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source: palm/trunk/SCRIPTS/palmbuild @ 3295

Last change on this file since 3295 was 3236, checked in by raasch, 6 years ago
host identifier in header output renamed config. identifier, host_configuration renamed configuration_identifier, jobname renamed run_identifier, palmbuild: header output of PALM code revision, options -m, -s, and -S removed, palmrun: run_id renamed run_id_number, job_id renamed run_id, option -r renamed -i
Property svn:executable set to ``* Property svn:keywords set to `Id Rev`
File size: 32.0 KB

Rev	Line
[2380]	1	#!/bin/bash
	2
	3	# palmbuild - script for compiling the PALM code and its utility programs
	4
	5	#------------------------------------------------------------------------------#
[2696]	6	# This file is part of the PALM model system.
[2380]	7	#
	8	# PALM is free software: you can redistribute it and/or modify it under the terms
	9	# of the GNU General Public License as published by the Free Software Foundation,
	10	# either version 3 of the License, or (at your option) any later version.
	11	#
	12	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
	13	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
	14	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
	15	#
	16	# You should have received a copy of the GNU General Public License along with
	17	# PALM. If not, see <http://www.gnu.org/licenses/>.
	18	#
[2718]	19	# Copyright 2017-2018 Leibniz Universitaet Hannover
[2380]	20	#------------------------------------------------------------------------------#
	21	#
	22	# Current revisions:
	23	# ------------------
	24	#
[2410]	25	#
[2380]	26	# Former revisions:
	27	# -----------------
[3033]	28	# $Id: palmbuild 3236 2018-09-10 09:07:06Z raasch $
[3236]	29	# "host identifier" in header output renamed "config. identifier",
	30	# host_configuration renamed configuration_identifier,
	31	# jobname renamed run_identifier
	32	# header output of PALM code revision,
	33	# options -m, -s, and -S removed
	34	#
	35	# 3210 2018-08-28 07:31:13Z sward
[3210]	36	# Bugfix: agent_preprocessing stays in MAKE_DEPOSITORY after compilation
	37	#
	38	# 3208 2018-08-27 13:10:50Z sward
[3208]	39	# Added building of agent_preprocessing
	40	#
	41	# 3033 2018-05-23 15:26:19Z raasch
[2834]	42	# "fname" renamed to "jobname"
	43	#
	44	# 2718 2018-01-02 08:49:38Z maronga
[2716]	45	# Corrected "Former revisions" section
	46	#
	47	# 2696 2017-12-14 17:12:51Z kanani
	48	# Change in file header (GPL part)
	49	#
	50	# 2566 2017-10-20 08:50:47Z raasch
[2566]	51	# informative messages switched of almost completely in silent mode
	52	# two header blocks merged into one
	53	#
	54	# 2506 2017-09-29 08:30:37Z raasch
[2506]	55	# option -V added to check for an existing SOURCES_FOR_RUN_... folder
	56	# host configuration added to SOURCES_FOR_RUN_... folder name
	57	# SOURCES_FOR_RUN_... folder is deleted in case of compilation errors
	58	# host_identifier renamed host_configuration
	59	#
	60	# 2500 2017-09-25 11:10:03Z raasch
[2500]	61	# bugfix for r2492
	62	#
	63	# 2492 2017-09-21 14:18:48Z raasch
[2489]	64	# ask for compilation, if SOURCES_FOR_RUN_... exists
	65	#
	66	# 2487 2017-09-21 11:30:10Z raasch
[2487]	67	# bugfix: abort in case of compiling/linking errors in silent mode
	68	#
	69	# 2422 2017-09-08 08:25:41Z raasch
[2422]	70	# initial revision
[2410]	71	#
[2380]	72	#------------------------------------------------------------------------------#
	73	# palmbuild - script for compiling the PALM code and its utility programs
	74	#
	75	# Procedure to compile code on local and remote hosts using the
	76	# make-mechanism. The source code must be provided on the local host.
	77	#
	78	# @note This script does not work on MAC OS
	79	#------------------------------------------------------------------------------#
	80
	81
	82	# VARIABLE DECLARATIONS + DEFAULT VALUES
	83	calltime=""
	84	column1=""
	85	column2=""
[3236]	86	configuration_identifier=default
	87	global_revision=""
[2380]	88	locat=normal
	89	makefile=""
	90	make_options=""
	91	module_commands=""
	92	program_name=palm
	93	remote_ip=""
	94	silent=false
	95	ssh_key=""
	96	suf=f90
[2506]	97	use_existing_sources_folder=false
[2732]	98	version="palmbuild 1.0 Rev$Rev: 3236 $"
[2380]	99	working_directory=`pwd`
	100
	101
	102
	103	# ERROR HANDLING
	104	# IN CASE OF EXIT:
[3236]	105	trap 'rm -rf ${source_path}/${configuration_identifier}_last_make_protocol
[2506]	106	if [[ $locat != normal ]]
[2380]	107	then
	108	printf "\n\n +++ palmbuild killed \n\n"
	109	exit 1
	110	else
[2566]	111	if [[ $silent = false ]]
	112	then
	113	printf "\n\n *** palmbuild finished \n\n"
	114	fi
[2380]	115	exit 0
[2489]	116	fi
	117	' exit
[2380]	118
	119
	120	# IN CASE OF TERMINAL-BREAK:
	121	trap 'printf "\n\n +++ palmbuild killed by \"^C\" \n\n"
[3236]	122	rm ${source_path}/${configuration_identifier}_last_make_protocol
[2380]	123	exit
	124	' 2
	125
	126
	127
	128	# READ SHELLSCRIPT-OPTIONS
[3236]	129	while getopts :d:h:uvV option
[2380]	130	do
	131	case $option in
[3236]	132	(d) run_identifier=$OPTARG;;
	133	(h) configuration_identifier=$OPTARG;;
[2380]	134	(v) silent=true;;
[2506]	135	(V) use_existing_sources_folder=true;;
[2380]	136	(\?) printf "\n +++ unknown option $OPTARG \n";
	137	locat=parameter; exit;;
	138	esac
	139	done
	140
	141
[3236]	142	# FOR COMPATIBILITY REASONS SET OLD ENVIRONMENT VARIABLES
	143	export fname=$run_identifier
	144	export jobname=$run_identifier
[2834]	145
	146
[2506]	147	# BUILD THE CONFIGURATION-FILE NAME AND THE SOURCES_FOR_RUN-FOLDER NAME
[3236]	148	config_file=.palm.config.$configuration_identifier
	149	sources_for_run_catalog=SOURCES_FOR_RUN_${configuration_identifier}_$run_identifier
[2380]	150
	151
	152	# CHECK, IF CONFIGURATION-FILE EXISTS
	153	if [[ ! -f $config_file ]]
	154	then
	155	printf "\n +++ configuration file: "
	156	printf "\n $config_file"
	157	printf "\n does not exist"
	158	locat=configuration; exit
	159	fi
	160
	161
	162	# ### is this really required?
	163	config_file=$PWD/$config_file
	164
	165
	166	# READ VARIABLE SETTINGS FROM CONFIG FILE LINE BY LINE
	167	while read line
	168	do
	169
	170	# FIRST REPLACE ENVIRONMENT-VARIABLES BY THEIR RESPECTIVE VALUES
	171	eval line=\"$line\"
	172
	173
	174	# INTERPRET THE LINE
	175	if [[ "$(echo $line)" = "" ]]
	176	then
	177
	178	# EMPTY LINE, NO ACTION
	179	continue
	180
	181	elif [[ "$(echo $line \| cut -c1)" = "#" ]]
	182	then
	183
	184	# LINE IS A COMMENT LINE
	185	continue
	186
	187	elif [[ "$(echo $line \| cut -c1)" = "%" ]]
	188	then
	189
	190	# LINE DEFINES AN ENVIRONMENT-VARIABLE
	191	var=`echo $line \| cut -d" " -s -f1 \| cut -c2-`
	192	value=`echo $line \| cut -d" " -s -f2-`
	193
	194	# REPLACE ":" BY " " IN COMPILER- CPP- OR LINKER-OPTIONS,
	195	# "::" IS REPLACED BY ":".
	196	#value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
	197
	198
	199	# VALUE FROM THE CONFIGURATION-FILE IS ASSIGNED TO THE
	200	# ENVIRONMENT-VARIABLE, BUT ONLY IF NO VALUE HAS BEEN ALREADY
	201	# ASSIGNED WITHIN THIS SCRIPT (E.G. BY SCRIPT-OPTIONS).
	202	# NON-ASSIGNED VARIABLES HAVE VALUE "" OR 0 (IN CASE OF INTEGER).
	203	# HENCE THE GENERAL RULE IS: SCRIPT-OPTION OVERWRITES THE
	204	# CONFIGURATION-FILE.
	205	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
	206	then
	207	eval export $var="\$value"
	208
	209	# TERMINAL OUTPUT OF ENVIRONMENT-VARIABLES, IF TRACEBACK IS SWITCHED on
	210	if [[ $do_trace = true ]]
	211	then
	212	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
	213	fi
	214	fi
	215
	216	else
	217
	218	# SKIP ALL OTHER LINES
	219	continue
	220
	221	fi
	222
	223	done < $config_file
	224
	225
[2404]	226	# CHECK, IF THE BASE DIRECTORY PATH HAS BEEN GIVEN
	227	if [[ "$base_directory" = "" ]]
	228	then
	229	printf "\n +++ no base directory found in configuration file"
	230	locat=config_file; exit
	231	else
	232	if [[ ! -d $base_directory ]]
	233	then
	234	printf "\n\n +++ base directory \"$base_directory\" "
	235	printf "\n does not exist"
	236	locat=source_path; exit
	237	fi
	238	fi
	239
	240
[2380]	241	# CHECK SOURCE-CODE PATH
	242	if [[ "$source_path" = "" ]]
	243	then
	244	printf "\n +++ no source path found in configuration file"
	245	locat=config_file; exit
	246	else
	247	if [[ ! -d $source_path ]]
	248	then
	249	printf "\n\n +++ source path \"$source_path\" "
	250	printf "\n does not exist"
	251	locat=source_path; exit
	252	fi
	253	fi
	254
	255
	256	# CHECK MAKEFILE
[3236]	257	makefile=$source_path/Makefile
[2380]	258	if [[ ! -f $makefile ]]
	259	then
	260	printf "\n +++ makefile: "
	261	printf "\n $makefile"
	262	printf "\n does not exist"
	263	locat=makefile; exit
	264	fi
	265
	266
	267	# CHECK COMPILERNAME
	268	if [[ "$compiler_name" = "" ]]
	269	then
	270	printf "\n +++ no compiler name found in configuration file"
	271	locat=config_file; exit
	272	fi
	273
	274
	275	# CHECK SERIAL COMPILERNAME
	276	if [[ "$compiler_name_ser" = "" ]]
	277	then
	278	printf "\n +++ no compiler name for serial compilation in configuration file"
	279	locat=config_file; exit
	280	fi
	281
	282
	283	# DETERMINE SSH-KEY TO BE USED
	284	if [[ "$ssh_key" != "" ]]
	285	then
	286	ssh_key="-i $HOME/.ssh/`echo $line \| cut -d" " -s -f2`"
	287	fi
	288
	289
	290	#CHECK CPP-OPTIONS
	291	if [[ "$cpp_options" = "" ]]
	292	then
	293	printf "\n +++ WARNING: no cpp-options found in configuration file"
	294	fi
	295
	296
	297	# CHECK SETTINGS IN CASE OF COMPILING ON REMOTE MACHINE
	298	if [[ "$remote_ip" != "" ]]
	299	then
	300
	301	if [[ "$remote_username" = "" ]]
	302	then
	303	printf "\n +++ no user name given in configuration file"
	304	locat=config_file; exit
	305	fi
	306
	307	# GET SOURCE AND DEPOSITORY PATH ON THE REMOTE MACHINE WITHOUT EVALUATING
	308	# THE $
	309	# IF NOT GIVEN, USE THE LOCAL SOURCE AND DEPOSITORY PATH
	310	line=`grep %remote_source_path $config_file`
	311	if [[ "$line" != "" ]]
	312	then
	313	remote_source_path=`echo $line \| cut -d" " -s -f2`
	314	else
	315	line=`grep %source_path $config_file`
	316	remote_source_path=`echo $line \| cut -d" " -s -f2`
	317	fi
	318
[2404]	319	line=`grep %base_directory $config_file`
[3236]	320	make_depository=`echo $line \| cut -d" " -s -f2`/MAKE_DEPOSITORY_${configuration_identifier}
[2380]	321
	322	else
	323
[3236]	324	make_depository=${base_directory}/MAKE_DEPOSITORY_${configuration_identifier}
[2380]	325
	326	fi
	327
[3236]	328
	329	# GET THE GLOBAL REVISION-NUMBER OF THE SVN-REPOSITORY
	330	global_revision=`svnversion $source_path 2>/dev/null`
	331	global_revision="Rev: $global_revision"
	332
	333
[2380]	334	# HEADER-OUTPUT (PART1: MESSAGES CONCERNING THE LOCAL HOST)
	335	if [[ $silent = false ]]
	336	then
[2566]	337	calltime=$(date)
	338	printf "\n"
	339	printf "#------------------------------------------------------------------------# \n"
	340	printf "\| %-40s%30s \| \n" "$version" "$calltime"
[3236]	341	printf "\| %-40s%30s \| \n" "PALM code $global_revision" " "
[2566]	342	printf "\| \| \n"
	343	printf "\| %-13s%-57s \| \n" "called on:" "$(hostname) (IP:$local_ip)"
	344	column2=$(echo $config_file \| cut -c1-57 )
	345	printf "\| %-13s%-57s \| \n" "config file:" "$column2"
	346	line=$(echo "$config_file" \| cut -c58-)
	347	while [[ "$line" != "" ]]
[2380]	348	do
[2566]	349	column1=""
	350	column2=$(echo $line \| cut -c1-57 )
	351	printf "\| %-13s%-57s \| \n" "$column1" "$column2"
	352	line=$(echo "$line" \| cut -c58-)
[2380]	353	done
[2566]	354	column2=$(echo $makefile \| cut -c1-57 )
	355	printf "\| %-13s%-57s \| \n" "makefile:" "$column2"
	356	line=$(echo "$makefile" \| cut -c58-)
	357	while [[ "$line" != "" ]]
	358	do
	359	column1=""
	360	column2=$(echo $line \| cut -c1-57 )
	361	printf "\| %-13s%-57s \| \n" "$column1" "$column2"
	362	line=$(echo "$line" \| cut -c58-)
	363	done
	364	column2=$(echo $source_path \| cut -c1-57 )
	365	printf "\| %-13s%-57s \| \n" "source path:" "$column2"
	366	line=$(echo "$source_path" \| cut -c58-)
	367	while [[ "$line" != "" ]]
	368	do
	369	column1=""
	370	column2=$(echo $line \| cut -c1-57 )
	371	printf "\| %-13s%-57s \| \n" "$column1" "$column2"
	372	line=$(echo "$line" \| cut -c58-)
	373	done
	374	printf "\| \| \n"
	375
[2380]	376	if [[ "$remote_ip" != "" ]]
	377	then
[3236]	378	column2="$configuration_identifier"
	379	printf "\| %-20s%-50s \| \n" "config. identifier:" "$column2"
[2404]	380	column2=$(echo "$make_depository" \| cut -c1-50 )
[2380]	381	printf "\| %-20s%-50s \| \n" "remote depository:" "$column2"
	382	else
[3236]	383	column2="$configuration_identifier"
	384	printf "\| %-20s%-50s \| \n" "config. identifier:" "$column2"
[2404]	385	column2=$(echo "$make_depository" \| cut -c1-50 )
[2380]	386	printf "\| %-20s%-50s \| \n" "local depository:" "$column2"
	387	fi
[2404]	388	line=$(echo "$make_depository" \| cut -c51-)
	389	while [[ "$line" != "" ]]
	390	do
	391	column1=""
	392	column2=$(echo "$line" \| cut -c1-50 )
	393	printf "\| %-20s%-50s \| \n" "$column1" "$column2"
	394	line=$(echo "$line" \| cut -c51-)
	395	done
[2566]	396
[2380]	397	if [[ "$remote_ip" != "" ]]
	398	then
	399	printf "\| %-20s%-50s \| \n" "remote username:" "$remote_username"
	400	printf "\| %-20s%-50s \| \n" "remote address:" "$remote_ip"
	401	else
	402	printf "\| %-20s%-50s \| \n" "username:" "$local_username"
	403	printf "\| %-20s%-50s \| \n" "address:" "$local_ip"
	404	fi
[2566]	405
[2380]	406	printf "\| %-20s%-50s \| \n" "compiler:" "$compiler_name"
	407	printf "\| %-20s%-50s \| \n" "serial compiler:" "$compiler_name_ser"
[2566]	408
[2380]	409	if [[ "$make_options" != "" ]]
	410	then
	411	printf "\| %-20s%-50s \| \n" "make options:" "$make_options"
	412	fi
	413	column2=$(echo "$cpp_options" \| cut -c1-50 )
	414	printf "\| %-20s%-50s \| \n" "cpp options:" "$column2"
	415	line=$(echo "$cpp_options" \| cut -c51-)
	416	while [[ "$line" != "" ]]
	417	do
	418	column1=""
	419	column2=$(echo "$line" \| cut -c1-50 )
	420	printf "\| %-20s%-50s \| \n" "$column1" "$column2"
	421	line=$(echo "$line" \| cut -c51-)
	422	done
	423	column2=$(echo "$compiler_options" \| cut -c1-50 )
	424	printf "\| %-20s%-50s \| \n" "compiler options:" "$column2"
	425	line=$(echo "$compiler_options" \| cut -c51-)
	426	while [[ "$line" != "" ]]
	427	do
	428	column1=""
	429	column2=$(echo "$line" \| cut -c1-50 )
	430	printf "\| %-20s%-50s \| \n" "$column1" "$column2"
	431	line=$(echo "$line" \| cut -c51-)
	432	done
[2388]	433	column2=$(echo "$linker_options" \| cut -c1-50 )
	434	printf "\| %-20s%-50s \| \n" "linker options:" "$column2"
	435	line=$(echo "$linker_options" \| cut -c51-)
[2380]	436	while [[ "$line" != "" ]]
	437	do
	438	column1=""
	439	column2=$(echo "$line" \| cut -c1-50 )
	440	printf "\| %-20s%-50s \| \n" "$column1" "$column2"
	441	line=$(echo "$line" \| cut -c51-)
	442	done
	443	if [[ "$login_init_cmd" != "" ]]
	444	then
	445	column2=$(echo "$login_init_cmd" \| cut -c1-50 )
	446	printf "\| %-20s%-50s \| \n" "login init command:" "$column2"
	447	line=$(echo "$login_init_cmd" \| cut -c51-)
	448	while [[ "$line" != "" ]]
	449	do
	450	column1=""
	451	column2=$(echo "$line" \| cut -c1-50 )
	452	printf "\| %-20s%-50s \| \n" "$column1" "$column2"
	453	line=$(echo "$line" \| cut -c51-)
	454	done
	455	fi
	456	if [[ "$module_commands" != "" ]]
	457	then
	458	column2=$(echo "$module_commands" \| cut -c1-50 )
	459	printf "\| %-20s%-50s \| \n" "module command(s):" "$column2"
	460	line=$(echo "$module_commands" \| cut -c51-)
	461	while [[ "$line" != "" ]]
	462	do
	463	column1=""
	464	column2=$(echo "$line" \| cut -c1-50 )
	465	printf "\| %-20s%-50s \| \n" "$column1" "$column2"
	466	line=$(echo "$line" \| cut -c51-)
	467	done
	468	fi
	469	printf "#------------------------------------------------------------------------# \n"
	470
[2566]	471	answer=dummy
	472	printf "\n"
	473	while [[ "$answer" != y && "$answer" != Y && "$answer" != c && "$answer" != C && "$answer" != s && "$answer" != S && "$answer" != a && "$answer" != A ]]
	474	do
	475	printf " >>> continue (y(es)/c(ontinue)/a(bort)) ? "
	476	read answer
	477	done
	478	if [[ $answer = a \|\| $answer = A ]]
[2380]	479	then
[2566]	480	locat=user_abort; exit
[2380]	481	fi
[2566]	482	if [[ $answer = c \|\| $answer = C ]]
	483	then
	484	silent=true
	485	fi
	486	fi
[2380]	487
	488
[2566]	489	# TAR THE SOURCES AND MAKEFILES
	490	# UTILITIES ARE TEMPORARILY COPIED TO THE SOURCE DIRECTORY IN ORDER TO TAR
	491	# THEM TOO
	492	if [[ $silent = false ]]
	493	then
	494	printf "\n\n *** tar of makefile and source files in"
	495	printf "\n $source_path\n"
	496	fi
	497	cd $source_path
	498	cp -p ../UTIL/combine_plot_fields.f90 .
	499	cp -p ../UTIL/compare_palm_logs.f90 .
[3208]	500	cp -p ../UTIL/agent_preprocessing/agent_preprocessing.f90 .
[2566]	501	cp -p ../UTIL/Makefile_utilities .
	502	tar -cf ${program_name}_sources.tar Makefile* *.$suf
[3208]	503	rm combine_plot_fields.f90 compare_palm_logs.f90 agent_preprocessing.f90 Makefile_utilities
[2566]	504
	505
	506	# MAKE ON REMOTE HOST
	507	if [[ "$remote_ip" != "" ]]
	508	then
	509
	510	# NEXT IS THE BRANCH FOR CREATING THE MAKE_DEPOSITORY_...
[3236]	511	if [[ "$run_identifier" = "" ]]
[2380]	512	then
	513
[2566]	514	# COPY CURRENT SOURCE CODE TO SOURCE-CODE DIRECTORY ON THE REMOTE HOST
	515	# CREATE THIS DIRECTORY, IF IT DOES NOT EXIST
	516	if [[ $silent = false ]]
[2380]	517	then
[2566]	518	echo " "
[2404]	519	echo " *** copying \"${program_name}_sources.tar\" to \"${remote_ip}:${make_depository}/\" "
	520	echo "[[ ! -d ${make_depository} ]] && (echo \" *** ${make_depository} will be created\"; mkdir -p ${make_depository})" \| ssh -q $ssh_key ${remote_username}@${remote_ip} 2>&1
	521	scp $ssh_key ${source_path}/${program_name}_sources.tar ${remote_username}@${remote_ip}:${make_depository}/${program_name}_sources.tar
[2566]	522	else
	523	echo "[[ ! -d ${make_depository} ]] && mkdir -p ${make_depository}" \| ssh -q $ssh_key ${remote_username}@${remote_ip} 2>&1
	524	scp $ssh_key ${source_path}/${program_name}_sources.tar ${remote_username}@${remote_ip}:${make_depository}/${program_name}_sources.tar > /dev/null
	525	fi
[2380]	526
	527
	528
[2566]	529
	530	# UNTAR PREVIOUS UPDATE ON REMOTE HOST, IF EXISTING
	531	if [[ $silent = false ]]
	532	then
[2380]	533	echo " *** untar previous update on remote host, if existing"
[2566]	534	fi
	535	echo "cd ${make_depository}; [[ -f ${program_name}_current_version.tar ]] && tar -xf ${program_name}_current_version.tar" \| ssh -q $ssh_key ${remote_username}@${remote_ip} 2>&1
[2380]	536
	537
[2566]	538	# UNTAR CURRENT SOURCES ON REMOTE HOST
	539	if [[ $silent = false ]]
	540	then
[2380]	541	echo " *** untar current sources on remote host"
[2566]	542	fi
	543	echo "cd ${make_depository}; tar -xf ${program_name}_sources.tar" \| ssh -q $ssh_key ${remote_username}@${remote_ip} 2>&1
[2380]	544
	545
[2566]	546	# CREATE INIT AND MODULE COAMMNDS
	547	[[ "$login_init_cmd" != "" ]] && login_init_cmd=${login_init_cmd}";"
	548	[[ "$module_commands" != "" ]] && module_commands=${module_commands}";"
[2380]	549
	550
[2566]	551	# FIRST CREATE EXECUTABLES FOR THE UTILITY ROUTINES
	552	if [[ $silent = false ]]
	553	then
[2380]	554	echo " "
	555	echo " *** creating utilities on remote host"
[2566]	556	fi
	557	make_call_string="make -f Makefile_utilities $make_options F90=$compiler_name F90_SER=$compiler_name_ser COPT=\"$cpp_options\" F90FLAGS=\"$compiler_options\" LDFLAGS=\"$linker_options\" "
[3236]	558	echo "$login_init_cmd $module_commands cd ${make_depository}; echo $make_call_string > LAST_MAKE_CALL; chmod u+x LAST_MAKE_CALL; $make_call_string; [[ \$? != 0 ]] && echo MAKE_ERROR" \| ssh -q $ssh_key ${remote_username}@${remote_ip} 2>&1 \| tee ${configuration_identifier}_last_make_protocol
[2380]	559
[3236]	560	if [[ $(grep -c MAKE_ERROR ${configuration_identifier}_last_make_protocol) != 0 ]]
[2566]	561	then
	562	printf "\a\n +++ error(s) occurred during compiling or linking of utilities"
[3236]	563	printf "\n for host configuration \"$configuration_identifier\" "
[2566]	564	if [[ $silent = false ]]
[2380]	565	then
[2566]	566	answer=dummy
	567	printf "\n"
	568	while [[ "$answer" != c && "$answer" != k ]]
	569	do
	570	printf " >>> continue / list errors / kill palmbuild (c/l/k) ? "
	571	read answer
	572	if [[ "$answer" = l ]]
[2380]	573	then
[3236]	574	more ${configuration_identifier}_last_make_protocol
[2380]	575	fi
[2566]	576	done
	577	if [[ $answer = k ]]
	578	then
[2487]	579	locat=user_abort; exit
[2380]	580	fi
[2566]	581	else
	582	# ABORT ANYWAY
	583	locat=user_abort; exit
[2380]	584	fi
[2566]	585	fi
[2380]	586
[2566]	587	# NOW COMPILE THE PALM CODE
	588	# COMMANDS WILL BE COMMUNICATED TO SSH VIA PIPE, SINCE THIS WAY THE SYSTEM- AND
	589	# USER-PROFILES OF THE SHELL ARE COMPLETELY EXECUTED (OTHERWISE, MAKE
	590	# MAY E.G. MISS THE COMPILER-PATHS)
	591	if [[ $silent = false ]]
	592	then
[2380]	593	echo " "
	594	echo " *** compile PALM sources on remote host"
[2566]	595	fi
	596	make_call_string="make $make_options PROG=$program_name F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$compiler_options\" LDFLAGS=\"$linker_options\" "
[3236]	597	echo "$login_init_cmd $module_commands cd ${make_depository}; echo $make_call_string > LAST_MAKE_CALL; chmod u+x LAST_MAKE_CALL; $make_call_string; [[ \$? != 0 ]] && echo MAKE_ERROR" \| ssh -q $ssh_key ${remote_username}@${remote_ip} 2>&1 \| tee ${configuration_identifier}_last_make_protocol
[2380]	598
[3236]	599	if [[ $(grep -c MAKE_ERROR ${configuration_identifier}_last_make_protocol) != 0 ]]
[2566]	600	then
[3236]	601	printf "\a\n +++ error(s) occurred during compiling or linking for host configuration \"$configuration_identifier\" "
[2566]	602	if [[ $silent = false ]]
[2380]	603	then
[2566]	604	answer=dummy
	605	printf "\n"
	606	while [[ "$answer" != c && "$answer" != k ]]
	607	do
	608	printf " >>> continue / list errors / kill palmbuild (c/l/k) ? "
	609	read answer
	610	if [[ "$answer" = l ]]
[2380]	611	then
[3236]	612	more ${configuration_identifier}_last_make_protocol
[2380]	613	fi
[2566]	614	done
	615	if [[ $answer = k ]]
	616	then
[2487]	617	locat=user_abort; exit
[2380]	618	fi
[2566]	619	else
	620	# ABORT ANYWAY
	621	locat=user_abort; exit
[2380]	622	fi
[2566]	623	fi
[2380]	624
[2566]	625	# TAR UPDATED VERSION ON THE REMOTE HOST
	626	if [[ $silent = false ]]
	627	then
[2380]	628	printf "\n *** tar update on remote host ..."
[2566]	629	fi
	630	echo "cd ${make_depository}; chmod u+w ; tar -cf ${program_name}_current_version.tar ${program_name} .f90 .o .mod *.x" \| ssh -q $ssh_key ${remote_username}@${remote_ip} 2>&1
[2380]	631
	632
[2566]	633	# NOW COMES THE BRANCH FOR CREATING THE EXECUTABLE FOR THE CURRENT RUN
	634	# INCLUDING E.G. USER-INTERFACE ROUTINES. ALSO ADD OTHER UTILITY EXECUTABLES. EVERYTHING IS
	635	# COLLECTED IN DIRECTORY SOURCES_FOR_RUN_...
[3236]	636	elif [[ "$run_identifier" != "" ]]
[2566]	637	then
	638
	639	# FIRST CHECK, IF COMPILED SOURCES FOR THIS RUN IDENTIFIER EXISTS
	640	# AND ASK, IF THEY SHALL BE USED
[3236]	641	echo "[[ -d ${fast_io_catalog}/${sources_for_run_catalog} ]] && echo sources for run found" \| ssh -q $ssh_key ${remote_username}@${remote_ip} 2>&1 > ${configuration_identifier}_last_make_protocol
	642	if [[ $(grep -c "sources for run found" ${configuration_identifier}_last_make_protocol) != 0 && $use_existing_sources_folder = true ]]
[2380]	643	then
[3236]	644	printf "\a\n *** compiled sources for run \"$run_identifier\" found on remote host in folder"
[2566]	645	printf "\n ${fast_io_catalog}/${sources_for_run_catalog}"
	646	printf "\n will be used!"
	647	exit
	648	fi
[2380]	649
[2566]	650	# COPY MAKE DEPOSITORY ON REMOTE MACHINE TO SOURCES_FOR_RUN_...
	651	if [[ $silent = false ]]
	652	then
[3236]	653	printf "\n *** copy MAKE_DEPOSITORY_${configuration_identifier} on remote host to $sources_for_run_catalog \n"
[2566]	654	fi
	655	echo "rm -rf ${fast_io_catalog}/${sources_for_run_catalog}; mkdir -p ${fast_io_catalog}/${sources_for_run_catalog}; cp ${make_depository}/${program_name}_current_version.tar ${fast_io_catalog}/${sources_for_run_catalog}; cd ${fast_io_catalog}/${sources_for_run_catalog}; tar xf ${program_name}_current_version.tar" \| ssh -q $ssh_key ${remote_username}@${remote_ip} 2>&1
[2380]	656
	657
[2566]	658	# COPY CONTENTS OF SOURCES_FOR_RUN_... TO SOURCES_FOR_RUN_... ON THE REMOTE MACHINE
	659	if [[ $silent = false ]]
	660	then
[2506]	661	printf "\n *** copy ${base_directory}/${sources_for_run_catalog}"
	662	printf "\n to $sources_for_run_catalog on remote host \n"
[2566]	663	fi
	664	scp -q $ssh_key ${base_directory}/${sources_for_run_catalog}/{,.[!.]} ${remote_username}@${remote_ip}:${fast_io_catalog}/${sources_for_run_catalog}
[2380]	665
	666
[2566]	667	# CREATE EXECUTABLE FROM THE NEW/MODIFIED SOURCE FILES, IF THERE ARE ANY
	668	if [[ $(ls -1 ${base_directory}/${sources_for_run_catalog}/ \| grep -c .$suf) != 0 ]]
	669	then
	670
	671	make_call_string="make $make_options PROG=$program_name F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$compiler_options\" LDFLAGS=\"$linker_options\" "
	672	[[ "$login_init_cmd" != "" ]] && login_init_cmd=${login_init_cmd}";"
	673	[[ "$module_commands" != "" ]] && module_commands=${module_commands}";"
	674	if [[ $silent = false ]]
[2380]	675	then
	676	echo " *** execute \"make\" on remote host"
[2566]	677	fi
[3236]	678	echo "$login_init_cmd $module_commands cd ${fast_io_catalog}/${sources_for_run_catalog}; echo $make_call_string > LAST_MAKE_CALL; chmod u+x LAST_MAKE_CALL; $make_call_string; [[ \$? != 0 ]] && echo MAKE_ERROR" \| ssh -q $ssh_key ${remote_username}@${remote_ip} 2>&1 \| tee ${configuration_identifier}_last_make_protocol
[2380]	679
[3236]	680	if [[ $(grep -c MAKE_ERROR ${configuration_identifier}_last_make_protocol) != 0 ]]
[2566]	681	then
[3236]	682	printf "\a\n +++ error(s) occurred during compiling or linking for host configuration \"$configuration_identifier\" "
[2566]	683	if [[ $silent = false ]]
[2380]	684	then
[2566]	685	answer=dummy
	686	printf "\n"
	687	while [[ "$answer" != c && "$answer" != k ]]
	688	do
	689	printf " >>> continue / list errors / kill palmbuild (c/l/k) ? "
	690	read answer
	691	if [[ "$answer" = l ]]
[2380]	692	then
[3236]	693	more ${configuration_identifier}_last_make_protocol
[2380]	694	fi
[2566]	695	done
	696	if [[ $answer = k ]]
	697	then
[2506]	698	echo "rm -rf ${fast_io_catalog}/${sources_for_run_catalog}" \| ssh -q $ssh_key ${remote_username}@${remote_ip} 2>&1
[2487]	699	locat=user_abort; exit
[2380]	700	fi
[2566]	701	else
	702	# ABORT ANYWAY
	703	echo "rm -rf ${fast_io_catalog}/${sources_for_run_catalog}" \| ssh -q $ssh_key ${remote_username}@${remote_ip} 2>&1
	704	locat=user_abort; exit
[2380]	705	fi
[2566]	706	fi
[2380]	707
[2566]	708	else
[2380]	709
[2566]	710	echo " *** nothing to compile for this run"
[2380]	711
	712	fi
	713
[2566]	714	fi
[2380]	715
[3236]	716	rm -rf ${source_path}/${configuration_identifier}_last_make_protocol
[2380]	717
	718
[2566]	719	# MAKE ON LOCAL HOST
	720	else
[2380]	721
[2566]	722
	723	# NEXT IS THE BRANCH FOR CREATING THE MAKE_DEPOSITORY_... ON THE
	724	# LOCAL HOST
[3236]	725	if [[ "$run_identifier" = "" ]]
[2566]	726	then
	727
	728	# SET THE ENVIRONMENT (EXECUTE INIT AND MODULE COMMANDS)
	729	if [[ "$login_init_cmd" != "" ]]
[2380]	730	then
[2566]	731	$login_init_cmd
	732	fi
[2380]	733
[2566]	734	if [[ "$module_commands" != "" ]]
	735	then
	736	$module_commands
	737	fi
[2380]	738
	739
[2566]	740	# CREATE MAKE-DEPOSITORY, IF IT DOES NOT EXIST
	741	eval make_depository=$make_depository
	742	if [[ ! -d $make_depository ]]
	743	then
	744	if mkdir -p $make_depository
[2380]	745	then
[2566]	746	if [[ $silent = false ]]
[2380]	747	then
	748	printf "\n\n *** directory for local make depository:"
[2404]	749	printf "\n $make_depository"
[2380]	750	printf "\n was created\n"
	751	fi
[2566]	752	else
	753	printf "\n +++ directory for local make depository:"
	754	printf "\n $make_depository"
	755	printf "\n cannot be created"
	756	locat=local_depository; exit
[2380]	757	fi
[2566]	758	fi
[2380]	759
[2566]	760	# COPY SOURCE-CODE FROM REPOSITORY TO MAKE-DEPOSITORY
	761	if [[ $silent = false ]]
	762	then
[2380]	763	echo " "
	764	echo " *** untar current source sources on local host in"
[2404]	765	echo " $make_depository"
[2566]	766	fi
	767	cd $make_depository
	768	cp $source_path/${program_name}_sources.tar .
	769	tar xf ${program_name}_sources.tar
[2380]	770
	771
[2566]	772	# FIRST CREATE EXECUTABLES FOR THE UTILITY ROUTINES
	773	if [[ $silent = false ]]
	774	then
[2380]	775	echo " "
	776	echo " *** creating utilities on local host"
[2566]	777	fi
	778	make -f Makefile_utilities $make_options F90=$compiler_name F90_SER=$compiler_name_ser COPT="$cpp_options" F90FLAGS="$compiler_options" LDFLAGS="$linker_options"
[3208]	779	mv agent_preprocessing $source_path/../SCRIPTS/.
[2380]	780
	781
[2566]	782	# CALL MAKE ON LOCAL HOST USING THE OPTIONS DETERMINED FURTHER ABOVE
	783	if [[ $silent = false ]]
	784	then
[2380]	785	echo " "
	786	echo " *** compile PALM sources on local host"
[2566]	787	fi
[2380]	788
[3236]	789	make $make_options PROG=$program_name F90=$compiler_name COPT="$cpp_options" F90FLAGS="$compiler_options" LDFLAGS="$linker_options" 2>&1 \| tee ${configuration_identifier}_last_make_protocol
[2380]	790
[2566]	791	if [[ $? != 0 ]]
	792	then
[3236]	793	printf "\a\n +++ error(s) occurred during compiling or linking for host configuration \"$configuration_identifier\" "
[2566]	794	if [[ $silent = false ]]
[2380]	795	then
[2566]	796	answer=dummy
	797	printf "\n"
	798	while [[ "$answer" != c && "$answer" != k ]]
	799	do
	800	printf " >>> continue / list errors / kill palmbuild (c/l/k) ? "
	801	read answer
	802	if [[ "$answer" = l ]]
[2380]	803	then
[3236]	804	more ${configuration_identifier}_last_make_protocol
[2380]	805	fi
[2566]	806	done
	807	if [[ $answer = k ]]
	808	then
[2487]	809	locat=user_abort; exit
[2380]	810	fi
[2566]	811	else
	812	# ABORT ANYWAY
	813	locat=user_abort; exit
[2380]	814	fi
[2566]	815	fi
[2380]	816
	817
[2566]	818	# TAR NEW VERSION ON LOCAL HOST
	819	if [[ $silent = false ]]
	820	then
[2380]	821	printf "\n *** tar update on local host ..."
[2566]	822	fi
	823	tar -cf ${program_name}_current_version.tar ${program_name} .$suf .o .mod .x
[2380]	824
[2566]	825	else
[2380]	826
[2566]	827	# NOW COMES THE BRANCH FOR CREATING THE EXECUTABLE FOR THE CURRENT RUN
	828	# INCLUDING E.G. USER-INTERFACE ROUTINES. ALSO ADD OTHER UTILITY EXECUTABLES. EVERYTHING IS
	829	# COLLECTED IN DIRECTORY SOURCES_FOR_RUN_...
[2380]	830
[2566]	831	# FIRST CHECK, IF COMPILED SOURCES FOR THIS RUN IDENTIFIER EXISTS
	832	# AND ASK, IF THEY SHALL BE USED
	833	if [[ -d ${fast_io_catalog}/${sources_for_run_catalog} && $use_existing_sources_folder = true ]]
	834	then
[3236]	835	printf "\a\n *** compiled sources for run \"$run_identifier\" found on local host in folder"
[2566]	836	printf "\n ${fast_io_catalog}/${sources_for_run_catalog}"
	837	printf "\n will be used!"
	838	exit
	839	fi
[2489]	840
[2566]	841	# SECOND CHECK, IF A DEPOSITORY EXISTS ON THE LOCAL MACHINE
	842	if [[ ! -d ${make_depository} ]]
	843	then
	844	printf "\n +++ directory for local make depository:"
	845	printf "\n $make_depository"
[3236]	846	printf "\n not found. Please run \"palmbuild -h $configuration_identifier\" "
[2566]	847	locat=make_depository; exit
	848	fi
[2380]	849
	850
[2566]	851	# COPY MAKE DEPOSITORY ON LOCAL MACHINE TO SOURCES_FOR_RUN_...
	852	if [[ $silent = false ]]
	853	then
[3236]	854	printf "\n *** copy MAKE_DEPOSITORY_${configuration_identifier} on local host to "
[2506]	855	printf "\n ${fast_io_catalog}/${sources_for_run_catalog} \n"
[2566]	856	fi
	857	rm -rf ${fast_io_catalog}/${sources_for_run_catalog}
	858	mkdir -p ${fast_io_catalog}/${sources_for_run_catalog}
	859	cp ${make_depository}/${program_name}_current_version.tar ${fast_io_catalog}/${sources_for_run_catalog}
	860	cd $fast_io_catalog/${sources_for_run_catalog}
	861	tar xf ${program_name}_current_version.tar
[2380]	862
	863
[2566]	864	# COPY CONTENTS OF SOURCES_FOR_RUN_... TO SOURCES_FOR_RUN_...
	865	# IN THE FAST_IO_CATALOG ON THE LOCAL MACHINE
	866	if [[ $silent = false ]]
	867	then
[2506]	868	printf "\n *** copy ${base_directory}/${sources_for_run_catalog} to"
	869	printf "\n ${fast_io_catalog}/${sources_for_run_catalog} on local host \n"
[2566]	870	fi
	871	cp ${base_directory}/${sources_for_run_catalog}/{,.[!.]} ${fast_io_catalog}/${sources_for_run_catalog}
[2380]	872
	873
[2566]	874	# CREATE EXECUTABLE FROM THE NEW/MODIFIED SOURCE FILES, IF THERE ARE ANY
	875	if [[ $(ls -1 ${base_directory}/${sources_for_run_catalog}/ \| grep -c .$suf) != 0 ]]
	876	then
	877
	878	if [[ $silent = false ]]
[2380]	879	then
	880	echo " *** execute \"make\" on local host"
[2566]	881	fi
	882	[[ "$login_init_cmd" != "" ]] && $login_init_cmd
	883	[[ "$module_commands" != "" ]] && $module_commands
[2380]	884
[2566]	885	make $make_options PROG=$program_name F90=$compiler_name COPT="$cpp_options" F90FLAGS="$compiler_options" LDFLAGS="$linker_options"
[2380]	886
[2566]	887	if [[ $? != 0 ]]
	888	then
	889
[3236]	890	printf "\a\n +++ error(s) occurred during compiling or linking for host configuration \"$configuration_identifier\" "
[2566]	891	if [[ $silent = false ]]
[2380]	892	then
[2566]	893	answer=dummy
	894	printf "\n"
	895	while [[ "$answer" != c && "$answer" != k ]]
	896	do
	897	printf " >>> continue / kill palmbuild (c/k) ? "
	898	read answer
	899	done
	900	if [[ $answer = k ]]
[2380]	901	then
[2506]	902	rm -rf ${fast_io_catalog}/${sources_for_run_catalog}
[2487]	903	locat=user_abort; exit
[2380]	904	fi
[2566]	905	else
	906	# ABORT ANYWAY
	907	rm -rf ${fast_io_catalog}/${sources_for_run_catalog}
	908	locat=user_abort; exit
[2380]	909	fi
[2566]	910	fi
[2380]	911
[2566]	912	else
[2380]	913
[2566]	914	echo " *** nothing to compile for this run"
[2380]	915
[2566]	916	fi
[2380]	917
	918	fi
[2566]	919	fi

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