[2065] | 1 | #!/usr/bin/python |
---|
| 2 | # -*- coding: utf-8 -*- |
---|
| 3 | #--------------------------------------------------------------------------------# |
---|
| 4 | # This file is part of PALM. |
---|
| 5 | # |
---|
| 6 | # PALM is free software: you can redistribute it and/or modify it under the terms |
---|
| 7 | # of the GNU General Public License as published by the Free Software Foundation, |
---|
| 8 | # either version 3 of the License, or (at your option) any later version. |
---|
| 9 | # |
---|
| 10 | # PALM is distributed in the hope that it will be useful, but WITHOUT ANY |
---|
| 11 | # WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR |
---|
| 12 | # A PARTICULAR PURPOSE. See the GNU General Public License for more details. |
---|
| 13 | # |
---|
| 14 | # You should have received a copy of the GNU General Public License along with |
---|
| 15 | # PALM. If not, see <http://www.gnu.org/licenses/>. |
---|
| 16 | # |
---|
| 17 | # Copyright 1997-2016 Leibniz Universitaet Hannover |
---|
| 18 | #--------------------------------------------------------------------------------# |
---|
| 19 | # |
---|
| 20 | # Current revisions: |
---|
| 21 | # ----------------- |
---|
| 22 | # |
---|
[2068] | 23 | # |
---|
[2065] | 24 | # Former revisions: |
---|
| 25 | # ----------------- |
---|
| 26 | # $Id: palm_jm 2068 2016-11-11 21:59:39Z hellstea $ |
---|
| 27 | # |
---|
[2068] | 28 | # 2067 2016-11-11 21:55:49Z maronga |
---|
| 29 | # Minor bugfix: palm_jm can now be called from any location |
---|
| 30 | # |
---|
[2066] | 31 | # 2065 2016-11-11 12:25:10Z maronga |
---|
| 32 | # Initial revision |
---|
[2065] | 33 | # |
---|
[2066] | 34 | # |
---|
[2065] | 35 | # Description: |
---|
| 36 | # ------------ |
---|
| 37 | # PALM job manager works a file manager for PALM input files. It lists all jobs in |
---|
| 38 | # the working directory and displays associated input and user code files, which |
---|
| 39 | # can be opened directly from the interface. Also, it is possible to copy jobs and |
---|
| 40 | # to create entire new sets of jobs based on a reference job. |
---|
| 41 | # |
---|
| 42 | # Instructions: |
---|
| 43 | # ------------- |
---|
| 44 | # 1) Start palm_jm either from mrungui or from shell by "nohup palm_jm&" |
---|
| 45 | # |
---|
| 46 | # To do: |
---|
| 47 | # ------ |
---|
| 48 | # 1) Add display for the MONITORING and OUTPUT folder |
---|
| 49 | # 2) Add zip function to export single or multiple jobs |
---|
| 50 | # 3) Allow for copying INPUT files to a remote host |
---|
| 51 | #------------------------------------------------------------------------------! |
---|
| 52 | |
---|
| 53 | import os |
---|
| 54 | from PyQt4 import QtGui, QtCore, uic |
---|
| 55 | from PyQt4.QtCore import pyqtSlot,SIGNAL,SLOT |
---|
| 56 | import shutil |
---|
| 57 | import subprocess as sub |
---|
| 58 | import sys |
---|
| 59 | |
---|
| 60 | set_list = [] |
---|
| 61 | |
---|
| 62 | |
---|
| 63 | # Determine PALM directories |
---|
| 64 | try: |
---|
| 65 | devnull = open(os.devnull, 'w') |
---|
| 66 | out = sub.check_output("echo $PALM_BIN", shell=True, stderr=sub.STDOUT) |
---|
| 67 | palm_bin = out.rstrip() |
---|
| 68 | palm_dir = out.split("palm")[0] + "palm/" + out.split("palm")[1].split("/")[1] |
---|
| 69 | out = None |
---|
| 70 | |
---|
| 71 | # remove this line on release |
---|
| 72 | # palm_dir = '/home/maronga/PUB/thinktank/maronga/job_manager' |
---|
| 73 | |
---|
| 74 | job_dir = palm_dir + '/JOBS' |
---|
| 75 | user_dir = palm_dir + '/USER_CODE' |
---|
| 76 | |
---|
| 77 | except: |
---|
| 78 | print "Error. $PALM_BIN is not set." |
---|
| 79 | raise SystemExit |
---|
| 80 | |
---|
| 81 | |
---|
| 82 | |
---|
| 83 | # MainWindow class |
---|
| 84 | class JobManager(QtGui.QMainWindow): |
---|
| 85 | |
---|
| 86 | def __init__(self): |
---|
| 87 | super(JobManager, self).__init__() |
---|
| 88 | |
---|
| 89 | self.InitUi() |
---|
| 90 | |
---|
| 91 | |
---|
| 92 | # Initialized MainWindow UI |
---|
| 93 | def InitUi(self): |
---|
| 94 | |
---|
| 95 | # Load predefined mainwindow |
---|
[2067] | 96 | uic.loadUi(palm_bin + '/palm_jm_files/palm_jm.ui', self) |
---|
[2065] | 97 | |
---|
| 98 | # Display MainWindow |
---|
| 99 | self.show() |
---|
| 100 | QtGui.QApplication.processEvents() |
---|
| 101 | |
---|
| 102 | self.load_jobs() |
---|
| 103 | |
---|
| 104 | |
---|
| 105 | def update_all(self): |
---|
| 106 | |
---|
| 107 | self.setEnabled(False) |
---|
| 108 | self.list_input.clear() |
---|
| 109 | self.list_user.clear() |
---|
| 110 | self.load_jobs() |
---|
| 111 | self.setEnabled(True) |
---|
| 112 | |
---|
| 113 | # Load jobs into list |
---|
| 114 | def load_jobs(self): |
---|
| 115 | |
---|
| 116 | self.list_jobs.clear() |
---|
| 117 | self.push_copy.setEnabled(False) |
---|
| 118 | self.push_create_set.setEnabled(False) |
---|
| 119 | |
---|
| 120 | self.line_path.setText(job_dir + "/") |
---|
| 121 | |
---|
| 122 | list_of_files = os.listdir(job_dir) |
---|
| 123 | |
---|
| 124 | for i in range(0,len(list_of_files)): |
---|
| 125 | tmp_file = job_dir + "/" + list_of_files[i] |
---|
| 126 | |
---|
| 127 | if ( os.path.isdir(tmp_file) ): |
---|
| 128 | self.list_jobs.addItem(str(list_of_files[i])) |
---|
| 129 | |
---|
| 130 | |
---|
| 131 | # Update input and user code lists |
---|
| 132 | def update_input(self): |
---|
| 133 | |
---|
| 134 | self.list_input.clear() |
---|
| 135 | self.list_user.clear() |
---|
| 136 | self.push_copy.setEnabled(True) |
---|
| 137 | self.push_create_set.setEnabled(True) |
---|
| 138 | |
---|
| 139 | job_to_show = job_dir + "/" + self.list_jobs.currentItem().text() + "/INPUT" |
---|
| 140 | |
---|
| 141 | if ( os.path.isdir(job_to_show) ): |
---|
| 142 | |
---|
| 143 | list_of_files = os.listdir(job_to_show) |
---|
| 144 | |
---|
| 145 | for i in range(0,len(list_of_files)): |
---|
| 146 | tmp_file = job_to_show + "/" + list_of_files[i] |
---|
| 147 | |
---|
| 148 | if ( os.path.isfile(tmp_file) ): |
---|
| 149 | self.list_input.addItem(str(list_of_files[i])) |
---|
| 150 | |
---|
| 151 | job_to_show = user_dir + "/" + self.list_jobs.currentItem().text() |
---|
| 152 | |
---|
| 153 | if ( os.path.isdir(job_to_show) ): |
---|
| 154 | |
---|
| 155 | list_of_files = os.listdir(job_to_show) |
---|
| 156 | |
---|
| 157 | for i in range(0,len(list_of_files)): |
---|
| 158 | tmp_file = job_to_show + "/" + list_of_files[i] |
---|
| 159 | |
---|
| 160 | if ( os.path.isfile(tmp_file) ): |
---|
| 161 | self.list_user.addItem(str(list_of_files[i])) |
---|
| 162 | |
---|
| 163 | |
---|
| 164 | # Make a copy of a job |
---|
| 165 | def copy_job(self): |
---|
| 166 | |
---|
| 167 | self.setEnabled(False) |
---|
| 168 | old_job_name = self.list_jobs.currentItem().text() |
---|
| 169 | |
---|
| 170 | text, ret = QtGui.QInputDialog.getText(self, "Copy job", "Enter new job name:", mode = QtGui.QLineEdit.Normal, text = old_job_name) |
---|
| 171 | |
---|
| 172 | if ( ret ): |
---|
| 173 | new_job_name = str(text) |
---|
| 174 | else: |
---|
| 175 | self.setEnabled(True) |
---|
| 176 | return |
---|
| 177 | |
---|
| 178 | new_input_dir = job_dir + "/" + new_job_name + "/INPUT" |
---|
| 179 | |
---|
| 180 | # check if a job exists with the new job name |
---|
| 181 | if ( os.path.isdir(new_input_dir) ): |
---|
| 182 | notify = QtGui.QMessageBox.warning(self,'Create new job directory',"Error. Could not create job directory. A job with the new name already exists.") |
---|
| 183 | self.setEnabled(True) |
---|
| 184 | return |
---|
| 185 | else: |
---|
| 186 | os.makedirs(new_input_dir) |
---|
| 187 | |
---|
| 188 | # copy and rename input files (if present) |
---|
| 189 | job_to_copy = job_dir + "/" + old_job_name + "/INPUT" |
---|
| 190 | |
---|
| 191 | if ( os.path.isdir(job_to_copy) ): |
---|
| 192 | |
---|
| 193 | list_of_files = os.listdir(job_to_copy) |
---|
| 194 | |
---|
| 195 | for i in range(0,len(list_of_files)): |
---|
| 196 | |
---|
| 197 | tmp_file = job_to_copy + "/" + list_of_files[i] |
---|
| 198 | new_file = new_input_dir + "/" + list_of_files[i].replace(old_job_name, new_job_name) |
---|
| 199 | shutil.copy(tmp_file, new_file) |
---|
| 200 | |
---|
| 201 | # copy and rename user code (if present) |
---|
| 202 | user_code_to_copy = user_dir + "/" + old_job_name |
---|
| 203 | new_user_code_dir = user_dir + "/" + new_job_name |
---|
| 204 | |
---|
| 205 | # check if a job exists with the new job name |
---|
| 206 | if ( os.path.isdir(new_user_code_dir) ): |
---|
| 207 | notify = QtGui.QMessageBox.warning(self,'Create new user code directory',"Error. Could not create user code directory. A user code directory with the new name already exists.") |
---|
| 208 | self.setEnabled(True) |
---|
| 209 | return |
---|
| 210 | else: |
---|
| 211 | os.makedirs(new_user_code_dir) |
---|
| 212 | |
---|
| 213 | if ( os.path.isdir(user_code_to_copy) ): |
---|
| 214 | |
---|
| 215 | list_of_files = os.listdir(user_code_to_copy) |
---|
| 216 | |
---|
| 217 | for i in range(0,len(list_of_files)): |
---|
| 218 | |
---|
| 219 | tmp_file = user_code_to_copy + "/" + list_of_files[i] |
---|
| 220 | new_file = new_user_code_dir + "/" + list_of_files[i] |
---|
| 221 | shutil.copy(tmp_file, new_file) |
---|
| 222 | |
---|
| 223 | self.load_jobs() |
---|
| 224 | self.list_input.clear() |
---|
| 225 | self.list_user.clear() |
---|
| 226 | self.setEnabled(True) |
---|
| 227 | |
---|
| 228 | |
---|
| 229 | # Create a whole set of jobs |
---|
| 230 | def create_set(self): |
---|
| 231 | |
---|
| 232 | global set_list |
---|
| 233 | # disable mainwindow |
---|
| 234 | self.setEnabled(False) |
---|
| 235 | |
---|
| 236 | # show Options Dialog |
---|
| 237 | opt = CreateSetBox() |
---|
| 238 | opt.exec_() |
---|
| 239 | |
---|
| 240 | old_job_name = self.list_jobs.currentItem().text() |
---|
| 241 | |
---|
| 242 | for j in range(0,len(set_list)): |
---|
| 243 | |
---|
| 244 | if ( set_list[j] != "" ): |
---|
| 245 | new_job_name = str(set_list[j]) |
---|
| 246 | new_input_dir = job_dir + "/" + str(set_list[j]) + "/INPUT" |
---|
| 247 | else: |
---|
| 248 | continue |
---|
| 249 | |
---|
| 250 | # check if a job exists with the new job name |
---|
| 251 | if ( os.path.isdir(new_input_dir) ): |
---|
| 252 | notify = QtGui.QMessageBox.warning(self,'Create new job directory',"Error. Could not create job directory. A job with the new name already exists.") |
---|
| 253 | self.setEnabled(True) |
---|
| 254 | return |
---|
| 255 | else: |
---|
| 256 | os.makedirs(new_input_dir) |
---|
| 257 | |
---|
| 258 | # copy and rename input files (if present) |
---|
| 259 | job_to_copy = job_dir + "/" + old_job_name + "/INPUT" |
---|
| 260 | |
---|
| 261 | if ( os.path.isdir(job_to_copy) ): |
---|
| 262 | |
---|
| 263 | list_of_files = os.listdir(job_to_copy) |
---|
| 264 | |
---|
| 265 | for i in range(0,len(list_of_files)): |
---|
| 266 | |
---|
| 267 | tmp_file = job_to_copy + "/" + list_of_files[i] |
---|
| 268 | new_file = new_input_dir + "/" + list_of_files[i].replace(old_job_name, new_job_name) |
---|
| 269 | shutil.copy(tmp_file, new_file) |
---|
| 270 | |
---|
| 271 | # copy and rename user code (if present) |
---|
| 272 | user_code_to_copy = user_dir + "/" + old_job_name |
---|
| 273 | new_user_code_dir = user_dir + "/" + new_job_name |
---|
| 274 | |
---|
| 275 | # check if a job exists with the new job name |
---|
| 276 | if ( os.path.isdir(new_user_code_dir) ): |
---|
| 277 | notify = QtGui.QMessageBox.warning(self,'Create new user code directory',"Error. Could not create user code directory. A user code directory with the new name already exists.") |
---|
| 278 | self.setEnabled(True) |
---|
| 279 | return |
---|
| 280 | else: |
---|
| 281 | os.makedirs(new_user_code_dir) |
---|
| 282 | |
---|
| 283 | if ( os.path.isdir(user_code_to_copy) ): |
---|
| 284 | |
---|
| 285 | list_of_files = os.listdir(user_code_to_copy) |
---|
| 286 | |
---|
| 287 | for i in range(0,len(list_of_files)): |
---|
| 288 | |
---|
| 289 | tmp_file = user_code_to_copy + "/" + list_of_files[i] |
---|
| 290 | new_file = new_user_code_dir + "/" + list_of_files[i] |
---|
| 291 | shutil.copy(tmp_file, new_file) |
---|
| 292 | |
---|
| 293 | self.load_jobs() |
---|
| 294 | self.list_input.clear() |
---|
| 295 | self.list_user.clear() |
---|
| 296 | |
---|
| 297 | self.setEnabled(True) |
---|
| 298 | |
---|
| 299 | |
---|
| 300 | # Add a custom context menu |
---|
| 301 | def openmenuinput(self, position): |
---|
| 302 | |
---|
| 303 | menu = QtGui.QMenu() |
---|
| 304 | |
---|
| 305 | selection = self.list_input.selectedItems() |
---|
| 306 | |
---|
| 307 | if ( len(selection) != 0 ): |
---|
| 308 | |
---|
| 309 | openAction = menu.addAction('Open selected files') |
---|
| 310 | openAction.setStatusTip('Open file(s) in your favorite editor') |
---|
| 311 | openAction.triggered.connect(self.OpenFilesInput) |
---|
| 312 | action = menu.exec_(self.list_input.mapToGlobal(position)) |
---|
| 313 | |
---|
| 314 | # Add a custom context menu |
---|
| 315 | def openmenuuser(self, position): |
---|
| 316 | |
---|
| 317 | menu = QtGui.QMenu() |
---|
| 318 | |
---|
| 319 | selection = self.list_user.selectedItems() |
---|
| 320 | |
---|
| 321 | if ( len(selection) != 0 ): |
---|
| 322 | |
---|
| 323 | openAction = menu.addAction('Open selected files') |
---|
| 324 | openAction.setStatusTip('Open file(s) in your favorite editor') |
---|
| 325 | openAction.triggered.connect(self.OpenFilesUser) |
---|
| 326 | action = menu.exec_(self.list_user.mapToGlobal(position)) |
---|
| 327 | |
---|
| 328 | |
---|
| 329 | def OpenFilesInput(self): |
---|
| 330 | |
---|
| 331 | sel_job = self.list_jobs.currentItem().text() |
---|
| 332 | sel_files = self.list_input.selectedItems() |
---|
| 333 | |
---|
| 334 | input_dir = job_dir + "/" + sel_job + "/INPUT/" |
---|
| 335 | |
---|
| 336 | open_files = "" |
---|
| 337 | for i in range(0,len(sel_files)): |
---|
| 338 | open_files = open_files + "xdg-open " + input_dir + sel_files[i].text() + "; " |
---|
| 339 | |
---|
| 340 | os.system(str(open_files)) |
---|
| 341 | |
---|
| 342 | def OpenFilesUser(self): |
---|
| 343 | |
---|
| 344 | sel_job = self.list_jobs.currentItem().text() |
---|
| 345 | sel_files = self.list_user.selectedItems() |
---|
| 346 | |
---|
| 347 | input_dir = user_dir + "/" + sel_job + "/" |
---|
| 348 | |
---|
| 349 | open_files = "" |
---|
| 350 | for i in range(0,len(sel_files)): |
---|
| 351 | open_files = open_files + "xdg-open " + input_dir + sel_files[i].text() + "; " |
---|
| 352 | |
---|
| 353 | os.system(str(open_files)) |
---|
| 354 | selection = self.list_jobs.selectedItems() |
---|
| 355 | |
---|
| 356 | |
---|
| 357 | |
---|
| 358 | # Message box for showing RUN_CONTROL output |
---|
| 359 | class CreateSetBox(QtGui.QDialog): |
---|
| 360 | def __init__(self): |
---|
| 361 | |
---|
| 362 | super(CreateSetBox, self).__init__() |
---|
| 363 | |
---|
[2067] | 364 | uic.loadUi(palm_bin + '/palm_jm_files/palm_jm_create_set.ui', self) |
---|
[2065] | 365 | |
---|
| 366 | self.show() |
---|
| 367 | |
---|
| 368 | return |
---|
| 369 | |
---|
| 370 | # Cancel button |
---|
| 371 | def rejected(self): |
---|
| 372 | |
---|
| 373 | self.close() |
---|
| 374 | |
---|
| 375 | return |
---|
| 376 | |
---|
| 377 | |
---|
| 378 | # OK button |
---|
| 379 | def accept(self): |
---|
| 380 | |
---|
| 381 | global set_list |
---|
| 382 | |
---|
| 383 | text = self.list.toPlainText() |
---|
| 384 | set_list = text.split('\n') |
---|
| 385 | self.close() |
---|
| 386 | |
---|
| 387 | return |
---|
| 388 | |
---|
| 389 | # Main loop |
---|
| 390 | def main(): |
---|
| 391 | |
---|
| 392 | app = QtGui.QApplication(sys.argv) |
---|
| 393 | res = JobManager() |
---|
| 394 | sys.exit(app.exec_()) |
---|
| 395 | |
---|
| 396 | |
---|
| 397 | if __name__ == '__main__': |
---|
| 398 | main() |
---|