/${program_name}_sources.tar  .
814       tar xf  ${program_name}_sources.tar
815
816
817          # FIRST CREATE EXECUTABLES FOR THE UTILITY ROUTINES
818       if [[ $silent = false ]]
819       then
820          echo " "
821          echo "  *** creating utilities on local host"
822       fi
823       make  -f Makefile_utilities  $make_options  F90=$compiler_name  F90_SER=$compiler_name_ser  COPT="$cpp_options"  F90FLAGS="$compiler_options"  LDFLAGS="$linker_options" | tee ${configuration_identifier}_last_make_protocol
824
825       if [[ ${PIPESTATUS[0]} != 0 ]]
826       then
827          printf "\a\n  +++ error(s) occurred during compiling of the utilities for host configuration \"$configuration_identifier\" "
828          if [[ $silent = false ]]
829          then
830             answer=dummy
831             printf "\n"
832             while [[ "$answer" != c  &&  "$answer" != k ]]
833             do
834                printf "  >>> continue / list errors / kill palmbuild (c/l/k) ? "
835                read  answer
836                if [[ "$answer" = l ]]
837                then
838                   more ${configuration_identifier}_last_make_protocol
839                fi
840             done
841             if [[ $answer = k ]]
842             then
843                locat=user_abort; exit
844             fi
845          else
846             # ABORT ANYWAY
847             locat=user_abort; exit
848          fi
849       else
850          cp agent_preprocessing $source_path/../SCRIPTS/.
851          cp inifor $source_path/../SCRIPTS/.
852       fi
853
854
855          # CALL MAKE ON LOCAL HOST USING THE  OPTIONS DETERMINED FURTHER ABOVE
856       if [[ $silent = false ]]
857       then
858          echo " "
859          echo "  *** compile PALM sources on local host"
860       fi
861
862       make  $make_options  PROG=$program_name  F90=$compiler_name  COPT="$cpp_options"  F90FLAGS="$compiler_options"  LDFLAGS="$linker_options"  2>&1 | tee ${configuration_identifier}_last_make_protocol
863
864       if [[ ${PIPESTATUS[0]} != 0 ]]
865       then
866          printf "\a\n  +++ error(s) occurred during compiling or linking for host configuration \"$configuration_identifier\" "
867          if [[ $silent = false ]]
868          then
869             answer=dummy
870             printf "\n"
871             while [[ "$answer" != c  &&  "$answer" != k ]]
872             do
873                printf "  >>> continue / list errors / kill palmbuild (c/l/k) ? "
874                read  answer
875                if [[ "$answer" = l ]]
876                then
877                   more ${configuration_identifier}_last_make_protocol
878                fi
879             done
880             if [[ $answer = k ]]
881             then
882                locat=user_abort; exit
883             fi
884          else
885                # ABORT ANYWAY
886             locat=user_abort; exit
887          fi
888       fi
889
890
891          # TAR NEW VERSION ON LOCAL HOST
892       if [[ $silent = false ]]
893       then
894          printf "\n  *** tar update on local host ..."
895       fi
896       tar -cf  ${program_name}_current_version.tar  ${program_name} *.$suf *.o *.mod *.x
897
898    else
899
900          # NOW COMES THE BRANCH FOR CREATING THE EXECUTABLE FOR THE CURRENT RUN
901          # INCLUDING E.G. USER-INTERFACE ROUTINES. ALSO ADD OTHER UTILITY EXECUTABLES. EVERYTHING IS
902          # COLLECTED IN DIRECTORY SOURCES_FOR_RUN_...
903
904          # FIRST CHECK, IF COMPILED SOURCES FOR THIS RUN IDENTIFIER EXISTS
905          # AND ASK, IF THEY SHALL BE USED
906       if [[ -d ${fast_io_catalog}/${sources_for_run_catalog}  &&  $use_existing_sources_folder = true ]]
907       then
908          printf "\a\n  *** compiled sources for run \"$run_identifier\" found on local host in folder"
909          printf "\n      ${fast_io_catalog}/${sources_for_run_catalog}"
910          printf "\n      will be used!"
911          exit
912       fi
913
914          # SECOND CHECK, IF A DEPOSITORY EXISTS ON THE LOCAL MACHINE
915       if [[ ! -d ${make_depository} ]]
916       then
917          printf "\n  +++ directory for local make depository:"
918          printf "\n           $make_depository"
919          printf "\n      not found. Please run \"palmbuild -c $configuration_identifier\" "
920          locat=make_depository; exit
921       fi
922
923
924          # COPY MAKE DEPOSITORY ON LOCAL MACHINE TO SOURCES_FOR_RUN_...
925       if [[ $silent = false ]]
926       then
927          printf "\n  *** copy MAKE_DEPOSITORY_${configuration_identifier} on local host to "
928          printf "\n      ${fast_io_catalog}/${sources_for_run_catalog} \n"
929       fi
930       rm -rf ${fast_io_catalog}/${sources_for_run_catalog}
931       mkdir -p ${fast_io_catalog}/${sources_for_run_catalog}
932       if [[ $? != 0 ]]
933       then
934          printf "\n  +++ SOURCES_FOR_RUN catalog cannot be created."
935          printf "\n      Check setting of variable fast_io_catalog in your config file."
936          locat=execution
937          exit
938       fi
939       cp ${make_depository}/${program_name}_current_version.tar  ${fast_io_catalog}/${sources_for_run_catalog}
940       cd $fast_io_catalog/${sources_for_run_catalog}
941       tar xf ${program_name}_current_version.tar
942
943
944          # COPY CONTENTS OF SOURCES_FOR_RUN_... TO SOURCES_FOR_RUN_...
945          # IN THE FAST_IO_CATALOG ON THE LOCAL MACHINE
946       if [[ $silent = false ]]
947       then
948          printf "\n  *** copy ${base_directory}/${sources_for_run_catalog} to"
949          printf "\n      ${fast_io_catalog}/${sources_for_run_catalog} on local host \n"
950       fi
951       cp  ${base_directory}/${sources_for_run_catalog}/{*,.[!.]*}  ${fast_io_catalog}/${sources_for_run_catalog}
952
953
954          # CREATE EXECUTABLE FROM THE NEW/MODIFIED SOURCE FILES, IF THERE ARE ANY
955       if [[ $(ls -1 ${base_directory}/${sources_for_run_catalog}/ | grep -c .$suf) != 0 ]]
956       then
957
958          if [[ $silent = false ]]
959          then
960             echo "  *** execute \"make\" on local host"
961          fi
962          [[ "$login_init_cmd" != "" ]]   &&  eval $login_init_cmd
963          [[ "$module_commands" != "" ]]  &&  eval $module_commands
964
965             # next is required to evaluate environment variables or commands used in the linker option
966          eval linker_options=\"$linker_options\"
967
968          make  $make_options  PROG=$program_name  F90=$compiler_name  COPT="$cpp_options"  F90FLAGS="$compiler_options"  LDFLAGS="$linker_options"
969
970          if [[ ${PIPESTATUS[0]} != 0 ]]
971          then
972
973             printf "\a\n  +++ error(s) occurred during compiling or linking for host configuration \"$configuration_identifier\" "
974             if [[ $silent = false ]]
975             then
976                answer=dummy
977                printf "\n"
978                while [[ "$answer" != c  &&  "$answer" != k ]]
979                do
980                   printf "  >>> continue / kill palmbuild (c/k) ? "
981                   read  answer
982                done
983                if [[ $answer = k ]]
984                then
985                   rm -rf ${fast_io_catalog}/${sources_for_run_catalog}
986                   locat=user_abort; exit
987                fi
988             else
989                   # ABORT ANYWAY
990                rm -rf ${fast_io_catalog}/${sources_for_run_catalog}
991                locat=user_abort; exit
992             fi
993          fi
994
995       else
996
997          echo "  *** nothing to compile for this run"
998
999       fi
1000
1001    fi
1002 fi
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