[1611] | 1 | #!/usr/bin/python |
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| 2 | # -*- coding: utf-8 -*- |
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| 3 | #--------------------------------------------------------------------------------# |
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[2696] | 4 | # This file is part of the PALM model system. |
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[1611] | 5 | # |
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| 6 | # PALM is free software: you can redistribute it and/or modify it under the terms |
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| 7 | # of the GNU General Public License as published by the Free Software Foundation, |
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| 8 | # either version 3 of the License, or (at your option) any later version. |
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| 9 | # |
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| 10 | # PALM is distributed in the hope that it will be useful, but WITHOUT ANY |
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| 11 | # WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR |
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| 12 | # A PARTICULAR PURPOSE. See the GNU General Public License for more details. |
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| 13 | # |
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| 14 | # You should have received a copy of the GNU General Public License along with |
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| 15 | # PALM. If not, see <http://www.gnu.org/licenses/>. |
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| 16 | # |
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[2718] | 17 | # Copyright 1997-2018 Leibniz Universitaet Hannover |
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[1611] | 18 | #--------------------------------------------------------------------------------# |
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| 19 | # |
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| 20 | # Current revisions: |
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| 21 | # ----------------- |
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| 22 | # |
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[2416] | 23 | # |
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[1611] | 24 | # Former revisions: |
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| 25 | # ----------------- |
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| 26 | # $Id: palm_wdd 2718 2018-01-02 08:49:38Z suehring $ |
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[2716] | 27 | # Corrected "Former revisions" section |
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| 28 | # |
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| 29 | # 2696 2017-12-14 17:12:51Z kanani |
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| 30 | # Change in file header (GPL part) |
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| 31 | # |
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| 32 | # 2421 2017-09-07 10:36:34Z maronga |
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[2421] | 33 | # Fixed display of job progress. |
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| 34 | # |
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| 35 | # 2416 2017-09-06 14:28:14Z maronga |
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[2416] | 36 | # Adapted for palmrun |
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| 37 | # |
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| 38 | # 1619 2015-07-13 06:53:19Z maronga |
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[1611] | 39 | # |
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[1619] | 40 | # 1618 2015-07-13 06:52:15Z maronga |
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| 41 | # Added steering via configuration file, to be placed in the home directory of the |
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| 42 | # remote host to be monitored. |
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| 43 | # |
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[1614] | 44 | # 1613 2015-07-08 14:53:29Z maronga |
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| 45 | # Bugfix: tooltip for queuing name did not show up on first update. |
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| 46 | # New: added contect menu for showing the parameter file and the run control |
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| 47 | # output |
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| 48 | # |
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[1612] | 49 | # 1611 2015-07-07 12:23:22Z maronga |
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| 50 | # Initial revision |
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| 51 | # |
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[1611] | 52 | # |
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| 53 | # Description: |
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| 54 | # ------------ |
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| 55 | # PALM watchdog client for monitoring batch jobs on a variety of hosts specified |
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| 56 | # by the user. The watchdog server requires python 2.7 or higher installed on |
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| 57 | # host to be monitored. |
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| 58 | # |
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| 59 | # Instructions: |
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| 60 | # ------------- |
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| 61 | # 1) Modify the header section of palm_wd |
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| 62 | # 2) Move .wd.olddata and .wd.newdata to your palm directory |
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| 63 | # (e.g. /home/user/current_version/.wd.newdata etc.) |
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| 64 | # 3) Modify a copy of palm_wdd for each host to be monitored and move it to the |
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| 65 | # respective hosts |
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| 66 | # 4) Start the client either from mrungui or from shell by "nohup palm_wd&" |
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| 67 | # |
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| 68 | # To do: |
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| 69 | # ------ |
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| 70 | # 1) Add "Options", "Help" and "Manual" |
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| 71 | # 2) Move user settings to a configuration file |
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| 72 | #------------------------------------------------------------------------------! |
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| 73 | |
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[1618] | 74 | import ConfigParser |
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[1611] | 75 | import os |
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[2416] | 76 | import pwd |
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[1618] | 77 | from subprocess import check_output |
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[1611] | 78 | import sys |
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| 79 | |
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[2416] | 80 | |
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[1618] | 81 | # Read configuration file |
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| 82 | # First check if the configuration file exists |
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| 83 | if ( os.path.exists('.wdd.config') == False ): |
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[2416] | 84 | print "Error. No configuration file .wdd.config found." |
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[1618] | 85 | raise SystemExit |
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[1611] | 86 | |
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[1618] | 87 | config = ConfigParser.RawConfigParser() |
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| 88 | config.read('.wdd.config') |
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[1611] | 89 | |
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[1618] | 90 | cmd_readqueue = config.get('Settings', 'readqueue').strip('"') |
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| 91 | cmd_tmpdir = config.get('Settings', 'tmpdir').strip('"') |
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| 92 | cmd_canceljob = config.get('Settings', 'canceljob').strip('"') |
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| 93 | cmd_checkjob = config.get('Settings', 'checkjob').strip('"') |
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| 94 | cmd_realname_grep = config.get('Settings', 'realname_grep').strip('"') |
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| 95 | cmd_starttime = config.get('Settings', 'starttime').strip('"') |
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| 96 | cmd_starttime_grep = config.get('Settings', 'starttime_grep').strip('"') |
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[1611] | 97 | |
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[1618] | 98 | |
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[1611] | 99 | action = str(sys.argv[1]) |
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| 100 | data = str(sys.argv[2]) |
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| 101 | |
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[2416] | 102 | cmd_readqueue = cmd_readqueue + " " + pwd.getpwuid( os.getuid() )[ 0 ] |
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| 103 | cmd_tmpdir = cmd_tmpdir + pwd.getpwuid( os.getuid() )[ 0 ] |
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[1611] | 104 | |
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| 105 | # reading queuing system |
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| 106 | def ReadQueue(username): |
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| 107 | |
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| 108 | # collect queuing information |
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| 109 | try: |
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| 110 | out = check_output(cmd_readqueue, shell=True) |
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| 111 | job_list = out.splitlines() |
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| 112 | out = None |
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| 113 | # do nothing for empty results list |
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| 114 | except: |
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| 115 | job_list = [] |
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| 116 | |
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| 117 | |
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| 118 | job_data_tmp = [] |
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| 119 | for j in range(0,len(job_list)): |
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| 120 | |
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| 121 | # Write temporary data array containing the job information. |
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| 122 | job_data_tmp.append(j) |
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| 123 | job_data_tmp[j] = job_list[j].split(" ") |
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| 124 | job_data_tmp[j] = filter(None, job_data_tmp[j]) |
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| 125 | |
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| 126 | cmd_realname = cmd_checkjob + " " + job_data_tmp[j][0] + "|grep " + cmd_realname_grep |
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| 127 | |
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| 128 | # retrieve real job name for all jobs |
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| 129 | try: |
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| 130 | out = check_output(cmd_realname, shell=True) |
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| 131 | job_realname = out.split(" ")[1].rstrip() |
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| 132 | except: |
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| 133 | job_realname = "error" |
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| 134 | |
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| 135 | |
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| 136 | # for running jobs, determine progress |
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| 137 | if ( job_data_tmp[j][2] == "Running" ): |
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| 138 | |
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| 139 | # collect progress information |
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[2421] | 140 | cmd_progress = "cat " + cmd_tmpdir + "/" + job_realname + "/PROGRESS" |
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[1611] | 141 | try: |
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| 142 | |
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| 143 | devnull = open(os.devnull, 'w') |
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| 144 | out = check_output(cmd_progress, shell=True, stderr=devnull) |
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| 145 | progress_lines = out.splitlines() |
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[2416] | 146 | job_progress = progress_lines[1].split(" ")[3] |
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[1611] | 147 | out = None |
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| 148 | except: |
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| 149 | job_progress = "0" |
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| 150 | |
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| 151 | else: |
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| 152 | job_progress = "0" |
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| 153 | |
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| 154 | # return the job data |
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| 155 | job_starttime = GetStartTime(job_data_tmp[j][0]) |
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| 156 | print job_realname + " " + job_data_tmp[j][0] + " " + job_data_tmp[j][3] + " " + job_data_tmp[j][2] + " " + job_progress + " " + job_data_tmp[j][4] + " " + job_starttime |
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| 157 | |
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| 158 | |
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| 159 | # check details of specific job |
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| 160 | def CheckJob(jobid): |
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| 161 | |
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| 162 | cmd_checkjob_tmp = cmd_checkjob + " " + jobid |
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| 163 | |
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| 164 | try: |
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| 165 | out = check_output(cmd_checkjob_tmp, shell=True) |
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| 166 | job_details = out |
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| 167 | except: |
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| 168 | job_details = "No details available." |
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| 169 | |
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| 170 | return job_details |
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| 171 | |
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| 172 | |
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| 173 | # cancel a specific job |
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| 174 | def CancelJob(jobid): |
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| 175 | |
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| 176 | cmd_canceljob_tmp = cmd_canceljob + " " + jobid |
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| 177 | |
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| 178 | try: |
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| 179 | out = check_output(cmd_canceljob_tmp, shell=True) |
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| 180 | job_canceled = out |
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| 181 | except: |
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| 182 | job_canceled = "Action failed." |
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| 183 | |
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| 184 | return job_canceled |
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| 185 | |
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| 186 | |
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| 187 | # retrieve estimated start time of job |
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| 188 | def GetStartTime(jobid): |
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| 189 | |
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| 190 | cmd_starttime_tmp = cmd_starttime + " " + jobid + "|grep \"" + cmd_starttime_grep + "\"" |
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| 191 | |
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| 192 | try: |
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| 193 | out = check_output(cmd_starttime_tmp, shell=True) |
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| 194 | job_starttime = out.split()[5] |
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| 195 | except: |
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| 196 | job_starttime = "Action failed." |
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| 197 | |
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| 198 | return job_starttime |
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| 199 | |
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| 200 | |
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[2416] | 201 | def DoStopNow(jobid): |
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[1611] | 202 | |
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| 203 | # collect progress information |
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[2416] | 204 | cmd_dostop = "touch " + cmd_tmpdir + "/" + jobid + "/DO_STOP_NOW" |
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[1611] | 205 | try: |
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| 206 | devnull = open(os.devnull, 'w') |
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| 207 | out = check_output(cmd_dostop, shell=True, stderr=devnull) |
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| 208 | out = None |
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| 209 | except: |
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| 210 | return_message = "Action failed." |
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| 211 | return return_message |
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| 212 | |
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[2416] | 213 | def DoRestartNow(jobid): |
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[1611] | 214 | |
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| 215 | # collect progress information |
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[2416] | 216 | cmd_dorestart = "touch " + cmd_tmpdir + "/" + jobid + "/DO_RESTART_NOW" |
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[1611] | 217 | try: |
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| 218 | devnull = open(os.devnull, 'w') |
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| 219 | out = check_output(cmd_dorestart, shell=True, stderr=devnull) |
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| 220 | out = None |
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| 221 | except: |
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| 222 | return_message = "Action failed." |
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| 223 | return return_message |
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| 224 | |
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[2416] | 225 | def GetPARIN(jobid): |
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[1611] | 226 | |
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[1613] | 227 | # collect progress information |
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[2416] | 228 | cmd_dorestart = "cat " + cmd_tmpdir + "/" + jobid + "/PARIN" |
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[1613] | 229 | try: |
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| 230 | devnull = open(os.devnull, 'w') |
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| 231 | out = check_output(cmd_dorestart, shell=True, stderr=devnull) |
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| 232 | return_message = out |
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| 233 | out = None |
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| 234 | except: |
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[2416] | 235 | return_message = "Action failed." + "cat " + cmd_tmpdir + "/" + jobid + "/PARIN" |
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[1613] | 236 | |
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| 237 | return return_message |
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| 238 | |
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[2416] | 239 | def GetRC(jobid): |
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[1613] | 240 | |
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| 241 | # collect progress information |
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[2416] | 242 | cmd_dorestart = "cat " + cmd_tmpdir + "/" + jobid + "/RUN_CONTROL" |
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[1613] | 243 | try: |
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| 244 | devnull = open(os.devnull, 'w') |
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| 245 | out = check_output(cmd_dorestart, shell=True, stderr=devnull) |
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| 246 | return_message = out |
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| 247 | out = None |
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| 248 | except: |
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[2416] | 249 | return_message = "Action failed." |
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[1613] | 250 | |
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| 251 | return return_message |
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| 252 | |
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[1611] | 253 | # START OF MAIN |
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| 254 | if ( action == "queue" ): |
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| 255 | ReadQueue(data) |
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| 256 | elif ( action == "check"): |
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| 257 | print CheckJob(data) |
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| 258 | elif ( action == "cancel"): |
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| 259 | print CancelJob(data) |
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| 260 | elif ( action == "start"): |
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| 261 | print GetStartTime(data) |
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| 262 | elif ( action == "stop"): |
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[2416] | 263 | print DoStopNow(data) |
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[1611] | 264 | elif ( action == "restart"): |
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[2416] | 265 | print DoRestartNow(data) |
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[1613] | 266 | elif ( action == "parin"): |
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[2416] | 267 | print GetPARIN(data) |
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[1613] | 268 | elif ( action == "rc"): |
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[2416] | 269 | print GetRC(data) |
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[1611] | 270 | else: |
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[2416] | 271 | print "Error. Action " + action + " unknown." |
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[1611] | 272 | |
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