| 1 | #!/usr/bin/python |
|---|
| 2 | # -*- coding: utf-8 -*- |
|---|
| 3 | #--------------------------------------------------------------------------------# |
|---|
| 4 | # This file is part of PALM. |
|---|
| 5 | # |
|---|
| 6 | # PALM is free software: you can redistribute it and/or modify it under the terms |
|---|
| 7 | # of the GNU General Public License as published by the Free Software Foundation, |
|---|
| 8 | # either version 3 of the License, or (at your option) any later version. |
|---|
| 9 | # |
|---|
| 10 | # PALM is distributed in the hope that it will be useful, but WITHOUT ANY |
|---|
| 11 | # WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR |
|---|
| 12 | # A PARTICULAR PURPOSE. See the GNU General Public License for more details. |
|---|
| 13 | # |
|---|
| 14 | # You should have received a copy of the GNU General Public License along with |
|---|
| 15 | # PALM. If not, see <http://www.gnu.org/licenses/>. |
|---|
| 16 | # |
|---|
| 17 | # Copyright 1997-2016 Leibniz Universitaet Hannover |
|---|
| 18 | ##--------------------------------------------------------------------------------# |
|---|
| 19 | # |
|---|
| 20 | # Current revisions: |
|---|
| 21 | # ----------------- |
|---|
| 22 | # |
|---|
| 23 | # |
|---|
| 24 | # Former revisions: |
|---|
| 25 | # ----------------- |
|---|
| 26 | # $Id: palm_jm 2504 2017-09-27 10:36:13Z Giersch $ |
|---|
| 27 | # Bugfix: jobs were not loaded on start. |
|---|
| 28 | # |
|---|
| 29 | # 2484 2017-09-20 14:22:42Z maronga |
|---|
| 30 | # Adapted for palmrun with USER_CODE always stored under /JOBS/name/USER_CODE/. |
|---|
| 31 | # Added PALM logo |
|---|
| 32 | # |
|---|
| 33 | # 2068 2016-11-11 21:59:39Z maronga |
|---|
| 34 | # |
|---|
| 35 | # 2067 2016-11-11 21:55:49Z maronga |
|---|
| 36 | # Minor bugfix: palm_jm can now be called from any location |
|---|
| 37 | # |
|---|
| 38 | # 2065 2016-11-11 12:25:10Z maronga |
|---|
| 39 | # Initial revision |
|---|
| 40 | # |
|---|
| 41 | # |
|---|
| 42 | # Description: |
|---|
| 43 | # ------------ |
|---|
| 44 | # PALM job manager works a file manager for PALM input files. It lists all jobs in |
|---|
| 45 | # the working directory and displays associated input and user code files, which |
|---|
| 46 | # can be opened directly from the interface. Also, it is possible to copy jobs and |
|---|
| 47 | # to create entire new sets of jobs based on a reference job. |
|---|
| 48 | # |
|---|
| 49 | # Instructions: |
|---|
| 50 | # ------------- |
|---|
| 51 | # 1) Start palm_jm either from mrungui or from shell by "nohup palm_jm&" |
|---|
| 52 | # |
|---|
| 53 | # To do: |
|---|
| 54 | # ------ |
|---|
| 55 | # 1) Add display for the MONITORING and OUTPUT folder |
|---|
| 56 | # 2) Add zip function to export single or multiple jobs |
|---|
| 57 | # 3) Allow for copying INPUT files to a remote host |
|---|
| 58 | #------------------------------------------------------------------------------! |
|---|
| 59 | |
|---|
| 60 | import os |
|---|
| 61 | from PyQt4 import QtGui, QtCore, uic |
|---|
| 62 | from PyQt4.QtCore import pyqtSlot,SIGNAL,SLOT |
|---|
| 63 | import shutil |
|---|
| 64 | import subprocess as sub |
|---|
| 65 | import sys |
|---|
| 66 | |
|---|
| 67 | set_list = [] |
|---|
| 68 | |
|---|
| 69 | |
|---|
| 70 | # Determine PALM directories |
|---|
| 71 | try: |
|---|
| 72 | devnull = open(os.devnull, 'w') |
|---|
| 73 | out = sub.check_output("echo $PALM_BIN", shell=True, stderr=sub.STDOUT) |
|---|
| 74 | palm_bin = out.rstrip() |
|---|
| 75 | palm_dir = out.split("palm")[0] + "palm/" + out.split("palm")[1].split("/")[1] |
|---|
| 76 | out = None |
|---|
| 77 | |
|---|
| 78 | job_dir = palm_dir + '/JOBS' |
|---|
| 79 | user_dir = palm_dir + '/USER_CODE' |
|---|
| 80 | |
|---|
| 81 | except: |
|---|
| 82 | print "Error. $PALM_BIN is not set." |
|---|
| 83 | raise SystemExit |
|---|
| 84 | |
|---|
| 85 | |
|---|
| 86 | |
|---|
| 87 | # MainWindow class |
|---|
| 88 | class JobManager(QtGui.QMainWindow): |
|---|
| 89 | |
|---|
| 90 | def __init__(self): |
|---|
| 91 | super(JobManager, self).__init__() |
|---|
| 92 | |
|---|
| 93 | self.InitUi() |
|---|
| 94 | |
|---|
| 95 | |
|---|
| 96 | # Initialized MainWindow UI |
|---|
| 97 | def InitUi(self): |
|---|
| 98 | |
|---|
| 99 | # Load predefined mainwindow |
|---|
| 100 | uic.loadUi(palm_bin + '/palm_jm_files/palm_jm.ui', self) |
|---|
| 101 | |
|---|
| 102 | self.palm_logo.setPixmap(QtGui.QPixmap(palm_dir + "/trunk/SCRIPTS/palmrungui_files/logo.png")) |
|---|
| 103 | |
|---|
| 104 | |
|---|
| 105 | |
|---|
| 106 | # Display MainWindow |
|---|
| 107 | self.show() |
|---|
| 108 | QtGui.QApplication.processEvents() |
|---|
| 109 | |
|---|
| 110 | self.load_jobs() |
|---|
| 111 | |
|---|
| 112 | |
|---|
| 113 | def update_all(self): |
|---|
| 114 | |
|---|
| 115 | self.setEnabled(False) |
|---|
| 116 | self.list_input.clear() |
|---|
| 117 | self.list_user.clear() |
|---|
| 118 | self.load_jobs() |
|---|
| 119 | self.setEnabled(True) |
|---|
| 120 | |
|---|
| 121 | # Load jobs into list |
|---|
| 122 | def load_jobs(self): |
|---|
| 123 | |
|---|
| 124 | self.list_jobs.clear() |
|---|
| 125 | self.push_copy.setEnabled(False) |
|---|
| 126 | self.push_create_set.setEnabled(False) |
|---|
| 127 | |
|---|
| 128 | self.line_path.setText(job_dir + "/") |
|---|
| 129 | |
|---|
| 130 | list_of_files = os.listdir(job_dir) |
|---|
| 131 | |
|---|
| 132 | for i in range(0,len(list_of_files)): |
|---|
| 133 | tmp_file = job_dir + "/" + list_of_files[i] |
|---|
| 134 | |
|---|
| 135 | if ( os.path.isdir(tmp_file) ): |
|---|
| 136 | self.list_jobs.addItem(str(list_of_files[i])) |
|---|
| 137 | |
|---|
| 138 | |
|---|
| 139 | # Update input and user code lists |
|---|
| 140 | def update_input(self): |
|---|
| 141 | |
|---|
| 142 | self.list_input.clear() |
|---|
| 143 | self.list_user.clear() |
|---|
| 144 | self.push_copy.setEnabled(True) |
|---|
| 145 | self.push_create_set.setEnabled(True) |
|---|
| 146 | |
|---|
| 147 | job_to_show = job_dir + "/" + self.list_jobs.currentItem().text() + "/INPUT" |
|---|
| 148 | |
|---|
| 149 | if ( os.path.isdir(job_to_show) ): |
|---|
| 150 | |
|---|
| 151 | list_of_files = os.listdir(job_to_show) |
|---|
| 152 | |
|---|
| 153 | for i in range(0,len(list_of_files)): |
|---|
| 154 | tmp_file = job_to_show + "/" + list_of_files[i] |
|---|
| 155 | |
|---|
| 156 | if ( os.path.isfile(tmp_file) ): |
|---|
| 157 | self.list_input.addItem(str(list_of_files[i])) |
|---|
| 158 | |
|---|
| 159 | job_to_show = job_dir + "/" + self.list_jobs.currentItem().text() + "/USER_CODE" |
|---|
| 160 | |
|---|
| 161 | if ( os.path.isdir(job_to_show) ): |
|---|
| 162 | |
|---|
| 163 | list_of_files = os.listdir(job_to_show) |
|---|
| 164 | |
|---|
| 165 | for i in range(0,len(list_of_files)): |
|---|
| 166 | tmp_file = job_to_show + "/" + list_of_files[i] |
|---|
| 167 | |
|---|
| 168 | if ( os.path.isfile(tmp_file) ): |
|---|
| 169 | self.list_user.addItem(str(list_of_files[i])) |
|---|
| 170 | |
|---|
| 171 | |
|---|
| 172 | # Make a copy of a job |
|---|
| 173 | def copy_job(self): |
|---|
| 174 | |
|---|
| 175 | self.setEnabled(False) |
|---|
| 176 | old_job_name = self.list_jobs.currentItem().text() |
|---|
| 177 | |
|---|
| 178 | text, ret = QtGui.QInputDialog.getText(self, "Copy job", "Enter new job name:", mode = QtGui.QLineEdit.Normal, text = old_job_name) |
|---|
| 179 | |
|---|
| 180 | if ( ret ): |
|---|
| 181 | new_job_name = str(text) |
|---|
| 182 | else: |
|---|
| 183 | self.setEnabled(True) |
|---|
| 184 | return |
|---|
| 185 | |
|---|
| 186 | new_input_dir = job_dir + "/" + new_job_name + "/INPUT" |
|---|
| 187 | |
|---|
| 188 | # check if a job exists with the new job name |
|---|
| 189 | if ( os.path.isdir(new_input_dir) ): |
|---|
| 190 | notify = QtGui.QMessageBox.warning(self,'Create new job directory',"Error. Could not create job directory. A job with the new name already exists.") |
|---|
| 191 | self.setEnabled(True) |
|---|
| 192 | return |
|---|
| 193 | else: |
|---|
| 194 | os.makedirs(new_input_dir) |
|---|
| 195 | |
|---|
| 196 | # copy and rename input files (if present) |
|---|
| 197 | job_to_copy = job_dir + "/" + old_job_name + "/INPUT" |
|---|
| 198 | |
|---|
| 199 | if ( os.path.isdir(job_to_copy) ): |
|---|
| 200 | |
|---|
| 201 | list_of_files = os.listdir(job_to_copy) |
|---|
| 202 | |
|---|
| 203 | for i in range(0,len(list_of_files)): |
|---|
| 204 | |
|---|
| 205 | tmp_file = job_to_copy + "/" + list_of_files[i] |
|---|
| 206 | new_file = new_input_dir + "/" + list_of_files[i].replace(old_job_name, new_job_name) |
|---|
| 207 | shutil.copy(tmp_file, new_file) |
|---|
| 208 | |
|---|
| 209 | |
|---|
| 210 | |
|---|
| 211 | |
|---|
| 212 | new_user_dir = job_dir + "/" + new_job_name + "/USER_CODE" |
|---|
| 213 | |
|---|
| 214 | # check if user code exists in the new job directory |
|---|
| 215 | if ( os.path.isdir(new_user_dir) ): |
|---|
| 216 | notify = QtGui.QMessageBox.warning(self,'Create new user code directory',"Error. Could not create user code directory. A user code directiory with the new name already exists.") |
|---|
| 217 | self.setEnabled(True) |
|---|
| 218 | return |
|---|
| 219 | else: |
|---|
| 220 | os.makedirs(new_user_dir) |
|---|
| 221 | |
|---|
| 222 | |
|---|
| 223 | # copy user code files (if present) |
|---|
| 224 | user_to_copy = job_dir + "/" + old_job_name + "/USER_CODE" |
|---|
| 225 | |
|---|
| 226 | if ( os.path.isdir(user_to_copy) ): |
|---|
| 227 | |
|---|
| 228 | list_of_files = os.listdir(user_to_copy) |
|---|
| 229 | |
|---|
| 230 | for i in range(0,len(list_of_files)): |
|---|
| 231 | |
|---|
| 232 | tmp_file = user_to_copy + "/" + list_of_files[i] |
|---|
| 233 | new_file = new_user_dir + "/" + list_of_files[i] |
|---|
| 234 | shutil.copy(tmp_file, new_file) |
|---|
| 235 | |
|---|
| 236 | self.load_jobs() |
|---|
| 237 | self.list_input.clear() |
|---|
| 238 | self.list_user.clear() |
|---|
| 239 | self.setEnabled(True) |
|---|
| 240 | |
|---|
| 241 | |
|---|
| 242 | # Create a whole set of jobs |
|---|
| 243 | def create_set(self): |
|---|
| 244 | |
|---|
| 245 | global set_list |
|---|
| 246 | # disable mainwindow |
|---|
| 247 | self.setEnabled(False) |
|---|
| 248 | |
|---|
| 249 | # show Options Dialog |
|---|
| 250 | opt = CreateSetBox() |
|---|
| 251 | opt.exec_() |
|---|
| 252 | |
|---|
| 253 | old_job_name = self.list_jobs.currentItem().text() |
|---|
| 254 | |
|---|
| 255 | for j in range(0,len(set_list)): |
|---|
| 256 | |
|---|
| 257 | if ( set_list[j] != "" ): |
|---|
| 258 | new_job_name = str(set_list[j]) |
|---|
| 259 | new_input_dir = job_dir + "/" + str(set_list[j]) + "/INPUT" |
|---|
| 260 | else: |
|---|
| 261 | continue |
|---|
| 262 | |
|---|
| 263 | # check if a job exists with the new job name |
|---|
| 264 | if ( os.path.isdir(new_input_dir) ): |
|---|
| 265 | notify = QtGui.QMessageBox.warning(self,'Create new job directory',"Error. Could not create job directory. A job with the new name already exists.") |
|---|
| 266 | self.setEnabled(True) |
|---|
| 267 | return |
|---|
| 268 | else: |
|---|
| 269 | os.makedirs(new_input_dir) |
|---|
| 270 | |
|---|
| 271 | # copy and rename input files (if present) |
|---|
| 272 | job_to_copy = job_dir + "/" + old_job_name + "/INPUT" |
|---|
| 273 | |
|---|
| 274 | if ( os.path.isdir(job_to_copy) ): |
|---|
| 275 | |
|---|
| 276 | list_of_files = os.listdir(job_to_copy) |
|---|
| 277 | |
|---|
| 278 | for i in range(0,len(list_of_files)): |
|---|
| 279 | |
|---|
| 280 | tmp_file = job_to_copy + "/" + list_of_files[i] |
|---|
| 281 | new_file = new_input_dir + "/" + list_of_files[i].replace(old_job_name, new_job_name) |
|---|
| 282 | shutil.copy(tmp_file, new_file) |
|---|
| 283 | |
|---|
| 284 | |
|---|
| 285 | new_user_dir = job_dir + "/" + new_job_name + "/USER_CODE" |
|---|
| 286 | |
|---|
| 287 | # check if user code exists in the new job directory |
|---|
| 288 | if ( os.path.isdir(new_user_dir) ): |
|---|
| 289 | notify = QtGui.QMessageBox.warning(self,'Create new user code directory',"Error. Could not create user code directory. A user code directiory with the new name already exists.") |
|---|
| 290 | self.setEnabled(True) |
|---|
| 291 | return |
|---|
| 292 | else: |
|---|
| 293 | os.makedirs(new_user_dir) |
|---|
| 294 | |
|---|
| 295 | |
|---|
| 296 | # copy user code files (if present) |
|---|
| 297 | user_to_copy = job_dir + "/" + old_job_name + "/USER_CODE" |
|---|
| 298 | |
|---|
| 299 | if ( os.path.isdir(user_to_copy) ): |
|---|
| 300 | |
|---|
| 301 | list_of_files = os.listdir(user_to_copy) |
|---|
| 302 | |
|---|
| 303 | for i in range(0,len(list_of_files)): |
|---|
| 304 | |
|---|
| 305 | tmp_file = user_to_copy + "/" + list_of_files[i] |
|---|
| 306 | new_file = new_user_dir + "/" + list_of_files[i] |
|---|
| 307 | shutil.copy(tmp_file, new_file) |
|---|
| 308 | |
|---|
| 309 | self.load_jobs() |
|---|
| 310 | self.list_input.clear() |
|---|
| 311 | self.list_user.clear() |
|---|
| 312 | |
|---|
| 313 | self.setEnabled(True) |
|---|
| 314 | |
|---|
| 315 | |
|---|
| 316 | # Add a custom context menu |
|---|
| 317 | def openmenuinput(self, position): |
|---|
| 318 | |
|---|
| 319 | menu = QtGui.QMenu() |
|---|
| 320 | |
|---|
| 321 | selection = self.list_input.selectedItems() |
|---|
| 322 | |
|---|
| 323 | if ( len(selection) != 0 ): |
|---|
| 324 | |
|---|
| 325 | openAction = menu.addAction('Open selected files') |
|---|
| 326 | openAction.setStatusTip('Open file(s) in your favorite editor') |
|---|
| 327 | openAction.triggered.connect(self.OpenFilesInput) |
|---|
| 328 | action = menu.exec_(self.list_input.mapToGlobal(position)) |
|---|
| 329 | |
|---|
| 330 | # Add a custom context menu |
|---|
| 331 | def openmenuuser(self, position): |
|---|
| 332 | |
|---|
| 333 | menu = QtGui.QMenu() |
|---|
| 334 | |
|---|
| 335 | selection = self.list_user.selectedItems() |
|---|
| 336 | |
|---|
| 337 | if ( len(selection) != 0 ): |
|---|
| 338 | |
|---|
| 339 | openAction = menu.addAction('Open selected files') |
|---|
| 340 | openAction.setStatusTip('Open file(s) in your favorite editor') |
|---|
| 341 | openAction.triggered.connect(self.OpenFilesUser) |
|---|
| 342 | action = menu.exec_(self.list_user.mapToGlobal(position)) |
|---|
| 343 | |
|---|
| 344 | |
|---|
| 345 | def OpenFilesInput(self): |
|---|
| 346 | |
|---|
| 347 | sel_job = self.list_jobs.currentItem().text() |
|---|
| 348 | sel_files = self.list_input.selectedItems() |
|---|
| 349 | |
|---|
| 350 | input_dir = job_dir + "/" + sel_job + "/INPUT/" |
|---|
| 351 | |
|---|
| 352 | open_files = "" |
|---|
| 353 | for i in range(0,len(sel_files)): |
|---|
| 354 | open_files = open_files + "xdg-open " + input_dir + sel_files[i].text() + "; " |
|---|
| 355 | |
|---|
| 356 | os.system(str(open_files)) |
|---|
| 357 | |
|---|
| 358 | def OpenFilesUser(self): |
|---|
| 359 | |
|---|
| 360 | sel_job = self.list_jobs.currentItem().text() |
|---|
| 361 | sel_files = self.list_user.selectedItems() |
|---|
| 362 | |
|---|
| 363 | input_dir = job_dir + "/" + sel_job + "/USER_CODE/" |
|---|
| 364 | |
|---|
| 365 | open_files = "" |
|---|
| 366 | for i in range(0,len(sel_files)): |
|---|
| 367 | open_files = open_files + "xdg-open " + input_dir + sel_files[i].text() + "; " |
|---|
| 368 | |
|---|
| 369 | os.system(str(open_files)) |
|---|
| 370 | selection = self.list_jobs.selectedItems() |
|---|
| 371 | |
|---|
| 372 | |
|---|
| 373 | |
|---|
| 374 | # Message box for showing RUN_CONTROL output |
|---|
| 375 | class CreateSetBox(QtGui.QDialog): |
|---|
| 376 | def __init__(self): |
|---|
| 377 | |
|---|
| 378 | super(CreateSetBox, self).__init__() |
|---|
| 379 | |
|---|
| 380 | uic.loadUi(palm_bin + '/palm_jm_files/palm_jm_create_set.ui', self) |
|---|
| 381 | |
|---|
| 382 | self.show() |
|---|
| 383 | |
|---|
| 384 | return |
|---|
| 385 | |
|---|
| 386 | # Cancel button |
|---|
| 387 | def rejected(self): |
|---|
| 388 | |
|---|
| 389 | self.close() |
|---|
| 390 | |
|---|
| 391 | return |
|---|
| 392 | |
|---|
| 393 | |
|---|
| 394 | # OK button |
|---|
| 395 | def accept(self): |
|---|
| 396 | |
|---|
| 397 | global set_list |
|---|
| 398 | |
|---|
| 399 | text = self.list.toPlainText() |
|---|
| 400 | set_list = text.split('\n') |
|---|
| 401 | self.close() |
|---|
| 402 | |
|---|
| 403 | return |
|---|
| 404 | |
|---|
| 405 | # Main loop |
|---|
| 406 | def main(): |
|---|
| 407 | |
|---|
| 408 | app = QtGui.QApplication(sys.argv) |
|---|
| 409 | res = JobManager() |
|---|
| 410 | sys.exit(app.exec_()) |
|---|
| 411 | |
|---|
| 412 | |
|---|
| 413 | if __name__ == '__main__': |
|---|
| 414 | main() |
|---|
