| 1 | #!/usr/bin/python |
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| 2 | # -*- coding: utf-8 -*- |
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| 3 | #--------------------------------------------------------------------------------# |
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| 4 | # This file is part of PALM. |
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| 5 | # |
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| 6 | # PALM is free software: you can redistribute it and/or modify it under the terms |
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| 7 | # of the GNU General Public License as published by the Free Software Foundation, |
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| 8 | # either version 3 of the License, or (at your option) any later version. |
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| 9 | # |
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| 10 | # PALM is distributed in the hope that it will be useful, but WITHOUT ANY |
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| 11 | # WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR |
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| 12 | # A PARTICULAR PURPOSE. See the GNU General Public License for more details. |
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| 13 | # |
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| 14 | # You should have received a copy of the GNU General Public License along with |
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| 15 | # PALM. If not, see <http://www.gnu.org/licenses/>. |
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| 16 | # |
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| 17 | # Copyright 1997-2016 Leibniz Universitaet Hannover |
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| 18 | ##--------------------------------------------------------------------------------# |
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| 19 | # |
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| 20 | # Current revisions: |
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| 21 | # ----------------- |
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| 22 | # |
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| 23 | # |
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| 24 | # Former revisions: |
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| 25 | # ----------------- |
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| 26 | # $Id: palm_jm 2504 2017-09-27 10:36:13Z knoop $ |
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| 27 | # Bugfix: jobs were not loaded on start. |
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| 28 | # |
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| 29 | # 2484 2017-09-20 14:22:42Z maronga |
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| 30 | # Adapted for palmrun with USER_CODE always stored under /JOBS/name/USER_CODE/. |
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| 31 | # Added PALM logo |
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| 32 | # |
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| 33 | # 2068 2016-11-11 21:59:39Z maronga |
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| 34 | # |
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| 35 | # 2067 2016-11-11 21:55:49Z maronga |
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| 36 | # Minor bugfix: palm_jm can now be called from any location |
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| 37 | # |
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| 38 | # 2065 2016-11-11 12:25:10Z maronga |
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| 39 | # Initial revision |
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| 40 | # |
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| 41 | # |
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| 42 | # Description: |
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| 43 | # ------------ |
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| 44 | # PALM job manager works a file manager for PALM input files. It lists all jobs in |
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| 45 | # the working directory and displays associated input and user code files, which |
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| 46 | # can be opened directly from the interface. Also, it is possible to copy jobs and |
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| 47 | # to create entire new sets of jobs based on a reference job. |
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| 48 | # |
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| 49 | # Instructions: |
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| 50 | # ------------- |
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| 51 | # 1) Start palm_jm either from mrungui or from shell by "nohup palm_jm&" |
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| 52 | # |
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| 53 | # To do: |
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| 54 | # ------ |
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| 55 | # 1) Add display for the MONITORING and OUTPUT folder |
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| 56 | # 2) Add zip function to export single or multiple jobs |
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| 57 | # 3) Allow for copying INPUT files to a remote host |
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| 58 | #------------------------------------------------------------------------------! |
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| 59 | |
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| 60 | import os |
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| 61 | from PyQt4 import QtGui, QtCore, uic |
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| 62 | from PyQt4.QtCore import pyqtSlot,SIGNAL,SLOT |
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| 63 | import shutil |
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| 64 | import subprocess as sub |
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| 65 | import sys |
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| 66 | |
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| 67 | set_list = [] |
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| 68 | |
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| 69 | |
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| 70 | # Determine PALM directories |
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| 71 | try: |
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| 72 | devnull = open(os.devnull, 'w') |
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| 73 | out = sub.check_output("echo $PALM_BIN", shell=True, stderr=sub.STDOUT) |
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| 74 | palm_bin = out.rstrip() |
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| 75 | palm_dir = out.split("palm")[0] + "palm/" + out.split("palm")[1].split("/")[1] |
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| 76 | out = None |
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| 77 | |
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| 78 | job_dir = palm_dir + '/JOBS' |
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| 79 | user_dir = palm_dir + '/USER_CODE' |
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| 80 | |
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| 81 | except: |
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| 82 | print "Error. $PALM_BIN is not set." |
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| 83 | raise SystemExit |
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| 84 | |
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| 85 | |
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| 86 | |
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| 87 | # MainWindow class |
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| 88 | class JobManager(QtGui.QMainWindow): |
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| 89 | |
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| 90 | def __init__(self): |
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| 91 | super(JobManager, self).__init__() |
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| 92 | |
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| 93 | self.InitUi() |
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| 94 | |
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| 95 | |
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| 96 | # Initialized MainWindow UI |
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| 97 | def InitUi(self): |
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| 98 | |
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| 99 | # Load predefined mainwindow |
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| 100 | uic.loadUi(palm_bin + '/palm_jm_files/palm_jm.ui', self) |
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| 101 | |
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| 102 | self.palm_logo.setPixmap(QtGui.QPixmap(palm_dir + "/trunk/SCRIPTS/palmrungui_files/logo.png")) |
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| 103 | |
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| 104 | |
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| 105 | |
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| 106 | # Display MainWindow |
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| 107 | self.show() |
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| 108 | QtGui.QApplication.processEvents() |
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| 109 | |
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| 110 | self.load_jobs() |
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| 111 | |
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| 112 | |
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| 113 | def update_all(self): |
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| 114 | |
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| 115 | self.setEnabled(False) |
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| 116 | self.list_input.clear() |
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| 117 | self.list_user.clear() |
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| 118 | self.load_jobs() |
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| 119 | self.setEnabled(True) |
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| 120 | |
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| 121 | # Load jobs into list |
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| 122 | def load_jobs(self): |
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| 123 | |
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| 124 | self.list_jobs.clear() |
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| 125 | self.push_copy.setEnabled(False) |
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| 126 | self.push_create_set.setEnabled(False) |
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| 127 | |
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| 128 | self.line_path.setText(job_dir + "/") |
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| 129 | |
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| 130 | list_of_files = os.listdir(job_dir) |
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| 131 | |
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| 132 | for i in range(0,len(list_of_files)): |
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| 133 | tmp_file = job_dir + "/" + list_of_files[i] |
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| 134 | |
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| 135 | if ( os.path.isdir(tmp_file) ): |
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| 136 | self.list_jobs.addItem(str(list_of_files[i])) |
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| 137 | |
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| 138 | |
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| 139 | # Update input and user code lists |
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| 140 | def update_input(self): |
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| 141 | |
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| 142 | self.list_input.clear() |
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| 143 | self.list_user.clear() |
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| 144 | self.push_copy.setEnabled(True) |
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| 145 | self.push_create_set.setEnabled(True) |
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| 146 | |
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| 147 | job_to_show = job_dir + "/" + self.list_jobs.currentItem().text() + "/INPUT" |
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| 148 | |
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| 149 | if ( os.path.isdir(job_to_show) ): |
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| 150 | |
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| 151 | list_of_files = os.listdir(job_to_show) |
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| 152 | |
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| 153 | for i in range(0,len(list_of_files)): |
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| 154 | tmp_file = job_to_show + "/" + list_of_files[i] |
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| 155 | |
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| 156 | if ( os.path.isfile(tmp_file) ): |
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| 157 | self.list_input.addItem(str(list_of_files[i])) |
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| 158 | |
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| 159 | job_to_show = job_dir + "/" + self.list_jobs.currentItem().text() + "/USER_CODE" |
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| 160 | |
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| 161 | if ( os.path.isdir(job_to_show) ): |
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| 162 | |
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| 163 | list_of_files = os.listdir(job_to_show) |
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| 164 | |
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| 165 | for i in range(0,len(list_of_files)): |
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| 166 | tmp_file = job_to_show + "/" + list_of_files[i] |
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| 167 | |
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| 168 | if ( os.path.isfile(tmp_file) ): |
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| 169 | self.list_user.addItem(str(list_of_files[i])) |
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| 170 | |
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| 171 | |
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| 172 | # Make a copy of a job |
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| 173 | def copy_job(self): |
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| 174 | |
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| 175 | self.setEnabled(False) |
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| 176 | old_job_name = self.list_jobs.currentItem().text() |
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| 177 | |
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| 178 | text, ret = QtGui.QInputDialog.getText(self, "Copy job", "Enter new job name:", mode = QtGui.QLineEdit.Normal, text = old_job_name) |
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| 179 | |
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| 180 | if ( ret ): |
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| 181 | new_job_name = str(text) |
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| 182 | else: |
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| 183 | self.setEnabled(True) |
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| 184 | return |
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| 185 | |
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| 186 | new_input_dir = job_dir + "/" + new_job_name + "/INPUT" |
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| 187 | |
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| 188 | # check if a job exists with the new job name |
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| 189 | if ( os.path.isdir(new_input_dir) ): |
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| 190 | notify = QtGui.QMessageBox.warning(self,'Create new job directory',"Error. Could not create job directory. A job with the new name already exists.") |
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| 191 | self.setEnabled(True) |
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| 192 | return |
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| 193 | else: |
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| 194 | os.makedirs(new_input_dir) |
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| 195 | |
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| 196 | # copy and rename input files (if present) |
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| 197 | job_to_copy = job_dir + "/" + old_job_name + "/INPUT" |
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| 198 | |
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| 199 | if ( os.path.isdir(job_to_copy) ): |
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| 200 | |
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| 201 | list_of_files = os.listdir(job_to_copy) |
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| 202 | |
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| 203 | for i in range(0,len(list_of_files)): |
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| 204 | |
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| 205 | tmp_file = job_to_copy + "/" + list_of_files[i] |
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| 206 | new_file = new_input_dir + "/" + list_of_files[i].replace(old_job_name, new_job_name) |
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| 207 | shutil.copy(tmp_file, new_file) |
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| 208 | |
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| 209 | |
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| 210 | |
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| 211 | |
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| 212 | new_user_dir = job_dir + "/" + new_job_name + "/USER_CODE" |
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| 213 | |
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| 214 | # check if user code exists in the new job directory |
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| 215 | if ( os.path.isdir(new_user_dir) ): |
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| 216 | notify = QtGui.QMessageBox.warning(self,'Create new user code directory',"Error. Could not create user code directory. A user code directiory with the new name already exists.") |
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| 217 | self.setEnabled(True) |
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| 218 | return |
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| 219 | else: |
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| 220 | os.makedirs(new_user_dir) |
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| 221 | |
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| 222 | |
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| 223 | # copy user code files (if present) |
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| 224 | user_to_copy = job_dir + "/" + old_job_name + "/USER_CODE" |
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| 225 | |
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| 226 | if ( os.path.isdir(user_to_copy) ): |
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| 227 | |
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| 228 | list_of_files = os.listdir(user_to_copy) |
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| 229 | |
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| 230 | for i in range(0,len(list_of_files)): |
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| 231 | |
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| 232 | tmp_file = user_to_copy + "/" + list_of_files[i] |
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| 233 | new_file = new_user_dir + "/" + list_of_files[i] |
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| 234 | shutil.copy(tmp_file, new_file) |
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| 235 | |
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| 236 | self.load_jobs() |
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| 237 | self.list_input.clear() |
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| 238 | self.list_user.clear() |
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| 239 | self.setEnabled(True) |
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| 240 | |
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| 241 | |
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| 242 | # Create a whole set of jobs |
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| 243 | def create_set(self): |
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| 244 | |
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| 245 | global set_list |
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| 246 | # disable mainwindow |
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| 247 | self.setEnabled(False) |
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| 248 | |
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| 249 | # show Options Dialog |
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| 250 | opt = CreateSetBox() |
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| 251 | opt.exec_() |
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| 252 | |
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| 253 | old_job_name = self.list_jobs.currentItem().text() |
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| 254 | |
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| 255 | for j in range(0,len(set_list)): |
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| 256 | |
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| 257 | if ( set_list[j] != "" ): |
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| 258 | new_job_name = str(set_list[j]) |
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| 259 | new_input_dir = job_dir + "/" + str(set_list[j]) + "/INPUT" |
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| 260 | else: |
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| 261 | continue |
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| 262 | |
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| 263 | # check if a job exists with the new job name |
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| 264 | if ( os.path.isdir(new_input_dir) ): |
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| 265 | notify = QtGui.QMessageBox.warning(self,'Create new job directory',"Error. Could not create job directory. A job with the new name already exists.") |
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| 266 | self.setEnabled(True) |
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| 267 | return |
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| 268 | else: |
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| 269 | os.makedirs(new_input_dir) |
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| 270 | |
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| 271 | # copy and rename input files (if present) |
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| 272 | job_to_copy = job_dir + "/" + old_job_name + "/INPUT" |
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| 273 | |
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| 274 | if ( os.path.isdir(job_to_copy) ): |
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| 275 | |
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| 276 | list_of_files = os.listdir(job_to_copy) |
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| 277 | |
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| 278 | for i in range(0,len(list_of_files)): |
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| 279 | |
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| 280 | tmp_file = job_to_copy + "/" + list_of_files[i] |
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| 281 | new_file = new_input_dir + "/" + list_of_files[i].replace(old_job_name, new_job_name) |
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| 282 | shutil.copy(tmp_file, new_file) |
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| 283 | |
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| 284 | |
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| 285 | new_user_dir = job_dir + "/" + new_job_name + "/USER_CODE" |
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| 286 | |
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| 287 | # check if user code exists in the new job directory |
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| 288 | if ( os.path.isdir(new_user_dir) ): |
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| 289 | notify = QtGui.QMessageBox.warning(self,'Create new user code directory',"Error. Could not create user code directory. A user code directiory with the new name already exists.") |
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| 290 | self.setEnabled(True) |
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| 291 | return |
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| 292 | else: |
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| 293 | os.makedirs(new_user_dir) |
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| 294 | |
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| 295 | |
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| 296 | # copy user code files (if present) |
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| 297 | user_to_copy = job_dir + "/" + old_job_name + "/USER_CODE" |
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| 298 | |
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| 299 | if ( os.path.isdir(user_to_copy) ): |
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| 300 | |
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| 301 | list_of_files = os.listdir(user_to_copy) |
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| 302 | |
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| 303 | for i in range(0,len(list_of_files)): |
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| 304 | |
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| 305 | tmp_file = user_to_copy + "/" + list_of_files[i] |
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| 306 | new_file = new_user_dir + "/" + list_of_files[i] |
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| 307 | shutil.copy(tmp_file, new_file) |
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| 308 | |
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| 309 | self.load_jobs() |
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| 310 | self.list_input.clear() |
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| 311 | self.list_user.clear() |
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| 312 | |
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| 313 | self.setEnabled(True) |
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| 314 | |
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| 315 | |
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| 316 | # Add a custom context menu |
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| 317 | def openmenuinput(self, position): |
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| 318 | |
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| 319 | menu = QtGui.QMenu() |
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| 320 | |
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| 321 | selection = self.list_input.selectedItems() |
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| 322 | |
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| 323 | if ( len(selection) != 0 ): |
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| 324 | |
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| 325 | openAction = menu.addAction('Open selected files') |
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| 326 | openAction.setStatusTip('Open file(s) in your favorite editor') |
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| 327 | openAction.triggered.connect(self.OpenFilesInput) |
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| 328 | action = menu.exec_(self.list_input.mapToGlobal(position)) |
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| 329 | |
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| 330 | # Add a custom context menu |
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| 331 | def openmenuuser(self, position): |
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| 332 | |
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| 333 | menu = QtGui.QMenu() |
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| 334 | |
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| 335 | selection = self.list_user.selectedItems() |
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| 336 | |
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| 337 | if ( len(selection) != 0 ): |
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| 338 | |
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| 339 | openAction = menu.addAction('Open selected files') |
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| 340 | openAction.setStatusTip('Open file(s) in your favorite editor') |
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| 341 | openAction.triggered.connect(self.OpenFilesUser) |
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| 342 | action = menu.exec_(self.list_user.mapToGlobal(position)) |
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| 343 | |
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| 344 | |
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| 345 | def OpenFilesInput(self): |
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| 346 | |
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| 347 | sel_job = self.list_jobs.currentItem().text() |
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| 348 | sel_files = self.list_input.selectedItems() |
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| 349 | |
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| 350 | input_dir = job_dir + "/" + sel_job + "/INPUT/" |
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| 351 | |
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| 352 | open_files = "" |
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| 353 | for i in range(0,len(sel_files)): |
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| 354 | open_files = open_files + "xdg-open " + input_dir + sel_files[i].text() + "; " |
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| 355 | |
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| 356 | os.system(str(open_files)) |
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| 357 | |
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| 358 | def OpenFilesUser(self): |
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| 359 | |
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| 360 | sel_job = self.list_jobs.currentItem().text() |
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| 361 | sel_files = self.list_user.selectedItems() |
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| 362 | |
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| 363 | input_dir = job_dir + "/" + sel_job + "/USER_CODE/" |
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| 364 | |
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| 365 | open_files = "" |
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| 366 | for i in range(0,len(sel_files)): |
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| 367 | open_files = open_files + "xdg-open " + input_dir + sel_files[i].text() + "; " |
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| 368 | |
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| 369 | os.system(str(open_files)) |
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| 370 | selection = self.list_jobs.selectedItems() |
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| 371 | |
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| 372 | |
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| 373 | |
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| 374 | # Message box for showing RUN_CONTROL output |
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| 375 | class CreateSetBox(QtGui.QDialog): |
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| 376 | def __init__(self): |
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| 377 | |
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| 378 | super(CreateSetBox, self).__init__() |
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| 379 | |
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| 380 | uic.loadUi(palm_bin + '/palm_jm_files/palm_jm_create_set.ui', self) |
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| 381 | |
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| 382 | self.show() |
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| 383 | |
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| 384 | return |
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| 385 | |
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| 386 | # Cancel button |
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| 387 | def rejected(self): |
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| 388 | |
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| 389 | self.close() |
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| 390 | |
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| 391 | return |
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| 392 | |
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| 393 | |
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| 394 | # OK button |
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| 395 | def accept(self): |
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| 396 | |
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| 397 | global set_list |
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| 398 | |
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| 399 | text = self.list.toPlainText() |
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| 400 | set_list = text.split('\n') |
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| 401 | self.close() |
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| 402 | |
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| 403 | return |
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| 404 | |
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| 405 | # Main loop |
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| 406 | def main(): |
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| 407 | |
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| 408 | app = QtGui.QApplication(sys.argv) |
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| 409 | res = JobManager() |
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| 410 | sys.exit(app.exec_()) |
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| 411 | |
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| 412 | |
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| 413 | if __name__ == '__main__': |
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| 414 | main() |
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