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source: palm/trunk/SCRIPTS/mrun @ 837

Last change on this file since 837 was 837, checked in by raasch, 12 years ago
info for mrun-option -s updated
Property svn:keywords set to `Id Rev`
File size: 189.2 KB

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1	#!/bin/ksh
2	# mrun - script for running PALM jobs
3	# $Id: mrun 837 2012-02-22 13:56:47Z raasch $
4
5	# Procedure for interactive/batch PALM runs (initial runs and automatic
6	# restart runs)
7
8	# Last changes:
9	# 03/03/94 - Siggi - Entwicklungsbeginn
10	# 21/03/94 - Siggi - Entwicklungsabschluss (Version 1.0)
11	# 09/12/94 - Siggi - allexport unterbunden; statt dessen werden jetzt ein-
12	# zelne Variable exportiert. Dies ist noetig, weil an-
13	# sonsten irgendein Speicher ueberlaeuft und von mrun
14	# aufgerufene Programme (z.B. stageout) mit Fehlern
15	# abbrechen (too many arguments)
16	# 20/06/95 - Siggi - noclobber muss explizit abgeschaltet, da jetzt
17	# defaultmaessig im RRZN-Profile eingeschaltet
18	# 10/06/97 - Siggi - Zusaetzliche Option -C bei cpp, damit // nicht
19	# wegfallen
20	# 25/04/00 - Siggi - Version 1.5
21	# remote_addres und remote_user in return_addres bzw.
22	# return_username umbenannt, return_username wird dem
23	# mrun-Aufruf im Job ueber Option -U mitgegeben.
24	# Neue Variable remote_username, die beim interaktiven
25	# mrun-Aufruf zwingend ueber die neue Option -u oder
26	# in der Konfigurationsdatei angegeben werden muss.
27	# 08/02/01 - Siggi - Alle mrun-Meldungen ins englische uebersetzt,
28	# Version 1.7
29	# 05/05/02 - Siggi - Uebersetzungen mittels make-Mechanismus moeglich
30	# 21/11/02 - Siggi - ENV-Variable XLFRTEOPTS wird vor Ausfuehrung auf
31	# IBM gesetzt, um Record-Laenge der NAMELIST-Dateien,
32	# zu bestimmen; Praeprozessoroptionen haben nun alle
33	# die Form -Dtext=text, weil auf IBM sonst text durch
34	# die leere Zeichenkette ersetzt wird
35	# 01/08/03 - Siggi - Test of implementing dvrp+1PE on ibm
36	# 07/01/04 - Siggi - additional preprocessor directive for ibm included
37	# (-D$OMP=OMP) in order to avoid problems with
38	# OMP_NUM_THREADS
39	# 04/01/05 - Siggi - archiving on hanni and berni is done in separate
40	# tar files, one for each node used
41	# 07/01/04 - Siggi - old code for t3e, vpp and hpcs eliminated
42	# 09/01/05 - Siggi - workaround for getting the IP address on gfdl3
43	# 17/01/05 - Siggi - job for data transfer to local machine now within
44	# job class c1 (HLRN)
45	# 27/01/05 - Siggi - IP address workaround for gfdl3 removed
46	# 28/01/05 - Siggi - tar-filenames on $PERM (HLRN) now include the
47	# base filename and cycle number
48	# 16/02/05 - Gerald - hababai validated
49	# 14/03/05 - Siggi - abort on NEC after first runtime error (F_ERRCNT)
50	# 29/03/05 - Marcus - berni*-en0 validated
51	# 21/04/05 - Siggi - transfer-job-protocol for avs-data is no more stored
52	# 24/04/05 - Siggi - netcdf support on lcmuk
53	# 25/04/05 - Siggi - netcdf support on gfld3 (decalpha)
54	# 11/05/05 - Siggi - files with non-numeric extensions (.xxx after cycle
55	# number) can now be used within interactive runs
56	# 12/05/05 - Siggi - netcdf support on ibm
57	# 13/05/05 - Siggi - error in tar-filenames on $PERM (HLRN) removed
58	# 18/05/05 - Siggi - netcdf support on nec
59	# 24/05/05 - Siggi - netcdf support on ibms
60	# 14/06/05 - Siggi - sleep interval after submit of restart job increased
61	# to 30 seconds
62	# 28/06/05 - Siggi - bora adjusted to new intel compiler (LD_LIBRARY_
63	# PATH is temporarily set)
64	# 07/09/05 - Siggi - setting of MP_EAGER_LIMIT switched off because it
65	# caused warnings in the job protocol
66	# 20/10/05 - Siggi - update of netcdf-version on decalpha (gfdl3)
67	# 25/10/05 - Siggi - error in listing files for getting the cycle number
68	# removed
69	# 26/10/05 - Siggi - new paths for dvrp-library, transfer of catalogs
70	# realized by file attribute trpe
71	# 28/10/05 - Siggi - if existing, the file extension is output in case
72	# of missing input file - no job abort in case of
73	# missing input files with file extensions
74	# (preliminary solution)
75	# 31/10/05 - Siggi - data transfer from nech now within seperate job
76	# 04/11/05 - Siggi - netcdf 3.6.0-p1 on ibmh/ibmb
77	# 07/12/05 - Siggi - gallego and elephanta admitted
78	# 30/12/05 - Siggi - gfdl5 (ibmy) admitted
79	# 10/01/06 - Siggi - cpp directive for NetCDF 64bit support
80	# 20/01/06 - Siggi - cpp directive for ibmy
81	# 09/02/06 - Siggi - ibmy admitted for batch mode
82	# 13/04/06 - Siggi - ostria admitted
83	# 18/04/06 - Siggi - usage of OpenMP implemented (additional option -O)
84	# 10/05/06 - Siggi - environment variable XLSMPOPTS set on IBM for
85	# optimization of OpenMP runs (option stacksize is
86	# necessary for large gridpoint numbers because
87	# otherwise a segmentation fault occurs)
88	# 23/05/05 - Siggi - lctit (SUN Fire X4600) admitted
89	# 21/08/06 - Siggi - standard mrun path on scirocco is as on bora
90	# 23/08/06 - Siggi - netcdf support for scirocco (notebook)
91	# 20/09/06 - Marcus - add DVRP library on nech
92	# 24/10/06 - Siggi - Environment variables for PALM steering are written
93	# on local NAMELIST file ENVPAR
94	# 24/11/06 - Siggi - levanto admitted, maestro switched to ifc 9.1
95	# 28/11/06 - Siggi - call to interpret_config.x_levanto because of SuSe 10
96	# 06/02/07 - Siggi - add DVRP library on lcmuk
97	# 07/02/07 - Siggi - revision of source code handling, source code is
98	# now expected in directory given by source_path and
99	# not in the current working directory, source code
100	# files provided in add_source_path are allways
101	# compiled, source code to be compiled is allways
102	# sampled in SOURCES_FOR_RUN_$fname which is a
103	# subdirectory of the current working directory,
104	# -s TEST changed to -s WRITE_PERMIT or -s WP,
105	# adapted for RIAM (neck)
106	# bugfix for cycle number of output file (extout)
107	# all hpmuk-related code removed
108	# 14/02/07 - Siggi - dvrp support for neck added
109	# 28/02/07 - Siggi - empty lines in configuration file are accepted
110	# mrun_path replaced by PALM_BIN,
111	# all machines are calling interpret_config.x
112	# 14/03/07 - Siggi - fimm admitted, revision number added to terminal
113	# output
114	# 16/03/07 - Siggi - adjustments for lctit
115	# 29/03/07 - Siggi - global revision transfered to batch job by new
116	# option -G
117	# 30/03/07 - Siggi - compilation "by hand" removed, cpp-directives/options
118	# + netcdf/dvrp-options are read from configuration
119	# file, host identifier (local_host) is read from
120	# config file, code related to ftp filetransfer
121	# removed (incl. option -f)
122	# 19/06/07 - Siggi - time limit for cdata jobs increased
123	# 25/07/07 - Siggi - two sets of executables can be started on lcmuk,
124	# if new option -Y (coupling) is given,
125	# output of executables to aout_output removed,
126	# messages are immediately written to stdout instead
127	# 03/08/07 - Marcus - add XOPT="-X $numprocs" for lcfimm
128	# 09/08/07 - Marcus - workaround on lcfimm to propagate environment
129	# variables out to the nodes in coupled mode -disabled-
130	# 13/08/07 - Marcus - start local restart jobs per ssh on lcfimm
131	# 28/08/07 - Marcus - completely remove workaround on lcfimm to propagate
132	# environment variables out to the nodes in coupled mode
133	# 15/10/07 - Siggi - Preliminary adjustments for lctit, based on Jin's
134	# suggestions
135	# 19/10/07 - Marcus - further adjustments for lctit: add new optional
136	# argument -g group_number, admit all sla* node_usage
137	# queues
138	# 30/10/07 - Marcus - further adjustments for queues on lctit
139	# 14/02/08 - Bjoern - link of restart files with long file name possible
140	# 28/02/08 - Marcus - If environment variable link_local_output is set to
141	# true, mrun tries "ln -f" on local output and resorts
142	# to "cp" or "cp -r" on error
143	# 15/04/08 - Siggi - argument -c introduced to most of the subjob calls,
144	# which allows the user to choose his own job catalog
145	# by setting job_catalog in the configuration file
146	# (default is ~/job_queue),
147	# workaround for mpiexec with -env option,
148	# adjustments for lcxt4 (Bergen Center for Computational
149	# Science)
150	# 22/05/08 - Marcus - If environment variable link_local_input is set to
151	# true, mrun tries "ln -f" on local input and resorts
152	# to "cp" or "cp -r" on error
153	# 27/05/08 - Siggi - PATH is set to PALM_BIN everywhere (missing so far)
154	# 14/07/08 - Siggi - adjustments for lcsgih
155	# 08/08/08 - Marcus - typo removed in lcxt4 branch
156	# 17/09/08 - Siggi - restart mechanism adjusted for lcsgi
157	# 02/10/08 - BjornM - argument "-Y" modified, adjustments for coupled runs
158	# 21/10/08 - Siggi - bugfix for the case that -K has more than one
159	# argument
160	# 08/11/08 - Siggi - bugfix for depository path settings in configuration
161	# file
162	# 11/11/08 - Siggi - rules for using user code files changed: user
163	# code splitted into one file per subroutine,
164	# user can provide his/her own makefile, only
165	# default source-code filenames are allowed
166	# 14/11/08 - Siggi - cond1 and cond2 are part of the depository name
167	# 08/01/09 - Siggi - mpi module on sgi machines to be used can be set
168	# with environment variable mpilib
169	# 13/01/09 - Siggi - totalview on hice/bice can be used in debug mode
170	# using environment variable totalview
171	# 25/02/09 - Siggi - cputime-option (-t) is allowed to be omitted for
172	# interactive runs
173	# 05/03/09 - Siggi - adjustments for new NEC-SX9 at RIAM (necriam)
174	# 16/03/09 - Siggi - dvrp_lib, dvrp_inc replaced by dvr_lib, dvr_inc,
175	# dvr streaming server is automatically started using
176	# new variable dvr_server and a configuration file
177	# .dvrserver.config,
178	# processing of dvr output files using new script
179	# process_dvr_output implemented, in order to make
180	# dvr application more user friendly
181	# 20/03/09 - Marcus - update of n1ge command for lctit
182	# 16/04/09 - Siggi - new option -y for precursor (uncoupled) ocean runs
183	# to be followed by a coupled atmosphere-ocean run
184	# 21/04/09 - Siggi - adjustments for new IBM at DKRZ, which is now ibmh
185	# 24/06/09 - BjornM - adjustments for coupled/precursor runs on ibmy
186	# 08/07/09 - Siggi - default value for email_notification is none,
187	# option -e added to subjob
188	# 19/08/09 - Marcus - MPI debug option
189	# 21/08/09 - Marcus - totalview on hice/bice also available for mvapich2
190	# 25/08/09 - BjornM - adpated for lck
191	# 26/08/09 - Siggi - additional environment variables for mpt on ice2
192	# 26/08/09 - Marcus - adjustment for ice2 on lcsgib
193	# 29/09/09 - Siggi - default value for archiving is false, option "-A"
194	# switches on archiving, archiving on SGI-ICE enabled
195	# 16/10/09 - Carolin- adjustments for archiving on SGI-ICE of binary files;
196	# adjustment for special1q
197	# 18/12/09 - Carolin- modification of archiving (permq)
198	# 01/02/10 - Siggi - adapted for lcxt5m and lckyoto (Fujitsu HX600)
199	# 03/02/10 - Siggi - make options (mopts) to be set by configuration file
200	# implemented
201	# 08/02/10 - Siggi - loading of modules now controlled via configuration
202	# file (modules)
203	# 02/03/10 - Siggi - for each block in the configuration file, separate
204	# utility programs are used, combine_plot_fields is
205	# directly called and must not be given by an output
206	# command in the configuration file any more
207	# 15/06/10 - Rieke - ssh from compute nodes to login nodes on hosts
208	# lcsgih/lcsgib is done using the names
209	# hicegate0/bicegate0 instead of the IP addresses
210	# 17/08/10 - BjornM - adjustments for interactive runs on lcxt4
211	# 07/09/10 - Siggi - bugfix for wrong netcdf/3.6.3 module on lcsgi
212	# 08/12/10 - Siggi - new handling of openmp/hybrid runs, option -O
213	# has now argument threads_per_task
214	# adjustments for Kyushu Univ. (lcrte, ibmku)
215	# 14/12/10 - Siggi - adjustments for new Tsubame system at Tokyo
216	# institute of technology (lctit)
217	# 23/12/10 - Micha - different number of processors in ocean and
218	# atmosphere is now allowed
219	# 02/02/10 - Siggi - further adjustments on Tsubame and concerning openMP
220	# usage
221	# 09/03/10 - Siggi - adjustments for ibmkisti, mpt bugfix for netCDF4
222	# usage, totalview usage extended
223	# 17/03/11 - Siggi - adjustments for openmp usage on ibmkisti
224	# 03/04/11 - Micha - added lckordi
225	# 06/04/11 - BjornM - bugfix for runs with mpt on lcsgi
226	# 17/08/11 - Siggi - extensions for impi library
227	# 18/08/11 - Siggi - bugfix for local append of output files with suffix
228	# (.nc)
229	# 18/08/11 - Marcus - support for Linux OS with German locale
230	# - properly report hosts on general Linux clusters
231	# 29/08/11 - BjornW - adapted for lcflow (ForWind cluster in Oldenburg)
232	# 29/08/11 - Carolin- initiating restart-run: adjustment of the path at
233	# IMUK
234	# 15/09/11 - Siggi - new option -w tp set the maximum number of parallel
235	# io streams, option -T is obligatory from now on
236	# 25/01/12 - BjornM - a namelist file check prior to the model run has
237	# been implemented (check_namelist_files).
238	# New option -z can be used to skip the check
239	# 03/02/12 - BjornM - namelist file check temporary disabled
240	# until severel bugs are fixed
241	# 08/02/12 - BjornM - bugfixes: skipping namelist file check in case of
242	# restart runs. check is now possible with topography
243	# and the -v (silent) option is considered
244	# 14/02/12 - BjornM/- bugfix: removed slash in \$queue, changed default
245	# Farah queue for lcsgi to testq, since bigq is not
246	# available on ice1
247	# 16/02/12 - BjornM - bugfix: replaced $localhost by $host in the ENVPAR
248	# file, which is generated for the namelist file check
249	# 17/02/12 - Siggi - -z included in description of options (mrun ?)
250	# 22/02/12 - Siggi - -s info updated
251
252
253
254	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
255
256	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
257	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
258	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
259
260	AddFilenames=""
261	additional_conditions=""
262	add_source_path=""
263	afname=""
264	archive_save=true
265	archive_system=none
266	check_namelist_files=true
267	compiler_name=""
268	cond1=""
269	cond2=""
270	config_file=.mrun.config
271	coupled_dist=""
272	coupled_mode="mpi1"
273	cpp_opts=""
274	cpp_options=""
275	cpumax=0
276	cpurest=0
277	delete_temporary_catalog=true
278	do_batch=false
279	do_compile=true
280	do_remote=false
281	do_stagein=true
282	do_stageout=true
283	do_trace=false
284	email_notification="none"
285	exclude=""
286	executable=""
287	execution_error=false
288	fimm=false
289	fname=test
290	fromhost=""
291	global_revision=""
292	group_number=none
293	host=""
294	host_file=""
295	hp=""
296	ignore_archive_error=false
297	input_list=""
298	interpreted_config_file=""
299	job_catalog="~/job_queue"
300	job_on_file=""
301	keep_data_from_previous_run=false
302	link_local_input=false
303	link_local_output=false
304	localhost_realname=$(hostname)
305	local_compile=false
306	local_dvrserver_running=.FALSE.
307	locat=normal
308	mainprog=""
309	makefile=""
310	max_par_io_str=""
311	mc=$0
312	while [[ $(echo $mc \| grep -c "/") != 0 ]]
313	do
314	mc=`echo $mc \| cut -f2- -d"/"`
315	done
316	module_calls=""
317	mrun_script_name=$mc
318	netcdf_inc=""
319	netcdf_lib=""
320	netcdf_support=false
321	node_usage=default
322	numprocs=""
323	numprocs_atmos=0
324	numprocs_ocean=0
325	OOPT=""
326	openmp=false
327	output_list=""
328	package_list=""
329	punkte="..........................................................."
330	p3d_suffix=""
331	queue=none
332	read_from_config=""
333	restart_run=false
334	if [[ `hostname` = rte10 ]]
335	then
336	return_addres=133.5.185.60
337	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
338	elif [[ `hostname` = climate0 ]]
339	then
340	return_addres=165.132.26.68
341	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
342	else
343	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
344	fi
345	return_password=""
346	return_username=$LOGNAME
347	remotecall=false
348	remote_username=""
349	run_coupled_model=false
350	run_mode=""
351	scirocco=false
352	store_on_archive_system=false
353	striche=" ----------------------------------------------------------------------------"
354	silent=false
355	source_list=""
356	source_path=SOURCE
357	tasks_per_node=""
358	threads_per_task=1
359	tmpcreate=false
360	tmp_data_catalog=""
361	transfer_problems=false
362	usern=$LOGNAME
363	use_openmp=false
364	working_directory=`pwd`
365	TOPT=""
366	XOPT=""
367	zeit=$( date \| cut -c 12-19 )
368
369	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
370	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
371
372	typeset -R30 calltime
373	typeset -L20 spalte1
374	typeset -L40 spalte2
375	typeset -L60 spalte3
376	typeset -L35 string1=`date`
377	typeset -L12 string2=$usern
378	typeset -L12 string3=$localhost_realname
379	typeset -L12 string4
380	typeset -L12 string5
381	typeset -L30 version="MRUN 2.0 Rev$Rev: 837 $"
382
383
384
385	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
386	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
387
388	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
389	# EXPORTIERT WERDEN
390	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
391	export group_number input_list memory numprocs output_list queue run_mode
392
393
394
395	# FEHLERBEHANDLUNG
396	# BEI EXIT:
397	trap 'rm -rf $working_directory/tmp_mrun
398	if [[ $locat != localhost ]]
399	then
400	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
401	# then
402	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
403	#MRUN-calls on $localhost
404	#
405	#date and time user localhost remotehost termination mrun-command
406	#--------------------------------------------------------------------------------------------------------------------
407	#%STATEND%
408	# chmod 666 ${mrun_path}/statistik/mrun_statistik
409	# fi
410	#
411	# # EINTRAG IN DIE STATISTIK-DATEI
412	# string4=$host
413	# string5=$locat
414	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
415	# then
416	# if [[ $do_batch = true ]]
417	# then
418	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
419	# else
420	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
421	# fi
422	# fi
423	echo " " > /dev/null
424	fi
425
426	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
427	then
428
429	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
430	(( i = 0 ))
431	while (( i < iec ))
432	do
433	(( i = i + 1 ))
434	printf "\n *** Execution of ERROR-command:\n"
435	printf " >>> ${err_command[$i]}\n"
436	eval ${err_command[$i]}
437	done
438	if [[ -n $interpreted_config_file ]] then
439	rm -rf $interpreted_config_file
440	fi
441	if [[ -n .mrun_environment ]] then
442	rm -rf .mrun_environment
443	fi
444	if [[ $tmpcreate = true ]]
445	then
446	printf "\n *** Contents of \"$TEMPDIR\":\n"
447	ls -al; cd
448	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
449	fi
450	if [[ "$dvrserver_id" != "" ]]
451	then
452	echo "+++ killing dvrserver_id=$dvrserver_id"
453	kill $dvrserver_id
454	fi
455	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
456	then
457	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
458	fi
459	printf "\n\n+++ MRUN killed \n\n"
460	elif [[ $locat != control_c ]]
461	then
462	printf "\n\n --> all actions finished\n\n"
463	printf " Bye, bye $usern !!\n\n"
464	fi' exit
465
466
467	# BEI TERMINAL-BREAK:
468	trap 'rm -rf $working_directory/tmp_mrun
469	rm -rf $working_directory/tmp_check_namelist_files
470	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
471	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
472	then
473	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
474	fi
475	if [[ "$dvrserver_id" != "" ]]
476	then
477	echo "+++ killing dvrserver_id=$dvrserver_id"
478	kill $dvrserver_id
479	fi
480	printf "\n+++ MRUN killed by \"^C\" \n\n"
481	locat=control_c
482	exit
483	' 2
484
485
486	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
487	# BEEN SET
488	if [[ "$PALM_BIN" = "" ]]
489	then
490	printf "\n +++ environment variable PALM_BIN has not been set"
491	printf "\n please set it to the directory where the PALM scripts are located"
492	locat=palm_bin; exit
493	fi
494	export PATH=$PALM_BIN:$PATH
495
496
497
498	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
499	# FUER FOLGEJOBS BENOETIGT WIRD
500	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vw:xX:yY:z option
501	do
502	case $option in
503	(a) afname=$OPTARG;;
504	(A) store_on_archive_system=true; mc="$mc -A";;
505	(b) do_batch=true; mc="$mc -b";;
506	(B) delete_temporary_catalog=false; mc="$mc -B";;
507	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
508	(C) restart_run=true; mc="$mc -C";;
509	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
510	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
511	(F) job_on_file="-D"; mc="$mc -F";;
512	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
513	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
514	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
515	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
516	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
517	(I) ignore_archive_error=true; mc="$mc -I";;
518	(k) keep_data_from_previous_run=true; mc="$mc -k";;
519	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
520	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
521	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
522	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
523	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
524	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
525	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
526	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
527	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
528	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
529	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
530	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
531	(S) read_from_config=false; mc="$mc -S";;
532	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
533	(T) mrun_tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
534	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
535	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
536	(v) silent=true; mc="$mc -v";;
537	(w) max_par_io_str=$OPTARG; mc="$mc -w$OPTARG";;
538	(x) do_trace=true;set -x; mc="$mc -x";;
539	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
540	(y) ocean_file_appendix=true; mc="$mc -y";;
541	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
542	(z) check_namelist_files=false; mc="$mc -z";;
543	(\?) printf "\n +++ unknown option $OPTARG \n"
544	printf "\n --> type \"$0 ?\" for available options \n"
545	locat=parameter;exit;;
546	esac
547	done
548
549
550	# EVTL. POSITIONSPARAMETER EINLESEN
551	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
552	shift OPTIND-1
553
554
555	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
556	if [[ "$1" = "?" ]]
557	then
558	(printf "\n *** mrun can be called as follows:\n"
559	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. <modus>\n"
560	printf "\n Description of available options:\n"
561	printf "\n Option Description Default-Value"
562	printf "\n -a base name of input files equiv. -d"
563	printf "\n -A archiving when using file-attribute fl"
564	printf "\n -b batch-job on local machine ---"
565	printf "\n -B do not delete temporary directory at end ---"
566	printf "\n -c configuration file .mrun.config"
567	printf "\n -d base name of files attached to program test"
568	printf "\n -D preprocessor(cpp)-directives \"\" "
569	printf "\n -F create remote job file only ---"
570	printf "\n -h execution host $localhost_realname"
571	printf "\n -i INPUT control list \"\" "
572	printf "\n -I archiving errors of previous batch-jobs"
573	printf "\n will be ignored"
574	printf "\n -k keep data from previous run"
575	printf "\n -K additional conditions for controling"
576	printf "\n usage of conditional code and"
577	printf "\n env-variables in configuration file \"\" "
578	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
579	printf "\n -M Makefile name Makefile"
580	printf "\n -n node usage (shared/not_shared) depending on -h"
581	printf "\n -o OUTPUT control list \"\" "
582	printf "\n -O use OpenMP ---"
583	printf "\n -p software package list \"\" "
584	printf "\n -q queue \"$queue\" "
585	printf "\n -r run control list (combines -i -o) \"\" "
586	printf "\n -s filenames of routines to be compiled \"\" "
587	printf "\n must end with .f, .f90, .F, or .c !"
588	printf "\n use \"..\" for more than one file and wildcards"
589	printf "\n -s LM compiles all locally modified files"
590	printf "\n -S config file interpreted by shellscript ---"
591	printf "\n -t allowed cpu-time in seconds (batch) 0"
592	printf "\n -T tasks per node depending on -h"
593	printf "\n -u username on remote machine \"\" "
594	printf "\n -v no prompt for confirmation ---"
595	printf "\n -w maximum parallel io streams as given by -X"
596	printf "\n -x tracing of mrun for debug purposes ---"
597	printf "\n -X # of processors (on parallel machines) 1"
598	printf "\n -y add appendix \"_O\" to all local output"
599	printf "\n files (ocean precursor runs followed by"
600	printf "\n coupled atmosphere-ocean runs) ---"
601	printf "\n -Y run coupled model, \"#1 #2\" with"
602	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
603	printf "\n -z no parameter file check ---"
604	printf "\n "
605	printf "\n Possible values of positional parameter <modus>:"
606	printf "\n \"?\" - this outline \n\n") \| more
607	exit
608	elif [[ "$1" != "" ]]
609	then
610	printf "\n +++ positional parameter $1 unknown \n"
611	locat=parameter; exit
612	fi
613
614
615
616	# KURZE STARTMELDUNG
617	printf "\n*** $version "
618	printf "\n will be executed. Please wait ..."
619
620
621
622	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
623	if [[ ! -f $config_file ]]
624	then
625	printf "\n\n +++ configuration file: "
626	printf "\n $config_file"
627	printf "\n does not exist"
628	locat=connect; exit
629	fi
630
631
632	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
633	line=""
634	grep "%host_identifier" $config_file > tmp_mrun
635	while read line
636	do
637	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
638	then
639	HOSTNAME=`echo $line \| cut -d" " -s -f2`
640	host_identifier=`echo $line \| cut -d" " -s -f3`
641	if [[ $localhost_realname = $HOSTNAME ]]
642	then
643	localhost=$host_identifier
644	break
645	fi
646	fi
647	done < tmp_mrun
648
649	if [[ "$localhost" = "" ]]
650	then
651	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
652	printf "\n for local host \"$localhost_realname\"."
653	printf "\n Please add line"
654	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
655	printf "\n to the configuration file."
656	locat=localhost; exit
657	fi
658
659
660	# HOSTSPEZIFISCHE VARIABLEN SETZEN
661	case $localhost_realname in
662	(r1\|r2\|h01\|b01) archive_system=tivoli;;
663	(cs*) archive_system=ut;;
664	(fimm.bccs.uib.no) fimm=true;;
665	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
666	(scirocco) scirocco=true;;
667	esac
668
669
670
671	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
672	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
673	[[ "$afname" = "" ]] && afname=$fname
674
675
676	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
677	if [[ "$run_mode" != "" ]]
678	then
679	input_list="$input_list $run_mode"
680	output_list="$output_list $run_mode"
681	fi
682
683
684	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
685	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
686	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
687	# STARTET)
688	if [[ "$fromhost" = "" ]]
689	then
690	fromhost=$localhost
691	fi
692
693
694	# PRUEFEN, OB MRUN NUR TESTWEISE AUF DER LOKALEN MASCHINE KOMPILIEREN SOLL
695	if [[ "$source_list" = LOCAL_COMPILE_TEST ]]
696	then
697	source_list=TEST
698	local_compile=true
699	host=$localhost
700	fi
701
702
703	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
704	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
705	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
706	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
707	if [[ -n $host && "$host" != $localhost ]]
708	then
709	do_batch=true
710	do_remote=true
711	case $host in
712	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|nech\|necriam\|lckyoto\|lcsgib\|lcsgih\|unics\|lcxt4\|lcxt5m\|lck\|lckordi) true;;
713	(*) printf "\n"
714	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
715	printf "\n is not available"
716	locat=nqs; (( iec = 0 )); exit;;
717	esac
718	else
719	host=$localhost
720	fi
721
722
723	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
724	if [[ -n $additional_conditions ]]
725	then
726	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
727	cond1=`echo $additional_conditions \| cut -d" " -f1`
728	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
729	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
730	if [[ -n $dummy ]]
731	then
732	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
733	locat=options; exit
734	fi
735	block=_$cond1
736	[[ -n $cond2 ]] && block=${block}_$cond2
737	fi
738
739
740	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
741	if [[ $run_coupled_model = true ]]
742	then
743
744	if [[ -n $coupled_dist ]]
745	then
746
747	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
748	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
749
750	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
751	then
752
753	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
754	printf "\n PEs (total) : $numprocs"
755	printf "\n PEs (atmosphere): $numprocs_atmos"
756	printf "\n PEs (ocean) : $numprocs_ocean"
757	locat=coupling; exit
758
759	fi
760
761	else
762
763	(( numprocs_ocean = $numprocs / 2 ))
764	(( numprocs_atmos = $numprocs / 2 ))
765
766	fi
767	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
768
769	# GET coupled_mode FROM THE CONFIG FILE
770	line=""
771	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
772	while read line
773	do
774	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && ( $(echo $line \| cut -d" " -s -f4) = $cond1 \|\| $(echo $line \| cut -d" " -s -f4) = $cond2 ) ]]
775	then
776	coupled_mode="mpi2"
777	fi
778	done < tmp_mrun
779
780	fi
781
782
783	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
784	# ARCHIVIERUNG FEHLGESCHLAGEN IST
785	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
786	then
787	if [[ $ignore_archive_error = false ]]
788	then
789	printf "\n +++ data archiving of previous run failed"
790	printf "\n see directory \~/job_queue on remote machine"
791	locat=archive; exit
792	else
793	printf "\n +++ warning: data archiving in a previous run failed"
794	printf "\n MRUN continues, trying to get backup copy"
795	fi
796	fi
797
798
799
800	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
801	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
802	if [[ "$read_from_config" = false ]]
803	then
804
805	[[ $silent = false ]] && printf "\n Reading the configuration file... "
806	while read zeile
807	do
808	[[ $silent = false ]] && printf "."
809
810
811	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
812	# ERSETZEN
813	eval zeile=\"$zeile\"
814
815
816	# INTERPRETATION DER ZEILE
817	if [[ "$(echo $zeile)" = "" ]]
818	then
819	# LEERZEILE, KEINE AKTION
820	continue
821
822	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
823	then
824
825	# ZEILE IST KOMMENTARZEILE
826	true
827
828	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
829	then
830
831	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
832	zeile=$(echo $zeile \| cut -c2-)
833	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
834	var=`echo $zeile \| cut -d" " -f1`
835	value=`echo $zeile \| cut -d" " -s -f2`
836	for_host=`echo $zeile \| cut -d" " -s -f3`
837	for_cond1=`echo $zeile \| cut -d" " -s -f4`
838	for_cond2=`echo $zeile \| cut -d" " -s -f5`
839
840	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
841	then
842
843	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
844	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
845	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
846
847
848	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
849	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
850	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
851	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
852	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
853	# KONFIGURATIONSDATEI
854	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
855	then
856	eval $var=\$value
857
858	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
859	if [[ $do_trace = true ]]
860	then
861	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
862	fi
863	fi
864
865	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
866	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
867	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
868	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
869	if [[ $var = host ]]
870	then
871	if [[ -n $host && "$host" != $localhost ]]
872	then
873	do_batch=true
874	do_remote=true
875	case $host in
876	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxt4\|lcxt5m\|lck\|lckordi) true;;
877	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
878	printf "\n is not available"
879	locat=nqs; exit;;
880	esac
881	else
882	host=$localhost
883	fi
884	fi
885
886	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
887	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
888	# DEN PROGRAMMEN BENOETIGT WERDEN
889	export $var
890	fi
891
892
893
894
895	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
896	then
897
898	# ZEILE DEFINIERT ERROR-KOMMANDO
899	(( iec = iec + 1 ))
900	zeile=$(echo $zeile \| cut -c4-)
901	err_command[$iec]="$zeile"
902
903	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
904	then
905
906	# ZEILE DEFINIERT INPUT-KOMMANDO
907	(( iic = iic + 1 ))
908	zeile=$(echo $zeile \| cut -c4-)
909	in_command[$iic]="$zeile"
910
911	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
912	then
913
914	# ZEILE DEFINIERT OUTPUT-KOMMANDO
915	(( ioc = ioc + 1 ))
916	zeile=$(echo $zeile \| cut -c4-)
917	out_command[$ioc]="$zeile"
918
919	else
920
921	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
922	# s2a: in/out - Feld
923	# s2b: loc - Feld (optional)
924	# s2c: tr/ar - Feld (optional)
925	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
926	s1=`echo $zeile \| cut -d" " -f1`
927	s2=`echo $zeile \| cut -d" " -s -f2`
928	s2a=$(echo $s2 \| cut -d":" -f1)
929	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
930	then
931	s2b=""
932	s2c=""
933	else
934	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
935	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
936	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
937	fi
938	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
939	s3=`echo $zeile \| cut -d" " -f3`
940	s4=`echo $zeile \| cut -d" " -s -f4`
941	s5=`echo $zeile \| cut -d" " -s -f5`
942	s6=`echo $zeile \| cut -d" " -s -f6`
943
944
945	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
946	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
947	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
948	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
949	# HANDEN SEIN MUSS (D.H. s2b = loc)
950	IFSALT="$IFS"; IFS="$IFS:"
951	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
952	then
953	found=false
954	for actual in $input_list
955	do
956	for formal in $s3
957	do
958	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
959	done
960	done
961	if [[ $found = true ]]
962	then
963	(( iin = iin + 1 ))
964	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
965	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
966	extin[$iin]=$s6
967	fi
968	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
969	then
970	found=false
971	for actual in $output_list
972	do
973	for formal in $s3
974	do
975	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
976	done
977	done
978	if [[ $found = true ]]
979	then
980	(( iout = iout + 1 ))
981	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
982	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
983	fi
984	elif [[ "$s2a" != in && "$s2a" != out ]]
985	then
986	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
987	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
988	locat=connect; exit
989	fi
990	IFS="$IFSALT"
991	fi
992	done < $config_file
993
994	else
995
996
997	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
998	[[ $silent = false ]] && printf "..."
999	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
1000	export interpreted_config_file=.icf.$RANDOM
1001
1002
1003
1004	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
1005	# VERFUEGUNG STELLEN
1006	cat > .mrun_environment << %%END%%
1007	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
1008	config_file = '$config_file', do_remote = '$do_remote',
1009	do_trace = '$do_trace', host = '$host',
1010	input_list = '$input_list', icf = '$interpreted_config_file',
1011	localhost = '$localhost', output_list = '$output_list' /
1012
1013	%%END%%
1014
1015	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
1016	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
1017	mrun_memory=$memory
1018	mrun_group_number=$group_number
1019	mrun_cpumax=$cpumax
1020	mrun_numprocs=$numprocs
1021
1022	if [[ $localhost_realname = "sx-fep" ]]
1023	then
1024	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
1025	else
1026
1027	if [[ "$host" != $localhost ]]
1028	then
1029
1030	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
1031	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
1032	if [[ $? != 0 ]]
1033	then
1034	printf "\n\n +++ no interpret_config found"
1035	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
1036	locat=interpret_config; exit
1037	fi
1038	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
1039	$interpret_config_executable
1040
1041	else
1042
1043	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
1044	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
1045	then
1046	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
1047	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
1048	locat=interpret_config; exit
1049	else
1050	interpret_config${block}.x
1051	fi
1052
1053	fi
1054	fi
1055	rm .mrun_environment
1056
1057
1058	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
1059	chmod u+x $interpreted_config_file
1060	export PATH=$PATH:.
1061	. $interpreted_config_file
1062	rm $interpreted_config_file
1063
1064
1065	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
1066	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
1067	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
1068	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
1069	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
1070	[[ "$max_par_io_str" != "" ]] && maximum_parallel_io_streams=$max_par_io_str
1071	[[ "$mrun_tasks_per_node" != "" ]] && tasks_per_node=$mrun_tasks_per_node
1072
1073	fi
1074
1075
1076	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
1077	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
1078	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
1079	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
1080	if [[ "$SOURCES_COMPLETE" = "" ]]
1081	then
1082
1083	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
1084	# VEREINBART WURDE
1085	source_path=""
1086	line=""
1087	grep "%source_path" $config_file > tmp_mrun
1088	while read line
1089	do
1090	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1091	then
1092	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
1093	then
1094	global_source_path=`echo $line \| cut -d" " -f2`
1095	fi
1096	fi
1097	done < tmp_mrun
1098
1099	line=""
1100	found=false
1101	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
1102	while read line
1103	do
1104	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1105	then
1106	if [[ $found = true ]]
1107	then
1108	printf "\n\n +++ more than one source path found in configuration file"
1109	printf "\n for local host \"$localhost\" "
1110	locat=source_path; exit
1111	fi
1112	source_path=`echo $line \| cut -d" " -f2`
1113	found=true
1114	fi
1115	done < tmp_mrun
1116	rm tmp_mrun
1117
1118	if [[ "$source_path" = "" ]]
1119	then
1120	if [[ "$global_source_path" != "" ]]
1121	then
1122	source_path=$global_source_path
1123	else
1124	printf "\n\n +++ no source path found in configuration file"
1125	printf "\n for local host \"$localhost\" "
1126	locat=source_path; exit
1127	fi
1128	fi
1129	eval source_path=$source_path
1130
1131	if [[ ! -d $source_path ]]
1132	then
1133	printf "\n\n +++ source path \"$source_path\" on local host"
1134	printf "\n \"$localhost\" does not exist"
1135	locat=source_path; exit
1136	fi
1137
1138	fi
1139
1140
1141	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
1142	# DURCH OPTION -G MITGETEILT)
1143	if [[ "$global_revision" = "" && $host != "ibmkisti" ]]
1144	then
1145	global_revision=`svnversion $source_path 2>/dev/null`
1146	global_revision="Rev: $global_revision"
1147	fi
1148
1149
1150	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
1151	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
1152	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
1153	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
1154	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
1155	if [[ -n $host && "$host" != $localhost ]]
1156	then
1157	do_batch=true
1158	do_remote=true
1159	case $host in
1160	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxt4\|lcxt5m\|lck\|lckordi) true;;
1161	(*) printf "\n"
1162	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
1163	printf "\n is not available"
1164	locat=nqs; (( iec = 0 )); exit;;
1165	esac
1166	else
1167	host=$localhost
1168	fi
1169
1170
1171	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
1172	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1173	then
1174
1175	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
1176	if [[ ! -n $numprocs ]]
1177	then
1178	printf "\n"
1179	printf "\n +++ option \"-K parallel\" requires additional specification"
1180	printf "\n of the number of processors to be used by"
1181	printf "\n mrun-option \"-X\" or by environment-variable"
1182	printf "\n \"numprocs\" in the configuration file"
1183	locat=numprocs; (( iec = 0 )); exit
1184	fi
1185
1186	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
1187	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
1188	# GESAMTPROZESSORANZAHL IST
1189	if [[ "$tasks_per_node" = "" ]]
1190	then
1191	printf "\n"
1192	printf "\n +++ option \"-T\" (tasks per node) is missing"
1193	printf "\n set -T option or define tasks_per_node in the config file"
1194	locat=tasks_per_node; (( iec = 0 )); exit
1195	fi
1196	(( ival = $tasks_per_node ))
1197	(( pes = numprocs ))
1198	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1199	# then
1200	# (( pes = pes - 1 ))
1201	# fi
1202	(( ii = pes / ival ))
1203	if (( pes - ii * ival > 0 ))
1204	then
1205	printf "\n"
1206	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1207	printf "\n divisor of the total number of processors (option \"-X\")"
1208	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1209	locat=tasks_per_node; (( iec = 0 )); exit
1210	fi
1211
1212
1213	# IBMY HAT NUR EINEN KNOTEN
1214	if [[ $host = ibmy ]]
1215	then
1216	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1217	then
1218	printf "\n"
1219	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1220	printf "\n total number of processors (option \"-X\")"
1221	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1222	locat=tasks_per_node; (( iec = 0 )); exit
1223	fi
1224	fi
1225
1226
1227	# SETTINGS FOR SUBJOB-COMMAND
1228	TOPT="-T $tasks_per_node"
1229	OOPT="-O $threads_per_task"
1230
1231	# GESAMTZAHL DER KNOTEN BESTIMMEN
1232	if [[ "$tasks_per_node" != "" ]]
1233	then
1234	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1235	fi
1236
1237	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1238	# SETZEN
1239	if [[ $node_usage = default ]]
1240	then
1241	if [[ $host = ibms ]]
1242	then
1243	node_usage=shared
1244	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1245	then
1246	node_usage=singlejob
1247	else
1248	node_usage=not_shared
1249	fi
1250	fi
1251
1252	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
1253	then
1254	printf "\n"
1255	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1256	printf "\n \"shared\" or \"not_shared\""
1257	locat=tasks_per_node; (( iec = 0 )); exit
1258	fi
1259
1260	fi
1261
1262	# PRUEFEN, OB HOSTFILE EXISTIERT
1263	if [[ -n $hostfile ]]
1264	then
1265	if [[ ! -f $hostfile ]]
1266	then
1267	printf "\n"
1268	printf "\n +++ hostfile \"$hostfile\" does not exist"
1269	locat=hostfile; exit
1270	fi
1271	fi
1272
1273	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1274	if [[ $host = ibmy && $do_remote = false ]]
1275	then
1276	if [[ ! -f $HOME/.rhosts ]]
1277	then
1278	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1279	printf "\n\n *** file:"
1280	printf "\n $HOME/.rhosts"
1281	printf "\n was created\n"
1282	fi
1283	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1284	then
1285	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1286	printf "\n\n *** file:"
1287	printf "\n $HOME/.rhosts"
1288	printf "\n was extended by the name of the current host\n"
1289	fi
1290	fi
1291
1292
1293	# Set default value for the maximum number of parallel io streams
1294	if [[ "$maximum_parallel_io_streams" = "" ]]
1295	then
1296	maximum_parallel_io_streams=$numprocs
1297	fi
1298
1299
1300	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1301	if [[ $queue = none ]]
1302	then
1303	case $host in
1304	(ibmh) queue=no_class;;
1305	(ibmkisti) queue=class.32plus;;
1306	(ibmy) queue=parallel;;
1307	(lckyoto) queue=ph;;
1308	(lcsgib) queue=testq;;
1309	(lcsgih) queue=testq;;
1310	(lctit) queue=S;;
1311	(nech) queue=none;;
1312	(necriam) queue=SP;;
1313	(unics) queue=unics;;
1314	esac
1315	fi
1316
1317
1318	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1319	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1320	# ERMITTELN
1321	(( i = 0 ))
1322	while (( i < iin ))
1323	do
1324	(( i = i + 1 ))
1325	(( maxcycle = 0 ))
1326
1327	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1328	if [[ "${actionin[$i]}" = di ]]
1329	then
1330	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1331	# REM-MASCHINE AUSWERTEN
1332	eval filename=${pathin[$i]}/${endin[$i]}
1333	else
1334	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1335	# REM-MASCHINE AUSWERTEN
1336	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1337	fi
1338
1339	# PRUEFEN AUF VORHANDENSEIN
1340	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1341	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1342	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1343	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1344	then
1345	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1346	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1347	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1348	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1349	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1350	if [[ "${transin[$i]}" != "locopt" ]]
1351	then
1352	printf "\n\n +++ INPUT-file: "
1353	if [[ "${extin[$i]}" = "" ]]
1354	then
1355	printf "\n $filename"
1356	else
1357	printf "\n $filename.${extin[$i]}"
1358	fi
1359	printf "\n does not exist\n"
1360	locat=input; exit
1361	else
1362	transin[$i]="unavailable"
1363	fi
1364	else
1365
1366	# ZYKLUSNUMMER FESTSTELLEN
1367	ls -1 -d $filename > filelist 2>/dev/null
1368	ls -1 -d $filename.* >> filelist 2>/dev/null
1369	while read zeile
1370	do
1371	cycle=$(print $zeile \| cut -f2 -d".")
1372	if [[ "$cycle" = "$zeile" ]]
1373	then
1374	(( icycle = 0 ))
1375	elif [[ "$cycle" = "${extin[$i]}" ]]
1376	then
1377	(( icycle = 0 ))
1378	else
1379	(( icycle = $cycle ))
1380	fi
1381	if (( icycle > maxcycle ))
1382	then
1383	(( maxcycle = icycle ))
1384	file_to_be_used=$zeile
1385	fi
1386	done <filelist
1387	rm filelist
1388
1389	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1390	if (( maxcycle > 0 ))
1391	then
1392	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1393	then
1394	filename=${filename}.$maxcycle.${extin[$i]}
1395	else
1396	filename=${filename}.$maxcycle
1397	fi
1398	else
1399	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1400	then
1401	filename=${filename}.${extin[$i]}
1402	fi
1403	fi
1404
1405	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1406	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1407	absnamein[$i]=$filename
1408	if (( maxcycle > 0 ))
1409	then
1410	if [[ "${actionin[$i]}" = di ]]
1411	then
1412	frelin[$i]=${endin[$i]}.$maxcycle
1413	else
1414	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1415	fi
1416	else
1417	if [[ "${actionin[$i]}" = di ]]
1418	then
1419	frelin[$i]=${endin[$i]}
1420	else
1421	frelin[$i]=${afname}${endin[$i]}
1422	fi
1423	fi
1424
1425	fi
1426	done
1427
1428
1429	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1430	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1431	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1432	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1433	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1434	(( i = 0 ))
1435	while (( i < iout ))
1436	do
1437	(( i = i + 1 ))
1438	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1439	then
1440	if [[ "${actionout[$i]}" = tr ]]
1441	then
1442	actionout[$i]=""
1443	elif [[ "${actionout[$i]}" = trpe ]]
1444	then
1445	actionout[$i]=pe
1446	elif [[ "${actionout[$i]}" = tra ]]
1447	then
1448	actionout[$i]=a
1449	fi
1450	(( maxcycle = 0 ))
1451	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1452	eval catalogname=${pathout[$i]}
1453	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1454	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1455	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1456	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1457	then
1458
1459	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1460	if cat /dev/null > $filename
1461	then
1462	rm $filename
1463	else
1464
1465	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1466	if [[ ! -d $catalogname ]]
1467	then
1468	if mkdir -p $catalogname
1469	then
1470	printf "\n\n *** directory:"
1471	printf "\n $catalogname"
1472	printf "\n was created\n"
1473	else
1474	printf "\n\n +++ OUTPUT-file:"
1475	printf "\n $filename"
1476	printf "\n cannot be created, because directory does not exist"
1477	printf "\n and cannot be created either"
1478	printf "\n"
1479	locat=output ; exit
1480	fi 2>/dev/null
1481	else
1482	printf "\n\n +++ OUTPUT-file:"
1483	printf "\n $filename"
1484	printf "\n cannot be created, although directory exists"
1485	printf "\n"
1486	locat=output ; exit
1487	fi
1488	fi 2>/dev/null
1489	else
1490
1491	# ZYKLUSNUMMER FESTSTELLEN
1492	ls -1 -d $filename > filelist 2>/dev/null
1493	ls -1 -d $filename.* >> filelist 2>/dev/null
1494	while read zeile
1495	do
1496	cycle=$(print $zeile \| cut -f2 -d".")
1497	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1498	then
1499	(( icycle = 1 ))
1500	else
1501	(( icycle = $cycle + 1 ))
1502	fi
1503	if (( icycle > maxcycle ))
1504	then
1505	(( maxcycle = icycle ))
1506	fi
1507	done <filelist
1508	rm filelist
1509	fi
1510
1511	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1512	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1513	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1514	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1515	if [[ "${actionout[$i]}" != a ]]
1516	then
1517	if (( maxcycle > 0 ))
1518	then
1519	filename=${filename}.$maxcycle
1520	if cat /dev/null > $filename
1521	then
1522	rm $filename
1523	else
1524	printf "\n +++ OUTPUT-file:"
1525	printf "\n $filename"
1526	printf "\n cannot be created"
1527	locat=output ; exit
1528	fi
1529	fi
1530	else
1531	(( maxcycle = maxcycle - 1 ))
1532	if (( maxcycle > 0 ))
1533	then
1534	filename=${filename}.$maxcycle
1535	fi
1536	fi
1537
1538	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1539	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1540	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1541	pathout[$i]=$filename
1542	if (( maxcycle > 0 ))
1543	then
1544	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1545	else
1546	frelout[$i]=${fname}${endout[$i]}
1547	fi
1548
1549	fi
1550	done
1551
1552
1553	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1554	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1555	then
1556	if [[ "$dvr_inc" = "" ]]
1557	then
1558	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1559	printf "\n This is required for the dvrp_graphics package.\n"
1560	locat=dvr; exit
1561	fi
1562	if [[ "$dvr_lib" = "" ]]
1563	then
1564	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1565	printf "\n This is required for the dvrp_graphics package.\n"
1566	locat=dvr; exit
1567	fi
1568	fi
1569
1570
1571	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1572	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1573	# UEBERSETZT ZU WERDEN)
1574	if [[ "$mainprog" = "" && "$executable" = "" ]]
1575	then
1576	printf "\n +++ neither main program nor executable defined"
1577	locat=source; exit
1578	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1579	then
1580	printf "\n +++ main program as well as executable defined"
1581	locat=source; exit
1582	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1583	then
1584	do_compile=false
1585	fi
1586
1587
1588	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1589	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1590	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1591	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1592	then
1593	rm -rf SOURCES_FOR_RUN_$fname
1594	mkdir SOURCES_FOR_RUN_$fname
1595	fi
1596
1597
1598	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1599	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1600	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1601	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1602	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1603	then
1604
1605	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1606	[[ "$source_list" = WP ]] && source_list=WRITE_PERMIT
1607
1608
1609	# EVTL. ZU UEBERSETZENDE PROGRAMMTEILE DADURCH BESTIMMEN, DASS GEPRUEFT
1610	# WIRD, WELCHE DATEIEN WRITE-PERMIT BESITZEN (DATEIEN SOLLTEN DESHALB
1611	# UNTER RCS-KONTROLLE STEHEN). MIT DER VARIABLEN EXCLUDE KOENNEN
1612	# BESTIMMTE DATEIEN GRUNDSAETZLICH VON DER UEBERSETZUNG AUSGESCHLOSSEN
1613	# WERDEN. DIES IST NUR BEI MANUELLEM START VON MRUN DURCH DEN BENUTZER
1614	# MOEGLICH, DA BEI AUTOMATISCHEN RESTARTS TEST DURCH DIE TATSAECHLICH
1615	# ZU UBERSETZENDEN DATEIEN ERSETZT IST.
1616	# ALLE ERMITTELTEN DATEIEN WERDEN IM VERZEICHNIS SOURCES_FOR_RUN_...
1617	# GESAMMELT
1618	if [[ "$source_list" = WRITE_PERMIT ]]
1619	then
1620
1621	source_list=""
1622	cd $source_path
1623
1624
1625	# ALLE MOEGLICHEN QUELLCODEDATEIEN AUFLISTEN
1626	Names=$(ls -1 *.f90 2>&1)
1627	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && Filenames="$Names"
1628	Names=$(ls -1 *.F90 2>&1)
1629	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && Filenames="$Filenames $Names"
1630	Names=$(ls -1 *.F 2>&1)
1631	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && Filenames="$Filenames $Names"
1632	Names=$(ls -1 *.f 2>&1)
1633	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && Filenames="$Filenames $Names"
1634	Names=$(ls -1 *.c 2>&1)
1635	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && Filenames="$Filenames $Names"
1636
1637
1638	# DATEIEN MIT WRITE-PERMIT NACH SOURCES_FOR_RUN_... KOPIEREN
1639	for dateiname in $Filenames
1640	do
1641	if [[ -w $dateiname ]]
1642	then
1643	if [[ "$exclude" = "" \|\| $(echo $exclude \| grep -c $dateiname) = 0 ]]
1644	then
1645	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1646	source_list=$source_list"$dateiname "
1647	fi
1648	fi
1649	done
1650
1651	cd - > /dev/null
1652
1653
1654	elif [[ "$source_list" = LOCALLY_MODIFIED ]]
1655	then
1656
1657	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1658	source_list=""
1659	cd $source_path
1660
1661
1662	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1663	if [[ ! -d .svn ]]
1664	then
1665	printf "\n\n +++ source directory"
1666	printf "\n \"$source_path\" "
1667	printf "\n is not under control of \"subversion\"."
1668	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1669	fi
1670
1671
1672	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1673	Filenames=""
1674	svn status > tmp_mrun
1675	while read line
1676	do
1677	firstc=`echo $line \| cut -c1`
1678	if [[ $firstc = M \|\| $firstc = "?" ]]
1679	then
1680	Name=`echo "$line" \| cut -c8-`
1681	extension=`echo $Name \| cut -d. -f2`
1682	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1683	then
1684	Filenames="$Filenames "$Name
1685	fi
1686	fi
1687	done < tmp_mrun
1688
1689
1690	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1691	for dateiname in $Filenames
1692	do
1693	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1694	source_list=$source_list"$dateiname "
1695	done
1696
1697	cd - > /dev/null
1698
1699
1700	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1701	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1702	# VORHANDEN
1703	elif [[ "$source_list" != "" && $restart_run != true ]]
1704	then
1705
1706	cd $source_path
1707
1708	for filename in $source_list
1709	do
1710
1711	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1712	if [[ $(print $filename \| grep -c "/") != 0 ]]
1713	then
1714	printf "\n +++ source code file: $filename"
1715	printf "\n must not contain (\"/\") "
1716	locat=source; exit
1717	fi
1718
1719	if [[ ! -f $filename ]]
1720	then
1721	printf "\n +++ source code file: $filename"
1722	printf "\n does not exist"
1723	locat=source; exit
1724	else
1725	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1726	fi
1727
1728	done
1729
1730	cd - > /dev/null
1731
1732	fi
1733
1734
1735	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1736	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1737	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1738	if [[ $restart_run != true ]]
1739	then
1740
1741	if [[ ! -f "$source_path/$mainprog" ]]
1742	then
1743	printf "\n\n +++ main program: $mainprog"
1744	printf "\n does not exist in source directory"
1745	printf "\n \"$source_path\"\n"
1746	locat=source; exit
1747	else
1748	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1749	then
1750	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1751	source_list=${mainprog}" $source_list"
1752	fi
1753	fi
1754	fi
1755
1756
1757	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1758	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1759	if [[ "$restart_run" != true ]]
1760	then
1761	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1762	if [[ ! -f $makefile ]]
1763	then
1764	printf "\n +++ file \"$makefile\" does not exist"
1765	locat=make; exit
1766	else
1767	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1768	fi
1769	fi
1770
1771
1772	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1773	if [[ $restart_run != true && "$add_source_path" != "" ]]
1774	then
1775
1776	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1777	if [[ ! -d $add_source_path ]]
1778	then
1779	printf "\n\n +++ WARNING: additional source code directory"
1780	printf "\n \"$add_source_path\" "
1781	printf "\n does not exist or is not a directory."
1782	printf "\n No source code will be used from this directory!\n"
1783	add_source_path=""
1784	sleep 3
1785	else
1786
1787	cd $add_source_path
1788	found=false
1789
1790	Names=$(ls -1 *.f90 2>&1)
1791	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1792	Names=$(ls -1 *.F90 2>&1)
1793	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1794	Names=$(ls -1 *.F 2>&1)
1795	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1796	Names=$(ls -1 *.f 2>&1)
1797	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1798	Names=$(ls -1 *.c 2>&1)
1799	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1800
1801	cd - > /dev/null
1802	cd SOURCES_FOR_RUN_$fname
1803
1804	# COPY MAKEFILE IF EXISTING
1805	if [[ -f $add_source_path/Makefile ]]
1806	then
1807	printf "\n\n *** user Makefile from directory"
1808	printf "\n \"$add_source_path\" is used \n"
1809	sleep 1
1810	cp $add_source_path/Makefile .
1811	fi
1812
1813	for dateiname in $AddFilenames
1814	do
1815	if [[ -f $dateiname ]]
1816	then
1817	printf "\n +++ source code file \"$dateiname\" found in additional"
1818	printf "\n source code directory \"$add_source_path\" "
1819	printf "\n but was also given with option \"-s\" which means that it should be taken"
1820	printf "\n from directory \"$source_path\"."
1821	locat=source; exit
1822	fi
1823
1824	cp $add_source_path/$dateiname .
1825	source_list="$source_list $dateiname"
1826
1827	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1828	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1829	then
1830	printf "\n\n +++ user file \"$dateiname\" "
1831	printf "\n is not listed in Makefile \n"
1832	locat=source; exit
1833	else
1834
1835	# Default User-Interface von der Liste entfernen, falls Datei
1836	# ein User-Interface enthaelt
1837	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1838	# then
1839	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1840	# then
1841	# rm -rf user_interface.f90
1842	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1843	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1844	# printf "\n since a user-interface is found in file"
1845	# printf "\n \"$add_source_path/$dateiname\" \n"
1846	# sleep 3
1847	# else
1848	if [[ $found = false ]]
1849	then
1850	found=true
1851	printf "\n\n *** following user file(s) added to the"
1852	printf " files to be translated:\n "
1853	fi
1854	printf "$dateiname "
1855	sleep 0.5
1856	fi
1857	done
1858	[[ $found = true ]] && printf "\n"
1859	cd - > /dev/null
1860	fi
1861	fi
1862
1863
1864	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1865	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1866	if [[ $restart_run != true && -n $package_list ]]
1867	then
1868
1869	cd $source_path
1870
1871	for package in $package_list
1872	do
1873
1874	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1875
1876	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1877	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1878	# LIEFERT
1879	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1880
1881
1882	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1883	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1884	for source_list_name in $package_source_list
1885	do
1886	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1887	then
1888
1889	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1890	ending=`echo $source_list_name \| cut -f2 -d.`
1891	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1892	then
1893	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1894	source_list="$source_list $source_list_name"
1895	fi
1896	fi
1897	done
1898	done
1899
1900	cd - > /dev/null
1901	fi
1902
1903
1904	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1905	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1906	# if [[ "$restart_run" != true ]]
1907	# then
1908	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1909	# if [[ ! -f $makefile ]]
1910	# then
1911	# printf "\n +++ file \"$makefile\" does not exist"
1912	# locat=make; exit
1913	# else
1914	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1915	# fi
1916	# fi
1917
1918	fi # do_compile=true
1919
1920
1921	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1922	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1923	if [[ $do_compile = true ]]
1924	then
1925
1926	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1927	# ZUSAMMENSETZEN
1928	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1929	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1930	then
1931	cpp_options="${cpp_options},-D__ibm=__ibm"
1932	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1933	then
1934	cpp_options="$cpp_options -D__nec"
1935	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1936	then
1937	cpp_options="$cpp_options -D__lc"
1938	else
1939	cpp_options="$cpp_options -D__$localhost"
1940	fi
1941
1942	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1943	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1944	then
1945	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1946	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1947	else
1948	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1949	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1950	fi
1951
1952	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1953	if [[ -n $package_list ]]
1954	then
1955	for package in $package_list
1956	do
1957	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1958	then
1959	if [[ $package != "dvrp_graphics+1PE" ]]
1960	then
1961	cpp_options="${cpp_options},-D__$package=__$package"
1962	else
1963	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1964	export use_seperate_pe_for_dvrp_output=true
1965	fi
1966	else
1967	if [[ $package != "dvrp_graphics+1PE" ]]
1968	then
1969	cpp_options="$cpp_options -D__$package"
1970	else
1971	cpp_options="$cpp_options -D__dvrp_graphics"
1972	export use_seperate_pe_for_dvrp_output=true
1973	fi
1974	fi
1975	done
1976	fi
1977
1978	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1979	if [[ -n $cpp_opts ]]
1980	then
1981	for popts in $cpp_opts
1982	do
1983	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1984	then
1985	cpp_options="${cpp_options},-D__$popts=__$popts"
1986	else
1987	cpp_options="$cpp_options -D__$popts"
1988	fi
1989	done
1990	fi
1991
1992	else
1993
1994
1995	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1996	if [[ $do_remote = false ]]
1997	then
1998	if [[ ! -f $executable ]]
1999	then
2000	printf "\n +++ executable file: $executable"
2001	printf "\n does not exist"
2002	locat=executable; exit
2003	fi
2004	fi
2005	fi
2006
2007
2008	# JOBMODUS FESTSTELLEN
2009	if [[ "$ENVIRONMENT" = BATCH ]]
2010	then
2011	jobmo=BATCH
2012	else
2013	jobmo=INTERACTIVE
2014	fi
2015
2016
2017	# no interactive runs on lctit
2018	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
2019	then
2020	printf "\n +++ no interactive runs allowed on host \"$host\" "
2021	printf "\n please submit batch job using mrun option \"-b\" \n"
2022	locat=normal; exit
2023	fi
2024
2025
2026	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
2027	# DURCH BENUTZER ANDERWEITIG VEREINBART
2028	if [[ "$compiler_name" = "" ]]
2029	then
2030
2031	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
2032	locat=compiler_name; exit
2033
2034	fi
2035
2036
2037	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
2038	[[ $localhost = necriam ]] && compiler_name=mpif90
2039
2040
2041
2042	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
2043	kennung=$RANDOM
2044	if [[ "$tmp_user_catalog" = "" ]]
2045	then
2046	if [[ $localhost = ibmh ]]
2047	then
2048	tmp_user_catalog=$SCRATCH
2049	elif [[ $localhost = nech ]]
2050	then
2051	tmp_user_catalog=$WRKSHR
2052	else
2053	tmp_user_catalog=/tmp
2054	fi
2055	fi
2056	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
2057
2058
2059	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
2060	# BESTIMMEN
2061	if [[ "$tmp_data_catalog" = "" ]]
2062	then
2063	if [[ $localhost = nech ]]
2064	then
2065	tmp_data_catalog=$WRKSHR/mrun_restart_data
2066	else
2067	tmp_data_catalog=/tmp/mrun_restart_data
2068	fi
2069	fi
2070
2071
2072	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
2073	# ERSETZEN
2074	if [[ $do_remote = false && $do_compile = true ]]
2075	then
2076	eval fopts=\"$fopts\"
2077	eval lopts=\"$lopts\"
2078	fi
2079
2080
2081
2082	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
2083	fopts="$fopts $netcdf_inc $dvr_inc"
2084	lopts="$lopts $netcdf_lib $dvr_lib"
2085	ROPTS="$ropts"
2086	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxt4 \|\| $host = lcxt5m \|\| $host = lck \|\| $host = lckordi) && -n $numprocs ]]
2087	then
2088	XOPT="-X $numprocs"
2089	fi
2090
2091
2092
2093	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
2094	# GRAMM BENOETIGT
2095	done=false
2096	while [[ $done = false ]]
2097	do
2098	cputime=$cpumax
2099	if (( $cputime == 0 ))
2100	then
2101	if [[ $do_batch = true ]]
2102	then
2103	printf "\n +++ cpu-time is undefined"
2104	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
2105	printf "\n >>> "
2106	read cputime 1>/dev/null 2>&1
2107	else
2108	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
2109	fi
2110	else
2111	done=true
2112	fi
2113	cpumax=$cputime
2114	done
2115
2116	(( minuten = cputime / 60 ))
2117	(( sekunden = cputime - minuten * 60 ))
2118
2119
2120	# PRUEFEN DER KERNSPEICHERANFORDERUNG
2121	if [[ $do_batch = true ]]
2122	then
2123	done=false
2124	while [[ $done = false ]]
2125	do
2126	if (( memory == 0 ))
2127	then
2128	printf "\n +++ memory demand is undefined"
2129	printf "\n >>> Please type memory in MByte per process as INTEGER:"
2130	printf "\n >>> "
2131	read memory 1>/dev/null 2>&1
2132	else
2133	done=true
2134	fi
2135	done
2136	fi
2137
2138
2139	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
2140	if [[ $do_remote = true && -z $remote_username ]]
2141	then
2142	while [[ -z $remote_username ]]
2143	do
2144	printf "\n +++ username on remote host \"$host\" is undefined"
2145	printf "\n >>> Please type username:"
2146	printf "\n >>> "
2147	read remote_username
2148	done
2149	mc="$mc -u$remote_username"
2150	fi
2151
2152
2153	# set module load command and export for subjob
2154	if [[ "$modules" != "" ]]
2155	then
2156	if [[ $host = lctit ]]
2157	then
2158	export module_calls=". $modules"
2159	else
2160	export module_calls="module load ${modules};"
2161	fi
2162	fi
2163
2164	# bugfix for wrong netcdf module and for netCDF4 usage in case of mpt
2165	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2166	then
2167	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
2168	then
2169	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
2170	fi
2171	# if [[ $(echo $module_calls \| grep -c mpt) != 0 ]]
2172	# then
2173	# export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/sgi/mpt/2011-02-07/lib:\$LD_LIBRARY_PATH;"
2174	# echo "*** module_calls = $module_calls"
2175	# fi
2176	fi
2177
2178
2179	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
2180	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2181	then
2182	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
2183	then
2184	mpilib=mpt
2185	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
2186	then
2187	mpilib=mvapich
2188	elif [[ $(echo $modules \| grep -c impi ) != 0 ]]
2189	then
2190	mpilib=impi
2191	fi
2192	fi
2193
2194
2195
2196	###########################################################################
2197	# HEADER-AUSGABE
2198	###########################################################################
2199
2200
2201	calltime=$(date)
2202	printf "\n"
2203	# [[ $silent = false ]] && clear
2204	printf "#--------------------------------------------------------------# \n"
2205	printf "\| $version$calltime \| \n"
2206	printf "\| \| \n"
2207	spalte1="called on:"; spalte2=$localhost_realname
2208	printf "\| $spalte1$spalte2 \| \n"
2209	if [[ $local_compile = false ]]
2210	then
2211	if [[ $do_remote = true ]]
2212	then
2213	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2214	else
2215	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2216	fi
2217	else
2218	spalte1="compiling test only!"; spalte2=""
2219	fi
2220	printf "\| $spalte1$spalte2 \| \n"
2221	if [[ -n $numprocs ]]
2222	then
2223	spalte1="number of PEs:"; spalte2=$numprocs
2224	printf "\| $spalte1$spalte2 \| \n"
2225	fi
2226	if [[ -n $tasks_per_node ]]
2227	then
2228	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2229	printf "\| $spalte1$spalte2 \| \n"
2230	fi
2231	if [[ $maximum_parallel_io_streams != $numprocs ]]
2232	then
2233	spalte1="max par io streams:"; spalte2="$maximum_parallel_io_streams"
2234	printf "\| $spalte1$spalte2 \| \n"
2235	fi
2236	if [[ $use_openmp = true ]]
2237	then
2238	spalte1="threads per task:"; spalte2="$threads_per_task"
2239	printf "\| $spalte1$spalte2 \| \n"
2240	fi
2241	printf "\| \| \n"
2242	if [[ $do_compile = true ]]
2243	then
2244	if [[ "$mopts" != "" ]]
2245	then
2246	spalte1="make options:"; spalte2=$mopts
2247	printf "\| $spalte1$spalte2 \| \n"
2248	zeile=$(echo "$mopts" \| cut -c41-)
2249	while [[ "$zeile" != "" ]]
2250	do
2251	spalte1=""
2252	spalte2=$zeile
2253	printf "\| $spalte1$spalte2 \| \n"
2254	zeile=$(echo "$zeile" \| cut -c41-)
2255	done
2256	fi
2257
2258	spalte1="cpp directives:"; spalte2=$cpp_options
2259	printf "\| $spalte1$spalte2 \| \n"
2260	zeile=$(echo "$cpp_options" \| cut -c41-)
2261	while [[ "$zeile" != "" ]]
2262	do
2263	spalte1=""
2264	spalte2=$zeile
2265	printf "\| $spalte1$spalte2 \| \n"
2266	zeile=$(echo "$zeile" \| cut -c41-)
2267	done
2268
2269	spalte1="compiler options:"; spalte2="$fopts"
2270	printf "\| $spalte1$spalte2 \| \n"
2271	zeile=$(echo "$fopts" \| cut -c41-)
2272	while [[ "$zeile" != "" ]]
2273	do
2274	spalte1=""
2275	spalte2=$zeile
2276	printf "\| $spalte1$spalte2 \| \n"
2277	zeile=$(echo "$zeile" \| cut -c41-)
2278	done
2279
2280	spalte1="linker options:"; spalte2=$lopts
2281	printf "\| $spalte1$spalte2 \| \n"
2282	zeile=$(echo "$lopts" \| cut -c41-)
2283	while [[ "$zeile" != "" ]]
2284	do
2285	spalte1=""
2286	spalte2=$zeile
2287	printf "\| $spalte1$spalte2 \| \n"
2288	zeile=$(echo "$zeile" \| cut -c41-)
2289	done
2290
2291	spalte1="modules to be load:"; spalte2=$modules
2292	printf "\| $spalte1$spalte2 \| \n"
2293	zeile=$(echo "$modules" \| cut -c41-)
2294	while [[ "$zeile" != "" ]]
2295	do
2296	spalte1=""
2297	spalte2=$zeile
2298	printf "\| $spalte1$spalte2 \| \n"
2299	zeile=$(echo "$zeile" \| cut -c41-)
2300	done
2301
2302	spalte1="main program":; spalte2=$mainprog
2303	printf "\| $spalte1$spalte2 \| \n"
2304	else
2305	spalte1=executable:; spalte2=$executable
2306	printf "\| $spalte1$spalte2 \| \n"
2307	fi
2308	printf "\| \| \n"
2309	spalte1="base name of files":; spalte2=$fname
2310	printf "\| $spalte1$spalte2 \| \n"
2311	if [[ $fname != $afname ]]
2312	then
2313	spalte1="base name of input files":; spalte2=$afname
2314	printf "\| $spalte1$spalte2 \| \n"
2315	fi
2316	spalte1="INPUT control list":; spalte2=$input_list
2317	printf "\| $spalte1$spalte2 \| \n"
2318	spalte1="OUTPUT control list":; spalte2=$output_list
2319	printf "\| $spalte1$spalte2 \| \n"
2320
2321	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2322	then
2323	spalte1="memory demand / PE":; spalte2="$memory MB"
2324	printf "\| $spalte1$spalte2 \| \n"
2325	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2326	printf "\| $spalte1$spalte2 \| \n"
2327	fi
2328
2329	if [[ $do_compile = true ]]
2330	then
2331	printf "\| \| \n"
2332	printf "\| Files to be compiled: \| \n"
2333	zeile=$source_list
2334	while [[ "$zeile" != "" ]]
2335	do
2336	spalte3=$zeile
2337	printf "\| $spalte3 \| \n"
2338	zeile=$(echo "$zeile" \| cut -c61-)
2339	done
2340	fi
2341	printf "#--------------------------------------------------------------#"
2342
2343
2344
2345	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2346	if [[ $do_trace = true ]]
2347	then
2348	(( i = 0 ))
2349	while (( i < iin ))
2350	do
2351	(( i = i + 1 ))
2352	if (( i == 1 ))
2353	then
2354	printf "\n\n >>> INPUT-file assignments:\n"
2355	fi
2356	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2357	done
2358	(( i = 0 ))
2359	while (( i < iout ))
2360	do
2361	(( i = i + 1 ))
2362	if (( i == 1 ))
2363	then
2364	printf "\n\n >>> OUTPUT-file assignments:\n"
2365	fi
2366	printf "\n ${localout[$i]} : ${pathout[$i]}"
2367	done
2368	(( i = 0 ))
2369	while (( i < iic ))
2370	do
2371	(( i = i + 1 ))
2372	if (( i == 1 ))
2373	then
2374	printf "\n\n >>> INPUT-commands:\n"
2375	fi
2376	printf "\n ${in_command[$i]}"
2377	done
2378	(( i = 0 ))
2379	while (( i < ioc ))
2380	do
2381	(( i = i + 1 ))
2382	if (( i == 1 ))
2383	then
2384	printf "\n\n >>> OUTPUT-commands:\n"
2385	fi
2386	printf "\n ${out_command[$i]}"
2387	done
2388	fi
2389
2390
2391	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2392	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2393	then
2394	antwort=dummy
2395	printf "\n\n"
2396	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2397	do
2398	printf " >>> everything o.k. (y/n) ? "
2399	read antwort
2400	done
2401	if [[ $antwort = n \|\| $antwort = N ]]
2402	then
2403	locat=user_abort; (( iec = 0 )); exit
2404	fi
2405	if [[ $do_batch = true ]]
2406	then
2407	printf " >>> batch-job will be created and submitted"
2408	else
2409	if [[ $local_compile = false ]]
2410	then
2411	printf " >>> MRUN will now continue to execute on this machine"
2412	else
2413	printf " >>> a test compilation will now be carried out on this machine"
2414	fi
2415	fi
2416	fi
2417
2418	#### PERFORM PARAMETER FILE CHECK (COUPLED RUNS ARE NOT SUPPORTED YET)
2419	skip_check=false
2420	if [[ $check_namelist_files == false \|\| $fromhost != $localhost \|\| $run_coupled_model == true \|\| $restart_run == true ]]
2421	then
2422	skip_check=true
2423	fi
2424	if [[ $skip_check == false ]]
2425	then
2426	if [[ $ocean_file_appendix == true ]]
2427	then
2428	d3par_string="d3o#"
2429	d3fpar_string="d3of"
2430	else
2431	d3par_string="d3#"
2432	d3fpar_string="d3f"
2433	fi
2434
2435	tmp_check=${working_directory}/tmp_check
2436
2437	# GET PARAMETER FILE SUFFIX (USUALLY "_P3D")
2438	line=""
2439	found=false
2440	grep "$d3par_string" $config_file \| grep "PARIN" > $tmp_check
2441	while read line1
2442	do
2443	line="$line1"
2444	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2445	then
2446	# EVENTUELLE DOPPELPUNKTE AUS OPTIONSSTRING ENTFERNEN
2447	p3d_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2448	found=true
2449	fi
2450	done < $tmp_check
2451
2452	if [[ $found = false ]]
2453	then
2454	printf "\n +++ no PARIN list entry found for $d3par_string in the configuration file."
2455
2456	locat=check_namelist; exit
2457	fi
2458
2459	# GET RESTART PARAMETER FILE SUFFIX (USUALLY "_P3DF"). THIS FILE MIGHT IS
2460	# NOT NECESSARILY REQUIRED
2461	line=""
2462	found=false
2463	grep "d3f" $config_file \| grep "PARIN" > $tmp_check
2464	while read line1
2465	do
2466	line="$line1"
2467	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2468	then
2469	p3df_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2470	found=true
2471	fi
2472	done < $tmp_check
2473
2474	if [[ $found = false ]]
2475	then
2476	printf "\n +++ no PARIN list entry found for d3f in the configuration file."
2477	fi
2478	# GET TOPOGRAPHY PARAMETER FILE SUFFIX (USUALLY "_P3DF"). THIS FILE MIGHT IS
2479	# NOT NECESSARILY REQUIRED
2480	line=""
2481	found=false
2482	grep "d3f" $config_file \| grep "TOPOGRAPHY_DATA" > $tmp_check
2483	while read line1
2484	do
2485	line="$line1"
2486	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2487	then
2488	topo_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2489	found=true
2490	fi
2491	done < $tmp_check
2492
2493	if [[ $found = false ]]
2494	then
2495	printf "\n +++ no TOPOGRAPHY list entry found in the configuration file."
2496	fi
2497
2498	rm -rf ${working_directory}/tmp_check
2499
2500	# DEFINE VARIABLES FOR FREQUENTLY USED DIRECTORIES
2501	check_depository="${working_directory}/trunk/UTIL"
2502	check_sources="${working_directory}/tmp_check_namelist_files"
2503
2504	# CHECK IF THE A P3DF FILE MUST BE CHECKED
2505	for item in $input_list
2506	do
2507	if [[ "$item" == "restart" \|\| "$item" == d3f \|\| "$item" == d3of ]]
2508	then
2509	check_restart=1
2510	else
2511	check_restart=0
2512	fi
2513	done
2514
2515	# ERROR IF NO PARAMETER FILE WAS FOUND, OTHERWISE PROCEED
2516	if [[ ! -f $working_directory/JOBS/$fname/INPUT/${fname}${p3d_suffix} ]]
2517	then
2518	printf "\n\n +++ ERROR: parameter file (${fname}${p3d_suffix}) not found."
2519	locat=check_namelist; exit
2520	fi
2521
2522	# CHECK IF THE RESTART PARAMETER FILE EXISTS (IF NECESSARY)
2523	if [[ $check_restart == 1 ]]
2524	then
2525	if [[ ! -f $working_directory/JOBS/$fname/INPUT/${fname}${p3df_suffix} ]]
2526	then
2527	printf "\n\n +++ WARNING: restart parameter file (${fname}${p3df_suffix}) is missing."
2528	check_restart=0
2529	answer=dummy
2530	printf "\n\n"
2531
2532	if [[ $silent == false ]]
2533	then
2534	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2535	do
2536	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2537	read answer
2538	done
2539	if [[ $answer = a \|\| $answer = A ]]
2540	then
2541	printf "\n +++ Aborting...."
2542	locat=normal; exit
2543	fi
2544	fi
2545	else
2546	check_restart=1
2547	fi
2548	fi
2549
2550	# CREATE TEMPORARY SOURCES_FOR_CHECK PATH
2551	mkdir $check_sources
2552	cd $check_sources
2553
2554	# CHECK FOR USER CODE, OTHERWISE USE THE PRECOMPILED CHECK_NAMELIST_FILES.X
2555	if [[ -d $working_directory/USER_CODE/$fname ]]
2556	then
2557	printf "\n\n *** copying files from $check_depository"
2558	cp $check_depository/check_namelist_files.tar ./
2559
2560	printf "\n\n *** untar of makefile and source files in $check_sources"
2561	tar -xf check_namelist_files.tar > /dev/null 2>&1
2562
2563	printf "\n\n *** adding user code."
2564	cp $working_directory/USER_CODE/$fname/* ./
2565	touch check_namelist_files.f90
2566
2567	# GET COMPILER OPTIONS AND PERFORM MAKE
2568	printf "\n\n *** compiling code if necessary...\n"
2569	copts_check="-cpp -D_parallel -D__check"
2570	make -f Makefile_check F90=$compiler_name_ser COPT="$copts_check"
2571
2572	# GET MAKE OUTPUT
2573	if [[ $? != 0 ]]
2574	then
2575	printf "\n +++ error during make."
2576	answer=dummy
2577	printf "\n\n"
2578	if [[ $silent == false ]]
2579	then
2580	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2581	do
2582	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2583	read answer
2584	done
2585	if [[ $answer = a \|\| $answer = A ]]
2586	then
2587	printf "\n +++ Aborting..."
2588	rm -rf $check_sources
2589	locat=normal; exit
2590	else
2591	skip_check=true
2592	fi
2593	else
2594	skip_check=true
2595	fi
2596	fi
2597	else
2598	cp $PALM_BIN/check_namelist_files.x ./
2599	fi
2600
2601	cp $working_directory/JOBS/$fname/INPUT/${fname}${p3d_suffix} ./PARIN
2602	if [[ $check_restart == 1 ]]
2603	then
2604	cp $working_directory/JOBS/$fname/INPUT/${fname}${p3df_suffix} ./PARINF
2605	fi
2606
2607
2608	if [[ -f $working_directory/JOBS/$fname/INPUT/${fname}${topo_suffix} && $skip_check == false ]]
2609	then
2610	printf "\n *** adding topography data"
2611	cp $working_directory/JOBS/$fname/INPUT/${fname}${topo_suffix} ./TOPOGRAPHY_DATA
2612
2613	# IN CASE OF TOPOGRAPHY AND HIGH GRID POINT NUMBERS, THE STACK SIZE
2614	# MUST BE INCREASED. THIS IS DUE TO THE ARRAY nzb_local AND topo_height,
2615	# WHICH REQUIRE SUFFICIENT MEMORY
2616	ulimit -s unlimited
2617	fi
2618
2619	# CREATE ENVPAR FILE, WHICH IS NEEDED BY CHECK_NAMELIST_FILES.X
2620	cat > ENVPAR << %%END%%
2621	&envpar run_identifier = '$fname', host = '$host',
2622	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2623	maximum_parallel_io_streams = $maximum_parallel_io_streams,
2624	maximum_cpu_time_allowed = ${cpumax}.,
2625	revision = '$global_revision',
2626	local_dvrserver_running = $local_dvrserver_running /
2627
2628	%%END%%
2629
2630	# SAFETY CHECK: ONLY PROCEED IF THE PARAMETER CHECK PROGRAM WAS PROPERLY COMPILED
2631	if [[ ! -f check_namelist_files.x && $skip_check == false ]] then
2632	printf "\n +++ WARNING: check_namelist_files.x not found."
2633	answer=dummy
2634	printf "\n\n"
2635
2636	if [[ $silent == false ]]
2637	then
2638	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2639	do
2640	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2641	read answer
2642	done
2643	if [[ $answer = a \|\| $answer = A ]]
2644	then
2645	printf "\n +++ Aborting..."
2646	rm -rf $check_sources
2647	locat=normal; exit
2648	else
2649	printf "\n *** Skipping parameter file check."
2650
2651	fi
2652	fi
2653
2654	elif [[ $skip_check == false ]]
2655	then
2656	# STARTING THE PARAMETER FILE CHECK
2657	printf "\n\n *** starting parameter file check..."
2658
2659	# CHECKING THE P3D FILE
2660	printf "\n\n (1) checking $fname$p3d_suffix"
2661	echo "$numprocs 0" > VARIN
2662	errors=`./check_namelist_files.x < VARIN 2>&1`
2663
2664	check_error=false
2665	if [[ "$errors" == "" ]]
2666	then
2667	printf " --> o.k."
2668	else
2669	printf " --> failed."
2670	check_error=true
2671	printf "\n\n $errors"
2672	fi
2673
2674	# CHECKING THE PD3F FILE IF NECESSARY
2675	if [[ $check_restart == 1 && $check_error == false ]]
2676	then
2677	printf "\n\n (2) checking $fname$p3df_suffix"
2678
2679	# FIRST CHECK IF INITIALIZING_ACTIONS="READ_RESTART_DATA" IS SET IN &INIPAR LIST
2680	found=false
2681	cat PARINF\|while read line
2682	do
2683	line=$(echo $line\|sed 's/ //g')
2684	if [[ $line == "&inipar" ]]
2685	then
2686	start_search=true
2687	fi
2688
2689	if [[ $start_search == true ]]
2690	then
2691	if [[ $line == "initializing_actions='read_restart_data'" ]]
2692	then
2693	found=true
2694	break
2695	fi
2696	fi
2697
2698	if [[ $line == "/" ]]
2699	then
2700	start_search=false
2701	fi
2702
2703	done
2704
2705	if [[ $found = false ]]
2706	then
2707	printf "\n\n +++ ERROR: initializing_actions = 'read_restart_data' not found"
2708	printf "\n in &inipar list in $fname$p3df_suffix."
2709	rm -rf $check_sources
2710	locat=check_namelist; exit
2711	fi
2712
2713	echo "$numprocs 1" > VARIN
2714	errors=`./check_namelist_files.x < VARIN 2>&1`
2715
2716	if [[ "$errors" == "" ]]
2717	then
2718	printf " --> o.k."
2719	else
2720	printf " --> failed."
2721	check_error=true
2722	printf "\n\n $errors"
2723	fi
2724	fi
2725
2726	# REPORT ERRORS AND CONTINUE/EXIT
2727	if [[ $check_error == true ]]
2728	then
2729	printf "\n +++ errors found in the parameter file!\n"
2730	answer=dummy
2731	printf "\n\n"
2732
2733	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2734	do
2735	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2736	read answer
2737	done
2738
2739	if [[ $answer = a \|\| $answer = A ]]
2740	then
2741	printf "\n +++ Aborting..."
2742	rm -rf $check_sources
2743	locat=normal; exit
2744	fi
2745	else
2746	printf "\n\n *** parameter file(s) seem(s) to be o.k.\n"
2747	fi
2748	rm -rf $check_sources
2749	fi
2750	else
2751	printf "\n\n +++ skipping parameter file check\n"
2752	fi
2753
2754	# DELETE TEMPORARY DIRECTORY AND FINISH NAMELIST FILE CHECK
2755	rm -rf $check_sources
2756	cd $working_directory
2757
2758	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2759	# CHENDE AKTIONEN DURCHGEFUEHRT
2760	if [[ $do_batch = false ]]
2761	then
2762
2763
2764	# TEMPORAEREN KATALOG ERZEUGEN
2765	mkdir -p $TEMPDIR
2766	chmod go+rx $TEMPDIR
2767	tmpcreate=true
2768
2769	# set striping on lustre file system
2770	# if [[ $localhost = lcsgih ]]
2771	# then
2772	# lfs setstripe -s 8192k -c 16 $TEMPDIR
2773	# lfs getstripe $TEMPDIR
2774	# fi
2775
2776
2777	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2778	# TEMPORAERES VERZEICHNIS KOPIEREN
2779	if [[ $do_compile = true ]]
2780	then
2781
2782	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2783	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2784	if [[ $localhost = nech ]]
2785	then
2786	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2787	if mkdir -p $TEMPDIR_COMPILE
2788	then
2789	printf "\n *** \"$TEMPDIR_COMPILE\" "
2790	printf "\n is generated as temporary directory for cross compiling\n"
2791	else
2792	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2793	printf "\n needed for cross compilation failed"
2794	locat=compile
2795	exit
2796	fi
2797	else
2798	TEMPDIR_COMPILE=$TEMPDIR
2799	fi
2800
2801
2802	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2803	line=""
2804	grep "%depository_path" $config_file > tmp_mrun
2805	while read line
2806	do
2807	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2808	then
2809	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2810	then
2811	global_depository_path=`echo $line \| cut -d" " -s -f2`
2812	fi
2813	fi
2814	done < tmp_mrun
2815
2816	line=""
2817	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2818	while read line
2819	do
2820	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2821	then
2822	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2823	then
2824	local_depository_path=`echo $line \| cut -d" " -s -f2`
2825	fi
2826	fi
2827	done < tmp_mrun
2828
2829	if [[ "$local_depository_path" = "" ]]
2830	then
2831	if [[ "$global_depository_path" != "" ]]
2832	then
2833	local_depository_path=$global_depository_path
2834	else
2835	printf "\n\n +++ no depository path found in configuration file"
2836	printf "\n for local host \"$localhost\" "
2837	printf "\n please set \"\%depository_path\" in configuration file\n"
2838	locat=config_file; exit
2839	fi
2840	fi
2841	eval local_depository_path=$local_depository_path
2842	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2843	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2844
2845
2846	basename=`print $mainprog \| cut -f1 -d"."`
2847	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2848	if [[ ! -f $make_depository ]]
2849	then
2850	printf "\n"
2851	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2852	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2853	else
2854	cp $make_depository $TEMPDIR_COMPILE
2855	cd $TEMPDIR_COMPILE
2856	tar -xf $make_depository > /dev/null 2>&1
2857	cd - > /dev/null
2858	fi
2859
2860	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2861
2862	else
2863
2864	cp $executable ${TEMPDIR}/a.out
2865
2866	fi
2867
2868
2869	# WECHSEL IN TEMPORAEREN KATALOG
2870	cd $TEMPDIR
2871	printf "\n *** changed to temporary directory: $TEMPDIR"
2872
2873
2874	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2875	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2876	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2877	# ERMITTELN
2878	(( i = 0 ))
2879	while (( i < iout ))
2880	do
2881	(( i = i + 1 ))
2882	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2883	then
2884	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2885	else
2886	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2887	fi
2888	done
2889
2890
2891	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2892	if [[ $do_compile = true ]]
2893	then
2894
2895
2896	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2897	printf "\n\n\n *** compilation starts \n$striche\n"
2898	printf " *** compilation with make using following options:\n"
2899	printf " make depository: $make_depository"
2900	if [[ "$mopts" != "" ]]
2901	then
2902	printf " make options: $mopts\n"
2903	fi
2904	printf " compilername: $compiler_name\n"
2905	printf " compiler options: $fopts\n"
2906	printf " preprocessor directives: $cpp_options \n"
2907	printf " linker options: $lopts \n"
2908	if [[ "$modules" != "" ]]
2909	then
2910	printf " modules to be load: $modules \n"
2911	fi
2912	printf " source code files: $source_list \n"
2913
2914	if [[ $localhost = nech ]]
2915	then
2916	ssh 136.172.44.192 -l $usern ". /SX/opt/etc/initsx.sh; $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2917	cp $TEMPDIR_COMPILE/a.out .
2918	[[ $? != 0 ]] && compile_error=true
2919	rm -rf $TEMPDIR_COMPILE
2920	elif [[ $localhost = ibmh ]]
2921	then
2922	printf " compiler is called via ssh on \"plogin1\" \n"
2923	ssh plogin1 -l $usern "export PATH=/sw/ibm/xlf/12.1.0.3/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2924	[[ ! -f a.out ]] && compile_error=true
2925	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2926	elif [[ $localhost = lcsgib ]]
2927	then
2928	printf " compiler is called via ssh on \"bicegate0\" \n"
2929	ssh bicegate0 -l $usern ". /usr/share/modules/init/bash; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2930	[[ ! -f a.out ]] && compile_error=true
2931	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2932	elif [[ $localhost = lcsgih ]]
2933	then
2934	printf " compiler is called via ssh on \"hicegate0\" \n"
2935	ssh hicegate0 -l $usern ". /usr/share/modules/init/bash; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2936	[[ ! -f a.out ]] && compile_error=true
2937	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2938	elif [[ $localhost = lcflow ]]
2939	then
2940	printf " compiler is called via ssh on \"flow\" \n"
2941	ssh flow02.hpc.uni-oldenburg.de -l $usern ". /cm/local/apps/environment-modules/3.2.6/Modules/3.2.6/init/bash; echo $MODULEPATH; echo $MODULESHOME; MODULEPATH=/cm/shared/modulefiles/; module load netcdf/intel/64/4.1.3 intel/ics/64/2011.0.013 intel/impi/64/4.0.1.007 hdf5/intel/64/1.8.7; cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2942	[[ ! -f a.out ]] && compile_error=true
2943	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2944	else
2945	[[ $localhost = lcxt4 ]] && . /opt/modules/default/init/ksh
2946	[[ "$module_calls" != "" ]] && eval $module_calls
2947	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2948
2949	fi
2950
2951	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2952	then
2953	printf "\n +++ error occured while compiling or linking"
2954	locat=compile
2955
2956	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
2957	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
2958	# then
2959	exit
2960	# else
2961	# locat=normal
2962	# fi
2963	else
2964	printf "$striche\n *** compilation finished \n"
2965	fi
2966	fi
2967
2968
2969	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2970	if [[ $local_compile = true ]]
2971	then
2972	cd $HOME
2973	rm -rf $TEMPDIR
2974	locat=local_compile; exit
2975	fi
2976
2977
2978	# BEREITSTELLEN DER INPUT-DATEIEN
2979	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2980	(( i = 0 ))
2981	while (( i < iin ))
2982	do
2983	(( i = i + 1 ))
2984	if (( i == 1 ))
2985	then
2986	printf "\n\n *** providing INPUT-files:\n$striche"
2987	fi
2988
2989
2990	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2991	if [[ "${transin[$i]}" = unavailable ]]
2992	then
2993	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2994	then
2995	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2996	printf "\n is not available!"
2997	else
2998	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2999	printf "\n is not available!"
3000	fi
3001	continue
3002	fi
3003
3004	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3005	files_for_pes=false; datentyp=file
3006	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
3007	then
3008	files_for_pes=true; datentyp=directory
3009	actionin[$i]=""
3010	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
3011	then
3012	actionin[$i]=""
3013	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
3014	then
3015	files_for_pes=true; datentyp=directory
3016	actionin[$i]="ar"
3017	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
3018	then
3019	actionin[$i]="ar"
3020	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
3021	then
3022	files_for_pes=true; datentyp=directory
3023	actionin[$i]="fl"
3024	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
3025	then
3026	actionin[$i]="fl"
3027	fi
3028
3029	if [[ $files_for_pes = true ]]
3030	then
3031	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
3032	else
3033	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
3034	fi
3035
3036	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
3037	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
3038	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
3039	# SERVER ZU HOLEN
3040	if [[ "${actionin[$i]}" = fl ]]
3041	then
3042	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
3043	if [[ $files_for_pes = false ]]
3044	then
3045	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
3046	then
3047	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
3048	got_tmp[$i]=true
3049	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
3050	then
3051	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
3052	printf "\n *** trying to use backup copy in \"$WORK\" "
3053	cp $WORK/${frelin[$i]} ${localin[$i]}
3054	else
3055	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
3056	printf "\n or \"$tmp_data_catalog\" does not exist!"
3057	printf "\n *** trying to get copy from archive"
3058	actionin[$i]=ar
3059	fi
3060	else
3061	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
3062	then
3063	mkdir ${localin[$i]}
3064	cd $tmp_data_catalog/${frelin[$i]}
3065	for file in $(ls *)
3066	do
3067	ln $file $TEMPDIR/${localin[$i]}
3068	done
3069	cd $TEMPDIR
3070	got_tmp[$i]=true
3071	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
3072	then
3073	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
3074	printf "\n *** trying to use backup copy in \"$WORK\" "
3075	cp -r $WORK/${frelin[$i]} ${localin[$i]}
3076	else
3077	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
3078	printf "\n or \"$tmp_data_catalog\" does not exist!"
3079	printf "\n *** trying to get copy from archive"
3080	actionin[$i]=ar
3081	fi
3082	fi
3083	fi
3084
3085
3086	# DATEI LIEGT AUF ARCHIV-SERVER
3087	if [[ "${actionin[$i]}" = ar ]]
3088	then
3089
3090	if [[ $files_for_pes = false ]]
3091	then
3092	printf "\n file will be restored from archive-system ($archive_system)!"
3093	else
3094	printf "\n directory will be restored from archive-system ($archive_system)!"
3095	fi
3096
3097	file_restored=false
3098
3099	if [[ $archive_system = asterix ]]
3100	then
3101	do_stagein=true
3102	(( stagein_anz = 0 ))
3103	while [[ $do_stagein = true ]]
3104	do
3105	if [[ $files_for_pes = false ]]
3106	then
3107	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
3108	else
3109	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
3110	fi
3111	cat STAGEIN_OUTPUT
3112	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
3113	then
3114	file_restored=true
3115	do_stagein=false
3116	else
3117	(( stagein_anz = stagein_anz + 1 ))
3118	if (( stagein_anz == 10 ))
3119	then
3120	printf "\n +++ stagein stoped after 10 tries"
3121	locat=stage
3122	exit
3123	fi
3124	printf "\n +++ restoring from archive failed, trying again:"
3125	sleep 900
3126	fi
3127	done
3128	elif [[ $archive_system = DMF ]]
3129	then
3130	if [[ $files_for_pes = false ]]
3131	then
3132	printf "\n +++ restoring of single files impossible with $archive_system !\n"
3133	locat=DMF
3134	exit
3135	else
3136	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
3137	cp -r $ARCHIVE/${frelin[$i]} $PWD
3138	file_restored=true
3139	fi
3140	elif [[ $archive_system = tivoli ]]
3141	then
3142	if [[ $files_for_pes = false ]]
3143	then
3144	if [[ $localhost = lcsgih ]]
3145	then
3146	ssh $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3147	else
3148	ssh $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3149	fi
3150	else
3151	(( inode = 0 ))
3152	while (( inode < nodes ))
3153	do
3154	if [[ $localhost = lcsgih ]]
3155	then
3156	ssh $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3157	else
3158	ssh $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3159	fi
3160	(( inode = inode + 1 ))
3161	done
3162	fi
3163	file_restored=true
3164	elif [[ $archive_system = ut ]]
3165	then
3166	if [[ $files_for_pes = false ]]
3167	then
3168	cp $UT/${frelin[$i]} .
3169	else
3170	(( inode = 0 ))
3171	while (( inode < nodes ))
3172	do
3173	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
3174	(( inode = inode + 1 ))
3175	done
3176	fi
3177	file_restored=true
3178	else
3179	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
3180	locat=rearchive
3181	exit
3182	fi
3183
3184	if [[ $file_restored = true ]]
3185	then
3186
3187	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
3188	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
3189	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
3190	if [[ $files_for_pes = false ]]
3191	then
3192	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
3193	else
3194	mkdir $tmp_data_catalog/${frelin[$i]}
3195	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
3196	fi
3197	got_tmp[$i]=true
3198
3199	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
3200	mv ${frelin[$i]} ${localin[$i]}
3201
3202	fi
3203	fi
3204
3205
3206	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
3207	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
3208	then
3209
3210	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
3211	then
3212
3213	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
3214	printf "\n file will be provided for $numprocs processors"
3215	mkdir ${localin[$i]}
3216	ival=$numprocs
3217	(( ii = 0 ))
3218	while (( ii <= ival-1 ))
3219	do
3220	if (( ii < 10 ))
3221	then
3222	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
3223	elif (( ii < 100 ))
3224	then
3225	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
3226	elif (( ii < 1000 ))
3227	then
3228	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
3229	else
3230	cp ${absnamein[$i]} ${localin[$i]}/_$ii
3231	fi
3232	(( ii = ii + 1 ))
3233	done
3234
3235	else
3236
3237	if [[ $files_for_pes = true ]]
3238	then
3239
3240	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
3241	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
3242	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
3243	# PER MOVE UMBENANNT WERDEN
3244	printf "\n providing $numprocs files for the respective processors"
3245	mkdir ${localin[$i]}
3246	if [[ $link_local_input = true ]]
3247	then
3248	printf " using ln -f\n"
3249	cd ${absnamein[$i]}
3250	for file in $(ls *)
3251	do
3252	ln -f $file ${localin[$i]}
3253	done
3254	cd $TEMPDIR
3255	fi
3256	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
3257	if [[ ! -f "${localin[$i]}/_0000" ]]
3258	then
3259	if [[ $link_local_input = true ]]
3260	then
3261	printf " ln failed for .../_0000, using cp...\n"
3262	fi
3263	cp -r ${absnamein[$i]}/* ${localin[$i]}
3264	fi
3265
3266	else
3267	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
3268	if [[ $link_local_input = true ]]
3269	then
3270	printf " using ln -f\n"
3271	ln -f ${absnamein[$i]} ${localin[$i]}
3272	fi
3273	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
3274	if [[ ! -f "${localin[$i]}" ]]
3275	then
3276	if [[ $link_local_input = true ]]
3277	then
3278	printf " ln failed, using cp...\n"
3279	fi
3280	cp ${absnamein[$i]} ${localin[$i]}
3281	fi
3282	fi
3283	fi
3284	fi
3285
3286	done
3287	if (( i != 0 ))
3288	then
3289	printf "\n$striche\n *** all INPUT-files provided \n"
3290	fi
3291
3292
3293	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
3294	(( i = 0 ))
3295	while (( i < iic ))
3296	do
3297	(( i = i + 1 ))
3298	if (( i == 1 ))
3299	then
3300	printf "\n\n *** execution of INPUT-commands:\n$striche"
3301	fi
3302	printf "\n >>> ${in_command[$i]}"
3303	eval ${in_command[$i]}
3304	if (( i == iic ))
3305	then
3306	printf "\n$striche\n"
3307	fi
3308	done
3309
3310
3311	# VERBLEIBENDE CPU-ZEIT BERECHNEN
3312	cpurest=${cpumax}.
3313
3314
3315	# START DVR STREAMING SERVER
3316	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3317	then
3318	if [[ "$dvr_server" != "" ]]
3319	then
3320
3321	printf "\n\n *** preparing the dvr streaming server configuration file"
3322
3323	# Check, if a dvr server is already running
3324	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
3325	if [[ "$running_dvrserver_id" != "" ]]
3326	then
3327
3328	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
3329	printf "\n This server is used instead starting a new one!"
3330	printf "\n If required, script \"process_dvr_output\" has to be run manually."
3331
3332	else
3333
3334	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
3335	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
3336	then
3337	cp ${PALM_BIN}/.dvrserver.config .
3338
3339	# Entering the BASEDIR, UID and GID into this file
3340	user_id=`id -u`
3341	group_id=`id -g`
3342	# & is needed as seperator, because TEMPDIR contains /
3343	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
3344	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
3345	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
3346	mv .dvrserver.3 .dvrserver.config
3347	rm .dvrserver.1 .dvrserver.2
3348
3349	# Start dvr server in background, get his id and print on terminal
3350	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
3351	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
3352	printf "\n *** streaming server with id=$dvrserver_id is started in background"
3353	local_dvrserver_running=.TRUE.
3354	else
3355	printf "\n +++ missing file \".dvrserver.config\" in directory:"
3356	printf "\n \"$PALM_BIN\" "
3357	locat=dvr
3358	exit
3359	fi
3360
3361	fi
3362
3363	else
3364	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
3365	fi
3366	fi
3367
3368
3369	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
3370	# LESEN VON PALM)
3371	cat > ENVPAR << %%END%%
3372	&envpar run_identifier = '$fname', host = '$localhost',
3373	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
3374	maximum_parallel_io_streams = $maximum_parallel_io_streams,
3375	maximum_cpu_time_allowed = ${cpumax}.,
3376	revision = '$global_revision',
3377	local_dvrserver_running = $local_dvrserver_running /
3378
3379	%%END%%
3380
3381
3382	# PROGRAMMSTART
3383	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
3384	PATH=$PATH:$TEMPDIR
3385
3386	# MPI debug option (argument checking, slows down execution due to increased latency)
3387	if [[ "$mpi_debug" = true ]]
3388	then
3389	export MPI_CHECK_ARGS=1
3390	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
3391	fi
3392
3393	if [[ "$totalview" = true ]]
3394	then
3395	printf "\n *** totalview debugger will be used"
3396	tv_opt="-tv"
3397	else
3398	tv_opt=""
3399	fi
3400
3401	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
3402	then
3403	if [[ "$ENVIRONMENT" = BATCH ]]
3404	then
3405	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
3406	then
3407	printf "\n +++ debug is allowed in interactive mode only"
3408	locat=debug
3409	exit
3410	fi
3411	fi
3412	if [[ $localhost = decalpha ]]
3413	then
3414	dxladebug a.out
3415	elif [[ $localhost = ibmh ]]
3416	then
3417
3418	# SETUP THE IBM MPI ENVIRONMENT
3419	export MP_SHARED_MEMORY=yes
3420	export AIXTHREADS_SCOPE=S
3421	export OMP_NUM_THREADS=$threads_per_task
3422	export AUTHSTATE=files
3423	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3424
3425	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
3426	export MP_ADAPTER_USE=shared
3427	export MP_CPU_USE=multiple
3428	export MP_TIMEOUT=1200
3429
3430	unset MP_TASK_AFFINITY
3431
3432	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
3433	#(( ii = 1 ))
3434	#while (( ii <= $numprocs ))
3435	#do
3436	# echo $localhost_realname >> hostfile
3437	# (( ii = ii + 1 ))
3438	#done
3439	#export MP_HOSTFILE=hostfile
3440
3441	if [[ "$LOADLBATCH" = yes ]]
3442	then
3443	totalview poe a.out $ROPTS
3444	else
3445	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3446	export TVDSVRLAUNCHCMD=ssh
3447	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3448	fi
3449	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
3450	then
3451	# CURRENTLY NO DEBUGGER ON LCSGI
3452	if [[ $run_coupled_model = true ]]
3453	then
3454	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
3455	locat=debug
3456	exit
3457	else
3458	echo "no_coupling" > runfile_atmos
3459	fi
3460	(( ii = $numprocs / $threads_per_task ))
3461	export OMP_NUM_THREADS=$threads_per_task
3462	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3463	if [[ $threads_per_task != 1 ]]
3464	then
3465	printf "\n threads per task: $threads_per_task"
3466	fi
3467	printf "\n\n"
3468	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3469	then
3470	# export MPI_LAUNCH_TIMEOUT=360
3471	if [[ "$totalview" = true ]]
3472	then
3473	printf "\n running totalview debugger"
3474	mpiexec_mpt $tv_opt -n $ii ./a.out $ROPTS < runfile_atmos
3475	else
3476	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3477	fi
3478	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3479	then
3480	# ulimit -s 300000 # A too large stack size causes problems
3481	# export MV2_NUM_PORTS=2
3482	# export MV2_CPU_MAPPING=0:1:2:3
3483	if [[ "$totalview" = true ]]
3484	then
3485	printf "\n running totalview debugger"
3486	mpiexec $tv_opt ./a.out $ROPTS < runfile_atmos
3487	else
3488	mpiexec ./a.out $ROPTS < runfile_atmos
3489	fi
3490	fi
3491	else
3492	printf "\n +++ no debug available on \"$localhost\" "
3493	printf "\n or not implemented in mrun so far"
3494	locat=debug
3495	exit
3496	fi
3497
3498	# end debug mode
3499	else
3500
3501	# normal execution
3502	if [[ -n $numprocs ]]
3503	then
3504	# RUNNING THE PROGRAM ON PARALLEL MACHINES
3505	if [[ $(echo $host \| cut -c1-3) = ibm ]]
3506	then
3507	# SETUP THE IBM MPI ENVIRONMENT
3508	if [[ $host != ibmh && $host != ibmkisti ]]
3509	then
3510	export MP_SHARED_MEMORY=yes
3511	export AIXTHREAD_SCOPE=S
3512	export OMP_NUM_THREADS=$threads_per_task
3513	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
3514	export AUTHSTATE=files
3515	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3516	# export MP_PRINTENV=yes
3517
3518	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3519	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3520	export MP_WAIT_MODE=poll
3521	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3522	fi
3523
3524	if [[ $host = ibmkisti ]]
3525	then
3526	export LANG=en_US
3527	export MP_SHARED_MEMORY=yes
3528	if [[ $threads_per_task = 1 ]]
3529	then
3530	export MP_SINGLE_THREAD=yes
3531	export MEMORY_AFFINITY=MCM
3532	else
3533	export OMP_NUM_THREADS=$threads_per_task
3534	fi
3535	fi
3536
3537	if [[ "$LOADLBATCH" = yes ]]
3538	then
3539	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3540	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3541	then
3542	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3543	else
3544	if [[ $run_coupled_model = false ]]
3545	then
3546	if [[ "$ocean_file_appendix" = true ]]
3547	then
3548	echo "precursor_ocean" > runfile_atmos
3549	else
3550	echo "precursor_atmos" > runfile_atmos
3551	fi
3552	else
3553	(( iia = $numprocs_atmos / $threads_per_task ))
3554	(( iio = $numprocs_ocean / $threads_per_task ))
3555	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3556	printf "\n using $coupled_mode coupling"
3557	printf "\n\n"
3558	echo "coupled_run $iia $iio" > runfile_atmos
3559	fi
3560	poe ./a.out $ROPTS < runfile_atmos
3561	fi
3562	else
3563	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
3564	then
3565	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3566	elif [[ $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibmy ]]
3567	then
3568	if [[ -f $hostfile ]]
3569	then
3570	cp $hostfile hostfile
3571	else
3572	(( ii = 1 ))
3573	while (( ii <= $numprocs ))
3574	do
3575	echo $localhost_realname >> hostfile
3576	(( ii = ii + 1 ))
3577	done
3578	fi
3579	export MP_HOSTFILE=hostfile
3580	if [[ $run_coupled_model = false ]]
3581	then
3582	if [[ "$ocean_file_appendix" = true ]]
3583	then
3584	echo "precursor_ocean" > runfile_atmos
3585	else
3586	echo "precursor_atmos" > runfile_atmos
3587	fi
3588	else
3589	(( iia = $numprocs_atmos / $threads_per_task ))
3590	(( iio = $numprocs_ocean / $threads_per_task ))
3591	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3592	printf "\n using $coupled_mode coupling"
3593	printf "\n\n"
3594	echo "coupled_run $iia $iio" > runfile_atmos
3595	fi
3596	if [[ $localhost = ibmy ]]
3597	then
3598	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3599	else
3600	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
3601	fi
3602
3603	else
3604	if [[ "$host_file" = "" ]]
3605	then
3606	printf "\n +++ no hostfile given in configuration file"
3607	locat=config_file
3608	exit
3609	else
3610	eval host_file=$host_file
3611	fi
3612	export MP_HOSTFILE=$host_file
3613	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3614	fi
3615	fi
3616	elif [[ $host = nech \|\| $host = necriam ]]
3617	then
3618	(( ii = nodes ))
3619	if [[ $ii = 1 ]]
3620	then
3621	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3622	export MPIPROGINF=YES
3623	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3624	echo "*** execution on single node with mpirun"
3625	mpirun -np $numprocs ./a.out $ROPTS
3626	else
3627	(( i = 0 ))
3628	while (( i < ii ))
3629	do
3630	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3631	(( i = i + 1 ))
3632	done
3633
3634	echo "#!/bin/sh" > mpi_exec_shell
3635	echo " " >> mpi_exec_shell
3636	echo "set -u" >> mpi_exec_shell
3637	echo "F_ERRCNT=0" >> mpi_exec_shell
3638	echo "MPIPROGINV=YES" >> mpi_exec_shell
3639	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3640	echo "cpurest=$cpurest" >> mpi_exec_shell
3641	echo "fname=$fname" >> mpi_exec_shell
3642	echo "localhost=$localhost" >> mpi_exec_shell
3643	echo "return_addres=$return_addres" >> mpi_exec_shell
3644	echo "return_username=$return_username" >> mpi_exec_shell
3645	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3646	echo "write_binary=$write_binary" >> mpi_exec_shell
3647	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3648	echo " " >> mpi_exec_shell
3649	echo "export F_ERRCNT" >> mpi_exec_shell
3650	echo "export MPIPROGINV" >> mpi_exec_shell
3651	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3652	echo "export cpurest" >> mpi_exec_shell
3653	echo "export fname" >> mpi_exec_shell
3654	echo "export localhost" >> mpi_exec_shell
3655	echo "export return_addres" >> mpi_exec_shell
3656	echo "export return_username" >> mpi_exec_shell
3657	echo "export tasks_per_node" >> mpi_exec_shell
3658	echo "export write_binary" >> mpi_exec_shell
3659	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3660	echo " " >> mpi_exec_shell
3661	echo "exec ./a.out" >> mpi_exec_shell
3662
3663	chmod u+x mpi_exec_shell
3664	export MPIPROGINF=YES
3665	mpirun -f multinode_config &
3666	wait
3667
3668	fi
3669	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
3670	then
3671
3672	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3673	# DOES NOT EXIST
3674	if [[ $host != lcsgih && $host != lcsgib ]]
3675	then
3676	if [[ -f $hostfile ]]
3677	then
3678	cp $hostfile hostfile
3679	(( ii = $numprocs / $threads_per_task ))
3680	else
3681	(( ii = 1 ))
3682	while (( ii <= $numprocs / $threads_per_task ))
3683	do
3684	echo $localhost_realname >> hostfile
3685	(( ii = ii + 1 ))
3686	done
3687	fi
3688	eval zeile=\"`head -n $ii hostfile`\"
3689	printf "\n *** running on: $zeile"
3690	fi
3691
3692	(( ii = $numprocs / $threads_per_task ))
3693	export OMP_NUM_THREADS=$threads_per_task
3694	# echo "*** OMP_NUM_THREADS=$OMP_NUM_THREADS"
3695	if [[ $threads_per_task != 1 ]]
3696	then
3697	# increase stack size to unlimited, because large runs
3698	# may abort otherwise
3699	ulimit -Ss unlimited
3700	printf "\n threads per task: $threads_per_task stacksize: unlimited"
3701	fi
3702	if [[ $run_coupled_model = false ]]
3703	then
3704	if [[ "$ocean_file_appendix" = true ]]
3705	then
3706	echo "precursor_ocean" > runfile_atmos
3707	else
3708	echo "precursor_atmos" > runfile_atmos
3709	fi
3710	printf "\n\n"
3711	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3712	then
3713	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3714	then
3715	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3716	# export MPI_DSM_DISTRIBUTE=1
3717	# MPI_DSM_CPULIST: pin MPI processes to cores
3718	if [[ $use_openmp = false ]]
3719	then
3720	if [[ "$sgi_feature" = ice2 ]]
3721	then
3722	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
3723	else
3724	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3725	fi
3726	else
3727	unset MPI_DSM_CPULIST
3728	fi
3729	# MPI_IB_RAILS: use both IB rails on ICE2
3730	export MPI_BUFS_PER_HOST=512
3731	export MPI_IB_RAILS=2
3732	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3733	export MPI_CONNECTIONS_THRESHOLD=8192
3734	# echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
3735	export MPI_TYPE_DEPTH=20
3736	# echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
3737	export MPI_GROUP_MAX=64
3738	# echo "*** MPI_GROUP_MAX=$MPI_GROUP_MAX"
3739	if [[ $use_openmp = true ]]
3740	then
3741	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3742	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3743	else
3744	mpiexec_mpt -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3745	fi
3746
3747	# next is test for openmp usage
3748	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3749	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
3750	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3751	then
3752	export MV2_NUM_PORTS=2
3753	# The default setting of MV2_CPU_MAPPING gives best results
3754	# export MV2_ENABLE_AFFINITY=1
3755	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3756	# if [[ "$sgi_feature" = ice2 ]]
3757	# then
3758	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
3759	# else
3760	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3761	# fi
3762	if [[ $use_openmp = true ]]
3763	then
3764	unset MV2_CPU_MAPPING
3765	export MV2_ENABLE_AFFINITY=0
3766	fi
3767	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
3768	echo "*** MV2_ENABLE_AFFINITY=$MV2_ENABLE_AFFINITY"
3769	if [[ $use_openmp = true ]]
3770	then
3771	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3772	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3773	else
3774	mpiexec -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3775	fi
3776	elif [[ "$mpilib" = impi ]]
3777	then
3778	echo "mpirun -np $tasks_per_node inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos"
3779	mpirun -np $tasks_per_node inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos
3780	fi
3781	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3782	then
3783	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3784	elif [[ $host = lcflow ]]
3785	then
3786	mpiexec -machinefile $TMPDIR/machines -n $ii -env I_MPI_FABRICS shm:ofa a.out < runfile_atmos $ROPTS
3787	else
3788	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3789	fi
3790	else
3791
3792	# currently there is no full MPI-2 support on ICE and XT4
3793	(( iia = $numprocs_atmos / $threads_per_task ))
3794	(( iio = $numprocs_ocean / $threads_per_task ))
3795	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3796	printf "\n using $coupled_mode coupling"
3797	printf "\n\n"
3798
3799	if [[ $coupled_mode = "mpi2" ]]
3800	then
3801	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3802	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3803	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3804	then
3805
3806	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3807	then
3808	# export MPI_LAUNCH_TIMEOUT=360
3809	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3810	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3811	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3812	then
3813	# ulimit -s 300000 # A too large stack size causes problems
3814	# export MV2_NUM_PORTS=2
3815	# export MV2_CPU_MAPPING=0:1:2:3
3816	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3817	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3818	fi
3819
3820	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3821	then
3822
3823	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3824	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3825
3826	else
3827	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3828	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3829	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3830	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3831	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3832	fi
3833	wait
3834
3835	else
3836
3837	echo "coupled_run $iia $iio" > runfile_atmos
3838	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3839	then
3840
3841	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3842	then
3843	# export MPI_LAUNCH_TIMEOUT=360
3844	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3845	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3846	then
3847	# ulimit -s 300000 # A too large stack size causes problems
3848	# export MV2_NUM_PORTS=2
3849	# export MV2_CPU_MAPPING=0:1:2:3
3850	mpiexec ./a.out $ROPTS < runfile_atmos
3851	fi
3852
3853	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3854	then
3855
3856	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3857
3858	elif [[ $host = lck \|\| $host = lckordi ]]
3859	then
3860	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3861	fi
3862	wait
3863	fi
3864
3865	fi
3866	elif [[ $host = decalpha ]]
3867	then
3868	dmpirun -np $numprocs a.out $ROPTS
3869	elif [[ $host = lckyoto ]]
3870	then
3871	set -xv
3872	export P4_RSHCOMMAND=plesh
3873	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
3874	if [[ "$ENVIRONMENT" = BATCH ]]
3875	then
3876	if [[ "$cond2" = fujitsu ]]
3877	then
3878	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
3879	elif [[ "cond2" = pgi ]]
3880	then
3881	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
3882	else
3883	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
3884	fi
3885	else
3886	if [[ "$cond2" = "" ]]
3887	then
3888	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
3889	else
3890	mpirun -np $numprocs ./a.out $ROPTS
3891	fi
3892	fi
3893	set +xv
3894	elif [[ $host = lctit ]]
3895	then
3896	export OMP_NUM_THREADS=$threads_per_task
3897	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3898	if [[ "$threads_per_task" != 1 ]]
3899	then
3900	export MV2_ENABLE_AFFINITY=0
3901	fi
3902	echo "----- PBS_NODEFILE content:"
3903	cat $PBS_NODEFILE
3904	echo "-----"
3905	(( ii = $numprocs / $threads_per_task ))
3906	echo "mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS"
3907	mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS
3908	else
3909	mpprun -n $numprocs a.out $ROPTS
3910	fi
3911	[[ $? != 0 ]] && execution_error=true
3912
3913
3914	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3915	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3916	then
3917	apprentice
3918	fi
3919	else
3920	a.out $ROPTS
3921	fi
3922	fi
3923	if [[ $? != 0 \|\| $execution_error = true ]]
3924	then
3925
3926	# ABBRUCH BEI LAUFZEITFEHLER
3927	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3928	printf "\n +++ runtime error occured"
3929	locat=execution
3930	exit
3931	else
3932	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3933	printf "\n$striche\n *** execution finished \n"
3934
3935	# Stop the dvr streaming server and process the dvr output in order
3936	# to create dvrs- and html-files containing all streams
3937	if [[ "$dvrserver_id" != "" ]]
3938	then
3939	kill $dvrserver_id
3940	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3941
3942	# If there is a directory, data have been output by the
3943	# streaming server. Otherwise, user has chosen dvrp_output=local
3944	if [[ -d DATA_DVR ]]
3945	then
3946
3947	# Add the current dvr configuration file to the dvr output
3948	# directory
3949	cp .dvrserver.config DATA_DVR
3950
3951	# Process the dvr output (option -s for also generating
3952	# sequence mode data)
3953	process_dvr_output -d DATA_DVR -f $fname -s
3954
3955	else
3956
3957	# Process the local output
3958	process_dvr_output -l -d DATA_DVR -f $fname
3959
3960	fi
3961
3962	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3963	then
3964
3965	# Process dvr output generated in local mode (dvrp_output=local)
3966	process_dvr_output -l -d DATA_DVR -f $fname
3967
3968	fi
3969	fi
3970
3971
3972
3973	# Call of combine_plot_fields in order to merge single files written
3974	# by each PE into one file.
3975	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
3976	then
3977	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
3978	printf "\n 2d- and/or 3d-data may be incomplete!"
3979	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
3980	else
3981	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
3982	combine_plot_fields${block}.x
3983	fi
3984
3985
3986
3987	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3988	(( i = 0 ))
3989	while (( i < ioc ))
3990	do
3991	(( i = i + 1 ))
3992	if (( i == 1 ))
3993	then
3994	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
3995	fi
3996	printf "\n >>> ${out_command[$i]}"
3997	eval ${out_command[$i]}
3998	if (( i == ioc ))
3999	then
4000	printf "\n$striche\n"
4001	fi
4002	done
4003
4004
4005	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
4006	if [[ $do_trace = true ]]
4007	then
4008	printf "\n\n"
4009	ls -al
4010	fi
4011
4012
4013
4014	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
4015	(( i = 0 ))
4016	while (( i < iout ))
4017	do
4018	(( i = i + 1 ))
4019	if (( i == 1 ))
4020	then
4021	printf "\n\n *** saving OUTPUT-files:\n$striche"
4022	fi
4023
4024	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
4025	files_for_pes=false; filetyp=file
4026	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
4027	then
4028	files_for_pes=true; filetyp=directory
4029	actionout[$i]=""
4030	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
4031	then
4032	actionout[$i]=""
4033	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
4034	then
4035	files_for_pes=true; filetyp=directory
4036	actionout[$i]="ar"
4037	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
4038	then
4039	actionout[$i]="ar"
4040	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
4041	then
4042	files_for_pes=true; filetyp=directory
4043	actionout[$i]="fl"
4044	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
4045	then
4046	actionout[$i]="fl"
4047	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
4048	then
4049	files_for_pes=true; filetyp=directory
4050	actionout[$i]="tr"
4051	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
4052	then
4053	actionout[$i]="tr"
4054	fi
4055
4056	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
4057	then
4058	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
4059	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
4060	then
4061	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
4062	else
4063
4064
4065	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
4066	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
4067	# REMOTE-RECHNUNGEN
4068	if [[ "${actionout[$i]}" = tr ]]
4069	then
4070	if [[ $localhost != $fromhost ]]
4071	then
4072	if [[ $files_for_pes = false ]]
4073	then
4074	cps=""
4075	cst=""
4076	else
4077	cps=-c
4078	cst="/"
4079	fi
4080	if [[ $localhost = nech ]]
4081	then
4082
4083	# TRANSFER IN EIGENSTAENDIGEM JOB
4084	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4085	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4086	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4087	if [[ $files_for_pes = false ]]
4088	then
4089	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4090	else
4091	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
4092	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
4093	fi
4094
4095	echo "set -x" > transfer_${localout[$i]}
4096	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4097
4098	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
4099	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
4100	printf "\n or higher cycle\n"
4101	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4102
4103	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4104
4105	if [[ $localhost = nech ]]
4106	then
4107	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
4108	else
4109	if [[ "$LOGNAME" = b323013 ]]
4110	then
4111	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
4112	else
4113	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
4114	fi
4115	fi
4116
4117	else
4118
4119	# TRANSFER INNERHALB DIESES JOBS
4120	transfer_failed=false
4121	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
4122	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
4123	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4124	[[ $? != 0 ]] && transfer_failed=true
4125
4126	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4127	# LOKALER MASCHINE ANLEGEN
4128	if [[ $transfer_failed = true ]]
4129	then
4130	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4131	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4132
4133	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4134	# ANLEGEN.
4135	eval local_catalog=${pathout[$i]}
4136	if [[ ! -d $local_catalog ]]
4137	then
4138	printf " *** local directory does not exist. Trying to create:\n"
4139	printf " $local_catalog \n"
4140	mkdir -p $local_catalog
4141	fi
4142	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4143	transfer_problems=true
4144	fi
4145	fi
4146	else
4147
4148	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
4149	actionout[$i]=""
4150	fi
4151	fi
4152
4153
4154	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
4155	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
4156	# REMOTE-RECHNUNGEN
4157	if [[ "${actionout[$i]}" = tra ]]
4158	then
4159	if [[ $localhost != $fromhost ]]
4160	then
4161	if [[ $localhost = ibmh \|\| $localhost = nech ]]
4162	then
4163
4164	# TRANSFER IN EIGENSTAENDIGEM JOB
4165	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4166	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4167	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4168	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4169
4170	echo "set -x" > transfer_${localout[$i]}
4171	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4172
4173	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
4174	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
4175	printf "\n or higher cycle\n"
4176	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4177
4178	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4179
4180	if [[ $localhost = nech ]]
4181	then
4182	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
4183	else
4184	if [[ $LOGNAME = b323013 ]]
4185	then
4186	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
4187	else
4188	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
4189	fi
4190	fi
4191
4192	else
4193
4194	# TRANSFER INNERHALB DIESES JOBS
4195	transfer_failed=false
4196	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
4197	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
4198	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4199	[[ $? != 0 ]] && transfer_failed=true
4200
4201	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4202	# LOKALER MASCHINE ANLEGEN
4203	if [[ $transfer_failed = true ]]
4204	then
4205	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4206	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4207
4208	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4209	# ANLEGEN
4210	eval local_catalog=${pathout[$i]}
4211	if [[ ! -d $local_catalog ]]
4212	then
4213	printf " *** local directory does not exist. Trying to create:\n"
4214	printf " $local_catalog \n"
4215	mkdir -p $local_catalog
4216	fi
4217
4218	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4219	transfer_problems=true
4220	fi
4221	fi
4222	else
4223
4224	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
4225	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
4226	actionout[$i]=a
4227	fi
4228	fi
4229
4230
4231	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
4232	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
4233	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
4234	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
4235	if [[ "${actionout[$i]}" = fl ]]
4236	then
4237	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4238	chmod g+rx $tmp_data_catalog
4239	if [[ $files_for_pes = false ]]
4240	then
4241	printf "\n >>> OUTPUT: ${localout[$i]} to"
4242	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4243	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
4244	else
4245	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
4246	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4247	mkdir $tmp_data_catalog/${frelout[$i]}
4248	cd ${localout[$i]}
4249	for file in $(ls *)
4250	do
4251	ln -f $file $tmp_data_catalog/${frelout[$i]}
4252	done
4253	cd $TEMPDIR
4254	fi
4255
4256
4257	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
4258	if [[ $store_on_archive_system = true ]]
4259	then
4260
4261	if [[ $archive_system = asterix ]]
4262	then
4263	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4264	if [[ $files_for_pes = false ]]
4265	then
4266	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4267	else
4268	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4269	fi
4270	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4271	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
4272	echo "then" >> archive_${frelout[$i]}
4273	echo " do_stageout=false" >> archive_${frelout[$i]}
4274	echo "else" >> archive_${frelout[$i]}
4275	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
4276	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
4277	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
4278	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
4279	if [[ $files_for_pes = false ]]
4280	then
4281	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
4282	else
4283	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
4284	fi
4285	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
4286	echo "fi" >> archive_${frelout[$i]}
4287	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4288	elif [[ $archive_system = DMF ]]
4289	then
4290	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4291	if [[ $files_for_pes = false ]]
4292	then
4293	printf "\n +++ archiving of single files impossible with $archive_system !\n"
4294	locat=DMF
4295	exit
4296	else
4297	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
4298	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
4299	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
4300	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
4301	fi
4302	elif [[ $archive_system = tivoli ]]
4303	then
4304	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4305	if [[ $files_for_pes = false ]]
4306	then
4307	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4308	echo "set -x" >> archive_${frelout[$i]}
4309	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4310	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4311	else
4312
4313	echo "set -x" >> archive_${frelout[$i]}
4314	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
4315	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4316	cd $tmp_data_catalog
4317	all_files=`ls -1 ${frelout[$i]}/*`
4318	cd - > /dev/null
4319	(( inode = 0 ))
4320	(( tp1 = tasks_per_node + 1 ))
4321	while (( inode < nodes ))
4322	do
4323	# echo "*** all_files = \"$all_files\" "
4324	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4325	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4326	# echo "*** tasks_per_node = \"$tasks_per_node\" "
4327	# echo "*** files = \"$files\" "
4328	# echo "*** all_files = \"$all_files\" "
4329	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4330	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4331	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
4332	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4333	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4334	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4335	(( inode = inode + 1 ))
4336	done
4337	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4338	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4339	fi
4340	elif [[ $archive_system = ut ]]
4341	then
4342	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4343	if [[ $files_for_pes = false ]]
4344	then
4345	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4346	echo "set -x" >> archive_${frelout[$i]}
4347	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4348	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4349	else
4350
4351	echo "set -x" >> archive_${frelout[$i]}
4352	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
4353	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
4354	cd $tmp_data_catalog
4355	all_files=`ls -1 ${frelout[$i]}/*`
4356	cd - > /dev/null
4357	(( inode = 0 ))
4358	(( tp1 = tasks_per_node + 1 ))
4359	while (( inode < nodes ))
4360	do
4361	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4362	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4363	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4364	(( inode = inode + 1 ))
4365	done
4366	fi
4367	elif [[ $archive_system = none ]]
4368	then
4369	printf " +++ archiving on $localhost not available!\n"
4370	fi
4371
4372	if [[ $archive_system != none ]]
4373	then
4374	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
4375	then
4376	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
4377	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog archive_${frelout[$i]}
4378	elif [[ $localhost = nech ]]
4379	then
4380	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
4381	fi
4382	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4383	fi
4384	else
4385	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
4386	fi
4387
4388
4389	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
4390	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4391	if [[ $files_for_pes = false ]]
4392	then
4393	cat /dev/null > ${pathout[$i]}
4394	else
4395	mkdir -p ${pathout[$i]}
4396	fi
4397
4398	fi
4399
4400
4401	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
4402	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
4403	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4404	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
4405	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
4406	# GEMAESSEN ARCHIVIERUNGEN GESETZT
4407	if [[ "${actionout[$i]}" = ar ]]
4408	then
4409	if [[ $files_for_pes = false ]]
4410	then
4411	printf "\n >>> OUTPUT: ${localout[$i]} to"
4412	printf "\n ${pathout[$i]}"
4413	printf "\n File will be copied to archive-system ($archive_system) !\n"
4414	else
4415	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
4416	printf "\n ${pathout[$i]}"
4417	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
4418	fi
4419	mv ${localout[$i]} ${frelout[$i]}
4420
4421	file_saved=false
4422
4423	if [[ $archive_system = asterix ]]
4424	then
4425	do_stageout=true
4426	(( stageout_anz = 0 ))
4427	while [[ $do_stageout = true ]]
4428	do
4429	if [[ $files_for_pes = false ]]
4430	then
4431	stageout ${frelout[$i]} > STAGE_OUTPUT
4432	else
4433	stageout -t ${frelout[$i]} > STAGE_OUTPUT
4434	fi
4435	cat STAGE_OUTPUT
4436	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
4437	then
4438	file_saved=true
4439	do_stageout=false
4440	else
4441	if [[ $files_for_pes = false ]]
4442	then
4443	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
4444	else
4445	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
4446	fi
4447	(( stageout_anz = stageout_anz + 1 ))
4448	if (( stageout_anz == 10 ))
4449	then
4450	printf "\n +++ stoped after 10 unsuccessful tries!"
4451	archive_save=false
4452	do_stageout=false
4453	else
4454	printf "\n *** new try to store on archive after 15 min:"
4455	sleep 900
4456	fi
4457	fi
4458	done
4459	elif [[ $archive_system = DMF ]]
4460	then
4461	if [[ $files_for_pes = false ]]
4462	then
4463	printf "\n +++ archiving of single files impossible on $archive_system!\n"
4464	locat=DMF
4465	exit
4466	else
4467	rm -rf $ARCHIVE/${frelout[$i]}
4468	cp -r ${frelout[$i]} $ARCHIVE
4469	fi
4470	file_saved=true
4471	elif [[ $archive_system = tivoli ]]
4472	then
4473	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4474	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4475	# GELEGT WERDEN
4476	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4477	chmod g+rx $tmp_data_catalog
4478	if [[ $files_for_pes = false ]]
4479	then
4480	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4481	else
4482	mkdir $tmp_data_catalog/${frelout[$i]}
4483	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4484	fi
4485
4486	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4487	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4488	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4489	if [[ $files_for_pes = false ]]
4490	then
4491	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4492	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4493	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4494	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4495	else
4496	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4497	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4498	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4499	fi
4500
4501	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
4502	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4503	file_saved=true
4504
4505	elif [[ $archive_system = ut ]]
4506	then
4507	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4508	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4509	# GELEGT WERDEN
4510	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4511	chmod g+rx $tmp_data_catalog
4512	if [[ $files_for_pes = false ]]
4513	then
4514	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4515	else
4516	mkdir $tmp_data_catalog/${frelout[$i]}
4517	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4518	fi
4519
4520	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4521	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4522	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4523	if [[ $files_for_pes = false ]]
4524	then
4525	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4526	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4527	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4528	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4529	else
4530	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4531	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4532	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4533	fi
4534
4535	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
4536	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4537	file_saved=true
4538
4539	else
4540	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
4541	archive_save=false
4542	fi
4543	if [[ $file_saved = true ]]
4544	then
4545	if [[ $files_for_pes = false ]]
4546	then
4547	cat /dev/null > ${pathout[$i]}
4548	else
4549	mkdir -p ${pathout[$i]}
4550	fi
4551	fi
4552	fi
4553
4554	# APPEND AUF LOKALER MASCHINE
4555	if [[ "${actionout[$i]}" = "a" ]]
4556	then
4557	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4558	then
4559	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}.${extout[$i]}\n"
4560	cat ${localout[$i]} >> ${pathout[$i]}.${extout[$i]}
4561	else
4562	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
4563	cat ${localout[$i]} >> ${pathout[$i]}
4564	fi
4565	fi
4566
4567	# KOPIEREN AUF LOKALER MASCHINE
4568	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
4569	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
4570	then
4571
4572	# KOPIEREN AUF EINPROZESSORMASCHINE
4573	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4574	then
4575	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
4576	if [[ $link_local_output = true ]]
4577	then
4578	printf " using ln -f\n"
4579	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4580	fi
4581	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4582	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
4583	then
4584	if [[ $link_local_output = true ]]
4585	then
4586	printf " ln failed, using cp...\n"
4587	fi
4588	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4589	fi
4590	else
4591	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
4592	if [[ $link_local_output = true ]]
4593	then
4594	printf " using ln -f\n"
4595	ln -f ${localout[$i]} ${pathout[$i]}
4596	fi
4597	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4598	if [[ ! -f "${pathout[$i]}" ]]
4599	then
4600	if [[ $link_local_output = true ]]
4601	then
4602	printf " ln failed, using cp...\n"
4603	fi
4604	cp ${localout[$i]} ${pathout[$i]}
4605	fi
4606	fi
4607
4608	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
4609	then
4610
4611	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
4612	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
4613	# WIRD DANN KOPIERT
4614	# PER MOVE UMBENANNT WERDEN
4615	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4616	if [[ $link_local_output = true ]]
4617	then
4618	printf " using ln -f\n"
4619	mkdir ${pathout[$i]}
4620	cd ${localout[$i]}
4621	for file in $(ls *)
4622	do
4623	ln -f $file ${pathout[$i]}
4624	done
4625	cd $TEMPDIR
4626	fi
4627	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4628	if [[ ! -f "${pathout[$i]}/_0000" ]]
4629	then
4630	if [[ $link_local_output = true ]]
4631	then
4632	printf " ln failed for .../_0000, using cp...\n"
4633	fi
4634	cp -r ${localout[$i]} ${pathout[$i]}
4635	fi
4636
4637	fi
4638	fi
4639	done
4640	if (( i != 0 ))
4641	then
4642	if [[ $transfer_problems = true ]]
4643	then
4644	printf "\n$striche\n *** OUTPUT-files saved"
4645	printf "\n +++ WARNING: some data transfers failed! \n"
4646	else
4647	printf "\n$striche\n *** all OUTPUT-files saved \n"
4648	fi
4649	fi
4650
4651
4652	# EVENTUELL FOLGEJOB STARTEN
4653	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4654	if [[ -f CONTINUE_RUN ]]
4655	then
4656
4657	if [[ $archive_save = true ]]
4658	then
4659
4660	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4661	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4662	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4663	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4664	# HANDEN
4665	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4666	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4667	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4668	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4669	then
4670	mc=`echo $mc \| sed 's/#/f/g'`
4671	fi
4672
4673
4674	# JOB STARTEN
4675	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4676	echo " $mc"
4677	printf "\n$striche\n"
4678	if [[ $localhost != $fromhost ]]
4679	then
4680
4681	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibms ]]
4682	then
4683	echo "*** ssh will be used to initiate restart-runs!"
4684	echo " return_addres=\"$return_addres\" "
4685	echo " return_username=\"$return_username\" "
4686	if [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4687	then
4688	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export LD_LIBRARY_PATH=\$LD_LIBRARY_PATH:/muksoft/packages/intel/Compiler/11.1/073/lib/intel64/;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4689	else
4690	if [[ $localhost = ibmkisti ]]
4691	then
4692	ssh $usern@gaiad "ssh $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4693	else
4694	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4695	fi
4696	fi
4697	else
4698	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4699	locat=restart; exit
4700	fi
4701
4702	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4703	# DER AKTUELLE JOB ENDET
4704	if [[ $queue = special1q ]]
4705	then
4706	sleep 120
4707	else
4708	sleep 30
4709	fi
4710
4711	else
4712
4713	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4714	# RUFEN WERDEN, AUSSER AUF lcfimm
4715	cd $LOCAL_PWD
4716	if [[ $localhost = lcfimm ]]
4717	then
4718	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4719	else
4720	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4721	fi
4722	cd - > /dev/null
4723	fi
4724	printf "\n$striche\n *** restart-run initiated \n"
4725
4726
4727	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4728	# GEHOLT WORDEN SIND, LOESCHEN
4729	(( i = 0 ))
4730	while (( i < iin ))
4731	do
4732	(( i = i + 1 ))
4733	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4734	then
4735	rm -r $tmp_data_catalog/${frelin[$i]}
4736	fi
4737	done
4738
4739	else
4740
4741	printf "\n +++ no restart-run possible, since errors occured"
4742	printf "\n during the archive process"
4743	fi
4744
4745	fi
4746
4747
4748
4749	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4750	if [[ "$email_notification" != "none" ]]
4751	then
4752
4753	if [[ $localhost != $fromhost ]]
4754	then
4755	if [[ -f CONTINUE_RUN ]]
4756	then
4757	echo "PALM restart run necessary" > email_text
4758	echo "description header of actual run:" >> email_text
4759	cat CONTINUE_RUN >> email_text
4760	echo "mrun-command to restart:" >> email_text
4761	echo "$mc" >> email_text
4762	else
4763	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4764	fi
4765	mail $email_notification < email_text
4766	printf "\n *** email notification sent to \"$email_notification\" "
4767	fi
4768	fi
4769
4770
4771
4772	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4773	cd $HOME
4774	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4775
4776	else
4777
4778
4779	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4780	# CHENDE AKTIONEN DURCHGEFUEHRT
4781
4782	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4783	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
4784	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4785	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4786	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4787	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4788	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4789	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4790	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4791	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4792	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4793	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4794	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4795	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4796	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4797	if [[ $use_openmp = true ]]
4798	then
4799	mrun_com=${mrun_com}" -O $threads_per_task"
4800	fi
4801	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4802	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
4803	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4804	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4805	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4806	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4807	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4808	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4809	[[ "$max_par_io_str" != "" ]] && mrun_com=${mrun_com}" -w $max_par_io_str"
4810	if [[ $do_remote = true ]]
4811	then
4812	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4813	fi
4814
4815
4816	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4817	jobfile=jobfile.$RANDOM
4818
4819
4820	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4821	echo "mkdir $TEMPDIR" >> $jobfile
4822	echo "cd $TEMPDIR" >> $jobfile
4823
4824
4825	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4826	if [[ $do_trace = true ]]
4827	then
4828	echo "set -x" >> $jobfile
4829	else
4830	echo "set +vx" >> $jobfile
4831	fi
4832
4833
4834	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4835	# DATEI FUER DEN JOB
4836	if [[ $( echo $host \| cut -c1-5 ) = lcsgi \|\| $host = ibmkisti ]]
4837	then
4838
4839	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4840	# KOPIEREN
4841	if [[ $restart_run != true ]]
4842	then
4843	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4844	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4845	fi
4846
4847	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4848	# (BEI JOBS AUF LOKALEM RECHNER REICHT CP)
4849	echo "set -x" >> $jobfile
4850	if [[ $host = $localhost ]]
4851	then
4852	echo "cp -r $working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4853	else
4854	if [[ $host != ibmkisti ]]
4855	then
4856	echo "scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4857	else
4858	# on KISTI's IBM firewall is only opened on interactive node
4859	echo "localdir=\`pwd\`" >> $jobfile
4860	echo "ssh $remote_username@gaiad \"cd \$localdir; scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
4861	fi
4862	fi
4863	echo "export SOURCES_COMPLETE=true" >> $jobfile
4864
4865	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4866	# ARBEITSVERZEICHNIS VERSCHIEBEN
4867	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4868	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4869	echo "execute_mrun=true" >> $jobfile
4870	echo " " >> $jobfile
4871
4872	else
4873
4874	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4875	# SOWIE GEGEBENENFALLS DES MAKEFILES
4876	if [[ $do_compile = true ]]
4877	then
4878
4879	source_catalog=SOURCES_FOR_RUN_$fname
4880
4881	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4882	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4883	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4884	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4885	echo "export SOURCES_COMPLETE=true" >> $jobfile
4886	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4887
4888	for filename in $source_list
4889	do
4890	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4891	echo "cat > $filename << \"%END%\"" >> $jobfile
4892	cat $source_catalog/$filename >> $jobfile
4893	echo " " >> $jobfile
4894	echo "%END%" >> $jobfile
4895	echo " " >> $jobfile
4896	done
4897
4898	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4899	echo "cat > Makefile << \"%END%\"" >> $jobfile
4900	cat $source_catalog/Makefile >> $jobfile
4901	echo " " >> $jobfile
4902	echo "%END%" >> $jobfile
4903	echo " " >> $jobfile
4904
4905	echo "cd - > /dev/null" >> $jobfile
4906
4907	fi
4908
4909
4910	# ABSPEICHERN DER KONFIGURATIONSDATEI
4911	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4912	echo "cat > $config_file << \"%END%\"" >> $jobfile
4913	cat $config_file >> $jobfile
4914	echo "%END%" >> $jobfile
4915	echo " " >> $jobfile
4916
4917
4918	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
4919	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4920	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
4921	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
4922	echo "%END%" >> $jobfile
4923	echo "chmod u+x $mrun_script_name" >> $jobfile
4924	echo "execute_mrun=true" >> $jobfile
4925	echo " " >> $jobfile
4926
4927	fi
4928
4929
4930	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
4931	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
4932	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
4933	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
4934	if [[ $do_remote = true ]]
4935	then
4936	(( i = 0 ))
4937	while (( i < iin ))
4938	do
4939	(( i = i + 1 ))
4940	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
4941	if [[ "${transin[$i]}" = job ]]
4942	then
4943	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
4944	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
4945	echo " " >> $jobfile
4946	echo "%END%" >> $jobfile
4947	else
4948	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
4949	fi
4950
4951	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
4952	echo "if [[ \$? = 1 ]]" >> $jobfile
4953	echo "then" >> $jobfile
4954	echo " echo \" \" " >> $jobfile
4955	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
4956	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
4957	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
4958	echo " execute_mrun=false" >> $jobfile
4959	echo "fi" >> $jobfile
4960	done
4961	fi
4962
4963	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
4964	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
4965	echo "LOCAL_PWD=$working_directory" >> $jobfile
4966	echo "export LOCAL_PWD" >> $jobfile
4967
4968	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
4969	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
4970	echo "export LOCAL_MRUN_PATH" >> $jobfile
4971
4972	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
4973	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
4974	then
4975	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
4976	fi
4977
4978	# MRUN AUF ZIELRECHNER AUFRUFEN (queue is workaround for ibmkisti)
4979	echo "set -x" >> $jobfile
4980	echo "queue=$queue" >> $jobfile
4981	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
4982
4983	echo 'ls -al; echo `pwd`' >> $jobfile
4984	echo "cd \$HOME" >> $jobfile
4985	echo "rm -rf $TEMPDIR" >> $jobfile
4986
4987
4988
4989
4990	# JOB PER SUBJOB STARTEN
4991	if [[ $silent = false ]]
4992	then
4993	printf "\n "
4994	else
4995	printf "\n\n"
4996	fi
4997
4998	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $jobfile
4999	rm -rf $jobfile
5000
5001
5002	fi # ENDE REMOTE-TEIL
5003
5004
5005
5006	# ENDE DER PROZEDUR

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