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source: palm/trunk/SCRIPTS/palmbuild @ 4512

Last change on this file since 4512 was 4481, checked in by maronga, 5 years ago
Bugfix for copyright updates in document_changes; copyright update applied to all files
Property svn:executable set to ``* Property svn:keywords set to `Id Rev`
File size: 35.6 KB

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1	#!/bin/bash
2
3	# palmbuild - script for compiling the PALM code and its utility programs
4
5	#------------------------------------------------------------------------------#
6	# This file is part of the PALM model system.
7	#
8	# PALM is free software: you can redistribute it and/or modify it under the terms
9	# of the GNU General Public License as published by the Free Software Foundation,
10	# either version 3 of the License, or (at your option) any later version.
11	#
12	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
13	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
14	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
15	#
16	# You should have received a copy of the GNU General Public License along with
17	# PALM. If not, see <http://www.gnu.org/licenses/>.
18	#
19	# Copyright 2017-2020 Leibniz Universitaet Hannover
20	#------------------------------------------------------------------------------#
21	#
22	# Current revisions:
23	# ------------------
24	#
25	#
26	# Former revisions:
27	# -----------------
28	# $Id: palmbuild 4481 2020-03-31 18:55:54Z monakurppa $
29	# Abort if SOURCES_FOR_RUN catalog cannot be created
30	#
31	# 4082 2019-07-10 14:42:00Z raasch
32	# bugfix for executing module commands and for interpreting linker options
33	# on local machines
34	#
35	# 3756 2019-02-20 11:24:32Z suehring
36	# Disable compilation of postprocessing tool for surface output, until
37	# crashes with unexpected segmentation faults with intel compiler are solved.
38	#
39	# 3725 2019-02-07 10:11:02Z raasch
40	# ssh-calls for compilations on remote systems modified to avoid output
41	# of login messages on specific systems changed again (reverted as before r3549)
42	#
43	# 3549 2018-11-21 15:44:44Z raasch
44	# ssh-calls for compilations on remote systems modified to avoid output
45	# of login messages on specific systems
46	#
47	# 3534 2018-11-19 15:35:16Z raasch
48	# build of inifor added,
49	# ssh-calls rearranged to avoid output of system/user-profile messages
50	#
51	# 3523 2018-11-13 16:09:31Z suehring
52	# Enable compilation of post-processing tool for surface output - interface
53	# for posix conform sytemcalls is implemented.
54	#
55	# 3499 2018-11-07 10:55:15Z suehring
56	# Temporarily avoid compilation of post-processing tool for surface output
57	# until a workaround for compiler-specific intrinsic functions is found.
58	#
59	# 3494 2018-11-06 14:51:27Z suehring
60	# Add tool for surface-output post-processing
61	#
62	# 3455 2018-10-30 14:12:31Z raasch
63	# options -h and -d renamed -c and -r, respectively
64	#
65	# 3312 2018-10-06 14:15:46Z knoop
66	# "host identifier" in header output renamed "config. identifier",
67	# host_configuration renamed configuration_identifier,
68	# jobname renamed run_identifier
69	# header output of PALM code revision,
70	# options -m, -s, and -S removed
71	#
72	# 3210 2018-08-28 07:31:13Z sward
73	# Bugfix: agent_preprocessing stays in MAKE_DEPOSITORY after compilation
74	#
75	# 3208 2018-08-27 13:10:50Z sward
76	# Added building of agent_preprocessing
77	#
78	# 3033 2018-05-23 15:26:19Z raasch
79	# "fname" renamed to "jobname"
80	#
81	# 2718 2018-01-02 08:49:38Z maronga
82	# Corrected "Former revisions" section
83	#
84	# 2696 2017-12-14 17:12:51Z kanani
85	# Change in file header (GPL part)
86	#
87	# 2566 2017-10-20 08:50:47Z raasch
88	# informative messages switched of almost completely in silent mode
89	# two header blocks merged into one
90	#
91	# 2506 2017-09-29 08:30:37Z raasch
92	# option -V added to check for an existing SOURCES_FOR_RUN_... folder
93	# host configuration added to SOURCES_FOR_RUN_... folder name
94	# SOURCES_FOR_RUN_... folder is deleted in case of compilation errors
95	# host_identifier renamed host_configuration
96	#
97	# 2500 2017-09-25 11:10:03Z raasch
98	# bugfix for r2492
99	#
100	# 2492 2017-09-21 14:18:48Z raasch
101	# ask for compilation, if SOURCES_FOR_RUN_... exists
102	#
103	# 2487 2017-09-21 11:30:10Z raasch
104	# bugfix: abort in case of compiling/linking errors in silent mode
105	#
106	# 2422 2017-09-08 08:25:41Z raasch
107	# initial revision
108	#
109	#------------------------------------------------------------------------------#
110	# palmbuild - script for compiling the PALM code and its utility programs
111	#
112	# Procedure to compile code on local and remote hosts using the
113	# make-mechanism. The source code must be provided on the local host.
114	#
115	# @note This script does not work on MAC OS
116	#------------------------------------------------------------------------------#
117
118
119	# VARIABLE DECLARATIONS + DEFAULT VALUES
120	calltime=""
121	column1=""
122	column2=""
123	configuration_identifier=default
124	global_revision=""
125	locat=normal
126	makefile=""
127	make_options=""
128	module_commands=""
129	program_name=palm
130	remote_ip=""
131	silent=false
132	ssh_key=""
133	suf=f90
134	use_existing_sources_folder=false
135	version="palmbuild 1.0 Rev$Rev: 4481 $"
136	working_directory=`pwd`
137
138
139	# ERROR HANDLING IN CASE OF EXIT
140	trap 'rm -rf ${source_path}/${configuration_identifier}_last_make_protocol
141	if [[ $locat != normal && $locat != control_c ]]
142	then
143	printf "\n\n+++ palmbuild crashed \n\n"
144	exit 1
145	elif [[ $locat != normal ]]
146	then
147	printf "\n+++ palmbuild killed by \"^C\" \n\n"
148	exit 2
149	else
150	if [[ $silent = false ]]
151	then
152	printf "\n --> palmbuild finished\n\n"
153	fi
154	exit 0
155	fi' exit
156
157
158	# ACTIONS IN CASE OF TERMINAL-BREAK (CONTROL-C):
159	trap 'locat=control_c
160	exit 1
161	' 2
162
163
164
165	# READ SHELLSCRIPT-OPTIONS
166	while getopts :c:r:uvV option
167	do
168	case $option in
169	(c) configuration_identifier=$OPTARG;;
170	(r) run_identifier=$OPTARG;;
171	(v) silent=true;;
172	(V) use_existing_sources_folder=true;;
173	(\?) printf "\n +++ unknown option $OPTARG \n";
174	locat=parameter; exit;;
175	esac
176	done
177
178
179	# BUILD THE CONFIGURATION-FILE NAME AND THE SOURCES_FOR_RUN-FOLDER NAME
180	config_file=.palm.config.$configuration_identifier
181	sources_for_run_catalog=SOURCES_FOR_RUN_${configuration_identifier}_$run_identifier
182
183
184	# CHECK, IF CONFIGURATION-FILE EXISTS
185	if [[ ! -f $config_file ]]
186	then
187	printf "\n +++ configuration file: "
188	printf "\n $config_file"
189	printf "\n does not exist"
190	locat=configuration; exit
191	fi
192
193
194	# ### is this really required?
195	config_file=$PWD/$config_file
196
197
198	# READ VARIABLE SETTINGS FROM CONFIG FILE LINE BY LINE
199	while read line
200	do
201
202	# FIRST REPLACE ENVIRONMENT-VARIABLES BY THEIR RESPECTIVE VALUES
203	eval line=\"$line\"
204
205
206	# INTERPRET THE LINE
207	if [[ "$(echo $line)" = "" ]]
208	then
209
210	# EMPTY LINE, NO ACTION
211	continue
212
213	elif [[ "$(echo $line \| cut -c1)" = "#" ]]
214	then
215
216	# LINE IS A COMMENT LINE
217	continue
218
219	elif [[ "$(echo $line \| cut -c1)" = "%" ]]
220	then
221
222	# LINE DEFINES AN ENVIRONMENT-VARIABLE
223	var=`echo $line \| cut -d" " -s -f1 \| cut -c2-`
224	value=`echo $line \| cut -d" " -s -f2-`
225
226	# REPLACE ":" BY " " IN COMPILER- CPP- OR LINKER-OPTIONS,
227	# "::" IS REPLACED BY ":".
228	#value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
229
230
231	# VALUE FROM THE CONFIGURATION-FILE IS ASSIGNED TO THE
232	# ENVIRONMENT-VARIABLE, BUT ONLY IF NO VALUE HAS BEEN ALREADY
233	# ASSIGNED WITHIN THIS SCRIPT (E.G. BY SCRIPT-OPTIONS).
234	# NON-ASSIGNED VARIABLES HAVE VALUE "" OR 0 (IN CASE OF INTEGER).
235	# HENCE THE GENERAL RULE IS: SCRIPT-OPTION OVERWRITES THE
236	# CONFIGURATION-FILE.
237	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
238	then
239	eval export $var="\$value"
240
241	# TERMINAL OUTPUT OF ENVIRONMENT-VARIABLES, IF TRACEBACK IS SWITCHED on
242	if [[ $do_trace = true ]]
243	then
244	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
245	fi
246	fi
247
248	else
249
250	# SKIP ALL OTHER LINES
251	continue
252
253	fi
254
255	done < $config_file
256
257
258	# CHECK, IF THE BASE DIRECTORY PATH HAS BEEN GIVEN
259	if [[ "$base_directory" = "" ]]
260	then
261	printf "\n +++ no base directory found in configuration file"
262	locat=config_file; exit
263	else
264	if [[ ! -d $base_directory ]]
265	then
266	printf "\n\n +++ base directory \"$base_directory\" "
267	printf "\n does not exist"
268	locat=source_path; exit
269	fi
270	fi
271
272
273	# CHECK SOURCE-CODE PATH
274	if [[ "$source_path" = "" ]]
275	then
276	printf "\n +++ no source path found in configuration file"
277	locat=config_file; exit
278	else
279	if [[ ! -d $source_path ]]
280	then
281	printf "\n\n +++ source path \"$source_path\" "
282	printf "\n does not exist"
283	locat=source_path; exit
284	fi
285	fi
286
287
288	# CHECK MAKEFILE
289	makefile=$source_path/Makefile
290	if [[ ! -f $makefile ]]
291	then
292	printf "\n +++ makefile: "
293	printf "\n $makefile"
294	printf "\n does not exist"
295	locat=makefile; exit
296	fi
297
298
299	# CHECK COMPILERNAME
300	if [[ "$compiler_name" = "" ]]
301	then
302	printf "\n +++ no compiler name found in configuration file"
303	locat=config_file; exit
304	fi
305
306
307	# CHECK SERIAL COMPILERNAME
308	if [[ "$compiler_name_ser" = "" ]]
309	then
310	printf "\n +++ no compiler name for serial compilation in configuration file"
311	locat=config_file; exit
312	fi
313
314
315	# DETERMINE SSH-KEY TO BE USED
316	if [[ "$ssh_key" != "" ]]
317	then
318	ssh_key="-i $HOME/.ssh/`echo $line \| cut -d" " -s -f2`"
319	fi
320
321
322	#CHECK CPP-OPTIONS
323	if [[ "$cpp_options" = "" ]]
324	then
325	printf "\n +++ WARNING: no cpp-options found in configuration file"
326	fi
327
328
329	# CHECK SETTINGS IN CASE OF COMPILING ON REMOTE MACHINE
330	if [[ "$remote_ip" != "" ]]
331	then
332
333	if [[ "$remote_username" = "" ]]
334	then
335	printf "\n +++ no user name given in configuration file"
336	locat=config_file; exit
337	fi
338
339	# GET SOURCE AND DEPOSITORY PATH ON THE REMOTE MACHINE WITHOUT EVALUATING
340	# THE $
341	# IF NOT GIVEN, USE THE LOCAL SOURCE AND DEPOSITORY PATH
342	line=`grep %remote_source_path $config_file`
343	if [[ "$line" != "" ]]
344	then
345	remote_source_path=`echo $line \| cut -d" " -s -f2`
346	else
347	line=`grep %source_path $config_file`
348	remote_source_path=`echo $line \| cut -d" " -s -f2`
349	fi
350
351	line=`grep %base_directory $config_file`
352	make_depository=`echo $line \| cut -d" " -s -f2`/MAKE_DEPOSITORY_${configuration_identifier}
353
354	else
355
356	make_depository=${base_directory}/MAKE_DEPOSITORY_${configuration_identifier}
357
358	fi
359
360
361	# GET THE GLOBAL REVISION-NUMBER OF THE SVN-REPOSITORY
362	global_revision=`svnversion $source_path 2>/dev/null`
363	global_revision="Rev: $global_revision"
364
365
366	# HEADER-OUTPUT (PART1: MESSAGES CONCERNING THE LOCAL HOST)
367	if [[ $silent = false ]]
368	then
369	calltime=$(date)
370	printf "\n"
371	printf "#------------------------------------------------------------------------# \n"
372	printf "\| %-40s%30s \| \n" "$version" "$calltime"
373	printf "\| %-40s%30s \| \n" "PALM code $global_revision" " "
374	printf "\| \| \n"
375	printf "\| %-13s%-57s \| \n" "called on:" "$(hostname) (IP:$local_ip)"
376	column2=$(echo $config_file \| cut -c1-57 )
377	printf "\| %-13s%-57s \| \n" "config file:" "$column2"
378	line=$(echo "$config_file" \| cut -c58-)
379	while [[ "$line" != "" ]]
380	do
381	column1=""
382	column2=$(echo $line \| cut -c1-57 )
383	printf "\| %-13s%-57s \| \n" "$column1" "$column2"
384	line=$(echo "$line" \| cut -c58-)
385	done
386	column2=$(echo $makefile \| cut -c1-57 )
387	printf "\| %-13s%-57s \| \n" "makefile:" "$column2"
388	line=$(echo "$makefile" \| cut -c58-)
389	while [[ "$line" != "" ]]
390	do
391	column1=""
392	column2=$(echo $line \| cut -c1-57 )
393	printf "\| %-13s%-57s \| \n" "$column1" "$column2"
394	line=$(echo "$line" \| cut -c58-)
395	done
396	column2=$(echo $source_path \| cut -c1-57 )
397	printf "\| %-13s%-57s \| \n" "source path:" "$column2"
398	line=$(echo "$source_path" \| cut -c58-)
399	while [[ "$line" != "" ]]
400	do
401	column1=""
402	column2=$(echo $line \| cut -c1-57 )
403	printf "\| %-13s%-57s \| \n" "$column1" "$column2"
404	line=$(echo "$line" \| cut -c58-)
405	done
406	printf "\| \| \n"
407
408	if [[ "$remote_ip" != "" ]]
409	then
410	column2="$configuration_identifier"
411	printf "\| %-20s%-50s \| \n" "config. identifier:" "$column2"
412	column2=$(echo "$make_depository" \| cut -c1-50 )
413	printf "\| %-20s%-50s \| \n" "remote depository:" "$column2"
414	else
415	column2="$configuration_identifier"
416	printf "\| %-20s%-50s \| \n" "config. identifier:" "$column2"
417	column2=$(echo "$make_depository" \| cut -c1-50 )
418	printf "\| %-20s%-50s \| \n" "local depository:" "$column2"
419	fi
420	line=$(echo "$make_depository" \| cut -c51-)
421	while [[ "$line" != "" ]]
422	do
423	column1=""
424	column2=$(echo "$line" \| cut -c1-50 )
425	printf "\| %-20s%-50s \| \n" "$column1" "$column2"
426	line=$(echo "$line" \| cut -c51-)
427	done
428
429	if [[ "$remote_ip" != "" ]]
430	then
431	printf "\| %-20s%-50s \| \n" "remote username:" "$remote_username"
432	printf "\| %-20s%-50s \| \n" "remote address:" "$remote_ip"
433	else
434	printf "\| %-20s%-50s \| \n" "username:" "$local_username"
435	printf "\| %-20s%-50s \| \n" "address:" "$local_ip"
436	fi
437
438	printf "\| %-20s%-50s \| \n" "compiler:" "$compiler_name"
439	printf "\| %-20s%-50s \| \n" "serial compiler:" "$compiler_name_ser"
440
441	if [[ "$make_options" != "" ]]
442	then
443	printf "\| %-20s%-50s \| \n" "make options:" "$make_options"
444	fi
445	column2=$(echo "$cpp_options" \| cut -c1-50 )
446	printf "\| %-20s%-50s \| \n" "cpp options:" "$column2"
447	line=$(echo "$cpp_options" \| cut -c51-)
448	while [[ "$line" != "" ]]
449	do
450	column1=""
451	column2=$(echo "$line" \| cut -c1-50 )
452	printf "\| %-20s%-50s \| \n" "$column1" "$column2"
453	line=$(echo "$line" \| cut -c51-)
454	done
455	column2=$(echo "$compiler_options" \| cut -c1-50 )
456	printf "\| %-20s%-50s \| \n" "compiler options:" "$column2"
457	line=$(echo "$compiler_options" \| cut -c51-)
458	while [[ "$line" != "" ]]
459	do
460	column1=""
461	column2=$(echo "$line" \| cut -c1-50 )
462	printf "\| %-20s%-50s \| \n" "$column1" "$column2"
463	line=$(echo "$line" \| cut -c51-)
464	done
465	column2=$(echo "$linker_options" \| cut -c1-50 )
466	printf "\| %-20s%-50s \| \n" "linker options:" "$column2"
467	line=$(echo "$linker_options" \| cut -c51-)
468	while [[ "$line" != "" ]]
469	do
470	column1=""
471	column2=$(echo "$line" \| cut -c1-50 )
472	printf "\| %-20s%-50s \| \n" "$column1" "$column2"
473	line=$(echo "$line" \| cut -c51-)
474	done
475	if [[ "$login_init_cmd" != "" ]]
476	then
477	column2=$(echo "$login_init_cmd" \| cut -c1-50 )
478	printf "\| %-20s%-50s \| \n" "login init command:" "$column2"
479	line=$(echo "$login_init_cmd" \| cut -c51-)
480	while [[ "$line" != "" ]]
481	do
482	column1=""
483	column2=$(echo "$line" \| cut -c1-50 )
484	printf "\| %-20s%-50s \| \n" "$column1" "$column2"
485	line=$(echo "$line" \| cut -c51-)
486	done
487	fi
488	if [[ "$module_commands" != "" ]]
489	then
490	column2=$(echo "$module_commands" \| cut -c1-50 )
491	printf "\| %-20s%-50s \| \n" "module command(s):" "$column2"
492	line=$(echo "$module_commands" \| cut -c51-)
493	while [[ "$line" != "" ]]
494	do
495	column1=""
496	column2=$(echo "$line" \| cut -c1-50 )
497	printf "\| %-20s%-50s \| \n" "$column1" "$column2"
498	line=$(echo "$line" \| cut -c51-)
499	done
500	fi
501	printf "#------------------------------------------------------------------------# \n"
502
503	answer=dummy
504	printf "\n"
505	while [[ "$answer" != y && "$answer" != Y && "$answer" != s && "$answer" != S && "$answer" != a && "$answer" != A ]]
506	do
507	printf " >>> continue (y(es)/a(bort)) ? "
508	read answer
509	done
510	if [[ $answer = a \|\| $answer = A ]]
511	then
512	locat=user_abort; exit
513	fi
514	fi
515
516
517	# TAR THE SOURCES AND MAKEFILES
518	# UTILITIES ARE TEMPORARILY COPIED TO THE SOURCE DIRECTORY IN ORDER TO TAR
519	# THEM TOO
520	if [[ $silent = false ]]
521	then
522	printf "\n\n *** tar of makefile and source files in"
523	printf "\n $source_path\n"
524	fi
525	cd $source_path
526	cp -p ../UTIL/combine_plot_fields.f90 .
527	cp -p ../UTIL/compare_palm_logs.f90 .
528	cp -p ../UTIL/agent_preprocessing/agent_preprocessing.f90 .
529	#cp -p ../UTIL/surface_output_processing/surface_output_to_vtk.f90 .
530	cp -p ../UTIL/inifor/src/inifor*f90 .
531	cp -p ../UTIL/Makefile_utilities .
532	tar -cf ${program_name}_sources.tar Makefile* *.$suf
533	rm combine_plot_fields.f90 compare_palm_logs.f90 agent_preprocessing.f90 Makefile_utilities inifor*f90 #surface_output_to_vtk.f90
534
535
536	# MAKE ON REMOTE HOST
537	if [[ "$remote_ip" != "" ]]
538	then
539
540	# NEXT IS THE BRANCH FOR CREATING THE MAKE_DEPOSITORY_...
541	if [[ "$run_identifier" = "" ]]
542	then
543
544	# COPY CURRENT SOURCE CODE TO SOURCE-CODE DIRECTORY ON THE REMOTE HOST
545	# CREATE THIS DIRECTORY, IF IT DOES NOT EXIST
546	if [[ $silent = false ]]
547	then
548	echo " "
549	echo " *** copying \"${program_name}_sources.tar\" to \"${remote_ip}:${make_depository}/\" "
550	ssh -q $ssh_key ${remote_username}@${remote_ip} "[[ ! -d ${make_depository} ]] && (echo \" *** ${make_depository} will be created\"; mkdir -p ${make_depository})" 2>&1
551	scp $ssh_key ${source_path}/${program_name}_sources.tar ${remote_username}@${remote_ip}:${make_depository}/${program_name}_sources.tar
552	else
553	ssh -q $ssh_key ${remote_username}@${remote_ip} "[[ ! -d ${make_depository} ]] && mkdir -p ${make_depository}" 2>&1
554	scp $ssh_key ${source_path}/${program_name}_sources.tar ${remote_username}@${remote_ip}:${make_depository}/${program_name}_sources.tar > /dev/null
555	fi
556
557
558
559
560	# UNTAR PREVIOUS UPDATE ON REMOTE HOST, IF EXISTING
561	if [[ $silent = false ]]
562	then
563	echo " *** untar previous update on remote host, if existing"
564	fi
565	ssh -q $ssh_key ${remote_username}@${remote_ip} "cd ${make_depository}; [[ -f ${program_name}_current_version.tar ]] && tar -xf ${program_name}_current_version.tar" 2>&1
566
567
568	# UNTAR CURRENT SOURCES ON REMOTE HOST
569	if [[ $silent = false ]]
570	then
571	echo " *** untar current sources on remote host"
572	fi
573	ssh -q $ssh_key ${remote_username}@${remote_ip} "cd ${make_depository}; tar -xf ${program_name}_sources.tar" 2>&1
574
575
576	# CREATE INIT AND MODULE COAMMNDS
577	[[ "$login_init_cmd" != "" ]] && login_init_cmd=${login_init_cmd}";"
578	[[ "$module_commands" != "" ]] && module_commands=${module_commands}";"
579
580
581	# FIRST CREATE EXECUTABLES FOR THE UTILITY ROUTINES
582	if [[ $silent = false ]]
583	then
584	echo " "
585	echo " *** creating utilities on remote host"
586	fi
587	make_call_string="make -f Makefile_utilities $make_options F90=$compiler_name F90_SER=$compiler_name_ser COPT=\"$cpp_options\" F90FLAGS=\"$compiler_options\" LDFLAGS=\"$linker_options\" "
588	### echo "$login_init_cmd $module_commands cd ${make_depository}; echo $make_call_string > LAST_MAKE_CALL; chmod u+x LAST_MAKE_CALL; $make_call_string; [[ \$? != 0 ]] && echo MAKE_ERROR" \| ssh -q $ssh_key ${remote_username}@${remote_ip} 2>/dev/null \| tee ${configuration_identifier}_last_make_protocol
589	ssh -q $ssh_key ${remote_username}@${remote_ip} "$login_init_cmd $module_commands cd ${make_depository}; echo $make_call_string > LAST_MAKE_CALL; chmod u+x LAST_MAKE_CALL; $make_call_string; [[ \$? != 0 ]] && echo MAKE_ERROR" 2>&1 \| tee ${configuration_identifier}_last_make_protocol
590
591	if [[ $(grep -c MAKE_ERROR ${configuration_identifier}_last_make_protocol) != 0 ]]
592	then
593	printf "\a\n +++ error(s) occurred during compiling or linking of utilities"
594	printf "\n for host configuration \"$configuration_identifier\" "
595	if [[ $silent = false ]]
596	then
597	answer=dummy
598	printf "\n"
599	while [[ "$answer" != c && "$answer" != k ]]
600	do
601	printf " >>> continue / list errors / kill palmbuild (c/l/k) ? "
602	read answer
603	if [[ "$answer" = l ]]
604	then
605	more ${configuration_identifier}_last_make_protocol
606	fi
607	done
608	if [[ $answer = k ]]
609	then
610	locat=user_abort; exit
611	fi
612	else
613	# ABORT ANYWAY
614	locat=user_abort; exit
615	fi
616	fi
617
618	# NOW COMPILE THE PALM CODE
619	# COMMANDS WILL BE COMMUNICATED TO SSH VIA PIPE, SINCE THIS WAY THE SYSTEM- AND
620	# USER-PROFILES OF THE SHELL ARE COMPLETELY EXECUTED (OTHERWISE, MAKE
621	# MAY E.G. MISS THE COMPILER-PATHS)
622	if [[ $silent = false ]]
623	then
624	echo " "
625	echo " *** compile PALM sources on remote host"
626	fi
627	make_call_string="make $make_options PROG=$program_name F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$compiler_options\" LDFLAGS=\"$linker_options\" "
628	### echo "$login_init_cmd $module_commands cd ${make_depository}; echo $make_call_string > LAST_MAKE_CALL; chmod u+x LAST_MAKE_CALL; $make_call_string; [[ \$? != 0 ]] && echo MAKE_ERROR" \| ssh -q $ssh_key ${remote_username}@${remote_ip} 2>&1 \| tee ${configuration_identifier}_last_make_protocol
629	ssh -q $ssh_key ${remote_username}@${remote_ip} "$login_init_cmd $module_commands cd ${make_depository}; echo $make_call_string > LAST_MAKE_CALL; chmod u+x LAST_MAKE_CALL; $make_call_string; [[ \$? != 0 ]] && echo MAKE_ERROR" 2>&1 \| tee ${configuration_identifier}_last_make_protocol
630
631	if [[ $(grep -c MAKE_ERROR ${configuration_identifier}_last_make_protocol) != 0 ]]
632	then
633	printf "\a\n +++ error(s) occurred during compiling or linking for host configuration \"$configuration_identifier\" "
634	if [[ $silent = false ]]
635	then
636	answer=dummy
637	printf "\n"
638	while [[ "$answer" != c && "$answer" != k ]]
639	do
640	printf " >>> continue / list errors / kill palmbuild (c/l/k) ? "
641	read answer
642	if [[ "$answer" = l ]]
643	then
644	more ${configuration_identifier}_last_make_protocol
645	fi
646	done
647	if [[ $answer = k ]]
648	then
649	locat=user_abort; exit
650	fi
651	else
652	# ABORT ANYWAY
653	locat=user_abort; exit
654	fi
655	fi
656
657	# TAR UPDATED VERSION ON THE REMOTE HOST
658	if [[ $silent = false ]]
659	then
660	printf "\n *** tar update on remote host ..."
661	fi
662	ssh -q $ssh_key ${remote_username}@${remote_ip} "cd ${make_depository}; chmod u+w ; tar -cf ${program_name}_current_version.tar ${program_name} .f90 .o .mod *.x" 2>&1
663
664
665	# NOW COMES THE BRANCH FOR CREATING THE EXECUTABLE FOR THE CURRENT RUN
666	# INCLUDING E.G. USER-INTERFACE ROUTINES. ALSO ADD OTHER UTILITY EXECUTABLES. EVERYTHING IS
667	# COLLECTED IN DIRECTORY SOURCES_FOR_RUN_...
668	elif [[ "$run_identifier" != "" ]]
669	then
670
671	# FIRST CHECK, IF COMPILED SOURCES FOR THIS RUN IDENTIFIER EXISTS
672	# AND ASK, IF THEY SHALL BE USED
673	ssh -q $ssh_key ${remote_username}@${remote_ip} "[[ -d ${fast_io_catalog}/${sources_for_run_catalog} ]] && echo sources for run found" 2>&1 > ${configuration_identifier}_last_make_protocol
674	if [[ $(grep -c "sources for run found" ${configuration_identifier}_last_make_protocol) != 0 && $use_existing_sources_folder = true ]]
675	then
676	printf "\a\n *** compiled sources for run \"$run_identifier\" found on remote host in folder"
677	printf "\n ${fast_io_catalog}/${sources_for_run_catalog}"
678	printf "\n will be used!"
679	exit
680	fi
681
682	# COPY MAKE DEPOSITORY ON REMOTE MACHINE TO SOURCES_FOR_RUN_...
683	if [[ $silent = false ]]
684	then
685	printf "\n *** copy MAKE_DEPOSITORY_${configuration_identifier} on remote host to $sources_for_run_catalog \n"
686	fi
687	ssh -q $ssh_key ${remote_username}@${remote_ip} "rm -rf ${fast_io_catalog}/${sources_for_run_catalog}; mkdir -p ${fast_io_catalog}/${sources_for_run_catalog}; [[ \$? != 0 ]] && exit 1; cp ${make_depository}/${program_name}_current_version.tar ${fast_io_catalog}/${sources_for_run_catalog}; cd ${fast_io_catalog}/${sources_for_run_catalog}; tar xf ${program_name}_current_version.tar" 2>&1
688	if [[ $? != 0 ]]
689	then
690	printf "\n +++ SOURCES_FOR_RUN catalog cannot be created."
691	printf "\n Check setting of variable fast_io_catalog in your config file."
692	locat=temporary_working_directory
693	exit
694	fi
695
696
697	# COPY CONTENTS OF SOURCES_FOR_RUN_... TO SOURCES_FOR_RUN_... ON THE REMOTE MACHINE
698	if [[ $silent = false ]]
699	then
700	printf "\n *** copy ${base_directory}/${sources_for_run_catalog}"
701	printf "\n to $sources_for_run_catalog on remote host \n"
702	fi
703	scp -q $ssh_key ${base_directory}/${sources_for_run_catalog}/{,.[!.]} ${remote_username}@${remote_ip}:${fast_io_catalog}/${sources_for_run_catalog}
704
705
706	# CREATE EXECUTABLE FROM THE NEW/MODIFIED SOURCE FILES, IF THERE ARE ANY
707	if [[ $(ls -1 ${base_directory}/${sources_for_run_catalog}/ \| grep -c .$suf) != 0 ]]
708	then
709
710	make_call_string="make $make_options PROG=$program_name F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$compiler_options\" LDFLAGS=\"$linker_options\" "
711	[[ "$login_init_cmd" != "" ]] && login_init_cmd=${login_init_cmd}";"
712	[[ "$module_commands" != "" ]] && module_commands=${module_commands}";"
713	if [[ $silent = false ]]
714	then
715	echo " *** execute \"make\" on remote host"
716	fi
717	ssh -q $ssh_key ${remote_username}@${remote_ip} "$login_init_cmd $module_commands cd ${fast_io_catalog}/${sources_for_run_catalog}; echo $make_call_string > LAST_MAKE_CALL; chmod u+x LAST_MAKE_CALL; $make_call_string; [[ \$? != 0 ]] && echo MAKE_ERROR" 2>&1 \| tee ${configuration_identifier}_last_make_protocol
718
719	if [[ $(grep -c MAKE_ERROR ${configuration_identifier}_last_make_protocol) != 0 ]]
720	then
721	printf "\a\n +++ error(s) occurred during compiling or linking for host configuration \"$configuration_identifier\" "
722	if [[ $silent = false ]]
723	then
724	answer=dummy
725	printf "\n"
726	while [[ "$answer" != c && "$answer" != k ]]
727	do
728	printf " >>> continue / list errors / kill palmbuild (c/l/k) ? "
729	read answer
730	if [[ "$answer" = l ]]
731	then
732	more ${configuration_identifier}_last_make_protocol
733	fi
734	done
735	if [[ $answer = k ]]
736	then
737	ssh -q $ssh_key ${remote_username}@${remote_ip} "rm -rf ${fast_io_catalog}/${sources_for_run_catalog}" 2>&1
738	locat=user_abort; exit
739	fi
740	else
741	# ABORT ANYWAY
742	ssh -q $ssh_key ${remote_username}@${remote_ip} "rm -rf ${fast_io_catalog}/${sources_for_run_catalog}" 2>&1
743	locat=user_abort; exit
744	fi
745	fi
746
747	else
748
749	echo " *** nothing to compile for this run"
750
751	fi
752
753	fi
754
755	rm -rf ${source_path}/${configuration_identifier}_last_make_protocol
756
757
758	# MAKE ON LOCAL HOST
759	else
760
761
762	# NEXT IS THE BRANCH FOR CREATING THE MAKE_DEPOSITORY_... ON THE
763	# LOCAL HOST
764	if [[ "$run_identifier" = "" ]]
765	then
766
767	# SET THE ENVIRONMENT (EXECUTE INIT AND MODULE COMMANDS)
768	if [[ "$login_init_cmd" != "" ]]
769	then
770	eval $login_init_cmd
771	fi
772
773	if [[ "$module_commands" != "" ]]
774	then
775	eval $module_commands
776	fi
777
778	# next is required to evaluate environment variables or commands used in the linker option
779	eval linker_options=\"$linker_options\"
780
781	# CREATE MAKE-DEPOSITORY, IF IT DOES NOT EXIST
782	eval make_depository=$make_depository
783	if [[ ! -d $make_depository ]]
784	then
785	if mkdir -p $make_depository
786	then
787	if [[ $silent = false ]]
788	then
789	printf "\n\n *** directory for local make depository:"
790	printf "\n $make_depository"
791	printf "\n was created\n"
792	fi
793	else
794	printf "\n +++ directory for local make depository:"
795	printf "\n $make_depository"
796	printf "\n cannot be created"
797	locat=local_depository; exit
798	fi
799	fi
800
801	# COPY SOURCE-CODE FROM REPOSITORY TO MAKE-DEPOSITORY
802	if [[ $silent = false ]]
803	then
804	echo " "
805	echo " *** untar current source sources on local host in"
806	echo " $make_depository"
807	fi
808	cd $make_depository
809	cp $source_path/${program_name}_sources.tar .
810	tar xf ${program_name}_sources.tar
811
812
813	# FIRST CREATE EXECUTABLES FOR THE UTILITY ROUTINES
814	if [[ $silent = false ]]
815	then
816	echo " "
817	echo " *** creating utilities on local host"
818	fi
819	make -f Makefile_utilities $make_options F90=$compiler_name F90_SER=$compiler_name_ser COPT="$cpp_options" F90FLAGS="$compiler_options" LDFLAGS="$linker_options" \| tee ${configuration_identifier}_last_make_protocol
820
821	if [[ ${PIPESTATUS[0]} != 0 ]]
822	then
823	printf "\a\n +++ error(s) occurred during compiling of the utilities for host configuration \"$configuration_identifier\" "
824	if [[ $silent = false ]]
825	then
826	answer=dummy
827	printf "\n"
828	while [[ "$answer" != c && "$answer" != k ]]
829	do
830	printf " >>> continue / list errors / kill palmbuild (c/l/k) ? "
831	read answer
832	if [[ "$answer" = l ]]
833	then
834	more ${configuration_identifier}_last_make_protocol
835	fi
836	done
837	if [[ $answer = k ]]
838	then
839	locat=user_abort; exit
840	fi
841	else
842	# ABORT ANYWAY
843	locat=user_abort; exit
844	fi
845	else
846	cp agent_preprocessing $source_path/../SCRIPTS/.
847	cp inifor $source_path/../SCRIPTS/.
848	fi
849
850
851	# CALL MAKE ON LOCAL HOST USING THE OPTIONS DETERMINED FURTHER ABOVE
852	if [[ $silent = false ]]
853	then
854	echo " "
855	echo " *** compile PALM sources on local host"
856	fi
857
858	make $make_options PROG=$program_name F90=$compiler_name COPT="$cpp_options" F90FLAGS="$compiler_options" LDFLAGS="$linker_options" 2>&1 \| tee ${configuration_identifier}_last_make_protocol
859
860	if [[ ${PIPESTATUS[0]} != 0 ]]
861	then
862	printf "\a\n +++ error(s) occurred during compiling or linking for host configuration \"$configuration_identifier\" "
863	if [[ $silent = false ]]
864	then
865	answer=dummy
866	printf "\n"
867	while [[ "$answer" != c && "$answer" != k ]]
868	do
869	printf " >>> continue / list errors / kill palmbuild (c/l/k) ? "
870	read answer
871	if [[ "$answer" = l ]]
872	then
873	more ${configuration_identifier}_last_make_protocol
874	fi
875	done
876	if [[ $answer = k ]]
877	then
878	locat=user_abort; exit
879	fi
880	else
881	# ABORT ANYWAY
882	locat=user_abort; exit
883	fi
884	fi
885
886
887	# TAR NEW VERSION ON LOCAL HOST
888	if [[ $silent = false ]]
889	then
890	printf "\n *** tar update on local host ..."
891	fi
892	tar -cf ${program_name}_current_version.tar ${program_name} .$suf .o .mod .x
893
894	else
895
896	# NOW COMES THE BRANCH FOR CREATING THE EXECUTABLE FOR THE CURRENT RUN
897	# INCLUDING E.G. USER-INTERFACE ROUTINES. ALSO ADD OTHER UTILITY EXECUTABLES. EVERYTHING IS
898	# COLLECTED IN DIRECTORY SOURCES_FOR_RUN_...
899
900	# FIRST CHECK, IF COMPILED SOURCES FOR THIS RUN IDENTIFIER EXISTS
901	# AND ASK, IF THEY SHALL BE USED
902	if [[ -d ${fast_io_catalog}/${sources_for_run_catalog} && $use_existing_sources_folder = true ]]
903	then
904	printf "\a\n *** compiled sources for run \"$run_identifier\" found on local host in folder"
905	printf "\n ${fast_io_catalog}/${sources_for_run_catalog}"
906	printf "\n will be used!"
907	exit
908	fi
909
910	# SECOND CHECK, IF A DEPOSITORY EXISTS ON THE LOCAL MACHINE
911	if [[ ! -d ${make_depository} ]]
912	then
913	printf "\n +++ directory for local make depository:"
914	printf "\n $make_depository"
915	printf "\n not found. Please run \"palmbuild -c $configuration_identifier\" "
916	locat=make_depository; exit
917	fi
918
919
920	# COPY MAKE DEPOSITORY ON LOCAL MACHINE TO SOURCES_FOR_RUN_...
921	if [[ $silent = false ]]
922	then
923	printf "\n *** copy MAKE_DEPOSITORY_${configuration_identifier} on local host to "
924	printf "\n ${fast_io_catalog}/${sources_for_run_catalog} \n"
925	fi
926	rm -rf ${fast_io_catalog}/${sources_for_run_catalog}
927	mkdir -p ${fast_io_catalog}/${sources_for_run_catalog}
928	if [[ $? != 0 ]]
929	then
930	printf "\n +++ SOURCES_FOR_RUN catalog cannot be created."
931	printf "\n Check setting of variable fast_io_catalog in your config file."
932	locat=execution
933	exit
934	fi
935	cp ${make_depository}/${program_name}_current_version.tar ${fast_io_catalog}/${sources_for_run_catalog}
936	cd $fast_io_catalog/${sources_for_run_catalog}
937	tar xf ${program_name}_current_version.tar
938
939
940	# COPY CONTENTS OF SOURCES_FOR_RUN_... TO SOURCES_FOR_RUN_...
941	# IN THE FAST_IO_CATALOG ON THE LOCAL MACHINE
942	if [[ $silent = false ]]
943	then
944	printf "\n *** copy ${base_directory}/${sources_for_run_catalog} to"
945	printf "\n ${fast_io_catalog}/${sources_for_run_catalog} on local host \n"
946	fi
947	cp ${base_directory}/${sources_for_run_catalog}/{,.[!.]} ${fast_io_catalog}/${sources_for_run_catalog}
948
949
950	# CREATE EXECUTABLE FROM THE NEW/MODIFIED SOURCE FILES, IF THERE ARE ANY
951	if [[ $(ls -1 ${base_directory}/${sources_for_run_catalog}/ \| grep -c .$suf) != 0 ]]
952	then
953
954	if [[ $silent = false ]]
955	then
956	echo " *** execute \"make\" on local host"
957	fi
958	[[ "$login_init_cmd" != "" ]] && eval $login_init_cmd
959	[[ "$module_commands" != "" ]] && eval $module_commands
960
961	# next is required to evaluate environment variables or commands used in the linker option
962	eval linker_options=\"$linker_options\"
963
964	make $make_options PROG=$program_name F90=$compiler_name COPT="$cpp_options" F90FLAGS="$compiler_options" LDFLAGS="$linker_options"
965
966	if [[ ${PIPESTATUS[0]} != 0 ]]
967	then
968
969	printf "\a\n +++ error(s) occurred during compiling or linking for host configuration \"$configuration_identifier\" "
970	if [[ $silent = false ]]
971	then
972	answer=dummy
973	printf "\n"
974	while [[ "$answer" != c && "$answer" != k ]]
975	do
976	printf " >>> continue / kill palmbuild (c/k) ? "
977	read answer
978	done
979	if [[ $answer = k ]]
980	then
981	rm -rf ${fast_io_catalog}/${sources_for_run_catalog}
982	locat=user_abort; exit
983	fi
984	else
985	# ABORT ANYWAY
986	rm -rf ${fast_io_catalog}/${sources_for_run_catalog}
987	locat=user_abort; exit
988	fi
989	fi
990
991	else
992
993	echo " *** nothing to compile for this run"
994
995	fi
996
997	fi
998	fi

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