[2825] | 1 | #!/usr/bin/env python |
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[2065] | 2 | # -*- coding: utf-8 -*- |
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| 3 | #--------------------------------------------------------------------------------# |
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[2696] | 4 | # This file is part of the PALM model system. |
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[2065] | 5 | # |
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| 6 | # PALM is free software: you can redistribute it and/or modify it under the terms |
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| 7 | # of the GNU General Public License as published by the Free Software Foundation, |
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| 8 | # either version 3 of the License, or (at your option) any later version. |
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| 9 | # |
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| 10 | # PALM is distributed in the hope that it will be useful, but WITHOUT ANY |
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| 11 | # WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR |
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| 12 | # A PARTICULAR PURPOSE. See the GNU General Public License for more details. |
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| 13 | # |
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| 14 | # You should have received a copy of the GNU General Public License along with |
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| 15 | # PALM. If not, see <http://www.gnu.org/licenses/>. |
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| 16 | # |
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[2718] | 17 | # Copyright 1997-2018 Leibniz Universitaet Hannover |
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[2484] | 18 | ##--------------------------------------------------------------------------------# |
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[2065] | 19 | # |
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| 20 | # Current revisions: |
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| 21 | # ----------------- |
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| 22 | # |
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[2068] | 23 | # |
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[2065] | 24 | # Former revisions: |
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| 25 | # ----------------- |
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| 26 | # $Id: palm_jm 4393 2020-02-04 21:24:48Z banzhafs $ |
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[4393] | 27 | # Removed PALM_BIN dependency |
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| 28 | # |
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| 29 | # 2825 2018-02-20 21:48:27Z maronga |
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[2825] | 30 | # Modified header |
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| 31 | # |
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| 32 | # 2718 2018-01-02 08:49:38Z maronga |
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[2716] | 33 | # Corrected "Former revisions" section |
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| 34 | # |
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| 35 | # 2696 2017-12-14 17:12:51Z kanani |
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| 36 | # Change in file header (GPL part) |
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| 37 | # |
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| 38 | # 2504 2017-09-27 10:36:13Z maronga |
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[2504] | 39 | # Bugfix: jobs were not loaded on start. |
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| 40 | # |
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| 41 | # 2484 2017-09-20 14:22:42Z maronga |
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[2484] | 42 | # Adapted for palmrun with USER_CODE always stored under /JOBS/name/USER_CODE/. |
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| 43 | # Added PALM logo |
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| 44 | # |
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| 45 | # 2068 2016-11-11 21:59:39Z maronga |
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[2065] | 46 | # |
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[2068] | 47 | # 2067 2016-11-11 21:55:49Z maronga |
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| 48 | # Minor bugfix: palm_jm can now be called from any location |
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| 49 | # |
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[2066] | 50 | # 2065 2016-11-11 12:25:10Z maronga |
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| 51 | # Initial revision |
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[2065] | 52 | # |
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[2066] | 53 | # |
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[2065] | 54 | # Description: |
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| 55 | # ------------ |
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| 56 | # PALM job manager works a file manager for PALM input files. It lists all jobs in |
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| 57 | # the working directory and displays associated input and user code files, which |
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| 58 | # can be opened directly from the interface. Also, it is possible to copy jobs and |
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| 59 | # to create entire new sets of jobs based on a reference job. |
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| 60 | # |
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| 61 | # Instructions: |
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| 62 | # ------------- |
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| 63 | # 1) Start palm_jm either from mrungui or from shell by "nohup palm_jm&" |
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| 64 | # |
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| 65 | # To do: |
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| 66 | # ------ |
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| 67 | # 1) Add display for the MONITORING and OUTPUT folder |
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| 68 | # 2) Add zip function to export single or multiple jobs |
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| 69 | # 3) Allow for copying INPUT files to a remote host |
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| 70 | #------------------------------------------------------------------------------! |
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| 71 | |
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| 72 | import os |
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| 73 | from PyQt4 import QtGui, QtCore, uic |
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| 74 | from PyQt4.QtCore import pyqtSlot,SIGNAL,SLOT |
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| 75 | import shutil |
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| 76 | import subprocess as sub |
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| 77 | import sys |
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| 78 | |
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| 79 | set_list = [] |
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| 80 | |
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| 81 | |
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[4393] | 82 | |
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[2065] | 83 | # Determine PALM directories |
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| 84 | try: |
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[4393] | 85 | devnull = open(os.devnull, 'w') |
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| 86 | palm_dir = os.getcwd() |
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| 87 | palm_bin = palm_dir + '/trunk/SCRIPTS' |
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[2065] | 88 | job_dir = palm_dir + '/JOBS' |
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| 89 | user_dir = palm_dir + '/USER_CODE' |
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[4393] | 90 | with open(palm_bin + '/palm_jm', 'r') as fh: |
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| 91 | # file found |
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| 92 | out = None |
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[2065] | 93 | except: |
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[4393] | 94 | print ('Error. palm_jm probably called in wrong directory.') |
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[2065] | 95 | raise SystemExit |
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| 96 | |
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| 97 | |
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| 98 | # MainWindow class |
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| 99 | class JobManager(QtGui.QMainWindow): |
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[4393] | 100 | |
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| 101 | |
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[2065] | 102 | def __init__(self): |
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[4393] | 103 | |
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[2065] | 104 | super(JobManager, self).__init__() |
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[4393] | 105 | |
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| 106 | self.InitUi() |
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| 107 | |
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[2065] | 108 | |
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| 109 | # Initialized MainWindow UI |
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| 110 | def InitUi(self): |
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| 111 | |
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[4393] | 112 | print(palm_bin + '/palm_jm_files/palm_jm.ui') |
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| 113 | |
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[2065] | 114 | # Load predefined mainwindow |
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[2067] | 115 | uic.loadUi(palm_bin + '/palm_jm_files/palm_jm.ui', self) |
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[2484] | 116 | |
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| 117 | self.palm_logo.setPixmap(QtGui.QPixmap(palm_dir + "/trunk/SCRIPTS/palmrungui_files/logo.png")) |
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| 118 | |
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[2065] | 119 | |
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| 120 | # Display MainWindow |
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| 121 | self.show() |
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[4393] | 122 | |
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[2065] | 123 | QtGui.QApplication.processEvents() |
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| 124 | |
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[4393] | 125 | |
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[2504] | 126 | self.load_jobs() |
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[2065] | 127 | |
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| 128 | def update_all(self): |
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| 129 | |
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| 130 | self.setEnabled(False) |
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| 131 | self.list_input.clear() |
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| 132 | self.list_user.clear() |
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| 133 | self.load_jobs() |
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| 134 | self.setEnabled(True) |
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| 135 | |
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| 136 | # Load jobs into list |
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| 137 | def load_jobs(self): |
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| 138 | |
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| 139 | self.list_jobs.clear() |
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| 140 | self.push_copy.setEnabled(False) |
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| 141 | self.push_create_set.setEnabled(False) |
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| 142 | |
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| 143 | self.line_path.setText(job_dir + "/") |
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| 144 | |
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| 145 | list_of_files = os.listdir(job_dir) |
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| 146 | |
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| 147 | for i in range(0,len(list_of_files)): |
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| 148 | tmp_file = job_dir + "/" + list_of_files[i] |
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| 149 | |
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| 150 | if ( os.path.isdir(tmp_file) ): |
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| 151 | self.list_jobs.addItem(str(list_of_files[i])) |
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| 152 | |
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| 153 | |
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| 154 | # Update input and user code lists |
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| 155 | def update_input(self): |
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| 156 | |
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| 157 | self.list_input.clear() |
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| 158 | self.list_user.clear() |
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| 159 | self.push_copy.setEnabled(True) |
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| 160 | self.push_create_set.setEnabled(True) |
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| 161 | |
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| 162 | job_to_show = job_dir + "/" + self.list_jobs.currentItem().text() + "/INPUT" |
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| 163 | |
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| 164 | if ( os.path.isdir(job_to_show) ): |
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| 165 | |
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| 166 | list_of_files = os.listdir(job_to_show) |
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| 167 | |
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| 168 | for i in range(0,len(list_of_files)): |
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| 169 | tmp_file = job_to_show + "/" + list_of_files[i] |
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| 170 | |
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| 171 | if ( os.path.isfile(tmp_file) ): |
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| 172 | self.list_input.addItem(str(list_of_files[i])) |
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| 173 | |
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[2484] | 174 | job_to_show = job_dir + "/" + self.list_jobs.currentItem().text() + "/USER_CODE" |
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[2065] | 175 | |
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| 176 | if ( os.path.isdir(job_to_show) ): |
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| 177 | |
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| 178 | list_of_files = os.listdir(job_to_show) |
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| 179 | |
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| 180 | for i in range(0,len(list_of_files)): |
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| 181 | tmp_file = job_to_show + "/" + list_of_files[i] |
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| 182 | |
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| 183 | if ( os.path.isfile(tmp_file) ): |
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| 184 | self.list_user.addItem(str(list_of_files[i])) |
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| 185 | |
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| 186 | |
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| 187 | # Make a copy of a job |
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| 188 | def copy_job(self): |
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| 189 | |
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| 190 | self.setEnabled(False) |
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| 191 | old_job_name = self.list_jobs.currentItem().text() |
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| 192 | |
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| 193 | text, ret = QtGui.QInputDialog.getText(self, "Copy job", "Enter new job name:", mode = QtGui.QLineEdit.Normal, text = old_job_name) |
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| 194 | |
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| 195 | if ( ret ): |
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| 196 | new_job_name = str(text) |
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| 197 | else: |
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| 198 | self.setEnabled(True) |
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| 199 | return |
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| 200 | |
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| 201 | new_input_dir = job_dir + "/" + new_job_name + "/INPUT" |
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| 202 | |
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| 203 | # check if a job exists with the new job name |
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| 204 | if ( os.path.isdir(new_input_dir) ): |
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| 205 | notify = QtGui.QMessageBox.warning(self,'Create new job directory',"Error. Could not create job directory. A job with the new name already exists.") |
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| 206 | self.setEnabled(True) |
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| 207 | return |
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| 208 | else: |
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| 209 | os.makedirs(new_input_dir) |
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| 210 | |
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| 211 | # copy and rename input files (if present) |
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| 212 | job_to_copy = job_dir + "/" + old_job_name + "/INPUT" |
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| 213 | |
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| 214 | if ( os.path.isdir(job_to_copy) ): |
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| 215 | |
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| 216 | list_of_files = os.listdir(job_to_copy) |
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| 217 | |
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| 218 | for i in range(0,len(list_of_files)): |
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| 219 | |
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| 220 | tmp_file = job_to_copy + "/" + list_of_files[i] |
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| 221 | new_file = new_input_dir + "/" + list_of_files[i].replace(old_job_name, new_job_name) |
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| 222 | shutil.copy(tmp_file, new_file) |
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| 223 | |
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| 224 | |
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[2484] | 225 | |
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| 226 | |
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| 227 | new_user_dir = job_dir + "/" + new_job_name + "/USER_CODE" |
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| 228 | |
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| 229 | # check if user code exists in the new job directory |
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| 230 | if ( os.path.isdir(new_user_dir) ): |
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| 231 | notify = QtGui.QMessageBox.warning(self,'Create new user code directory',"Error. Could not create user code directory. A user code directiory with the new name already exists.") |
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[2065] | 232 | self.setEnabled(True) |
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| 233 | return |
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| 234 | else: |
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[2484] | 235 | os.makedirs(new_user_dir) |
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[2065] | 236 | |
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| 237 | |
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[2484] | 238 | # copy user code files (if present) |
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| 239 | user_to_copy = job_dir + "/" + old_job_name + "/USER_CODE" |
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| 240 | |
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| 241 | if ( os.path.isdir(user_to_copy) ): |
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| 242 | |
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| 243 | list_of_files = os.listdir(user_to_copy) |
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[2065] | 244 | |
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| 245 | for i in range(0,len(list_of_files)): |
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| 246 | |
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[2484] | 247 | tmp_file = user_to_copy + "/" + list_of_files[i] |
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| 248 | new_file = new_user_dir + "/" + list_of_files[i] |
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[2065] | 249 | shutil.copy(tmp_file, new_file) |
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| 250 | |
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| 251 | self.load_jobs() |
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| 252 | self.list_input.clear() |
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| 253 | self.list_user.clear() |
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| 254 | self.setEnabled(True) |
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| 255 | |
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| 256 | |
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| 257 | # Create a whole set of jobs |
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| 258 | def create_set(self): |
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| 259 | |
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| 260 | global set_list |
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| 261 | # disable mainwindow |
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| 262 | self.setEnabled(False) |
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| 263 | |
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| 264 | # show Options Dialog |
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| 265 | opt = CreateSetBox() |
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| 266 | opt.exec_() |
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| 267 | |
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| 268 | old_job_name = self.list_jobs.currentItem().text() |
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| 269 | |
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| 270 | for j in range(0,len(set_list)): |
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| 271 | |
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| 272 | if ( set_list[j] != "" ): |
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| 273 | new_job_name = str(set_list[j]) |
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| 274 | new_input_dir = job_dir + "/" + str(set_list[j]) + "/INPUT" |
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| 275 | else: |
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| 276 | continue |
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| 277 | |
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| 278 | # check if a job exists with the new job name |
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| 279 | if ( os.path.isdir(new_input_dir) ): |
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| 280 | notify = QtGui.QMessageBox.warning(self,'Create new job directory',"Error. Could not create job directory. A job with the new name already exists.") |
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| 281 | self.setEnabled(True) |
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| 282 | return |
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| 283 | else: |
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| 284 | os.makedirs(new_input_dir) |
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| 285 | |
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| 286 | # copy and rename input files (if present) |
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| 287 | job_to_copy = job_dir + "/" + old_job_name + "/INPUT" |
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| 288 | |
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| 289 | if ( os.path.isdir(job_to_copy) ): |
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| 290 | |
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| 291 | list_of_files = os.listdir(job_to_copy) |
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| 292 | |
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| 293 | for i in range(0,len(list_of_files)): |
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| 294 | |
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| 295 | tmp_file = job_to_copy + "/" + list_of_files[i] |
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| 296 | new_file = new_input_dir + "/" + list_of_files[i].replace(old_job_name, new_job_name) |
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| 297 | shutil.copy(tmp_file, new_file) |
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| 298 | |
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| 299 | |
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[2484] | 300 | new_user_dir = job_dir + "/" + new_job_name + "/USER_CODE" |
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| 301 | |
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| 302 | # check if user code exists in the new job directory |
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| 303 | if ( os.path.isdir(new_user_dir) ): |
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| 304 | notify = QtGui.QMessageBox.warning(self,'Create new user code directory',"Error. Could not create user code directory. A user code directiory with the new name already exists.") |
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| 305 | self.setEnabled(True) |
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| 306 | return |
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[2065] | 307 | else: |
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[2484] | 308 | os.makedirs(new_user_dir) |
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[2065] | 309 | |
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| 310 | |
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[2484] | 311 | # copy user code files (if present) |
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| 312 | user_to_copy = job_dir + "/" + old_job_name + "/USER_CODE" |
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| 313 | |
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| 314 | if ( os.path.isdir(user_to_copy) ): |
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| 315 | |
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| 316 | list_of_files = os.listdir(user_to_copy) |
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[2065] | 317 | |
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| 318 | for i in range(0,len(list_of_files)): |
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| 319 | |
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[2484] | 320 | tmp_file = user_to_copy + "/" + list_of_files[i] |
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| 321 | new_file = new_user_dir + "/" + list_of_files[i] |
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[2065] | 322 | shutil.copy(tmp_file, new_file) |
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| 323 | |
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| 324 | self.load_jobs() |
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| 325 | self.list_input.clear() |
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| 326 | self.list_user.clear() |
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| 327 | |
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| 328 | self.setEnabled(True) |
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| 329 | |
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| 330 | |
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| 331 | # Add a custom context menu |
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| 332 | def openmenuinput(self, position): |
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| 333 | |
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| 334 | menu = QtGui.QMenu() |
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| 335 | |
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| 336 | selection = self.list_input.selectedItems() |
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| 337 | |
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| 338 | if ( len(selection) != 0 ): |
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| 339 | |
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| 340 | openAction = menu.addAction('Open selected files') |
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| 341 | openAction.setStatusTip('Open file(s) in your favorite editor') |
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| 342 | openAction.triggered.connect(self.OpenFilesInput) |
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| 343 | action = menu.exec_(self.list_input.mapToGlobal(position)) |
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| 344 | |
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| 345 | # Add a custom context menu |
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| 346 | def openmenuuser(self, position): |
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| 347 | |
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| 348 | menu = QtGui.QMenu() |
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| 349 | |
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| 350 | selection = self.list_user.selectedItems() |
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| 351 | |
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| 352 | if ( len(selection) != 0 ): |
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| 353 | |
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| 354 | openAction = menu.addAction('Open selected files') |
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| 355 | openAction.setStatusTip('Open file(s) in your favorite editor') |
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| 356 | openAction.triggered.connect(self.OpenFilesUser) |
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| 357 | action = menu.exec_(self.list_user.mapToGlobal(position)) |
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| 358 | |
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| 359 | |
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| 360 | def OpenFilesInput(self): |
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| 361 | |
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| 362 | sel_job = self.list_jobs.currentItem().text() |
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| 363 | sel_files = self.list_input.selectedItems() |
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| 364 | |
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| 365 | input_dir = job_dir + "/" + sel_job + "/INPUT/" |
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| 366 | |
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| 367 | open_files = "" |
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| 368 | for i in range(0,len(sel_files)): |
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| 369 | open_files = open_files + "xdg-open " + input_dir + sel_files[i].text() + "; " |
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| 370 | |
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| 371 | os.system(str(open_files)) |
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| 372 | |
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| 373 | def OpenFilesUser(self): |
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| 374 | |
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| 375 | sel_job = self.list_jobs.currentItem().text() |
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| 376 | sel_files = self.list_user.selectedItems() |
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| 377 | |
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[2484] | 378 | input_dir = job_dir + "/" + sel_job + "/USER_CODE/" |
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[2065] | 379 | |
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| 380 | open_files = "" |
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| 381 | for i in range(0,len(sel_files)): |
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| 382 | open_files = open_files + "xdg-open " + input_dir + sel_files[i].text() + "; " |
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| 383 | |
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| 384 | os.system(str(open_files)) |
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| 385 | selection = self.list_jobs.selectedItems() |
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| 386 | |
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| 387 | |
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| 388 | |
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| 389 | # Message box for showing RUN_CONTROL output |
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| 390 | class CreateSetBox(QtGui.QDialog): |
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| 391 | def __init__(self): |
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| 392 | |
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| 393 | super(CreateSetBox, self).__init__() |
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| 394 | |
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[2067] | 395 | uic.loadUi(palm_bin + '/palm_jm_files/palm_jm_create_set.ui', self) |
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[2065] | 396 | |
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| 397 | self.show() |
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| 398 | |
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| 399 | return |
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| 400 | |
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| 401 | # Cancel button |
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| 402 | def rejected(self): |
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| 403 | |
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| 404 | self.close() |
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| 405 | |
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| 406 | return |
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| 407 | |
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| 408 | |
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| 409 | # OK button |
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| 410 | def accept(self): |
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| 411 | |
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| 412 | global set_list |
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| 413 | |
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| 414 | text = self.list.toPlainText() |
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| 415 | set_list = text.split('\n') |
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| 416 | self.close() |
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| 417 | |
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| 418 | return |
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| 419 | |
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| 420 | # Main loop |
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| 421 | def main(): |
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| 422 | |
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| 423 | app = QtGui.QApplication(sys.argv) |
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| 424 | res = JobManager() |
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| 425 | sys.exit(app.exec_()) |
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| 426 | |
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| 427 | |
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| 428 | if __name__ == '__main__': |
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| 429 | main() |
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