[421] | 1 | #!/bin/ksh |
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[1046] | 2 | #--------------------------------------------------------------------------------# |
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| 3 | # This file is part of PALM. |
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| 4 | # |
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| 5 | # PALM is free software: you can redistribute it and/or modify it under the terms |
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| 6 | # of the GNU General Public License as published by the Free Software Foundation, |
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| 7 | # either version 3 of the License, or (at your option) any later version. |
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| 8 | # |
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| 9 | # PALM is distributed in the hope that it will be useful, but WITHOUT ANY |
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| 10 | # WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR |
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| 11 | # A PARTICULAR PURPOSE. See the GNU General Public License for more details. |
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| 12 | # |
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| 13 | # You should have received a copy of the GNU General Public License along with |
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| 14 | # PALM. If not, see <http://www.gnu.org/licenses/>. |
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| 15 | # |
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[1310] | 16 | # Copyright 1997-2014 Leibniz Universitaet Hannover |
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[1046] | 17 | #--------------------------------------------------------------------------------# |
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| 18 | # |
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| 19 | # Current revisions: |
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| 20 | # ----------------- |
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[1172] | 21 | # |
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[1046] | 22 | # |
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| 23 | # Former revisions: |
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| 24 | # ----------------- |
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| 25 | # $Id: palm_simple_run 1310 2014-03-14 08:01:56Z heinze $ |
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[1047] | 26 | # |
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[1222] | 27 | # 1221 2013-09-10 08:59:13Z raasch |
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| 28 | # setting of PGI_ACC_SYNCHRONOUS=1 for running with pgi-openacc |
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| 29 | # |
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[1221] | 30 | # 1172 2013-05-30 11:46:00Z raasch |
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| 31 | # for performance reasons set PGI_ACC_SYNCHRONOUS=1 for pgi/openacc execution |
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| 32 | # |
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[1172] | 33 | # 1171 2013-05-30 11:27:45Z raasch |
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| 34 | # new option -e which defines the execution command to be used to run PALM |
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| 35 | # |
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[1047] | 36 | # 1046 2012-11-09 14:38:45Z maronga |
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| 37 | # code put under GPL (PALM 3.9) |
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[1171] | 38 | # |
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| 39 | # 29/08/11 - BjornW - Adapted for lcflow (ForWind cluster in Oldenburg) |
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| 40 | # 18/03/10 - Siggi - Some comments changed |
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| 41 | # 25/01/10 - Siggi - Generating the first version |
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[1046] | 42 | |
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[1171] | 43 | |
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| 44 | #--------------------------------------------------------------------------------# |
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[421] | 45 | # palm_simple_run - a simple method for running the palm code without |
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| 46 | # using the mrun script |
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[1171] | 47 | # |
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| 48 | # This script runs the palm code in a unique subdirectory (OUTPUT..., |
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| 49 | # current time/date and number of processors are part of the subdirectory |
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| 50 | # name). |
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| 51 | # It requires that palm has been installed with command |
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| 52 | # palm_simple_install and that the executable palm has been created |
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| 53 | # with make in directory ...../MAKE_DEPOSITORY_simple |
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| 54 | #--------------------------------------------------------------------------------# |
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[421] | 55 | |
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| 56 | |
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| 57 | # Variable declarations + default values |
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| 58 | case=example_cbl |
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| 59 | cpumax=999999 |
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[1171] | 60 | execute_for=unknown |
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[421] | 61 | localhost=unknown |
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| 62 | localhost_realname=$(hostname) |
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| 63 | mpi_procs=1 |
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| 64 | mpi_procs_per_node=1 |
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| 65 | openmp_threads=1 |
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| 66 | |
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| 67 | typeset -i ii |
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| 68 | |
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| 69 | |
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| 70 | # Read shellscript options |
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[1171] | 71 | while getopts :c:e:l:n:p:t: option |
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[421] | 72 | do |
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| 73 | case $option in |
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| 74 | (c) case=$OPTARG;; |
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[1171] | 75 | (e) execute_for=$OPTARG;; |
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[421] | 76 | (l) localhost=$OPTARG;; |
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| 77 | (n) mpi_procs_per_node=$OPTARG;; |
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| 78 | (p) mpi_procs=$OPTARG;; |
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| 79 | (t) openmp_threads=$OPTARG;; |
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| 80 | (\?) printf "\n +++ unknown option $OPTARG \n" |
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[1171] | 81 | printf "\n allowed option are -c, -e, -l, -n, -p, -t \n" |
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[421] | 82 | exit;; |
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| 83 | esac |
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| 84 | done |
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| 85 | |
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| 86 | |
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| 87 | # Find out the global svn revision number |
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[426] | 88 | global_revision=`svnversion ${palm_dir}trunk 2>/dev/null` |
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[421] | 89 | global_revision="Rev: $global_revision" |
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| 90 | |
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| 91 | |
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| 92 | # Generate unique directory/files for this run |
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| 93 | timedate="`date +%d.%b_%H:%M:%S`" |
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[515] | 94 | suffix=$case+$mpi_procs+$timedate |
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[421] | 95 | RUNDIR=OUTPUT.$suffix/ |
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| 96 | |
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| 97 | if [[ ! -d $RUNDIR ]] |
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| 98 | then |
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| 99 | mkdir $RUNDIR |
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| 100 | echo "*** running in directory $RUNDIR" |
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| 101 | else |
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| 102 | echo "+++ ERROR: $RUNDIR exists\! Must be unique. Exiting." |
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| 103 | exit |
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| 104 | fi |
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| 105 | |
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| 106 | |
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| 107 | # Check if palm has been installed and copy executable into the run |
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| 108 | # directory |
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[426] | 109 | if [[ ! -f ${palm_dir}MAKE_DEPOSITORY_simple/palm ]] |
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[421] | 110 | then |
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| 111 | echo "+++ ERROR: palm executable does not exist." |
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| 112 | echo " Please run \"palm_simple_install\"." |
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| 113 | exit |
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| 114 | else |
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[426] | 115 | cp ${palm_dir}MAKE_DEPOSITORY_simple/palm $RUNDIR/palm |
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[421] | 116 | fi |
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| 117 | |
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| 118 | |
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| 119 | # Check, if parameter file exists and copy into the run directory |
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[426] | 120 | if [[ ! -f ${palm_dir}JOBS/${case}/INPUT/${case}_p3d ]] |
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[421] | 121 | then |
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| 122 | echo "+++ ERROR: parameter file" |
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[426] | 123 | echo " \"${palm_dir}JOBS/${case}/INPUT/${case}_p3d\"" |
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[421] | 124 | echo " does not exist." |
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| 125 | exit |
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| 126 | else |
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[426] | 127 | cp ${palm_dir}JOBS/${case}/INPUT/${case}_p3d $RUNDIR/PARIN |
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[421] | 128 | fi |
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| 129 | |
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| 130 | |
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| 131 | # Switch to run directory |
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| 132 | cd $RUNDIR |
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| 133 | |
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| 134 | |
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| 135 | |
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| 136 | # Create NAMELIST file containing environment values needed by palm |
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| 137 | cat > ENVPAR << %%END%% |
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| 138 | &envpar run_identifier = '$case', host = '$localhost', |
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[1171] | 139 | write_binary = 'false', tasks_per_node = $mpi_procs_per_node, |
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[421] | 140 | maximum_cpu_time_allowed = ${cpumax}., |
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| 141 | revision = '$global_revision', |
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| 142 | local_dvrserver_running = .FALSE. / |
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| 143 | |
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| 144 | %%END%% |
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| 145 | |
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| 146 | |
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| 147 | # Coupled runs cannot be carried out with this simple run script |
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| 148 | echo "no_coupling" > runfile_atmos |
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| 149 | |
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| 150 | |
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| 151 | # Generate hostfile (if neccessary) |
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| 152 | (( ii = 1 )) |
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| 153 | while (( ii <= $mpi_procs )) |
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| 154 | do |
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| 155 | echo $localhost_realname >> hostfile |
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| 156 | (( ii = ii + 1 )) |
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| 157 | done |
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| 158 | |
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| 159 | |
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| 160 | # Set number of OpenMP threads |
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| 161 | export OMP_NUM_THREADS=$openmp_threads |
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| 162 | |
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| 163 | |
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| 164 | |
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| 165 | # Start palm run |
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| 166 | echo "*** palm will be run: MPI tasks: $mpi_procs OpenMP thread: $OMP_NUM_THREADS" |
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| 167 | |
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[1171] | 168 | case $execute_for in |
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[421] | 169 | |
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[1171] | 170 | (imuk) mpiexec -machinefile hostfile -n $mpi_procs ./palm < runfile_atmos;; |
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| 171 | (sgi-mpt) mpiexec_mpt -np $mpi_procs ./palm < runfile_atmos;; |
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| 172 | (hpc-flow) mpiexec -machinefile $TMPDIR/machines -n $mpi_procs -env I_MPI_FABRICS shm:ofa ./palm < runfile_atmos;; |
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[1221] | 173 | (pgi-openacc) export PGI_ACC_SYNCHRONOUS=1; ./palm;; |
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[1171] | 174 | (*) echo "+++ -e option to define execution command is missing";; |
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[421] | 175 | |
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[1171] | 176 | esac |
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[515] | 177 | |
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[421] | 178 | echo "*** palm finished" |
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| 179 | echo "*** see" |
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| 180 | echo " \"$RUNDIR\"" |
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| 181 | echo " for results" |
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