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source: palm/trunk/SCRIPTS/palmbuild @ 3210

Last change on this file since 3210 was 3210, checked in by sward, 6 years ago
Minor bugfix in agent_preprocessing
Property svn:executable set to ``* Property svn:keywords set to `Id Rev`
File size: 31.3 KB

Rev	Line
[2380]	1	#!/bin/bash
	2
	3	# palmbuild - script for compiling the PALM code and its utility programs
	4
	5	#------------------------------------------------------------------------------#
[2696]	6	# This file is part of the PALM model system.
[2380]	7	#
	8	# PALM is free software: you can redistribute it and/or modify it under the terms
	9	# of the GNU General Public License as published by the Free Software Foundation,
	10	# either version 3 of the License, or (at your option) any later version.
	11	#
	12	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
	13	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
	14	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
	15	#
	16	# You should have received a copy of the GNU General Public License along with
	17	# PALM. If not, see <http://www.gnu.org/licenses/>.
	18	#
[2718]	19	# Copyright 2017-2018 Leibniz Universitaet Hannover
[2380]	20	#------------------------------------------------------------------------------#
	21	#
	22	# Current revisions:
	23	# ------------------
	24	#
[2410]	25	#
[2380]	26	# Former revisions:
	27	# -----------------
[3033]	28	# $Id: palmbuild 3210 2018-08-28 07:31:13Z sward $
[3210]	29	# Bugfix: agent_preprocessing stays in MAKE_DEPOSITORY after compilation
	30	#
	31	# 3208 2018-08-27 13:10:50Z sward
[3208]	32	# Added building of agent_preprocessing
	33	#
	34	# 3033 2018-05-23 15:26:19Z raasch
[2834]	35	# "fname" renamed to "jobname"
	36	#
	37	# 2718 2018-01-02 08:49:38Z maronga
[2716]	38	# Corrected "Former revisions" section
	39	#
	40	# 2696 2017-12-14 17:12:51Z kanani
	41	# Change in file header (GPL part)
	42	#
	43	# 2566 2017-10-20 08:50:47Z raasch
[2566]	44	# informative messages switched of almost completely in silent mode
	45	# two header blocks merged into one
	46	#
	47	# 2506 2017-09-29 08:30:37Z raasch
[2506]	48	# option -V added to check for an existing SOURCES_FOR_RUN_... folder
	49	# host configuration added to SOURCES_FOR_RUN_... folder name
	50	# SOURCES_FOR_RUN_... folder is deleted in case of compilation errors
	51	# host_identifier renamed host_configuration
	52	#
	53	# 2500 2017-09-25 11:10:03Z raasch
[2500]	54	# bugfix for r2492
	55	#
	56	# 2492 2017-09-21 14:18:48Z raasch
[2489]	57	# ask for compilation, if SOURCES_FOR_RUN_... exists
	58	#
	59	# 2487 2017-09-21 11:30:10Z raasch
[2487]	60	# bugfix: abort in case of compiling/linking errors in silent mode
	61	#
	62	# 2422 2017-09-08 08:25:41Z raasch
[2422]	63	# initial revision
[2410]	64	#
[2380]	65	#------------------------------------------------------------------------------#
	66	# palmbuild - script for compiling the PALM code and its utility programs
	67	#
	68	# Procedure to compile code on local and remote hosts using the
	69	# make-mechanism. The source code must be provided on the local host.
	70	#
	71	# @note This script does not work on MAC OS
	72	#------------------------------------------------------------------------------#
	73
	74
	75	# VARIABLE DECLARATIONS + DEFAULT VALUES
	76	calltime=""
	77	column1=""
	78	column2=""
[2506]	79	host_configuration=default
[2380]	80	locat=normal
	81	makefile=""
	82	make_options=""
	83	module_commands=""
	84	program_name=palm
	85	remote_ip=""
	86	silent=false
	87	ssh_key=""
	88	suf=f90
[2506]	89	use_existing_sources_folder=false
[2732]	90	version="palmbuild 1.0 Rev$Rev: 3210 $"
[2380]	91	working_directory=`pwd`
	92
	93
	94
	95	# ERROR HANDLING
	96	# IN CASE OF EXIT:
[2506]	97	trap 'rm -rf ${source_path}/${host_configuration}_last_make_protocol
	98	if [[ $locat != normal ]]
[2380]	99	then
	100	printf "\n\n +++ palmbuild killed \n\n"
	101	exit 1
	102	else
[2566]	103	if [[ $silent = false ]]
	104	then
	105	printf "\n\n *** palmbuild finished \n\n"
	106	fi
[2380]	107	exit 0
[2489]	108	fi
	109	' exit
[2380]	110
	111
	112	# IN CASE OF TERMINAL-BREAK:
	113	trap 'printf "\n\n +++ palmbuild killed by \"^C\" \n\n"
[2506]	114	rm ${source_path}/${host_configuration}_last_make_protocol
[2380]	115	exit
	116	' 2
	117
	118
	119
	120	# READ SHELLSCRIPT-OPTIONS
[2506]	121	while getopts :d:h:m:s:S:uvV option
[2380]	122	do
	123	case $option in
[2834]	124	(d) jobname=$OPTARG;;
[2506]	125	(h) host_configuration=$OPTARG;;
[2380]	126	(m) makefile=$OPTARG;;
	127	(s) suf=$OPTARG;;
	128	(S) source_list="$OPTARG";;
	129	(v) silent=true;;
[2506]	130	(V) use_existing_sources_folder=true;;
[2380]	131	(\?) printf "\n +++ unknown option $OPTARG \n";
	132	locat=parameter; exit;;
	133	esac
	134	done
	135
	136
[2834]	137	# FOR COMPATIBILITY REASONS SET OLD ENVIRONMENT VARIABLE
	138	export fname=$jobname
	139
	140
[2506]	141	# BUILD THE CONFIGURATION-FILE NAME AND THE SOURCES_FOR_RUN-FOLDER NAME
	142	config_file=.palm.config.$host_configuration
[2834]	143	sources_for_run_catalog=SOURCES_FOR_RUN_${host_configuration}_$jobname
[2380]	144
	145
	146	# CHECK, IF CONFIGURATION-FILE EXISTS
	147	if [[ ! -f $config_file ]]
	148	then
	149	printf "\n +++ configuration file: "
	150	printf "\n $config_file"
	151	printf "\n does not exist"
	152	locat=configuration; exit
	153	fi
	154
	155
	156	# ### is this really required?
	157	config_file=$PWD/$config_file
	158
	159
	160	# READ VARIABLE SETTINGS FROM CONFIG FILE LINE BY LINE
	161	while read line
	162	do
	163
	164	# FIRST REPLACE ENVIRONMENT-VARIABLES BY THEIR RESPECTIVE VALUES
	165	eval line=\"$line\"
	166
	167
	168	# INTERPRET THE LINE
	169	if [[ "$(echo $line)" = "" ]]
	170	then
	171
	172	# EMPTY LINE, NO ACTION
	173	continue
	174
	175	elif [[ "$(echo $line \| cut -c1)" = "#" ]]
	176	then
	177
	178	# LINE IS A COMMENT LINE
	179	continue
	180
	181	elif [[ "$(echo $line \| cut -c1)" = "%" ]]
	182	then
	183
	184	# LINE DEFINES AN ENVIRONMENT-VARIABLE
	185	var=`echo $line \| cut -d" " -s -f1 \| cut -c2-`
	186	value=`echo $line \| cut -d" " -s -f2-`
	187
	188	# REPLACE ":" BY " " IN COMPILER- CPP- OR LINKER-OPTIONS,
	189	# "::" IS REPLACED BY ":".
	190	#value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
	191
	192
	193	# VALUE FROM THE CONFIGURATION-FILE IS ASSIGNED TO THE
	194	# ENVIRONMENT-VARIABLE, BUT ONLY IF NO VALUE HAS BEEN ALREADY
	195	# ASSIGNED WITHIN THIS SCRIPT (E.G. BY SCRIPT-OPTIONS).
	196	# NON-ASSIGNED VARIABLES HAVE VALUE "" OR 0 (IN CASE OF INTEGER).
	197	# HENCE THE GENERAL RULE IS: SCRIPT-OPTION OVERWRITES THE
	198	# CONFIGURATION-FILE.
	199	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
	200	then
	201	eval export $var="\$value"
	202
	203	# TERMINAL OUTPUT OF ENVIRONMENT-VARIABLES, IF TRACEBACK IS SWITCHED on
	204	if [[ $do_trace = true ]]
	205	then
	206	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
	207	fi
	208	fi
	209
	210	else
	211
	212	# SKIP ALL OTHER LINES
	213	continue
	214
	215	fi
	216
	217	done < $config_file
	218
	219
[2404]	220	# CHECK, IF THE BASE DIRECTORY PATH HAS BEEN GIVEN
	221	if [[ "$base_directory" = "" ]]
	222	then
	223	printf "\n +++ no base directory found in configuration file"
	224	locat=config_file; exit
	225	else
	226	if [[ ! -d $base_directory ]]
	227	then
	228	printf "\n\n +++ base directory \"$base_directory\" "
	229	printf "\n does not exist"
	230	locat=source_path; exit
	231	fi
	232	fi
	233
	234
[2380]	235	# CHECK SOURCE-CODE PATH
	236	if [[ "$source_path" = "" ]]
	237	then
	238	printf "\n +++ no source path found in configuration file"
	239	locat=config_file; exit
	240	else
	241	if [[ ! -d $source_path ]]
	242	then
	243	printf "\n\n +++ source path \"$source_path\" "
	244	printf "\n does not exist"
	245	locat=source_path; exit
	246	fi
	247	fi
	248
	249
	250	# CHECK MAKEFILE
	251	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
	252	if [[ ! -f $makefile ]]
	253	then
	254	printf "\n +++ makefile: "
	255	printf "\n $makefile"
	256	printf "\n does not exist"
	257	locat=makefile; exit
	258	fi
	259
	260
	261	# CHECK COMPILERNAME
	262	if [[ "$compiler_name" = "" ]]
	263	then
	264	printf "\n +++ no compiler name found in configuration file"
	265	locat=config_file; exit
	266	fi
	267
	268
	269	# CHECK SERIAL COMPILERNAME
	270	if [[ "$compiler_name_ser" = "" ]]
	271	then
	272	printf "\n +++ no compiler name for serial compilation in configuration file"
	273	locat=config_file; exit
	274	fi
	275
	276
	277	# DETERMINE SSH-KEY TO BE USED
	278	if [[ "$ssh_key" != "" ]]
	279	then
	280	ssh_key="-i $HOME/.ssh/`echo $line \| cut -d" " -s -f2`"
	281	fi
	282
	283
	284	#CHECK CPP-OPTIONS
	285	if [[ "$cpp_options" = "" ]]
	286	then
	287	printf "\n +++ WARNING: no cpp-options found in configuration file"
	288	fi
	289
	290
	291	# CHECK SETTINGS IN CASE OF COMPILING ON REMOTE MACHINE
	292	if [[ "$remote_ip" != "" ]]
	293	then
	294
	295	if [[ "$remote_username" = "" ]]
	296	then
	297	printf "\n +++ no user name given in configuration file"
	298	locat=config_file; exit
	299	fi
	300
	301	# GET SOURCE AND DEPOSITORY PATH ON THE REMOTE MACHINE WITHOUT EVALUATING
	302	# THE $
	303	# IF NOT GIVEN, USE THE LOCAL SOURCE AND DEPOSITORY PATH
	304	line=`grep %remote_source_path $config_file`
	305	if [[ "$line" != "" ]]
	306	then
	307	remote_source_path=`echo $line \| cut -d" " -s -f2`
	308	else
	309	line=`grep %source_path $config_file`
	310	remote_source_path=`echo $line \| cut -d" " -s -f2`
	311	fi
	312
[2404]	313	line=`grep %base_directory $config_file`
[2506]	314	make_depository=`echo $line \| cut -d" " -s -f2`/MAKE_DEPOSITORY_${host_configuration}
[2380]	315
	316	else
	317
[2506]	318	make_depository=${base_directory}/MAKE_DEPOSITORY_${host_configuration}
[2380]	319
	320	fi
	321
	322	# HEADER-OUTPUT (PART1: MESSAGES CONCERNING THE LOCAL HOST)
	323	if [[ $silent = false ]]
	324	then
[2566]	325	calltime=$(date)
	326	printf "\n"
	327	printf "#------------------------------------------------------------------------# \n"
	328	printf "\| %-40s%30s \| \n" "$version" "$calltime"
	329	printf "\| \| \n"
	330	printf "\| %-13s%-57s \| \n" "called on:" "$(hostname) (IP:$local_ip)"
	331	column2=$(echo $config_file \| cut -c1-57 )
	332	printf "\| %-13s%-57s \| \n" "config file:" "$column2"
	333	line=$(echo "$config_file" \| cut -c58-)
	334	while [[ "$line" != "" ]]
[2380]	335	do
[2566]	336	column1=""
	337	column2=$(echo $line \| cut -c1-57 )
	338	printf "\| %-13s%-57s \| \n" "$column1" "$column2"
	339	line=$(echo "$line" \| cut -c58-)
[2380]	340	done
[2566]	341	column2=$(echo $makefile \| cut -c1-57 )
	342	printf "\| %-13s%-57s \| \n" "makefile:" "$column2"
	343	line=$(echo "$makefile" \| cut -c58-)
	344	while [[ "$line" != "" ]]
	345	do
	346	column1=""
	347	column2=$(echo $line \| cut -c1-57 )
	348	printf "\| %-13s%-57s \| \n" "$column1" "$column2"
	349	line=$(echo "$line" \| cut -c58-)
	350	done
	351	column2=$(echo $source_path \| cut -c1-57 )
	352	printf "\| %-13s%-57s \| \n" "source path:" "$column2"
	353	line=$(echo "$source_path" \| cut -c58-)
	354	while [[ "$line" != "" ]]
	355	do
	356	column1=""
	357	column2=$(echo $line \| cut -c1-57 )
	358	printf "\| %-13s%-57s \| \n" "$column1" "$column2"
	359	line=$(echo "$line" \| cut -c58-)
	360	done
	361	printf "\| \| \n"
	362
[2380]	363	if [[ "$remote_ip" != "" ]]
	364	then
[2506]	365	column2="$host_configuration"
[2566]	366	printf "\| %-20s%-50s \| \n" "host configuration:" "$column2"
[2404]	367	column2=$(echo "$make_depository" \| cut -c1-50 )
[2380]	368	printf "\| %-20s%-50s \| \n" "remote depository:" "$column2"
	369	else
[2506]	370	column2="$host_configuration"
[2420]	371	printf "\| %-20s%-50s \| \n" "host identifier:" "$column2"
[2404]	372	column2=$(echo "$make_depository" \| cut -c1-50 )
[2380]	373	printf "\| %-20s%-50s \| \n" "local depository:" "$column2"
	374	fi
[2404]	375	line=$(echo "$make_depository" \| cut -c51-)
	376	while [[ "$line" != "" ]]
	377	do
	378	column1=""
	379	column2=$(echo "$line" \| cut -c1-50 )
	380	printf "\| %-20s%-50s \| \n" "$column1" "$column2"
	381	line=$(echo "$line" \| cut -c51-)
	382	done
[2566]	383
[2380]	384	if [[ "$remote_ip" != "" ]]
	385	then
	386	printf "\| %-20s%-50s \| \n" "remote username:" "$remote_username"
	387	printf "\| %-20s%-50s \| \n" "remote address:" "$remote_ip"
	388	else
	389	printf "\| %-20s%-50s \| \n" "username:" "$local_username"
	390	printf "\| %-20s%-50s \| \n" "address:" "$local_ip"
	391	fi
[2566]	392
[2380]	393	printf "\| %-20s%-50s \| \n" "compiler:" "$compiler_name"
	394	printf "\| %-20s%-50s \| \n" "serial compiler:" "$compiler_name_ser"
[2566]	395
[2380]	396	if [[ "$make_options" != "" ]]
	397	then
	398	printf "\| %-20s%-50s \| \n" "make options:" "$make_options"
	399	fi
	400	column2=$(echo "$cpp_options" \| cut -c1-50 )
	401	printf "\| %-20s%-50s \| \n" "cpp options:" "$column2"
	402	line=$(echo "$cpp_options" \| cut -c51-)
	403	while [[ "$line" != "" ]]
	404	do
	405	column1=""
	406	column2=$(echo "$line" \| cut -c1-50 )
	407	printf "\| %-20s%-50s \| \n" "$column1" "$column2"
	408	line=$(echo "$line" \| cut -c51-)
	409	done
	410	column2=$(echo "$compiler_options" \| cut -c1-50 )
	411	printf "\| %-20s%-50s \| \n" "compiler options:" "$column2"
	412	line=$(echo "$compiler_options" \| cut -c51-)
	413	while [[ "$line" != "" ]]
	414	do
	415	column1=""
	416	column2=$(echo "$line" \| cut -c1-50 )
	417	printf "\| %-20s%-50s \| \n" "$column1" "$column2"
	418	line=$(echo "$line" \| cut -c51-)
	419	done
[2388]	420	column2=$(echo "$linker_options" \| cut -c1-50 )
	421	printf "\| %-20s%-50s \| \n" "linker options:" "$column2"
	422	line=$(echo "$linker_options" \| cut -c51-)
[2380]	423	while [[ "$line" != "" ]]
	424	do
	425	column1=""
	426	column2=$(echo "$line" \| cut -c1-50 )
	427	printf "\| %-20s%-50s \| \n" "$column1" "$column2"
	428	line=$(echo "$line" \| cut -c51-)
	429	done
	430	if [[ "$login_init_cmd" != "" ]]
	431	then
	432	column2=$(echo "$login_init_cmd" \| cut -c1-50 )
	433	printf "\| %-20s%-50s \| \n" "login init command:" "$column2"
	434	line=$(echo "$login_init_cmd" \| cut -c51-)
	435	while [[ "$line" != "" ]]
	436	do
	437	column1=""
	438	column2=$(echo "$line" \| cut -c1-50 )
	439	printf "\| %-20s%-50s \| \n" "$column1" "$column2"
	440	line=$(echo "$line" \| cut -c51-)
	441	done
	442	fi
	443	if [[ "$module_commands" != "" ]]
	444	then
	445	column2=$(echo "$module_commands" \| cut -c1-50 )
	446	printf "\| %-20s%-50s \| \n" "module command(s):" "$column2"
	447	line=$(echo "$module_commands" \| cut -c51-)
	448	while [[ "$line" != "" ]]
	449	do
	450	column1=""
	451	column2=$(echo "$line" \| cut -c1-50 )
	452	printf "\| %-20s%-50s \| \n" "$column1" "$column2"
	453	line=$(echo "$line" \| cut -c51-)
	454	done
	455	fi
	456	printf "#------------------------------------------------------------------------# \n"
	457
[2566]	458	answer=dummy
	459	printf "\n"
	460	while [[ "$answer" != y && "$answer" != Y && "$answer" != c && "$answer" != C && "$answer" != s && "$answer" != S && "$answer" != a && "$answer" != A ]]
	461	do
	462	printf " >>> continue (y(es)/c(ontinue)/a(bort)) ? "
	463	read answer
	464	done
	465	if [[ $answer = a \|\| $answer = A ]]
[2380]	466	then
[2566]	467	locat=user_abort; exit
[2380]	468	fi
[2566]	469	if [[ $answer = c \|\| $answer = C ]]
	470	then
	471	silent=true
	472	fi
	473	fi
[2380]	474
	475
[2566]	476	# TAR THE SOURCES AND MAKEFILES
	477	# UTILITIES ARE TEMPORARILY COPIED TO THE SOURCE DIRECTORY IN ORDER TO TAR
	478	# THEM TOO
	479	if [[ $silent = false ]]
	480	then
	481	printf "\n\n *** tar of makefile and source files in"
	482	printf "\n $source_path\n"
	483	fi
	484	cd $source_path
	485	cp -p ../UTIL/combine_plot_fields.f90 .
	486	cp -p ../UTIL/compare_palm_logs.f90 .
[3208]	487	cp -p ../UTIL/agent_preprocessing/agent_preprocessing.f90 .
[2566]	488	cp -p ../UTIL/Makefile_utilities .
	489	tar -cf ${program_name}_sources.tar Makefile* *.$suf
[3208]	490	rm combine_plot_fields.f90 compare_palm_logs.f90 agent_preprocessing.f90 Makefile_utilities
[2566]	491
	492
	493	# MAKE ON REMOTE HOST
	494	if [[ "$remote_ip" != "" ]]
	495	then
	496
	497	# NEXT IS THE BRANCH FOR CREATING THE MAKE_DEPOSITORY_...
[2834]	498	if [[ "$jobname" = "" ]]
[2380]	499	then
	500
[2566]	501	# COPY CURRENT SOURCE CODE TO SOURCE-CODE DIRECTORY ON THE REMOTE HOST
	502	# CREATE THIS DIRECTORY, IF IT DOES NOT EXIST
	503	if [[ $silent = false ]]
[2380]	504	then
[2566]	505	echo " "
[2404]	506	echo " *** copying \"${program_name}_sources.tar\" to \"${remote_ip}:${make_depository}/\" "
	507	echo "[[ ! -d ${make_depository} ]] && (echo \" *** ${make_depository} will be created\"; mkdir -p ${make_depository})" \| ssh -q $ssh_key ${remote_username}@${remote_ip} 2>&1
	508	scp $ssh_key ${source_path}/${program_name}_sources.tar ${remote_username}@${remote_ip}:${make_depository}/${program_name}_sources.tar
[2566]	509	else
	510	echo "[[ ! -d ${make_depository} ]] && mkdir -p ${make_depository}" \| ssh -q $ssh_key ${remote_username}@${remote_ip} 2>&1
	511	scp $ssh_key ${source_path}/${program_name}_sources.tar ${remote_username}@${remote_ip}:${make_depository}/${program_name}_sources.tar > /dev/null
	512	fi
[2380]	513
	514
	515
[2566]	516
	517	# UNTAR PREVIOUS UPDATE ON REMOTE HOST, IF EXISTING
	518	if [[ $silent = false ]]
	519	then
[2380]	520	echo " *** untar previous update on remote host, if existing"
[2566]	521	fi
	522	echo "cd ${make_depository}; [[ -f ${program_name}_current_version.tar ]] && tar -xf ${program_name}_current_version.tar" \| ssh -q $ssh_key ${remote_username}@${remote_ip} 2>&1
[2380]	523
	524
[2566]	525	# UNTAR CURRENT SOURCES ON REMOTE HOST
	526	if [[ $silent = false ]]
	527	then
[2380]	528	echo " *** untar current sources on remote host"
[2566]	529	fi
	530	echo "cd ${make_depository}; tar -xf ${program_name}_sources.tar" \| ssh -q $ssh_key ${remote_username}@${remote_ip} 2>&1
[2380]	531
	532
[2566]	533	# CREATE INIT AND MODULE COAMMNDS
	534	[[ "$login_init_cmd" != "" ]] && login_init_cmd=${login_init_cmd}";"
	535	[[ "$module_commands" != "" ]] && module_commands=${module_commands}";"
[2380]	536
	537
[2566]	538	# FIRST CREATE EXECUTABLES FOR THE UTILITY ROUTINES
	539	if [[ $silent = false ]]
	540	then
[2380]	541	echo " "
	542	echo " *** creating utilities on remote host"
[2566]	543	fi
	544	make_call_string="make -f Makefile_utilities $make_options F90=$compiler_name F90_SER=$compiler_name_ser COPT=\"$cpp_options\" F90FLAGS=\"$compiler_options\" LDFLAGS=\"$linker_options\" "
	545	echo "$login_init_cmd $module_commands cd ${make_depository}; echo $make_call_string > LAST_MAKE_CALL; chmod u+x LAST_MAKE_CALL; $make_call_string; [[ \$? != 0 ]] && echo MAKE_ERROR" \| ssh -q $ssh_key ${remote_username}@${remote_ip} 2>&1 \| tee ${host_configuration}_last_make_protocol
[2380]	546
[2566]	547	if [[ $(grep -c MAKE_ERROR ${host_configuration}_last_make_protocol) != 0 ]]
	548	then
	549	printf "\a\n +++ error(s) occurred during compiling or linking of utilities"
	550	printf "\n for host configuration \"$host_configuration\" "
	551	if [[ $silent = false ]]
[2380]	552	then
[2566]	553	answer=dummy
	554	printf "\n"
	555	while [[ "$answer" != c && "$answer" != k ]]
	556	do
	557	printf " >>> continue / list errors / kill palmbuild (c/l/k) ? "
	558	read answer
	559	if [[ "$answer" = l ]]
[2380]	560	then
[2566]	561	more ${host_configuration}_last_make_protocol
[2380]	562	fi
[2566]	563	done
	564	if [[ $answer = k ]]
	565	then
[2487]	566	locat=user_abort; exit
[2380]	567	fi
[2566]	568	else
	569	# ABORT ANYWAY
	570	locat=user_abort; exit
[2380]	571	fi
[2566]	572	fi
[2380]	573
[2566]	574	# NOW COMPILE THE PALM CODE
	575	# COMMANDS WILL BE COMMUNICATED TO SSH VIA PIPE, SINCE THIS WAY THE SYSTEM- AND
	576	# USER-PROFILES OF THE SHELL ARE COMPLETELY EXECUTED (OTHERWISE, MAKE
	577	# MAY E.G. MISS THE COMPILER-PATHS)
	578	if [[ $silent = false ]]
	579	then
[2380]	580	echo " "
	581	echo " *** compile PALM sources on remote host"
[2566]	582	fi
	583	make_call_string="make $make_options PROG=$program_name F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$compiler_options\" LDFLAGS=\"$linker_options\" "
	584	echo "$login_init_cmd $module_commands cd ${make_depository}; echo $make_call_string > LAST_MAKE_CALL; chmod u+x LAST_MAKE_CALL; $make_call_string; [[ \$? != 0 ]] && echo MAKE_ERROR" \| ssh -q $ssh_key ${remote_username}@${remote_ip} 2>&1 \| tee ${host_configuration}_last_make_protocol
[2380]	585
[2566]	586	if [[ $(grep -c MAKE_ERROR ${host_configuration}_last_make_protocol) != 0 ]]
	587	then
	588	printf "\a\n +++ error(s) occurred during compiling or linking for host configuration \"$host_configuration\" "
	589	if [[ $silent = false ]]
[2380]	590	then
[2566]	591	answer=dummy
	592	printf "\n"
	593	while [[ "$answer" != c && "$answer" != k ]]
	594	do
	595	printf " >>> continue / list errors / kill palmbuild (c/l/k) ? "
	596	read answer
	597	if [[ "$answer" = l ]]
[2380]	598	then
[2566]	599	more ${host_configuration}_last_make_protocol
[2380]	600	fi
[2566]	601	done
	602	if [[ $answer = k ]]
	603	then
[2487]	604	locat=user_abort; exit
[2380]	605	fi
[2566]	606	else
	607	# ABORT ANYWAY
	608	locat=user_abort; exit
[2380]	609	fi
[2566]	610	fi
[2380]	611
[2566]	612	# TAR UPDATED VERSION ON THE REMOTE HOST
	613	if [[ $silent = false ]]
	614	then
[2380]	615	printf "\n *** tar update on remote host ..."
[2566]	616	fi
	617	echo "cd ${make_depository}; chmod u+w ; tar -cf ${program_name}_current_version.tar ${program_name} .f90 .o .mod *.x" \| ssh -q $ssh_key ${remote_username}@${remote_ip} 2>&1
[2380]	618
	619
[2566]	620	# NOW COMES THE BRANCH FOR CREATING THE EXECUTABLE FOR THE CURRENT RUN
	621	# INCLUDING E.G. USER-INTERFACE ROUTINES. ALSO ADD OTHER UTILITY EXECUTABLES. EVERYTHING IS
	622	# COLLECTED IN DIRECTORY SOURCES_FOR_RUN_...
[2834]	623	elif [[ "$jobname" != "" ]]
[2566]	624	then
	625
	626	# FIRST CHECK, IF COMPILED SOURCES FOR THIS RUN IDENTIFIER EXISTS
	627	# AND ASK, IF THEY SHALL BE USED
	628	echo "[[ -d ${fast_io_catalog}/${sources_for_run_catalog} ]] && echo sources for run found" \| ssh -q $ssh_key ${remote_username}@${remote_ip} 2>&1 > ${host_configuration}_last_make_protocol
	629	if [[ $(grep -c "sources for run found" ${host_configuration}_last_make_protocol) != 0 && $use_existing_sources_folder = true ]]
[2380]	630	then
[2834]	631	printf "\a\n *** compiled sources for run \"$jobname\" found on remote host in folder"
[2566]	632	printf "\n ${fast_io_catalog}/${sources_for_run_catalog}"
	633	printf "\n will be used!"
	634	exit
	635	fi
[2380]	636
[2566]	637	# COPY MAKE DEPOSITORY ON REMOTE MACHINE TO SOURCES_FOR_RUN_...
	638	if [[ $silent = false ]]
	639	then
[2506]	640	printf "\n *** copy MAKE_DEPOSITORY_${host_configuration} on remote host to $sources_for_run_catalog \n"
[2566]	641	fi
	642	echo "rm -rf ${fast_io_catalog}/${sources_for_run_catalog}; mkdir -p ${fast_io_catalog}/${sources_for_run_catalog}; cp ${make_depository}/${program_name}_current_version.tar ${fast_io_catalog}/${sources_for_run_catalog}; cd ${fast_io_catalog}/${sources_for_run_catalog}; tar xf ${program_name}_current_version.tar" \| ssh -q $ssh_key ${remote_username}@${remote_ip} 2>&1
[2380]	643
	644
[2566]	645	# COPY CONTENTS OF SOURCES_FOR_RUN_... TO SOURCES_FOR_RUN_... ON THE REMOTE MACHINE
	646	if [[ $silent = false ]]
	647	then
[2506]	648	printf "\n *** copy ${base_directory}/${sources_for_run_catalog}"
	649	printf "\n to $sources_for_run_catalog on remote host \n"
[2566]	650	fi
	651	scp -q $ssh_key ${base_directory}/${sources_for_run_catalog}/{,.[!.]} ${remote_username}@${remote_ip}:${fast_io_catalog}/${sources_for_run_catalog}
[2380]	652
	653
[2566]	654	# CREATE EXECUTABLE FROM THE NEW/MODIFIED SOURCE FILES, IF THERE ARE ANY
	655	if [[ $(ls -1 ${base_directory}/${sources_for_run_catalog}/ \| grep -c .$suf) != 0 ]]
	656	then
	657
	658	make_call_string="make $make_options PROG=$program_name F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$compiler_options\" LDFLAGS=\"$linker_options\" "
	659	[[ "$login_init_cmd" != "" ]] && login_init_cmd=${login_init_cmd}";"
	660	[[ "$module_commands" != "" ]] && module_commands=${module_commands}";"
	661	if [[ $silent = false ]]
[2380]	662	then
	663	echo " *** execute \"make\" on remote host"
[2566]	664	fi
	665	echo "$login_init_cmd $module_commands cd ${fast_io_catalog}/${sources_for_run_catalog}; echo $make_call_string > LAST_MAKE_CALL; chmod u+x LAST_MAKE_CALL; $make_call_string; [[ \$? != 0 ]] && echo MAKE_ERROR" \| ssh -q $ssh_key ${remote_username}@${remote_ip} 2>&1 \| tee ${host_configuration}_last_make_protocol
[2380]	666
[2566]	667	if [[ $(grep -c MAKE_ERROR ${host_configuration}_last_make_protocol) != 0 ]]
	668	then
	669	printf "\a\n +++ error(s) occurred during compiling or linking for host configuration \"$host_configuration\" "
	670	if [[ $silent = false ]]
[2380]	671	then
[2566]	672	answer=dummy
	673	printf "\n"
	674	while [[ "$answer" != c && "$answer" != k ]]
	675	do
	676	printf " >>> continue / list errors / kill palmbuild (c/l/k) ? "
	677	read answer
	678	if [[ "$answer" = l ]]
[2380]	679	then
[2566]	680	more ${host_configuration}_last_make_protocol
[2380]	681	fi
[2566]	682	done
	683	if [[ $answer = k ]]
	684	then
[2506]	685	echo "rm -rf ${fast_io_catalog}/${sources_for_run_catalog}" \| ssh -q $ssh_key ${remote_username}@${remote_ip} 2>&1
[2487]	686	locat=user_abort; exit
[2380]	687	fi
[2566]	688	else
	689	# ABORT ANYWAY
	690	echo "rm -rf ${fast_io_catalog}/${sources_for_run_catalog}" \| ssh -q $ssh_key ${remote_username}@${remote_ip} 2>&1
	691	locat=user_abort; exit
[2380]	692	fi
[2566]	693	fi
[2380]	694
[2566]	695	else
[2380]	696
[2566]	697	echo " *** nothing to compile for this run"
[2380]	698
	699	fi
	700
[2566]	701	fi
[2380]	702
[2566]	703	rm -rf ${source_path}/${host_configuration}_last_make_protocol
[2380]	704
	705
[2566]	706	# MAKE ON LOCAL HOST
	707	else
[2380]	708
[2566]	709
	710	# NEXT IS THE BRANCH FOR CREATING THE MAKE_DEPOSITORY_... ON THE
	711	# LOCAL HOST
[2834]	712	if [[ "$jobname" = "" ]]
[2566]	713	then
	714
	715	# SET THE ENVIRONMENT (EXECUTE INIT AND MODULE COMMANDS)
	716	if [[ "$login_init_cmd" != "" ]]
[2380]	717	then
[2566]	718	$login_init_cmd
	719	fi
[2380]	720
[2566]	721	if [[ "$module_commands" != "" ]]
	722	then
	723	$module_commands
	724	fi
[2380]	725
	726
[2566]	727	# CREATE MAKE-DEPOSITORY, IF IT DOES NOT EXIST
	728	eval make_depository=$make_depository
	729	if [[ ! -d $make_depository ]]
	730	then
	731	if mkdir -p $make_depository
[2380]	732	then
[2566]	733	if [[ $silent = false ]]
[2380]	734	then
	735	printf "\n\n *** directory for local make depository:"
[2404]	736	printf "\n $make_depository"
[2380]	737	printf "\n was created\n"
	738	fi
[2566]	739	else
	740	printf "\n +++ directory for local make depository:"
	741	printf "\n $make_depository"
	742	printf "\n cannot be created"
	743	locat=local_depository; exit
[2380]	744	fi
[2566]	745	fi
[2380]	746
[2566]	747	# COPY SOURCE-CODE FROM REPOSITORY TO MAKE-DEPOSITORY
	748	if [[ $silent = false ]]
	749	then
[2380]	750	echo " "
	751	echo " *** untar current source sources on local host in"
[2404]	752	echo " $make_depository"
[2566]	753	fi
	754	cd $make_depository
	755	cp $source_path/${program_name}_sources.tar .
	756	tar xf ${program_name}_sources.tar
[2380]	757
	758
[2566]	759	# FIRST CREATE EXECUTABLES FOR THE UTILITY ROUTINES
	760	if [[ $silent = false ]]
	761	then
[2380]	762	echo " "
	763	echo " *** creating utilities on local host"
[2566]	764	fi
	765	make -f Makefile_utilities $make_options F90=$compiler_name F90_SER=$compiler_name_ser COPT="$cpp_options" F90FLAGS="$compiler_options" LDFLAGS="$linker_options"
[3208]	766	mv agent_preprocessing $source_path/../SCRIPTS/.
[2380]	767
	768
[2566]	769	# CALL MAKE ON LOCAL HOST USING THE OPTIONS DETERMINED FURTHER ABOVE
	770	if [[ $silent = false ]]
	771	then
[2380]	772	echo " "
	773	echo " *** compile PALM sources on local host"
[2566]	774	fi
[2380]	775
[2566]	776	make $make_options PROG=$program_name F90=$compiler_name COPT="$cpp_options" F90FLAGS="$compiler_options" LDFLAGS="$linker_options" 2>&1 \| tee ${host_configuration}_last_make_protocol
[2380]	777
[2566]	778	if [[ $? != 0 ]]
	779	then
	780	printf "\a\n +++ error(s) occurred during compiling or linking for host configuration \"$host_configuration\" "
	781	if [[ $silent = false ]]
[2380]	782	then
[2566]	783	answer=dummy
	784	printf "\n"
	785	while [[ "$answer" != c && "$answer" != k ]]
	786	do
	787	printf " >>> continue / list errors / kill palmbuild (c/l/k) ? "
	788	read answer
	789	if [[ "$answer" = l ]]
[2380]	790	then
[2566]	791	more ${host_configuration}_last_make_protocol
[2380]	792	fi
[2566]	793	done
	794	if [[ $answer = k ]]
	795	then
[2487]	796	locat=user_abort; exit
[2380]	797	fi
[2566]	798	else
	799	# ABORT ANYWAY
	800	locat=user_abort; exit
[2380]	801	fi
[2566]	802	fi
[2380]	803
	804
[2566]	805	# TAR NEW VERSION ON LOCAL HOST
	806	if [[ $silent = false ]]
	807	then
[2380]	808	printf "\n *** tar update on local host ..."
[2566]	809	fi
	810	tar -cf ${program_name}_current_version.tar ${program_name} .$suf .o .mod .x
[2380]	811
[2566]	812	else
[2380]	813
[2566]	814	# NOW COMES THE BRANCH FOR CREATING THE EXECUTABLE FOR THE CURRENT RUN
	815	# INCLUDING E.G. USER-INTERFACE ROUTINES. ALSO ADD OTHER UTILITY EXECUTABLES. EVERYTHING IS
	816	# COLLECTED IN DIRECTORY SOURCES_FOR_RUN_...
[2380]	817
[2566]	818	# FIRST CHECK, IF COMPILED SOURCES FOR THIS RUN IDENTIFIER EXISTS
	819	# AND ASK, IF THEY SHALL BE USED
	820	if [[ -d ${fast_io_catalog}/${sources_for_run_catalog} && $use_existing_sources_folder = true ]]
	821	then
[2834]	822	printf "\a\n *** compiled sources for run \"$jobname\" found on local host in folder"
[2566]	823	printf "\n ${fast_io_catalog}/${sources_for_run_catalog}"
	824	printf "\n will be used!"
	825	exit
	826	fi
[2489]	827
[2566]	828	# SECOND CHECK, IF A DEPOSITORY EXISTS ON THE LOCAL MACHINE
	829	if [[ ! -d ${make_depository} ]]
	830	then
	831	printf "\n +++ directory for local make depository:"
	832	printf "\n $make_depository"
	833	printf "\n not found. Please run \"palmbuild -h $host_configuration\" "
	834	locat=make_depository; exit
	835	fi
[2380]	836
	837
[2566]	838	# COPY MAKE DEPOSITORY ON LOCAL MACHINE TO SOURCES_FOR_RUN_...
	839	if [[ $silent = false ]]
	840	then
[2506]	841	printf "\n *** copy MAKE_DEPOSITORY_${host_configuration} on local host to "
	842	printf "\n ${fast_io_catalog}/${sources_for_run_catalog} \n"
[2566]	843	fi
	844	rm -rf ${fast_io_catalog}/${sources_for_run_catalog}
	845	mkdir -p ${fast_io_catalog}/${sources_for_run_catalog}
	846	cp ${make_depository}/${program_name}_current_version.tar ${fast_io_catalog}/${sources_for_run_catalog}
	847	cd $fast_io_catalog/${sources_for_run_catalog}
	848	tar xf ${program_name}_current_version.tar
[2380]	849
	850
[2566]	851	# COPY CONTENTS OF SOURCES_FOR_RUN_... TO SOURCES_FOR_RUN_...
	852	# IN THE FAST_IO_CATALOG ON THE LOCAL MACHINE
	853	if [[ $silent = false ]]
	854	then
[2506]	855	printf "\n *** copy ${base_directory}/${sources_for_run_catalog} to"
	856	printf "\n ${fast_io_catalog}/${sources_for_run_catalog} on local host \n"
[2566]	857	fi
	858	cp ${base_directory}/${sources_for_run_catalog}/{,.[!.]} ${fast_io_catalog}/${sources_for_run_catalog}
[2380]	859
	860
[2566]	861	# CREATE EXECUTABLE FROM THE NEW/MODIFIED SOURCE FILES, IF THERE ARE ANY
	862	if [[ $(ls -1 ${base_directory}/${sources_for_run_catalog}/ \| grep -c .$suf) != 0 ]]
	863	then
	864
	865	if [[ $silent = false ]]
[2380]	866	then
	867	echo " *** execute \"make\" on local host"
[2566]	868	fi
	869	[[ "$login_init_cmd" != "" ]] && $login_init_cmd
	870	[[ "$module_commands" != "" ]] && $module_commands
[2380]	871
[2566]	872	make $make_options PROG=$program_name F90=$compiler_name COPT="$cpp_options" F90FLAGS="$compiler_options" LDFLAGS="$linker_options"
[2380]	873
[2566]	874	if [[ $? != 0 ]]
	875	then
	876
	877	printf "\a\n +++ error(s) occurred during compiling or linking for host configuration \"$host_configuration\" "
	878	if [[ $silent = false ]]
[2380]	879	then
[2566]	880	answer=dummy
	881	printf "\n"
	882	while [[ "$answer" != c && "$answer" != k ]]
	883	do
	884	printf " >>> continue / kill palmbuild (c/k) ? "
	885	read answer
	886	done
	887	if [[ $answer = k ]]
[2380]	888	then
[2506]	889	rm -rf ${fast_io_catalog}/${sources_for_run_catalog}
[2487]	890	locat=user_abort; exit
[2380]	891	fi
[2566]	892	else
	893	# ABORT ANYWAY
	894	rm -rf ${fast_io_catalog}/${sources_for_run_catalog}
	895	locat=user_abort; exit
[2380]	896	fi
[2566]	897	fi
[2380]	898
[2566]	899	else
[2380]	900
[2566]	901	echo " *** nothing to compile for this run"
[2380]	902
[2566]	903	fi
[2380]	904
	905	fi
[2566]	906	fi

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