[421] | 1 | #!/bin/ksh |
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| 2 | # palm_simple_run - a simple method for running the palm code without |
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| 3 | # using the mrun script |
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| 4 | # $Id: palm_simple_run 515 2010-03-18 02:30:38Z letzel $ |
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| 5 | |
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| 6 | # This script runs the palm code in a unique subdirectory (OUTPUT..., |
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| 7 | # current time/date and number of processors are part of the subdirectory |
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| 8 | # name). |
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| 9 | # It requires that palm has been installed with command |
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| 10 | # palm_simple_install and that the executable palm has been created |
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[515] | 11 | # with make in directory ...../MAKE_DEPOSITORY_simple |
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[421] | 12 | |
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| 13 | # Last changes: |
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| 14 | # 25/01/10 - Siggi - Generating the first version |
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[515] | 15 | # 18/03/10 - Siggi - Some comments changed |
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[421] | 16 | |
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| 17 | |
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| 18 | # Variable declarations + default values |
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| 19 | case=example_cbl |
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| 20 | cpumax=999999 |
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| 21 | localhost=unknown |
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| 22 | localhost_realname=$(hostname) |
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| 23 | mpi_procs=1 |
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| 24 | mpi_procs_per_node=1 |
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| 25 | openmp_threads=1 |
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| 26 | |
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| 27 | typeset -i ii |
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| 28 | |
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| 29 | |
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| 30 | # Read shellscript options |
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| 31 | while getopts :c:l:n:p:t: option |
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| 32 | do |
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| 33 | case $option in |
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| 34 | (c) case=$OPTARG;; |
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| 35 | (l) localhost=$OPTARG;; |
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| 36 | (n) mpi_procs_per_node=$OPTARG;; |
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| 37 | (p) mpi_procs=$OPTARG;; |
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| 38 | (t) openmp_threads=$OPTARG;; |
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| 39 | (\?) printf "\n +++ unknown option $OPTARG \n" |
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| 40 | printf "\n allowed option are -d, -f, -l, -s \n" |
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| 41 | exit;; |
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| 42 | esac |
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| 43 | done |
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| 44 | |
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| 45 | |
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| 46 | # Find out the global svn revision number |
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[426] | 47 | global_revision=`svnversion ${palm_dir}trunk 2>/dev/null` |
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[421] | 48 | global_revision="Rev: $global_revision" |
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| 49 | |
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| 50 | |
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| 51 | # Generate unique directory/files for this run |
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| 52 | timedate="`date +%d.%b_%H:%M:%S`" |
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[515] | 53 | suffix=$case+$mpi_procs+$timedate |
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[421] | 54 | RUNDIR=OUTPUT.$suffix/ |
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| 55 | |
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| 56 | if [[ ! -d $RUNDIR ]] |
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| 57 | then |
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| 58 | mkdir $RUNDIR |
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| 59 | echo "*** running in directory $RUNDIR" |
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| 60 | else |
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| 61 | echo "+++ ERROR: $RUNDIR exists\! Must be unique. Exiting." |
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| 62 | exit |
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| 63 | fi |
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| 64 | |
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| 65 | |
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| 66 | # Check if palm has been installed and copy executable into the run |
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| 67 | # directory |
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[426] | 68 | if [[ ! -f ${palm_dir}MAKE_DEPOSITORY_simple/palm ]] |
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[421] | 69 | then |
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| 70 | echo "+++ ERROR: palm executable does not exist." |
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| 71 | echo " Please run \"palm_simple_install\"." |
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| 72 | exit |
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| 73 | else |
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[426] | 74 | cp ${palm_dir}MAKE_DEPOSITORY_simple/palm $RUNDIR/palm |
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[421] | 75 | fi |
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| 76 | |
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| 77 | |
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| 78 | # Check, if parameter file exists and copy into the run directory |
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[426] | 79 | if [[ ! -f ${palm_dir}JOBS/${case}/INPUT/${case}_p3d ]] |
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[421] | 80 | then |
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| 81 | echo "+++ ERROR: parameter file" |
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[426] | 82 | echo " \"${palm_dir}JOBS/${case}/INPUT/${case}_p3d\"" |
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[421] | 83 | echo " does not exist." |
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| 84 | exit |
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| 85 | else |
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[426] | 86 | cp ${palm_dir}JOBS/${case}/INPUT/${case}_p3d $RUNDIR/PARIN |
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[421] | 87 | fi |
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| 88 | |
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| 89 | |
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| 90 | # Switch to run directory |
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| 91 | cd $RUNDIR |
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| 92 | |
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| 93 | |
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| 94 | |
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| 95 | # Create NAMELIST file containing environment values needed by palm |
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| 96 | cat > ENVPAR << %%END%% |
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| 97 | &envpar run_identifier = '$case', host = '$localhost', |
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| 98 | write_binary = false, tasks_per_node = $mpi_procs_per_node, |
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| 99 | maximum_cpu_time_allowed = ${cpumax}., |
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| 100 | revision = '$global_revision', |
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| 101 | local_dvrserver_running = .FALSE. / |
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| 102 | |
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| 103 | %%END%% |
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| 104 | |
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| 105 | |
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| 106 | # Coupled runs cannot be carried out with this simple run script |
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| 107 | echo "no_coupling" > runfile_atmos |
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| 108 | |
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| 109 | |
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| 110 | # Generate hostfile (if neccessary) |
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| 111 | (( ii = 1 )) |
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| 112 | while (( ii <= $mpi_procs )) |
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| 113 | do |
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| 114 | echo $localhost_realname >> hostfile |
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| 115 | (( ii = ii + 1 )) |
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| 116 | done |
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| 117 | |
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| 118 | |
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| 119 | # Set number of OpenMP threads |
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| 120 | export OMP_NUM_THREADS=$openmp_threads |
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| 121 | |
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| 122 | |
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| 123 | |
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| 124 | # Start palm run |
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| 125 | echo "*** palm will be run: MPI tasks: $mpi_procs OpenMP thread: $OMP_NUM_THREADS" |
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| 126 | |
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[515] | 127 | # IMUK: |
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| 128 | mpiexec -machinefile hostfile -n $mpi_procs ./palm < runfile_atmos |
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[421] | 129 | |
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[515] | 130 | # SGI-MPT HLRN |
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| 131 | # mpiexec_mpt -np $mpi_procs ./palm < runfile_atmos |
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[421] | 132 | |
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[515] | 133 | |
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[421] | 134 | echo "*** palm finished" |
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| 135 | echo "*** see" |
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| 136 | echo " \"$RUNDIR\"" |
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| 137 | echo " for results" |
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