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source: palm/trunk/SCRIPTS/mrun @ 823

Last change on this file since 823 was 823, checked in by maronga, 12 years ago
bugfix for namelist file check (mrun)
Property svn:keywords set to `Id Rev`
File size: 189.0 KB

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1	#!/bin/ksh
2	# mrun - script for running PALM jobs
3	# $Id: mrun 823 2012-02-16 12:21:53Z maronga $
4
5	# Procedure for interactive/batch PALM runs (initial runs and automatic
6	# restart runs)
7
8	# Last changes:
9	# 03/03/94 - Siggi - Entwicklungsbeginn
10	# 21/03/94 - Siggi - Entwicklungsabschluss (Version 1.0)
11	# 09/12/94 - Siggi - allexport unterbunden; statt dessen werden jetzt ein-
12	# zelne Variable exportiert. Dies ist noetig, weil an-
13	# sonsten irgendein Speicher ueberlaeuft und von mrun
14	# aufgerufene Programme (z.B. stageout) mit Fehlern
15	# abbrechen (too many arguments)
16	# 20/06/95 - Siggi - noclobber muss explizit abgeschaltet, da jetzt
17	# defaultmaessig im RRZN-Profile eingeschaltet
18	# 10/06/97 - Siggi - Zusaetzliche Option -C bei cpp, damit // nicht
19	# wegfallen
20	# 25/04/00 - Siggi - Version 1.5
21	# remote_addres und remote_user in return_addres bzw.
22	# return_username umbenannt, return_username wird dem
23	# mrun-Aufruf im Job ueber Option -U mitgegeben.
24	# Neue Variable remote_username, die beim interaktiven
25	# mrun-Aufruf zwingend ueber die neue Option -u oder
26	# in der Konfigurationsdatei angegeben werden muss.
27	# 08/02/01 - Siggi - Alle mrun-Meldungen ins englische uebersetzt,
28	# Version 1.7
29	# 05/05/02 - Siggi - Uebersetzungen mittels make-Mechanismus moeglich
30	# 21/11/02 - Siggi - ENV-Variable XLFRTEOPTS wird vor Ausfuehrung auf
31	# IBM gesetzt, um Record-Laenge der NAMELIST-Dateien,
32	# zu bestimmen; Praeprozessoroptionen haben nun alle
33	# die Form -Dtext=text, weil auf IBM sonst text durch
34	# die leere Zeichenkette ersetzt wird
35	# 01/08/03 - Siggi - Test of implementing dvrp+1PE on ibm
36	# 07/01/04 - Siggi - additional preprocessor directive for ibm included
37	# (-D$OMP=OMP) in order to avoid problems with
38	# OMP_NUM_THREADS
39	# 04/01/05 - Siggi - archiving on hanni and berni is done in separate
40	# tar files, one for each node used
41	# 07/01/04 - Siggi - old code for t3e, vpp and hpcs eliminated
42	# 09/01/05 - Siggi - workaround for getting the IP address on gfdl3
43	# 17/01/05 - Siggi - job for data transfer to local machine now within
44	# job class c1 (HLRN)
45	# 27/01/05 - Siggi - IP address workaround for gfdl3 removed
46	# 28/01/05 - Siggi - tar-filenames on $PERM (HLRN) now include the
47	# base filename and cycle number
48	# 16/02/05 - Gerald - hababai validated
49	# 14/03/05 - Siggi - abort on NEC after first runtime error (F_ERRCNT)
50	# 29/03/05 - Marcus - berni*-en0 validated
51	# 21/04/05 - Siggi - transfer-job-protocol for avs-data is no more stored
52	# 24/04/05 - Siggi - netcdf support on lcmuk
53	# 25/04/05 - Siggi - netcdf support on gfld3 (decalpha)
54	# 11/05/05 - Siggi - files with non-numeric extensions (.xxx after cycle
55	# number) can now be used within interactive runs
56	# 12/05/05 - Siggi - netcdf support on ibm
57	# 13/05/05 - Siggi - error in tar-filenames on $PERM (HLRN) removed
58	# 18/05/05 - Siggi - netcdf support on nec
59	# 24/05/05 - Siggi - netcdf support on ibms
60	# 14/06/05 - Siggi - sleep interval after submit of restart job increased
61	# to 30 seconds
62	# 28/06/05 - Siggi - bora adjusted to new intel compiler (LD_LIBRARY_
63	# PATH is temporarily set)
64	# 07/09/05 - Siggi - setting of MP_EAGER_LIMIT switched off because it
65	# caused warnings in the job protocol
66	# 20/10/05 - Siggi - update of netcdf-version on decalpha (gfdl3)
67	# 25/10/05 - Siggi - error in listing files for getting the cycle number
68	# removed
69	# 26/10/05 - Siggi - new paths for dvrp-library, transfer of catalogs
70	# realized by file attribute trpe
71	# 28/10/05 - Siggi - if existing, the file extension is output in case
72	# of missing input file - no job abort in case of
73	# missing input files with file extensions
74	# (preliminary solution)
75	# 31/10/05 - Siggi - data transfer from nech now within seperate job
76	# 04/11/05 - Siggi - netcdf 3.6.0-p1 on ibmh/ibmb
77	# 07/12/05 - Siggi - gallego and elephanta admitted
78	# 30/12/05 - Siggi - gfdl5 (ibmy) admitted
79	# 10/01/06 - Siggi - cpp directive for NetCDF 64bit support
80	# 20/01/06 - Siggi - cpp directive for ibmy
81	# 09/02/06 - Siggi - ibmy admitted for batch mode
82	# 13/04/06 - Siggi - ostria admitted
83	# 18/04/06 - Siggi - usage of OpenMP implemented (additional option -O)
84	# 10/05/06 - Siggi - environment variable XLSMPOPTS set on IBM for
85	# optimization of OpenMP runs (option stacksize is
86	# necessary for large gridpoint numbers because
87	# otherwise a segmentation fault occurs)
88	# 23/05/05 - Siggi - lctit (SUN Fire X4600) admitted
89	# 21/08/06 - Siggi - standard mrun path on scirocco is as on bora
90	# 23/08/06 - Siggi - netcdf support for scirocco (notebook)
91	# 20/09/06 - Marcus - add DVRP library on nech
92	# 24/10/06 - Siggi - Environment variables for PALM steering are written
93	# on local NAMELIST file ENVPAR
94	# 24/11/06 - Siggi - levanto admitted, maestro switched to ifc 9.1
95	# 28/11/06 - Siggi - call to interpret_config.x_levanto because of SuSe 10
96	# 06/02/07 - Siggi - add DVRP library on lcmuk
97	# 07/02/07 - Siggi - revision of source code handling, source code is
98	# now expected in directory given by source_path and
99	# not in the current working directory, source code
100	# files provided in add_source_path are allways
101	# compiled, source code to be compiled is allways
102	# sampled in SOURCES_FOR_RUN_$fname which is a
103	# subdirectory of the current working directory,
104	# -s TEST changed to -s WRITE_PERMIT or -s WP,
105	# adapted for RIAM (neck)
106	# bugfix for cycle number of output file (extout)
107	# all hpmuk-related code removed
108	# 14/02/07 - Siggi - dvrp support for neck added
109	# 28/02/07 - Siggi - empty lines in configuration file are accepted
110	# mrun_path replaced by PALM_BIN,
111	# all machines are calling interpret_config.x
112	# 14/03/07 - Siggi - fimm admitted, revision number added to terminal
113	# output
114	# 16/03/07 - Siggi - adjustments for lctit
115	# 29/03/07 - Siggi - global revision transfered to batch job by new
116	# option -G
117	# 30/03/07 - Siggi - compilation "by hand" removed, cpp-directives/options
118	# + netcdf/dvrp-options are read from configuration
119	# file, host identifier (local_host) is read from
120	# config file, code related to ftp filetransfer
121	# removed (incl. option -f)
122	# 19/06/07 - Siggi - time limit for cdata jobs increased
123	# 25/07/07 - Siggi - two sets of executables can be started on lcmuk,
124	# if new option -Y (coupling) is given,
125	# output of executables to aout_output removed,
126	# messages are immediately written to stdout instead
127	# 03/08/07 - Marcus - add XOPT="-X $numprocs" for lcfimm
128	# 09/08/07 - Marcus - workaround on lcfimm to propagate environment
129	# variables out to the nodes in coupled mode -disabled-
130	# 13/08/07 - Marcus - start local restart jobs per ssh on lcfimm
131	# 28/08/07 - Marcus - completely remove workaround on lcfimm to propagate
132	# environment variables out to the nodes in coupled mode
133	# 15/10/07 - Siggi - Preliminary adjustments for lctit, based on Jin's
134	# suggestions
135	# 19/10/07 - Marcus - further adjustments for lctit: add new optional
136	# argument -g group_number, admit all sla* node_usage
137	# queues
138	# 30/10/07 - Marcus - further adjustments for queues on lctit
139	# 14/02/08 - Bjoern - link of restart files with long file name possible
140	# 28/02/08 - Marcus - If environment variable link_local_output is set to
141	# true, mrun tries "ln -f" on local output and resorts
142	# to "cp" or "cp -r" on error
143	# 15/04/08 - Siggi - argument -c introduced to most of the subjob calls,
144	# which allows the user to choose his own job catalog
145	# by setting job_catalog in the configuration file
146	# (default is ~/job_queue),
147	# workaround for mpiexec with -env option,
148	# adjustments for lcxt4 (Bergen Center for Computational
149	# Science)
150	# 22/05/08 - Marcus - If environment variable link_local_input is set to
151	# true, mrun tries "ln -f" on local input and resorts
152	# to "cp" or "cp -r" on error
153	# 27/05/08 - Siggi - PATH is set to PALM_BIN everywhere (missing so far)
154	# 14/07/08 - Siggi - adjustments for lcsgih
155	# 08/08/08 - Marcus - typo removed in lcxt4 branch
156	# 17/09/08 - Siggi - restart mechanism adjusted for lcsgi
157	# 02/10/08 - BjornM - argument "-Y" modified, adjustments for coupled runs
158	# 21/10/08 - Siggi - bugfix for the case that -K has more than one
159	# argument
160	# 08/11/08 - Siggi - bugfix for depository path settings in configuration
161	# file
162	# 11/11/08 - Siggi - rules for using user code files changed: user
163	# code splitted into one file per subroutine,
164	# user can provide his/her own makefile, only
165	# default source-code filenames are allowed
166	# 14/11/08 - Siggi - cond1 and cond2 are part of the depository name
167	# 08/01/09 - Siggi - mpi module on sgi machines to be used can be set
168	# with environment variable mpilib
169	# 13/01/09 - Siggi - totalview on hice/bice can be used in debug mode
170	# using environment variable totalview
171	# 25/02/09 - Siggi - cputime-option (-t) is allowed to be omitted for
172	# interactive runs
173	# 05/03/09 - Siggi - adjustments for new NEC-SX9 at RIAM (necriam)
174	# 16/03/09 - Siggi - dvrp_lib, dvrp_inc replaced by dvr_lib, dvr_inc,
175	# dvr streaming server is automatically started using
176	# new variable dvr_server and a configuration file
177	# .dvrserver.config,
178	# processing of dvr output files using new script
179	# process_dvr_output implemented, in order to make
180	# dvr application more user friendly
181	# 20/03/09 - Marcus - update of n1ge command for lctit
182	# 16/04/09 - Siggi - new option -y for precursor (uncoupled) ocean runs
183	# to be followed by a coupled atmosphere-ocean run
184	# 21/04/09 - Siggi - adjustments for new IBM at DKRZ, which is now ibmh
185	# 24/06/09 - BjornM - adjustments for coupled/precursor runs on ibmy
186	# 08/07/09 - Siggi - default value for email_notification is none,
187	# option -e added to subjob
188	# 19/08/09 - Marcus - MPI debug option
189	# 21/08/09 - Marcus - totalview on hice/bice also available for mvapich2
190	# 25/08/09 - BjornM - adpated for lck
191	# 26/08/09 - Siggi - additional environment variables for mpt on ice2
192	# 26/08/09 - Marcus - adjustment for ice2 on lcsgib
193	# 29/09/09 - Siggi - default value for archiving is false, option "-A"
194	# switches on archiving, archiving on SGI-ICE enabled
195	# 16/10/09 - Carolin- adjustments for archiving on SGI-ICE of binary files;
196	# adjustment for special1q
197	# 18/12/09 - Carolin- modification of archiving (permq)
198	# 01/02/10 - Siggi - adapted for lcxt5m and lckyoto (Fujitsu HX600)
199	# 03/02/10 - Siggi - make options (mopts) to be set by configuration file
200	# implemented
201	# 08/02/10 - Siggi - loading of modules now controlled via configuration
202	# file (modules)
203	# 02/03/10 - Siggi - for each block in the configuration file, separate
204	# utility programs are used, combine_plot_fields is
205	# directly called and must not be given by an output
206	# command in the configuration file any more
207	# 15/06/10 - Rieke - ssh from compute nodes to login nodes on hosts
208	# lcsgih/lcsgib is done using the names
209	# hicegate0/bicegate0 instead of the IP addresses
210	# 17/08/10 - BjornM - adjustments for interactive runs on lcxt4
211	# 07/09/10 - Siggi - bugfix for wrong netcdf/3.6.3 module on lcsgi
212	# 08/12/10 - Siggi - new handling of openmp/hybrid runs, option -O
213	# has now argument threads_per_task
214	# adjustments for Kyushu Univ. (lcrte, ibmku)
215	# 14/12/10 - Siggi - adjustments for new Tsubame system at Tokyo
216	# institute of technology (lctit)
217	# 23/12/10 - Micha - different number of processors in ocean and
218	# atmosphere is now allowed
219	# 02/02/10 - Siggi - further adjustments on Tsubame and concerning openMP
220	# usage
221	# 09/03/10 - Siggi - adjustments for ibmkisti, mpt bugfix for netCDF4
222	# usage, totalview usage extended
223	# 17/03/11 - Siggi - adjustments for openmp usage on ibmkisti
224	# 03/04/11 - Micha - added lckordi
225	# 06/04/11 - BjornM - bugfix for runs with mpt on lcsgi
226	# 17/08/11 - Siggi - extensions for impi library
227	# 18/08/11 - Siggi - bugfix for local append of output files with suffix
228	# (.nc)
229	# 18/08/11 - Marcus - support for Linux OS with German locale
230	# - properly report hosts on general Linux clusters
231	# 29/08/11 - BjornW - adapted for lcflow (ForWind cluster in Oldenburg)
232	# 29/08/11 - Carolin- initiating restart-run: adjustment of the path at
233	# IMUK
234	# 15/09/11 - Siggi - new option -w tp set the maximum number of parallel
235	# io streams, option -T is obligatory from now on
236	# 25/01/12 - BjornM - a namelist file check prior to the model run has
237	# been implemented (check_namelist_files).
238	# New option -z can be used to skip the check
239	# 03/02/12 - BjornM - namelist file check temporary disabled
240	# until severel bugs are fixed
241	# 08/02/12 - BjornM - bugfixes: skipping namelist file check in case of
242	# restart runs. check is now possible with topography
243	# and the -v (silent) option is considered
244	# 14/02/12 - BjornM/- bugfix: removed slash in \$queue, changed default
245	# Farah queue for lcsgi to testq, since bigq is not
246	# available on ice1
247	# 16/02/12 - BjornM - bugfix: replaced $localhost by $host in the ENVPAR
248	# file, which is generated for the namelist file check
249
250	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
251
252	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
253	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
254	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
255
256	AddFilenames=""
257	additional_conditions=""
258	add_source_path=""
259	afname=""
260	archive_save=true
261	archive_system=none
262	check_namelist_files=true
263	compiler_name=""
264	cond1=""
265	cond2=""
266	config_file=.mrun.config
267	coupled_dist=""
268	coupled_mode="mpi1"
269	cpp_opts=""
270	cpp_options=""
271	cpumax=0
272	cpurest=0
273	delete_temporary_catalog=true
274	do_batch=false
275	do_compile=true
276	do_remote=false
277	do_stagein=true
278	do_stageout=true
279	do_trace=false
280	email_notification="none"
281	exclude=""
282	executable=""
283	execution_error=false
284	fimm=false
285	fname=test
286	fromhost=""
287	global_revision=""
288	group_number=none
289	host=""
290	host_file=""
291	hp=""
292	ignore_archive_error=false
293	input_list=""
294	interpreted_config_file=""
295	job_catalog="~/job_queue"
296	job_on_file=""
297	keep_data_from_previous_run=false
298	link_local_input=false
299	link_local_output=false
300	localhost_realname=$(hostname)
301	local_compile=false
302	local_dvrserver_running=.FALSE.
303	locat=normal
304	mainprog=""
305	makefile=""
306	max_par_io_str=""
307	mc=$0
308	while [[ $(echo $mc \| grep -c "/") != 0 ]]
309	do
310	mc=`echo $mc \| cut -f2- -d"/"`
311	done
312	module_calls=""
313	mrun_script_name=$mc
314	netcdf_inc=""
315	netcdf_lib=""
316	netcdf_support=false
317	node_usage=default
318	numprocs=""
319	numprocs_atmos=0
320	numprocs_ocean=0
321	OOPT=""
322	openmp=false
323	output_list=""
324	package_list=""
325	punkte="..........................................................."
326	p3d_suffix=""
327	queue=none
328	read_from_config=""
329	restart_run=false
330	if [[ `hostname` = rte10 ]]
331	then
332	return_addres=133.5.185.60
333	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
334	elif [[ `hostname` = climate0 ]]
335	then
336	return_addres=165.132.26.68
337	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
338	else
339	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
340	fi
341	return_password=""
342	return_username=$LOGNAME
343	remotecall=false
344	remote_username=""
345	run_coupled_model=false
346	run_mode=""
347	scirocco=false
348	store_on_archive_system=false
349	striche=" ----------------------------------------------------------------------------"
350	silent=false
351	source_list=""
352	source_path=SOURCE
353	tasks_per_node=""
354	threads_per_task=1
355	tmpcreate=false
356	tmp_data_catalog=""
357	transfer_problems=false
358	usern=$LOGNAME
359	use_openmp=false
360	working_directory=`pwd`
361	TOPT=""
362	XOPT=""
363	zeit=$( date \| cut -c 12-19 )
364
365	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
366	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
367
368	typeset -R30 calltime
369	typeset -L20 spalte1
370	typeset -L40 spalte2
371	typeset -L60 spalte3
372	typeset -L35 string1=`date`
373	typeset -L12 string2=$usern
374	typeset -L12 string3=$localhost_realname
375	typeset -L12 string4
376	typeset -L12 string5
377	typeset -L30 version="MRUN 2.0 Rev$Rev: 823 $"
378
379
380
381	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
382	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
383
384	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
385	# EXPORTIERT WERDEN
386	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
387	export group_number input_list memory numprocs output_list queue run_mode
388
389
390
391	# FEHLERBEHANDLUNG
392	# BEI EXIT:
393	trap 'rm -rf $working_directory/tmp_mrun
394	if [[ $locat != localhost ]]
395	then
396	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
397	# then
398	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
399	#MRUN-calls on $localhost
400	#
401	#date and time user localhost remotehost termination mrun-command
402	#--------------------------------------------------------------------------------------------------------------------
403	#%STATEND%
404	# chmod 666 ${mrun_path}/statistik/mrun_statistik
405	# fi
406	#
407	# # EINTRAG IN DIE STATISTIK-DATEI
408	# string4=$host
409	# string5=$locat
410	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
411	# then
412	# if [[ $do_batch = true ]]
413	# then
414	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
415	# else
416	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
417	# fi
418	# fi
419	echo " " > /dev/null
420	fi
421
422	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
423	then
424
425	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
426	(( i = 0 ))
427	while (( i < iec ))
428	do
429	(( i = i + 1 ))
430	printf "\n *** Execution of ERROR-command:\n"
431	printf " >>> ${err_command[$i]}\n"
432	eval ${err_command[$i]}
433	done
434	if [[ -n $interpreted_config_file ]] then
435	rm -rf $interpreted_config_file
436	fi
437	if [[ -n .mrun_environment ]] then
438	rm -rf .mrun_environment
439	fi
440	if [[ $tmpcreate = true ]]
441	then
442	printf "\n *** Contents of \"$TEMPDIR\":\n"
443	ls -al; cd
444	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
445	fi
446	if [[ "$dvrserver_id" != "" ]]
447	then
448	echo "+++ killing dvrserver_id=$dvrserver_id"
449	kill $dvrserver_id
450	fi
451	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
452	then
453	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
454	fi
455	printf "\n\n+++ MRUN killed \n\n"
456	elif [[ $locat != control_c ]]
457	then
458	printf "\n\n --> all actions finished\n\n"
459	printf " Bye, bye $usern !!\n\n"
460	fi' exit
461
462
463	# BEI TERMINAL-BREAK:
464	trap 'rm -rf $working_directory/tmp_mrun
465	rm -rf $working_directory/tmp_check_namelist_files
466	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
467	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
468	then
469	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
470	fi
471	if [[ "$dvrserver_id" != "" ]]
472	then
473	echo "+++ killing dvrserver_id=$dvrserver_id"
474	kill $dvrserver_id
475	fi
476	printf "\n+++ MRUN killed by \"^C\" \n\n"
477	locat=control_c
478	exit
479	' 2
480
481
482	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
483	# BEEN SET
484	if [[ "$PALM_BIN" = "" ]]
485	then
486	printf "\n +++ environment variable PALM_BIN has not been set"
487	printf "\n please set it to the directory where the PALM scripts are located"
488	locat=palm_bin; exit
489	fi
490	export PATH=$PALM_BIN:$PATH
491
492
493
494	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
495	# FUER FOLGEJOBS BENOETIGT WIRD
496	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vw:xX:yY:z option
497	do
498	case $option in
499	(a) afname=$OPTARG;;
500	(A) store_on_archive_system=true; mc="$mc -A";;
501	(b) do_batch=true; mc="$mc -b";;
502	(B) delete_temporary_catalog=false; mc="$mc -B";;
503	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
504	(C) restart_run=true; mc="$mc -C";;
505	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
506	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
507	(F) job_on_file="-D"; mc="$mc -F";;
508	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
509	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
510	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
511	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
512	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
513	(I) ignore_archive_error=true; mc="$mc -I";;
514	(k) keep_data_from_previous_run=true; mc="$mc -k";;
515	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
516	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
517	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
518	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
519	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
520	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
521	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
522	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
523	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
524	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
525	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
526	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
527	(S) read_from_config=false; mc="$mc -S";;
528	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
529	(T) mrun_tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
530	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
531	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
532	(v) silent=true; mc="$mc -v";;
533	(w) max_par_io_str=$OPTARG; mc="$mc -w$OPTARG";;
534	(x) do_trace=true;set -x; mc="$mc -x";;
535	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
536	(y) ocean_file_appendix=true; mc="$mc -y";;
537	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
538	(z) check_namelist_files=false; mc="$mc -z";;
539	(\?) printf "\n +++ unknown option $OPTARG \n"
540	printf "\n --> type \"$0 ?\" for available options \n"
541	locat=parameter;exit;;
542	esac
543	done
544
545
546	# EVTL. POSITIONSPARAMETER EINLESEN
547	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
548	shift OPTIND-1
549
550
551	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
552	if [[ "$1" = "?" ]]
553	then
554	(printf "\n *** mrun can be called as follows:\n"
555	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. <modus>\n"
556	printf "\n Description of available options:\n"
557	printf "\n Option Description Default-Value"
558	printf "\n -a base name of input files equiv. -d"
559	printf "\n -A archiving when using file-attribute fl"
560	printf "\n -b batch-job on local machine ---"
561	printf "\n -B do not delete temporary directory at end ---"
562	printf "\n -c configuration file .mrun.config"
563	printf "\n -d base name of files attached to program test"
564	printf "\n -D preprocessor(cpp)-directives \"\" "
565	printf "\n -F create remote job file only ---"
566	printf "\n -h execution host $localhost_realname"
567	printf "\n -i INPUT control list \"\" "
568	printf "\n -I archiving errors of previous batch-jobs"
569	printf "\n will be ignored"
570	printf "\n -k keep data from previous run"
571	printf "\n -K additional conditions for controling"
572	printf "\n usage of conditional code and"
573	printf "\n env-variables in configuration file \"\" "
574	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
575	printf "\n -M Makefile name Makefile"
576	printf "\n -n node usage (shared/not_shared) depending on -h"
577	printf "\n -o OUTPUT control list \"\" "
578	printf "\n -O use OpenMP ---"
579	printf "\n -p software package list \"\" "
580	printf "\n -q queue \"$queue\" "
581	printf "\n -r run control list (combines -i -o) \"\" "
582	printf "\n -s filenames of routines to be compiled \"\" "
583	printf "\n must end with .f, .f90, .F, or .c !"
584	printf "\n use \"..\" for more than one file and wildcards"
585	printf "\n -s TEST compiles all files with w-permit"
586	printf "\n -S config file interpreted by shellscript ---"
587	printf "\n -t allowed cpu-time in seconds (batch) 0"
588	printf "\n -T tasks per node depending on -h"
589	printf "\n -u username on remote machine \"\" "
590	printf "\n -v no prompt for confirmation ---"
591	printf "\n -w maximum parallel io streams as given by -X"
592	printf "\n -x tracing of mrun for debug purposes ---"
593	printf "\n -X # of processors (on parallel machines) 1"
594	printf "\n -y add appendix \"_O\" to all local output"
595	printf "\n files (ocean precursor runs followed by"
596	printf "\n coupled atmosphere-ocean runs) ---"
597	printf "\n -Y run coupled model, \"#1 #2\" with"
598	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
599	printf "\n "
600	printf "\n Possible values of positional parameter <modus>:"
601	printf "\n \"?\" - this outline \n\n") \| more
602	exit
603	elif [[ "$1" != "" ]]
604	then
605	printf "\n +++ positional parameter $1 unknown \n"
606	locat=parameter; exit
607	fi
608
609
610
611	# KURZE STARTMELDUNG
612	printf "\n*** $version "
613	printf "\n will be executed. Please wait ..."
614
615
616
617	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
618	if [[ ! -f $config_file ]]
619	then
620	printf "\n\n +++ configuration file: "
621	printf "\n $config_file"
622	printf "\n does not exist"
623	locat=connect; exit
624	fi
625
626
627	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
628	line=""
629	grep "%host_identifier" $config_file > tmp_mrun
630	while read line
631	do
632	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
633	then
634	HOSTNAME=`echo $line \| cut -d" " -s -f2`
635	host_identifier=`echo $line \| cut -d" " -s -f3`
636	if [[ $localhost_realname = $HOSTNAME ]]
637	then
638	localhost=$host_identifier
639	break
640	fi
641	fi
642	done < tmp_mrun
643
644	if [[ "$localhost" = "" ]]
645	then
646	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
647	printf "\n for local host \"$localhost_realname\"."
648	printf "\n Please add line"
649	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
650	printf "\n to the configuration file."
651	locat=localhost; exit
652	fi
653
654
655	# HOSTSPEZIFISCHE VARIABLEN SETZEN
656	case $localhost_realname in
657	(r1\|r2\|h01\|b01) archive_system=tivoli;;
658	(cs*) archive_system=ut;;
659	(fimm.bccs.uib.no) fimm=true;;
660	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
661	(scirocco) scirocco=true;;
662	esac
663
664
665
666	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
667	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
668	[[ "$afname" = "" ]] && afname=$fname
669
670
671	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
672	if [[ "$run_mode" != "" ]]
673	then
674	input_list="$input_list $run_mode"
675	output_list="$output_list $run_mode"
676	fi
677
678
679	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
680	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
681	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
682	# STARTET)
683	if [[ "$fromhost" = "" ]]
684	then
685	fromhost=$localhost
686	fi
687
688
689	# PRUEFEN, OB MRUN NUR TESTWEISE AUF DER LOKALEN MASCHINE KOMPILIEREN SOLL
690	if [[ "$source_list" = LOCAL_COMPILE_TEST ]]
691	then
692	source_list=TEST
693	local_compile=true
694	host=$localhost
695	fi
696
697
698	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
699	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
700	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
701	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
702	if [[ -n $host && "$host" != $localhost ]]
703	then
704	do_batch=true
705	do_remote=true
706	case $host in
707	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|nech\|necriam\|lckyoto\|lcsgib\|lcsgih\|unics\|lcxt4\|lcxt5m\|lck\|lckordi) true;;
708	(*) printf "\n"
709	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
710	printf "\n is not available"
711	locat=nqs; (( iec = 0 )); exit;;
712	esac
713	else
714	host=$localhost
715	fi
716
717
718	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
719	if [[ -n $additional_conditions ]]
720	then
721	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
722	cond1=`echo $additional_conditions \| cut -d" " -f1`
723	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
724	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
725	if [[ -n $dummy ]]
726	then
727	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
728	locat=options; exit
729	fi
730	block=_$cond1
731	[[ -n $cond2 ]] && block=${block}_$cond2
732	fi
733
734
735	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
736	if [[ $run_coupled_model = true ]]
737	then
738
739	if [[ -n $coupled_dist ]]
740	then
741
742	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
743	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
744
745	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
746	then
747
748	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
749	printf "\n PEs (total) : $numprocs"
750	printf "\n PEs (atmosphere): $numprocs_atmos"
751	printf "\n PEs (ocean) : $numprocs_ocean"
752	locat=coupling; exit
753
754	fi
755
756	else
757
758	(( numprocs_ocean = $numprocs / 2 ))
759	(( numprocs_atmos = $numprocs / 2 ))
760
761	fi
762	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
763
764	# GET coupled_mode FROM THE CONFIG FILE
765	line=""
766	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
767	while read line
768	do
769	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && ( $(echo $line \| cut -d" " -s -f4) = $cond1 \|\| $(echo $line \| cut -d" " -s -f4) = $cond2 ) ]]
770	then
771	coupled_mode="mpi2"
772	fi
773	done < tmp_mrun
774
775	fi
776
777
778	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
779	# ARCHIVIERUNG FEHLGESCHLAGEN IST
780	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
781	then
782	if [[ $ignore_archive_error = false ]]
783	then
784	printf "\n +++ data archiving of previous run failed"
785	printf "\n see directory \~/job_queue on remote machine"
786	locat=archive; exit
787	else
788	printf "\n +++ warning: data archiving in a previous run failed"
789	printf "\n MRUN continues, trying to get backup copy"
790	fi
791	fi
792
793
794
795	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
796	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
797	if [[ "$read_from_config" = false ]]
798	then
799
800	[[ $silent = false ]] && printf "\n Reading the configuration file... "
801	while read zeile
802	do
803	[[ $silent = false ]] && printf "."
804
805
806	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
807	# ERSETZEN
808	eval zeile=\"$zeile\"
809
810
811	# INTERPRETATION DER ZEILE
812	if [[ "$(echo $zeile)" = "" ]]
813	then
814	# LEERZEILE, KEINE AKTION
815	continue
816
817	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
818	then
819
820	# ZEILE IST KOMMENTARZEILE
821	true
822
823	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
824	then
825
826	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
827	zeile=$(echo $zeile \| cut -c2-)
828	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
829	var=`echo $zeile \| cut -d" " -f1`
830	value=`echo $zeile \| cut -d" " -s -f2`
831	for_host=`echo $zeile \| cut -d" " -s -f3`
832	for_cond1=`echo $zeile \| cut -d" " -s -f4`
833	for_cond2=`echo $zeile \| cut -d" " -s -f5`
834
835	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
836	then
837
838	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
839	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
840	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
841
842
843	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
844	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
845	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
846	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
847	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
848	# KONFIGURATIONSDATEI
849	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
850	then
851	eval $var=\$value
852
853	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
854	if [[ $do_trace = true ]]
855	then
856	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
857	fi
858	fi
859
860	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
861	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
862	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
863	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
864	if [[ $var = host ]]
865	then
866	if [[ -n $host && "$host" != $localhost ]]
867	then
868	do_batch=true
869	do_remote=true
870	case $host in
871	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxt4\|lcxt5m\|lck\|lckordi) true;;
872	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
873	printf "\n is not available"
874	locat=nqs; exit;;
875	esac
876	else
877	host=$localhost
878	fi
879	fi
880
881	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
882	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
883	# DEN PROGRAMMEN BENOETIGT WERDEN
884	export $var
885	fi
886
887
888
889
890	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
891	then
892
893	# ZEILE DEFINIERT ERROR-KOMMANDO
894	(( iec = iec + 1 ))
895	zeile=$(echo $zeile \| cut -c4-)
896	err_command[$iec]="$zeile"
897
898	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
899	then
900
901	# ZEILE DEFINIERT INPUT-KOMMANDO
902	(( iic = iic + 1 ))
903	zeile=$(echo $zeile \| cut -c4-)
904	in_command[$iic]="$zeile"
905
906	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
907	then
908
909	# ZEILE DEFINIERT OUTPUT-KOMMANDO
910	(( ioc = ioc + 1 ))
911	zeile=$(echo $zeile \| cut -c4-)
912	out_command[$ioc]="$zeile"
913
914	else
915
916	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
917	# s2a: in/out - Feld
918	# s2b: loc - Feld (optional)
919	# s2c: tr/ar - Feld (optional)
920	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
921	s1=`echo $zeile \| cut -d" " -f1`
922	s2=`echo $zeile \| cut -d" " -s -f2`
923	s2a=$(echo $s2 \| cut -d":" -f1)
924	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
925	then
926	s2b=""
927	s2c=""
928	else
929	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
930	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
931	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
932	fi
933	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
934	s3=`echo $zeile \| cut -d" " -f3`
935	s4=`echo $zeile \| cut -d" " -s -f4`
936	s5=`echo $zeile \| cut -d" " -s -f5`
937	s6=`echo $zeile \| cut -d" " -s -f6`
938
939
940	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
941	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
942	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
943	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
944	# HANDEN SEIN MUSS (D.H. s2b = loc)
945	IFSALT="$IFS"; IFS="$IFS:"
946	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
947	then
948	found=false
949	for actual in $input_list
950	do
951	for formal in $s3
952	do
953	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
954	done
955	done
956	if [[ $found = true ]]
957	then
958	(( iin = iin + 1 ))
959	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
960	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
961	extin[$iin]=$s6
962	fi
963	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
964	then
965	found=false
966	for actual in $output_list
967	do
968	for formal in $s3
969	do
970	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
971	done
972	done
973	if [[ $found = true ]]
974	then
975	(( iout = iout + 1 ))
976	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
977	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
978	fi
979	elif [[ "$s2a" != in && "$s2a" != out ]]
980	then
981	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
982	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
983	locat=connect; exit
984	fi
985	IFS="$IFSALT"
986	fi
987	done < $config_file
988
989	else
990
991
992	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
993	[[ $silent = false ]] && printf "..."
994	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
995	export interpreted_config_file=.icf.$RANDOM
996
997
998
999	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
1000	# VERFUEGUNG STELLEN
1001	cat > .mrun_environment << %%END%%
1002	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
1003	config_file = '$config_file', do_remote = '$do_remote',
1004	do_trace = '$do_trace', host = '$host',
1005	input_list = '$input_list', icf = '$interpreted_config_file',
1006	localhost = '$localhost', output_list = '$output_list' /
1007
1008	%%END%%
1009
1010	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
1011	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
1012	mrun_memory=$memory
1013	mrun_group_number=$group_number
1014	mrun_cpumax=$cpumax
1015	mrun_numprocs=$numprocs
1016
1017	if [[ $localhost_realname = "sx-fep" ]]
1018	then
1019	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
1020	else
1021
1022	if [[ "$host" != $localhost ]]
1023	then
1024
1025	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
1026	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
1027	if [[ $? != 0 ]]
1028	then
1029	printf "\n\n +++ no interpret_config found"
1030	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
1031	locat=interpret_config; exit
1032	fi
1033	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
1034	$interpret_config_executable
1035
1036	else
1037
1038	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
1039	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
1040	then
1041	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
1042	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
1043	locat=interpret_config; exit
1044	else
1045	interpret_config${block}.x
1046	fi
1047
1048	fi
1049	fi
1050	rm .mrun_environment
1051
1052
1053	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
1054	chmod u+x $interpreted_config_file
1055	export PATH=$PATH:.
1056	. $interpreted_config_file
1057	rm $interpreted_config_file
1058
1059
1060	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
1061	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
1062	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
1063	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
1064	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
1065	[[ "$max_par_io_str" != "" ]] && maximum_parallel_io_streams=$max_par_io_str
1066	[[ "$mrun_tasks_per_node" != "" ]] && tasks_per_node=$mrun_tasks_per_node
1067
1068	fi
1069
1070
1071	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
1072	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
1073	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
1074	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
1075	if [[ "$SOURCES_COMPLETE" = "" ]]
1076	then
1077
1078	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
1079	# VEREINBART WURDE
1080	source_path=""
1081	line=""
1082	grep "%source_path" $config_file > tmp_mrun
1083	while read line
1084	do
1085	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1086	then
1087	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
1088	then
1089	global_source_path=`echo $line \| cut -d" " -f2`
1090	fi
1091	fi
1092	done < tmp_mrun
1093
1094	line=""
1095	found=false
1096	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
1097	while read line
1098	do
1099	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1100	then
1101	if [[ $found = true ]]
1102	then
1103	printf "\n\n +++ more than one source path found in configuration file"
1104	printf "\n for local host \"$localhost\" "
1105	locat=source_path; exit
1106	fi
1107	source_path=`echo $line \| cut -d" " -f2`
1108	found=true
1109	fi
1110	done < tmp_mrun
1111	rm tmp_mrun
1112
1113	if [[ "$source_path" = "" ]]
1114	then
1115	if [[ "$global_source_path" != "" ]]
1116	then
1117	source_path=$global_source_path
1118	else
1119	printf "\n\n +++ no source path found in configuration file"
1120	printf "\n for local host \"$localhost\" "
1121	locat=source_path; exit
1122	fi
1123	fi
1124	eval source_path=$source_path
1125
1126	if [[ ! -d $source_path ]]
1127	then
1128	printf "\n\n +++ source path \"$source_path\" on local host"
1129	printf "\n \"$localhost\" does not exist"
1130	locat=source_path; exit
1131	fi
1132
1133	fi
1134
1135
1136	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
1137	# DURCH OPTION -G MITGETEILT)
1138	if [[ "$global_revision" = "" && $host != "ibmkisti" ]]
1139	then
1140	global_revision=`svnversion $source_path 2>/dev/null`
1141	global_revision="Rev: $global_revision"
1142	fi
1143
1144
1145	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
1146	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
1147	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
1148	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
1149	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
1150	if [[ -n $host && "$host" != $localhost ]]
1151	then
1152	do_batch=true
1153	do_remote=true
1154	case $host in
1155	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxt4\|lcxt5m\|lck\|lckordi) true;;
1156	(*) printf "\n"
1157	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
1158	printf "\n is not available"
1159	locat=nqs; (( iec = 0 )); exit;;
1160	esac
1161	else
1162	host=$localhost
1163	fi
1164
1165
1166	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
1167	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1168	then
1169
1170	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
1171	if [[ ! -n $numprocs ]]
1172	then
1173	printf "\n"
1174	printf "\n +++ option \"-K parallel\" requires additional specification"
1175	printf "\n of the number of processors to be used by"
1176	printf "\n mrun-option \"-X\" or by environment-variable"
1177	printf "\n \"numprocs\" in the configuration file"
1178	locat=numprocs; (( iec = 0 )); exit
1179	fi
1180
1181	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
1182	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
1183	# GESAMTPROZESSORANZAHL IST
1184	if [[ "$tasks_per_node" = "" ]]
1185	then
1186	printf "\n"
1187	printf "\n +++ option \"-T\" (tasks per node) is missing"
1188	printf "\n set -T option or define tasks_per_node in the config file"
1189	locat=tasks_per_node; (( iec = 0 )); exit
1190	fi
1191	(( ival = $tasks_per_node ))
1192	(( pes = numprocs ))
1193	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1194	# then
1195	# (( pes = pes - 1 ))
1196	# fi
1197	(( ii = pes / ival ))
1198	if (( pes - ii * ival > 0 ))
1199	then
1200	printf "\n"
1201	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1202	printf "\n divisor of the total number of processors (option \"-X\")"
1203	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1204	locat=tasks_per_node; (( iec = 0 )); exit
1205	fi
1206
1207
1208	# IBMY HAT NUR EINEN KNOTEN
1209	if [[ $host = ibmy ]]
1210	then
1211	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1212	then
1213	printf "\n"
1214	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1215	printf "\n total number of processors (option \"-X\")"
1216	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1217	locat=tasks_per_node; (( iec = 0 )); exit
1218	fi
1219	fi
1220
1221
1222	# SETTINGS FOR SUBJOB-COMMAND
1223	TOPT="-T $tasks_per_node"
1224	OOPT="-O $threads_per_task"
1225
1226	# GESAMTZAHL DER KNOTEN BESTIMMEN
1227	if [[ "$tasks_per_node" != "" ]]
1228	then
1229	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1230	fi
1231
1232	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1233	# SETZEN
1234	if [[ $node_usage = default ]]
1235	then
1236	if [[ $host = ibms ]]
1237	then
1238	node_usage=shared
1239	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1240	then
1241	node_usage=singlejob
1242	else
1243	node_usage=not_shared
1244	fi
1245	fi
1246
1247	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
1248	then
1249	printf "\n"
1250	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1251	printf "\n \"shared\" or \"not_shared\""
1252	locat=tasks_per_node; (( iec = 0 )); exit
1253	fi
1254
1255	fi
1256
1257	# PRUEFEN, OB HOSTFILE EXISTIERT
1258	if [[ -n $hostfile ]]
1259	then
1260	if [[ ! -f $hostfile ]]
1261	then
1262	printf "\n"
1263	printf "\n +++ hostfile \"$hostfile\" does not exist"
1264	locat=hostfile; exit
1265	fi
1266	fi
1267
1268	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1269	if [[ $host = ibmy && $do_remote = false ]]
1270	then
1271	if [[ ! -f $HOME/.rhosts ]]
1272	then
1273	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1274	printf "\n\n *** file:"
1275	printf "\n $HOME/.rhosts"
1276	printf "\n was created\n"
1277	fi
1278	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1279	then
1280	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1281	printf "\n\n *** file:"
1282	printf "\n $HOME/.rhosts"
1283	printf "\n was extended by the name of the current host\n"
1284	fi
1285	fi
1286
1287
1288	# Set default value for the maximum number of parallel io streams
1289	if [[ "$maximum_parallel_io_streams" = "" ]]
1290	then
1291	maximum_parallel_io_streams=$numprocs
1292	fi
1293
1294
1295	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1296	if [[ $queue = none ]]
1297	then
1298	case $host in
1299	(ibmh) queue=no_class;;
1300	(ibmkisti) queue=class.32plus;;
1301	(ibmy) queue=parallel;;
1302	(lckyoto) queue=ph;;
1303	(lcsgib) queue=testq;;
1304	(lcsgih) queue=testq;;
1305	(lctit) queue=S;;
1306	(nech) queue=none;;
1307	(necriam) queue=SP;;
1308	(unics) queue=unics;;
1309	esac
1310	fi
1311
1312
1313	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1314	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1315	# ERMITTELN
1316	(( i = 0 ))
1317	while (( i < iin ))
1318	do
1319	(( i = i + 1 ))
1320	(( maxcycle = 0 ))
1321
1322	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1323	if [[ "${actionin[$i]}" = di ]]
1324	then
1325	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1326	# REM-MASCHINE AUSWERTEN
1327	eval filename=${pathin[$i]}/${endin[$i]}
1328	else
1329	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1330	# REM-MASCHINE AUSWERTEN
1331	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1332	fi
1333
1334	# PRUEFEN AUF VORHANDENSEIN
1335	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1336	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1337	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1338	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1339	then
1340	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1341	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1342	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1343	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1344	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1345	if [[ "${transin[$i]}" != "locopt" ]]
1346	then
1347	printf "\n\n +++ INPUT-file: "
1348	if [[ "${extin[$i]}" = "" ]]
1349	then
1350	printf "\n $filename"
1351	else
1352	printf "\n $filename.${extin[$i]}"
1353	fi
1354	printf "\n does not exist\n"
1355	locat=input; exit
1356	else
1357	transin[$i]="unavailable"
1358	fi
1359	else
1360
1361	# ZYKLUSNUMMER FESTSTELLEN
1362	ls -1 -d $filename > filelist 2>/dev/null
1363	ls -1 -d $filename.* >> filelist 2>/dev/null
1364	while read zeile
1365	do
1366	cycle=$(print $zeile \| cut -f2 -d".")
1367	if [[ "$cycle" = "$zeile" ]]
1368	then
1369	(( icycle = 0 ))
1370	elif [[ "$cycle" = "${extin[$i]}" ]]
1371	then
1372	(( icycle = 0 ))
1373	else
1374	(( icycle = $cycle ))
1375	fi
1376	if (( icycle > maxcycle ))
1377	then
1378	(( maxcycle = icycle ))
1379	file_to_be_used=$zeile
1380	fi
1381	done <filelist
1382	rm filelist
1383
1384	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1385	if (( maxcycle > 0 ))
1386	then
1387	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1388	then
1389	filename=${filename}.$maxcycle.${extin[$i]}
1390	else
1391	filename=${filename}.$maxcycle
1392	fi
1393	else
1394	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1395	then
1396	filename=${filename}.${extin[$i]}
1397	fi
1398	fi
1399
1400	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1401	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1402	absnamein[$i]=$filename
1403	if (( maxcycle > 0 ))
1404	then
1405	if [[ "${actionin[$i]}" = di ]]
1406	then
1407	frelin[$i]=${endin[$i]}.$maxcycle
1408	else
1409	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1410	fi
1411	else
1412	if [[ "${actionin[$i]}" = di ]]
1413	then
1414	frelin[$i]=${endin[$i]}
1415	else
1416	frelin[$i]=${afname}${endin[$i]}
1417	fi
1418	fi
1419
1420	fi
1421	done
1422
1423
1424	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1425	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1426	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1427	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1428	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1429	(( i = 0 ))
1430	while (( i < iout ))
1431	do
1432	(( i = i + 1 ))
1433	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1434	then
1435	if [[ "${actionout[$i]}" = tr ]]
1436	then
1437	actionout[$i]=""
1438	elif [[ "${actionout[$i]}" = trpe ]]
1439	then
1440	actionout[$i]=pe
1441	elif [[ "${actionout[$i]}" = tra ]]
1442	then
1443	actionout[$i]=a
1444	fi
1445	(( maxcycle = 0 ))
1446	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1447	eval catalogname=${pathout[$i]}
1448	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1449	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1450	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1451	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1452	then
1453
1454	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1455	if cat /dev/null > $filename
1456	then
1457	rm $filename
1458	else
1459
1460	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1461	if [[ ! -d $catalogname ]]
1462	then
1463	if mkdir -p $catalogname
1464	then
1465	printf "\n\n *** directory:"
1466	printf "\n $catalogname"
1467	printf "\n was created\n"
1468	else
1469	printf "\n\n +++ OUTPUT-file:"
1470	printf "\n $filename"
1471	printf "\n cannot be created, because directory does not exist"
1472	printf "\n and cannot be created either"
1473	printf "\n"
1474	locat=output ; exit
1475	fi 2>/dev/null
1476	else
1477	printf "\n\n +++ OUTPUT-file:"
1478	printf "\n $filename"
1479	printf "\n cannot be created, although directory exists"
1480	printf "\n"
1481	locat=output ; exit
1482	fi
1483	fi 2>/dev/null
1484	else
1485
1486	# ZYKLUSNUMMER FESTSTELLEN
1487	ls -1 -d $filename > filelist 2>/dev/null
1488	ls -1 -d $filename.* >> filelist 2>/dev/null
1489	while read zeile
1490	do
1491	cycle=$(print $zeile \| cut -f2 -d".")
1492	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1493	then
1494	(( icycle = 1 ))
1495	else
1496	(( icycle = $cycle + 1 ))
1497	fi
1498	if (( icycle > maxcycle ))
1499	then
1500	(( maxcycle = icycle ))
1501	fi
1502	done <filelist
1503	rm filelist
1504	fi
1505
1506	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1507	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1508	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1509	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1510	if [[ "${actionout[$i]}" != a ]]
1511	then
1512	if (( maxcycle > 0 ))
1513	then
1514	filename=${filename}.$maxcycle
1515	if cat /dev/null > $filename
1516	then
1517	rm $filename
1518	else
1519	printf "\n +++ OUTPUT-file:"
1520	printf "\n $filename"
1521	printf "\n cannot be created"
1522	locat=output ; exit
1523	fi
1524	fi
1525	else
1526	(( maxcycle = maxcycle - 1 ))
1527	if (( maxcycle > 0 ))
1528	then
1529	filename=${filename}.$maxcycle
1530	fi
1531	fi
1532
1533	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1534	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1535	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1536	pathout[$i]=$filename
1537	if (( maxcycle > 0 ))
1538	then
1539	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1540	else
1541	frelout[$i]=${fname}${endout[$i]}
1542	fi
1543
1544	fi
1545	done
1546
1547
1548	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1549	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1550	then
1551	if [[ "$dvr_inc" = "" ]]
1552	then
1553	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1554	printf "\n This is required for the dvrp_graphics package.\n"
1555	locat=dvr; exit
1556	fi
1557	if [[ "$dvr_lib" = "" ]]
1558	then
1559	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1560	printf "\n This is required for the dvrp_graphics package.\n"
1561	locat=dvr; exit
1562	fi
1563	fi
1564
1565
1566	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1567	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1568	# UEBERSETZT ZU WERDEN)
1569	if [[ "$mainprog" = "" && "$executable" = "" ]]
1570	then
1571	printf "\n +++ neither main program nor executable defined"
1572	locat=source; exit
1573	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1574	then
1575	printf "\n +++ main program as well as executable defined"
1576	locat=source; exit
1577	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1578	then
1579	do_compile=false
1580	fi
1581
1582
1583	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1584	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1585	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1586	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1587	then
1588	rm -rf SOURCES_FOR_RUN_$fname
1589	mkdir SOURCES_FOR_RUN_$fname
1590	fi
1591
1592
1593	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1594	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1595	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1596	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1597	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1598	then
1599
1600	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1601	[[ "$source_list" = WP ]] && source_list=WRITE_PERMIT
1602
1603
1604	# EVTL. ZU UEBERSETZENDE PROGRAMMTEILE DADURCH BESTIMMEN, DASS GEPRUEFT
1605	# WIRD, WELCHE DATEIEN WRITE-PERMIT BESITZEN (DATEIEN SOLLTEN DESHALB
1606	# UNTER RCS-KONTROLLE STEHEN). MIT DER VARIABLEN EXCLUDE KOENNEN
1607	# BESTIMMTE DATEIEN GRUNDSAETZLICH VON DER UEBERSETZUNG AUSGESCHLOSSEN
1608	# WERDEN. DIES IST NUR BEI MANUELLEM START VON MRUN DURCH DEN BENUTZER
1609	# MOEGLICH, DA BEI AUTOMATISCHEN RESTARTS TEST DURCH DIE TATSAECHLICH
1610	# ZU UBERSETZENDEN DATEIEN ERSETZT IST.
1611	# ALLE ERMITTELTEN DATEIEN WERDEN IM VERZEICHNIS SOURCES_FOR_RUN_...
1612	# GESAMMELT
1613	if [[ "$source_list" = WRITE_PERMIT ]]
1614	then
1615
1616	source_list=""
1617	cd $source_path
1618
1619
1620	# ALLE MOEGLICHEN QUELLCODEDATEIEN AUFLISTEN
1621	Names=$(ls -1 *.f90 2>&1)
1622	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && Filenames="$Names"
1623	Names=$(ls -1 *.F90 2>&1)
1624	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && Filenames="$Filenames $Names"
1625	Names=$(ls -1 *.F 2>&1)
1626	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && Filenames="$Filenames $Names"
1627	Names=$(ls -1 *.f 2>&1)
1628	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && Filenames="$Filenames $Names"
1629	Names=$(ls -1 *.c 2>&1)
1630	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && Filenames="$Filenames $Names"
1631
1632
1633	# DATEIEN MIT WRITE-PERMIT NACH SOURCES_FOR_RUN_... KOPIEREN
1634	for dateiname in $Filenames
1635	do
1636	if [[ -w $dateiname ]]
1637	then
1638	if [[ "$exclude" = "" \|\| $(echo $exclude \| grep -c $dateiname) = 0 ]]
1639	then
1640	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1641	source_list=$source_list"$dateiname "
1642	fi
1643	fi
1644	done
1645
1646	cd - > /dev/null
1647
1648
1649	elif [[ "$source_list" = LOCALLY_MODIFIED ]]
1650	then
1651
1652	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1653	source_list=""
1654	cd $source_path
1655
1656
1657	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1658	if [[ ! -d .svn ]]
1659	then
1660	printf "\n\n +++ source directory"
1661	printf "\n \"$source_path\" "
1662	printf "\n is not under control of \"subversion\"."
1663	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1664	fi
1665
1666
1667	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1668	Filenames=""
1669	svn status > tmp_mrun
1670	while read line
1671	do
1672	firstc=`echo $line \| cut -c1`
1673	if [[ $firstc = M \|\| $firstc = "?" ]]
1674	then
1675	Name=`echo "$line" \| cut -c8-`
1676	extension=`echo $Name \| cut -d. -f2`
1677	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1678	then
1679	Filenames="$Filenames "$Name
1680	fi
1681	fi
1682	done < tmp_mrun
1683
1684
1685	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1686	for dateiname in $Filenames
1687	do
1688	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1689	source_list=$source_list"$dateiname "
1690	done
1691
1692	cd - > /dev/null
1693
1694
1695	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1696	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1697	# VORHANDEN
1698	elif [[ "$source_list" != "" && $restart_run != true ]]
1699	then
1700
1701	cd $source_path
1702
1703	for filename in $source_list
1704	do
1705
1706	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1707	if [[ $(print $filename \| grep -c "/") != 0 ]]
1708	then
1709	printf "\n +++ source code file: $filename"
1710	printf "\n must not contain (\"/\") "
1711	locat=source; exit
1712	fi
1713
1714	if [[ ! -f $filename ]]
1715	then
1716	printf "\n +++ source code file: $filename"
1717	printf "\n does not exist"
1718	locat=source; exit
1719	else
1720	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1721	fi
1722
1723	done
1724
1725	cd - > /dev/null
1726
1727	fi
1728
1729
1730	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1731	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1732	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1733	if [[ $restart_run != true ]]
1734	then
1735
1736	if [[ ! -f "$source_path/$mainprog" ]]
1737	then
1738	printf "\n\n +++ main program: $mainprog"
1739	printf "\n does not exist in source directory"
1740	printf "\n \"$source_path\"\n"
1741	locat=source; exit
1742	else
1743	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1744	then
1745	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1746	source_list=${mainprog}" $source_list"
1747	fi
1748	fi
1749	fi
1750
1751
1752	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1753	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1754	if [[ "$restart_run" != true ]]
1755	then
1756	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1757	if [[ ! -f $makefile ]]
1758	then
1759	printf "\n +++ file \"$makefile\" does not exist"
1760	locat=make; exit
1761	else
1762	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1763	fi
1764	fi
1765
1766
1767	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1768	if [[ $restart_run != true && "$add_source_path" != "" ]]
1769	then
1770
1771	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1772	if [[ ! -d $add_source_path ]]
1773	then
1774	printf "\n\n +++ WARNING: additional source code directory"
1775	printf "\n \"$add_source_path\" "
1776	printf "\n does not exist or is not a directory."
1777	printf "\n No source code will be used from this directory!\n"
1778	add_source_path=""
1779	sleep 3
1780	else
1781
1782	cd $add_source_path
1783	found=false
1784
1785	Names=$(ls -1 *.f90 2>&1)
1786	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1787	Names=$(ls -1 *.F90 2>&1)
1788	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1789	Names=$(ls -1 *.F 2>&1)
1790	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1791	Names=$(ls -1 *.f 2>&1)
1792	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1793	Names=$(ls -1 *.c 2>&1)
1794	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1795
1796	cd - > /dev/null
1797	cd SOURCES_FOR_RUN_$fname
1798
1799	# COPY MAKEFILE IF EXISTING
1800	if [[ -f $add_source_path/Makefile ]]
1801	then
1802	printf "\n\n *** user Makefile from directory"
1803	printf "\n \"$add_source_path\" is used \n"
1804	sleep 1
1805	cp $add_source_path/Makefile .
1806	fi
1807
1808	for dateiname in $AddFilenames
1809	do
1810	if [[ -f $dateiname ]]
1811	then
1812	printf "\n +++ source code file \"$dateiname\" found in additional"
1813	printf "\n source code directory \"$add_source_path\" "
1814	printf "\n but was also given with option \"-s\" which means that it should be taken"
1815	printf "\n from directory \"$source_path\"."
1816	locat=source; exit
1817	fi
1818
1819	cp $add_source_path/$dateiname .
1820	source_list="$source_list $dateiname"
1821
1822	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1823	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1824	then
1825	printf "\n\n +++ user file \"$dateiname\" "
1826	printf "\n is not listed in Makefile \n"
1827	locat=source; exit
1828	else
1829
1830	# Default User-Interface von der Liste entfernen, falls Datei
1831	# ein User-Interface enthaelt
1832	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1833	# then
1834	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1835	# then
1836	# rm -rf user_interface.f90
1837	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1838	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1839	# printf "\n since a user-interface is found in file"
1840	# printf "\n \"$add_source_path/$dateiname\" \n"
1841	# sleep 3
1842	# else
1843	if [[ $found = false ]]
1844	then
1845	found=true
1846	printf "\n\n *** following user file(s) added to the"
1847	printf " files to be translated:\n "
1848	fi
1849	printf "$dateiname "
1850	sleep 0.5
1851	fi
1852	done
1853	[[ $found = true ]] && printf "\n"
1854	cd - > /dev/null
1855	fi
1856	fi
1857
1858
1859	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1860	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1861	if [[ $restart_run != true && -n $package_list ]]
1862	then
1863
1864	cd $source_path
1865
1866	for package in $package_list
1867	do
1868
1869	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1870
1871	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1872	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1873	# LIEFERT
1874	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1875
1876
1877	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1878	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1879	for source_list_name in $package_source_list
1880	do
1881	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1882	then
1883
1884	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1885	ending=`echo $source_list_name \| cut -f2 -d.`
1886	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1887	then
1888	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1889	source_list="$source_list $source_list_name"
1890	fi
1891	fi
1892	done
1893	done
1894
1895	cd - > /dev/null
1896	fi
1897
1898
1899	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1900	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1901	# if [[ "$restart_run" != true ]]
1902	# then
1903	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1904	# if [[ ! -f $makefile ]]
1905	# then
1906	# printf "\n +++ file \"$makefile\" does not exist"
1907	# locat=make; exit
1908	# else
1909	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1910	# fi
1911	# fi
1912
1913	fi # do_compile=true
1914
1915
1916	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1917	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1918	if [[ $do_compile = true ]]
1919	then
1920
1921	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1922	# ZUSAMMENSETZEN
1923	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1924	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1925	then
1926	cpp_options="${cpp_options},-D__ibm=__ibm"
1927	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1928	then
1929	cpp_options="$cpp_options -D__nec"
1930	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1931	then
1932	cpp_options="$cpp_options -D__lc"
1933	else
1934	cpp_options="$cpp_options -D__$localhost"
1935	fi
1936
1937	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1938	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1939	then
1940	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1941	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1942	else
1943	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1944	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1945	fi
1946
1947	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1948	if [[ -n $package_list ]]
1949	then
1950	for package in $package_list
1951	do
1952	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1953	then
1954	if [[ $package != "dvrp_graphics+1PE" ]]
1955	then
1956	cpp_options="${cpp_options},-D__$package=__$package"
1957	else
1958	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1959	export use_seperate_pe_for_dvrp_output=true
1960	fi
1961	else
1962	if [[ $package != "dvrp_graphics+1PE" ]]
1963	then
1964	cpp_options="$cpp_options -D__$package"
1965	else
1966	cpp_options="$cpp_options -D__dvrp_graphics"
1967	export use_seperate_pe_for_dvrp_output=true
1968	fi
1969	fi
1970	done
1971	fi
1972
1973	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1974	if [[ -n $cpp_opts ]]
1975	then
1976	for popts in $cpp_opts
1977	do
1978	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1979	then
1980	cpp_options="${cpp_options},-D__$popts=__$popts"
1981	else
1982	cpp_options="$cpp_options -D__$popts"
1983	fi
1984	done
1985	fi
1986
1987	else
1988
1989
1990	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1991	if [[ $do_remote = false ]]
1992	then
1993	if [[ ! -f $executable ]]
1994	then
1995	printf "\n +++ executable file: $executable"
1996	printf "\n does not exist"
1997	locat=executable; exit
1998	fi
1999	fi
2000	fi
2001
2002
2003	# JOBMODUS FESTSTELLEN
2004	if [[ "$ENVIRONMENT" = BATCH ]]
2005	then
2006	jobmo=BATCH
2007	else
2008	jobmo=INTERACTIVE
2009	fi
2010
2011
2012	# no interactive runs on lctit
2013	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
2014	then
2015	printf "\n +++ no interactive runs allowed on host \"$host\" "
2016	printf "\n please submit batch job using mrun option \"-b\" \n"
2017	locat=normal; exit
2018	fi
2019
2020
2021	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
2022	# DURCH BENUTZER ANDERWEITIG VEREINBART
2023	if [[ "$compiler_name" = "" ]]
2024	then
2025
2026	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
2027	locat=compiler_name; exit
2028
2029	fi
2030
2031
2032	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
2033	[[ $localhost = necriam ]] && compiler_name=mpif90
2034
2035
2036
2037	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
2038	kennung=$RANDOM
2039	if [[ "$tmp_user_catalog" = "" ]]
2040	then
2041	if [[ $localhost = ibmh ]]
2042	then
2043	tmp_user_catalog=$SCRATCH
2044	elif [[ $localhost = nech ]]
2045	then
2046	tmp_user_catalog=$WRKSHR
2047	else
2048	tmp_user_catalog=/tmp
2049	fi
2050	fi
2051	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
2052
2053
2054	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
2055	# BESTIMMEN
2056	if [[ "$tmp_data_catalog" = "" ]]
2057	then
2058	if [[ $localhost = nech ]]
2059	then
2060	tmp_data_catalog=$WRKSHR/mrun_restart_data
2061	else
2062	tmp_data_catalog=/tmp/mrun_restart_data
2063	fi
2064	fi
2065
2066
2067	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
2068	# ERSETZEN
2069	if [[ $do_remote = false && $do_compile = true ]]
2070	then
2071	eval fopts=\"$fopts\"
2072	eval lopts=\"$lopts\"
2073	fi
2074
2075
2076
2077	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
2078	fopts="$fopts $netcdf_inc $dvr_inc"
2079	lopts="$lopts $netcdf_lib $dvr_lib"
2080	ROPTS="$ropts"
2081	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxt4 \|\| $host = lcxt5m \|\| $host = lck \|\| $host = lckordi) && -n $numprocs ]]
2082	then
2083	XOPT="-X $numprocs"
2084	fi
2085
2086
2087
2088	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
2089	# GRAMM BENOETIGT
2090	done=false
2091	while [[ $done = false ]]
2092	do
2093	cputime=$cpumax
2094	if (( $cputime == 0 ))
2095	then
2096	if [[ $do_batch = true ]]
2097	then
2098	printf "\n +++ cpu-time is undefined"
2099	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
2100	printf "\n >>> "
2101	read cputime 1>/dev/null 2>&1
2102	else
2103	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
2104	fi
2105	else
2106	done=true
2107	fi
2108	cpumax=$cputime
2109	done
2110
2111	(( minuten = cputime / 60 ))
2112	(( sekunden = cputime - minuten * 60 ))
2113
2114
2115	# PRUEFEN DER KERNSPEICHERANFORDERUNG
2116	if [[ $do_batch = true ]]
2117	then
2118	done=false
2119	while [[ $done = false ]]
2120	do
2121	if (( memory == 0 ))
2122	then
2123	printf "\n +++ memory demand is undefined"
2124	printf "\n >>> Please type memory in MByte per process as INTEGER:"
2125	printf "\n >>> "
2126	read memory 1>/dev/null 2>&1
2127	else
2128	done=true
2129	fi
2130	done
2131	fi
2132
2133
2134	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
2135	if [[ $do_remote = true && -z $remote_username ]]
2136	then
2137	while [[ -z $remote_username ]]
2138	do
2139	printf "\n +++ username on remote host \"$host\" is undefined"
2140	printf "\n >>> Please type username:"
2141	printf "\n >>> "
2142	read remote_username
2143	done
2144	mc="$mc -u$remote_username"
2145	fi
2146
2147
2148	# set module load command and export for subjob
2149	if [[ "$modules" != "" ]]
2150	then
2151	if [[ $host = lctit ]]
2152	then
2153	export module_calls=". $modules"
2154	else
2155	export module_calls="module load ${modules};"
2156	fi
2157	fi
2158
2159	# bugfix for wrong netcdf module and for netCDF4 usage in case of mpt
2160	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2161	then
2162	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
2163	then
2164	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
2165	fi
2166	# if [[ $(echo $module_calls \| grep -c mpt) != 0 ]]
2167	# then
2168	# export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/sgi/mpt/2011-02-07/lib:\$LD_LIBRARY_PATH;"
2169	# echo "*** module_calls = $module_calls"
2170	# fi
2171	fi
2172
2173
2174	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
2175	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2176	then
2177	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
2178	then
2179	mpilib=mpt
2180	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
2181	then
2182	mpilib=mvapich
2183	elif [[ $(echo $modules \| grep -c impi ) != 0 ]]
2184	then
2185	mpilib=impi
2186	fi
2187	fi
2188
2189
2190
2191	###########################################################################
2192	# HEADER-AUSGABE
2193	###########################################################################
2194
2195
2196	calltime=$(date)
2197	printf "\n"
2198	# [[ $silent = false ]] && clear
2199	printf "#--------------------------------------------------------------# \n"
2200	printf "\| $version$calltime \| \n"
2201	printf "\| \| \n"
2202	spalte1="called on:"; spalte2=$localhost_realname
2203	printf "\| $spalte1$spalte2 \| \n"
2204	if [[ $local_compile = false ]]
2205	then
2206	if [[ $do_remote = true ]]
2207	then
2208	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2209	else
2210	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2211	fi
2212	else
2213	spalte1="compiling test only!"; spalte2=""
2214	fi
2215	printf "\| $spalte1$spalte2 \| \n"
2216	if [[ -n $numprocs ]]
2217	then
2218	spalte1="number of PEs:"; spalte2=$numprocs
2219	printf "\| $spalte1$spalte2 \| \n"
2220	fi
2221	if [[ -n $tasks_per_node ]]
2222	then
2223	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2224	printf "\| $spalte1$spalte2 \| \n"
2225	fi
2226	if [[ $maximum_parallel_io_streams != $numprocs ]]
2227	then
2228	spalte1="max par io streams:"; spalte2="$maximum_parallel_io_streams"
2229	printf "\| $spalte1$spalte2 \| \n"
2230	fi
2231	if [[ $use_openmp = true ]]
2232	then
2233	spalte1="threads per task:"; spalte2="$threads_per_task"
2234	printf "\| $spalte1$spalte2 \| \n"
2235	fi
2236	printf "\| \| \n"
2237	if [[ $do_compile = true ]]
2238	then
2239	if [[ "$mopts" != "" ]]
2240	then
2241	spalte1="make options:"; spalte2=$mopts
2242	printf "\| $spalte1$spalte2 \| \n"
2243	zeile=$(echo "$mopts" \| cut -c41-)
2244	while [[ "$zeile" != "" ]]
2245	do
2246	spalte1=""
2247	spalte2=$zeile
2248	printf "\| $spalte1$spalte2 \| \n"
2249	zeile=$(echo "$zeile" \| cut -c41-)
2250	done
2251	fi
2252
2253	spalte1="cpp directives:"; spalte2=$cpp_options
2254	printf "\| $spalte1$spalte2 \| \n"
2255	zeile=$(echo "$cpp_options" \| cut -c41-)
2256	while [[ "$zeile" != "" ]]
2257	do
2258	spalte1=""
2259	spalte2=$zeile
2260	printf "\| $spalte1$spalte2 \| \n"
2261	zeile=$(echo "$zeile" \| cut -c41-)
2262	done
2263
2264	spalte1="compiler options:"; spalte2="$fopts"
2265	printf "\| $spalte1$spalte2 \| \n"
2266	zeile=$(echo "$fopts" \| cut -c41-)
2267	while [[ "$zeile" != "" ]]
2268	do
2269	spalte1=""
2270	spalte2=$zeile
2271	printf "\| $spalte1$spalte2 \| \n"
2272	zeile=$(echo "$zeile" \| cut -c41-)
2273	done
2274
2275	spalte1="linker options:"; spalte2=$lopts
2276	printf "\| $spalte1$spalte2 \| \n"
2277	zeile=$(echo "$lopts" \| cut -c41-)
2278	while [[ "$zeile" != "" ]]
2279	do
2280	spalte1=""
2281	spalte2=$zeile
2282	printf "\| $spalte1$spalte2 \| \n"
2283	zeile=$(echo "$zeile" \| cut -c41-)
2284	done
2285
2286	spalte1="modules to be load:"; spalte2=$modules
2287	printf "\| $spalte1$spalte2 \| \n"
2288	zeile=$(echo "$modules" \| cut -c41-)
2289	while [[ "$zeile" != "" ]]
2290	do
2291	spalte1=""
2292	spalte2=$zeile
2293	printf "\| $spalte1$spalte2 \| \n"
2294	zeile=$(echo "$zeile" \| cut -c41-)
2295	done
2296
2297	spalte1="main program":; spalte2=$mainprog
2298	printf "\| $spalte1$spalte2 \| \n"
2299	else
2300	spalte1=executable:; spalte2=$executable
2301	printf "\| $spalte1$spalte2 \| \n"
2302	fi
2303	printf "\| \| \n"
2304	spalte1="base name of files":; spalte2=$fname
2305	printf "\| $spalte1$spalte2 \| \n"
2306	if [[ $fname != $afname ]]
2307	then
2308	spalte1="base name of input files":; spalte2=$afname
2309	printf "\| $spalte1$spalte2 \| \n"
2310	fi
2311	spalte1="INPUT control list":; spalte2=$input_list
2312	printf "\| $spalte1$spalte2 \| \n"
2313	spalte1="OUTPUT control list":; spalte2=$output_list
2314	printf "\| $spalte1$spalte2 \| \n"
2315
2316	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2317	then
2318	spalte1="memory demand / PE":; spalte2="$memory MB"
2319	printf "\| $spalte1$spalte2 \| \n"
2320	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2321	printf "\| $spalte1$spalte2 \| \n"
2322	fi
2323
2324	if [[ $do_compile = true ]]
2325	then
2326	printf "\| \| \n"
2327	printf "\| Files to be compiled: \| \n"
2328	zeile=$source_list
2329	while [[ "$zeile" != "" ]]
2330	do
2331	spalte3=$zeile
2332	printf "\| $spalte3 \| \n"
2333	zeile=$(echo "$zeile" \| cut -c61-)
2334	done
2335	fi
2336	printf "#--------------------------------------------------------------#"
2337
2338
2339
2340	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2341	if [[ $do_trace = true ]]
2342	then
2343	(( i = 0 ))
2344	while (( i < iin ))
2345	do
2346	(( i = i + 1 ))
2347	if (( i == 1 ))
2348	then
2349	printf "\n\n >>> INPUT-file assignments:\n"
2350	fi
2351	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2352	done
2353	(( i = 0 ))
2354	while (( i < iout ))
2355	do
2356	(( i = i + 1 ))
2357	if (( i == 1 ))
2358	then
2359	printf "\n\n >>> OUTPUT-file assignments:\n"
2360	fi
2361	printf "\n ${localout[$i]} : ${pathout[$i]}"
2362	done
2363	(( i = 0 ))
2364	while (( i < iic ))
2365	do
2366	(( i = i + 1 ))
2367	if (( i == 1 ))
2368	then
2369	printf "\n\n >>> INPUT-commands:\n"
2370	fi
2371	printf "\n ${in_command[$i]}"
2372	done
2373	(( i = 0 ))
2374	while (( i < ioc ))
2375	do
2376	(( i = i + 1 ))
2377	if (( i == 1 ))
2378	then
2379	printf "\n\n >>> OUTPUT-commands:\n"
2380	fi
2381	printf "\n ${out_command[$i]}"
2382	done
2383	fi
2384
2385
2386	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2387	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2388	then
2389	antwort=dummy
2390	printf "\n\n"
2391	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2392	do
2393	printf " >>> everything o.k. (y/n) ? "
2394	read antwort
2395	done
2396	if [[ $antwort = n \|\| $antwort = N ]]
2397	then
2398	locat=user_abort; (( iec = 0 )); exit
2399	fi
2400	if [[ $do_batch = true ]]
2401	then
2402	printf " >>> batch-job will be created and submitted"
2403	else
2404	if [[ $local_compile = false ]]
2405	then
2406	printf " >>> MRUN will now continue to execute on this machine"
2407	else
2408	printf " >>> a test compilation will now be carried out on this machine"
2409	fi
2410	fi
2411	fi
2412
2413	#### PERFORM PARAMETER FILE CHECK (COUPLED RUNS ARE NOT SUPPORTED YET)
2414	skip_check=false
2415	if [[ $check_namelist_files == false \|\| $fromhost != $localhost \|\| $run_coupled_model == true \|\| $restart_run == true ]]
2416	then
2417	skip_check=true
2418	fi
2419	if [[ $skip_check == false ]]
2420	then
2421	if [[ $ocean_file_appendix == true ]]
2422	then
2423	d3par_string="d3o#"
2424	d3fpar_string="d3of"
2425	else
2426	d3par_string="d3#"
2427	d3fpar_string="d3f"
2428	fi
2429
2430	tmp_check=${working_directory}/tmp_check
2431
2432	# GET PARAMETER FILE SUFFIX (USUALLY "_P3D")
2433	line=""
2434	found=false
2435	grep "$d3par_string" $config_file \| grep "PARIN" > $tmp_check
2436	while read line1
2437	do
2438	line="$line1"
2439	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2440	then
2441	# EVENTUELLE DOPPELPUNKTE AUS OPTIONSSTRING ENTFERNEN
2442	p3d_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2443	found=true
2444	fi
2445	done < $tmp_check
2446
2447	if [[ $found = false ]]
2448	then
2449	printf "\n +++ no PARIN list entry found for $d3par_string in the configuration file."
2450
2451	locat=check_namelist; exit
2452	fi
2453
2454	# GET RESTART PARAMETER FILE SUFFIX (USUALLY "_P3DF"). THIS FILE MIGHT IS
2455	# NOT NECESSARILY REQUIRED
2456	line=""
2457	found=false
2458	grep "d3f" $config_file \| grep "PARIN" > $tmp_check
2459	while read line1
2460	do
2461	line="$line1"
2462	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2463	then
2464	p3df_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2465	found=true
2466	fi
2467	done < $tmp_check
2468
2469	if [[ $found = false ]]
2470	then
2471	printf "\n +++ no PARIN list entry found for d3f in the configuration file."
2472	fi
2473	# GET TOPOGRAPHY PARAMETER FILE SUFFIX (USUALLY "_P3DF"). THIS FILE MIGHT IS
2474	# NOT NECESSARILY REQUIRED
2475	line=""
2476	found=false
2477	grep "d3f" $config_file \| grep "TOPOGRAPHY_DATA" > $tmp_check
2478	while read line1
2479	do
2480	line="$line1"
2481	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2482	then
2483	topo_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2484	found=true
2485	fi
2486	done < $tmp_check
2487
2488	if [[ $found = false ]]
2489	then
2490	printf "\n +++ no TOPOGRAPHY list entry found in the configuration file."
2491	fi
2492
2493	rm -rf ${working_directory}/tmp_check
2494
2495	# DEFINE VARIABLES FOR FREQUENTLY USED DIRECTORIES
2496	check_depository="${working_directory}/trunk/UTIL"
2497	check_sources="${working_directory}/tmp_check_namelist_files"
2498
2499	# CHECK IF THE A P3DF FILE MUST BE CHECKED
2500	for item in $input_list
2501	do
2502	if [[ "$item" == "restart" \|\| "$item" == d3f \|\| "$item" == d3of ]]
2503	then
2504	check_restart=1
2505	else
2506	check_restart=0
2507	fi
2508	done
2509
2510	# ERROR IF NO PARAMETER FILE WAS FOUND, OTHERWISE PROCEED
2511	if [[ ! -f $working_directory/JOBS/$fname/INPUT/${fname}${p3d_suffix} ]]
2512	then
2513	printf "\n\n +++ ERROR: parameter file (${fname}${p3d_suffix}) not found."
2514	locat=check_namelist; exit
2515	fi
2516
2517	# CHECK IF THE RESTART PARAMETER FILE EXISTS (IF NECESSARY)
2518	if [[ $check_restart == 1 ]]
2519	then
2520	if [[ ! -f $working_directory/JOBS/$fname/INPUT/${fname}${p3df_suffix} ]]
2521	then
2522	printf "\n\n +++ WARNING: restart parameter file (${fname}${p3df_suffix}) is missing."
2523	check_restart=0
2524	answer=dummy
2525	printf "\n\n"
2526
2527	if [[ $silent == false ]]
2528	then
2529	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2530	do
2531	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2532	read answer
2533	done
2534	if [[ $answer = a \|\| $answer = A ]]
2535	then
2536	printf "\n +++ Aborting...."
2537	locat=normal; exit
2538	fi
2539	fi
2540	else
2541	check_restart=1
2542	fi
2543	fi
2544
2545	# CREATE TEMPORARY SOURCES_FOR_CHECK PATH
2546	mkdir $check_sources
2547	cd $check_sources
2548
2549	# CHECK FOR USER CODE, OTHERWISE USE THE PRECOMPILED CHECK_NAMELIST_FILES.X
2550	if [[ -d $working_directory/USER_CODE/$fname ]]
2551	then
2552	printf "\n\n *** copying files from $check_depository"
2553	cp $check_depository/check_namelist_files.tar ./
2554
2555	printf "\n\n *** untar of makefile and source files in $check_sources"
2556	tar -xf check_namelist_files.tar > /dev/null 2>&1
2557
2558	printf "\n\n *** adding user code."
2559	cp $working_directory/USER_CODE/$fname/* ./
2560	touch check_namelist_files.f90
2561
2562	# GET COMPILER OPTIONS AND PERFORM MAKE
2563	printf "\n\n *** compiling code if necessary...\n"
2564	copts_check="-cpp -D_parallel -D__check"
2565	make -f Makefile_check F90=$compiler_name_ser COPT="$copts_check"
2566
2567	# GET MAKE OUTPUT
2568	if [[ $? != 0 ]]
2569	then
2570	printf "\n +++ error during make."
2571	answer=dummy
2572	printf "\n\n"
2573	if [[ $silent == false ]]
2574	then
2575	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2576	do
2577	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2578	read answer
2579	done
2580	if [[ $answer = a \|\| $answer = A ]]
2581	then
2582	printf "\n +++ Aborting..."
2583	rm -rf $check_sources
2584	locat=normal; exit
2585	else
2586	skip_check=true
2587	fi
2588	else
2589	skip_check=true
2590	fi
2591	fi
2592	else
2593	cp $PALM_BIN/check_namelist_files.x ./
2594	fi
2595
2596	cp $working_directory/JOBS/$fname/INPUT/${fname}${p3d_suffix} ./PARIN
2597	if [[ $check_restart == 1 ]]
2598	then
2599	cp $working_directory/JOBS/$fname/INPUT/${fname}${p3df_suffix} ./PARINF
2600	fi
2601
2602
2603	if [[ -f $working_directory/JOBS/$fname/INPUT/${fname}${topo_suffix} && $skip_check == false ]]
2604	then
2605	printf "\n *** adding topography data"
2606	cp $working_directory/JOBS/$fname/INPUT/${fname}${topo_suffix} ./TOPOGRAPHY_DATA
2607
2608	# IN CASE OF TOPOGRAPHY AND HIGH GRID POINT NUMBERS, THE STACK SIZE
2609	# MUST BE INCREASED. THIS IS DUE TO THE ARRAY nzb_local AND topo_height,
2610	# WHICH REQUIRE SUFFICIENT MEMORY
2611	ulimit -s unlimited
2612	fi
2613
2614	# CREATE ENVPAR FILE, WHICH IS NEEDED BY CHECK_NAMELIST_FILES.X
2615	cat > ENVPAR << %%END%%
2616	&envpar run_identifier = '$fname', host = '$host',
2617	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2618	maximum_parallel_io_streams = $maximum_parallel_io_streams,
2619	maximum_cpu_time_allowed = ${cpumax}.,
2620	revision = '$global_revision',
2621	local_dvrserver_running = $local_dvrserver_running /
2622
2623	%%END%%
2624
2625	# SAFETY CHECK: ONLY PROCEED IF THE PARAMETER CHECK PROGRAM WAS PROPERLY COMPILED
2626	if [[ ! -f check_namelist_files.x && $skip_check == false ]] then
2627	printf "\n +++ WARNING: check_namelist_files.x not found."
2628	answer=dummy
2629	printf "\n\n"
2630
2631	if [[ $silent == false ]]
2632	then
2633	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2634	do
2635	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2636	read answer
2637	done
2638	if [[ $answer = a \|\| $answer = A ]]
2639	then
2640	printf "\n +++ Aborting..."
2641	rm -rf $check_sources
2642	locat=normal; exit
2643	else
2644	printf "\n *** Skipping parameter file check."
2645
2646	fi
2647	fi
2648
2649	elif [[ $skip_check == false ]]
2650	then
2651	# STARTING THE PARAMETER FILE CHECK
2652	printf "\n\n *** starting parameter file check..."
2653
2654	# CHECKING THE P3D FILE
2655	printf "\n\n (1) checking $fname$p3d_suffix"
2656	echo "$numprocs 0" > VARIN
2657	errors=`./check_namelist_files.x < VARIN 2>&1`
2658
2659	check_error=false
2660	if [[ "$errors" == "" ]]
2661	then
2662	printf " --> o.k."
2663	else
2664	printf " --> failed."
2665	check_error=true
2666	printf "\n\n $errors"
2667	fi
2668
2669	# CHECKING THE PD3F FILE IF NECESSARY
2670	if [[ $check_restart == 1 && $check_error == false ]]
2671	then
2672	printf "\n\n (2) checking $fname$p3df_suffix"
2673
2674	# FIRST CHECK IF INITIALIZING_ACTIONS="READ_RESTART_DATA" IS SET IN &INIPAR LIST
2675	found=false
2676	cat PARINF\|while read line
2677	do
2678	line=$(echo $line\|sed 's/ //g')
2679	if [[ $line == "&inipar" ]]
2680	then
2681	start_search=true
2682	fi
2683
2684	if [[ $start_search == true ]]
2685	then
2686	if [[ $line == "initializing_actions='read_restart_data'" ]]
2687	then
2688	found=true
2689	break
2690	fi
2691	fi
2692
2693	if [[ $line == "/" ]]
2694	then
2695	start_search=false
2696	fi
2697
2698	done
2699
2700	if [[ $found = false ]]
2701	then
2702	printf "\n\n +++ ERROR: initializing_actions = 'read_restart_data' not found"
2703	printf "\n in &inipar list in $fname$p3df_suffix."
2704	rm -rf $check_sources
2705	locat=check_namelist; exit
2706	fi
2707
2708	echo "$numprocs 1" > VARIN
2709	errors=`./check_namelist_files.x < VARIN 2>&1`
2710
2711	if [[ "$errors" == "" ]]
2712	then
2713	printf " --> o.k."
2714	else
2715	printf " --> failed."
2716	check_error=true
2717	printf "\n\n $errors"
2718	fi
2719	fi
2720
2721	# REPORT ERRORS AND CONTINUE/EXIT
2722	if [[ $check_error == true ]]
2723	then
2724	printf "\n +++ errors found in the parameter file!\n"
2725	answer=dummy
2726	printf "\n\n"
2727
2728	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2729	do
2730	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2731	read answer
2732	done
2733
2734	if [[ $answer = a \|\| $answer = A ]]
2735	then
2736	printf "\n +++ Aborting..."
2737	rm -rf $check_sources
2738	locat=normal; exit
2739	fi
2740	else
2741	printf "\n\n *** parameter file(s) seem(s) to be o.k.\n"
2742	fi
2743	rm -rf $check_sources
2744	fi
2745	else
2746	printf "\n\n +++ skipping parameter file check\n"
2747	fi
2748
2749	# DELETE TEMPORARY DIRECTORY AND FINISH NAMELIST FILE CHECK
2750	rm -rf $check_sources
2751	cd $working_directory
2752
2753	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2754	# CHENDE AKTIONEN DURCHGEFUEHRT
2755	if [[ $do_batch = false ]]
2756	then
2757
2758
2759	# TEMPORAEREN KATALOG ERZEUGEN
2760	mkdir -p $TEMPDIR
2761	chmod go+rx $TEMPDIR
2762	tmpcreate=true
2763
2764	# set striping on lustre file system
2765	# if [[ $localhost = lcsgih ]]
2766	# then
2767	# lfs setstripe -s 8192k -c 16 $TEMPDIR
2768	# lfs getstripe $TEMPDIR
2769	# fi
2770
2771
2772	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2773	# TEMPORAERES VERZEICHNIS KOPIEREN
2774	if [[ $do_compile = true ]]
2775	then
2776
2777	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2778	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2779	if [[ $localhost = nech ]]
2780	then
2781	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2782	if mkdir -p $TEMPDIR_COMPILE
2783	then
2784	printf "\n *** \"$TEMPDIR_COMPILE\" "
2785	printf "\n is generated as temporary directory for cross compiling\n"
2786	else
2787	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2788	printf "\n needed for cross compilation failed"
2789	locat=compile
2790	exit
2791	fi
2792	else
2793	TEMPDIR_COMPILE=$TEMPDIR
2794	fi
2795
2796
2797	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2798	line=""
2799	grep "%depository_path" $config_file > tmp_mrun
2800	while read line
2801	do
2802	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2803	then
2804	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2805	then
2806	global_depository_path=`echo $line \| cut -d" " -s -f2`
2807	fi
2808	fi
2809	done < tmp_mrun
2810
2811	line=""
2812	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2813	while read line
2814	do
2815	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2816	then
2817	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2818	then
2819	local_depository_path=`echo $line \| cut -d" " -s -f2`
2820	fi
2821	fi
2822	done < tmp_mrun
2823
2824	if [[ "$local_depository_path" = "" ]]
2825	then
2826	if [[ "$global_depository_path" != "" ]]
2827	then
2828	local_depository_path=$global_depository_path
2829	else
2830	printf "\n\n +++ no depository path found in configuration file"
2831	printf "\n for local host \"$localhost\" "
2832	printf "\n please set \"\%depository_path\" in configuration file\n"
2833	locat=config_file; exit
2834	fi
2835	fi
2836	eval local_depository_path=$local_depository_path
2837	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2838	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2839
2840
2841	basename=`print $mainprog \| cut -f1 -d"."`
2842	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2843	if [[ ! -f $make_depository ]]
2844	then
2845	printf "\n"
2846	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2847	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2848	else
2849	cp $make_depository $TEMPDIR_COMPILE
2850	cd $TEMPDIR_COMPILE
2851	tar -xf $make_depository > /dev/null 2>&1
2852	cd - > /dev/null
2853	fi
2854
2855	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2856
2857	else
2858
2859	cp $executable ${TEMPDIR}/a.out
2860
2861	fi
2862
2863
2864	# WECHSEL IN TEMPORAEREN KATALOG
2865	cd $TEMPDIR
2866	printf "\n *** changed to temporary directory: $TEMPDIR"
2867
2868
2869	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2870	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2871	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2872	# ERMITTELN
2873	(( i = 0 ))
2874	while (( i < iout ))
2875	do
2876	(( i = i + 1 ))
2877	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2878	then
2879	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2880	else
2881	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2882	fi
2883	done
2884
2885
2886	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2887	if [[ $do_compile = true ]]
2888	then
2889
2890
2891	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2892	printf "\n\n\n *** compilation starts \n$striche\n"
2893	printf " *** compilation with make using following options:\n"
2894	printf " make depository: $make_depository"
2895	if [[ "$mopts" != "" ]]
2896	then
2897	printf " make options: $mopts\n"
2898	fi
2899	printf " compilername: $compiler_name\n"
2900	printf " compiler options: $fopts\n"
2901	printf " preprocessor directives: $cpp_options \n"
2902	printf " linker options: $lopts \n"
2903	if [[ "$modules" != "" ]]
2904	then
2905	printf " modules to be load: $modules \n"
2906	fi
2907	printf " source code files: $source_list \n"
2908
2909	if [[ $localhost = nech ]]
2910	then
2911	ssh 136.172.44.192 -l $usern ". /SX/opt/etc/initsx.sh; $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2912	cp $TEMPDIR_COMPILE/a.out .
2913	[[ $? != 0 ]] && compile_error=true
2914	rm -rf $TEMPDIR_COMPILE
2915	elif [[ $localhost = ibmh ]]
2916	then
2917	printf " compiler is called via ssh on \"plogin1\" \n"
2918	ssh plogin1 -l $usern "export PATH=/sw/ibm/xlf/12.1.0.3/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2919	[[ ! -f a.out ]] && compile_error=true
2920	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2921	elif [[ $localhost = lcsgib ]]
2922	then
2923	printf " compiler is called via ssh on \"bicegate0\" \n"
2924	ssh bicegate0 -l $usern ". /usr/share/modules/init/bash; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2925	[[ ! -f a.out ]] && compile_error=true
2926	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2927	elif [[ $localhost = lcsgih ]]
2928	then
2929	printf " compiler is called via ssh on \"hicegate0\" \n"
2930	ssh hicegate0 -l $usern ". /usr/share/modules/init/bash; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2931	[[ ! -f a.out ]] && compile_error=true
2932	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2933	elif [[ $localhost = lcflow ]]
2934	then
2935	printf " compiler is called via ssh on \"flow\" \n"
2936	ssh flow02.hpc.uni-oldenburg.de -l $usern ". /cm/local/apps/environment-modules/3.2.6/Modules/3.2.6/init/bash; echo $MODULEPATH; echo $MODULESHOME; MODULEPATH=/cm/shared/modulefiles/; module load netcdf/intel/64/4.1.3 intel/ics/64/2011.0.013 intel/impi/64/4.0.1.007 hdf5/intel/64/1.8.7; cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2937	[[ ! -f a.out ]] && compile_error=true
2938	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2939	else
2940	[[ $localhost = lcxt4 ]] && . /opt/modules/default/init/ksh
2941	[[ "$module_calls" != "" ]] && eval $module_calls
2942	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2943
2944	fi
2945
2946	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2947	then
2948	printf "\n +++ error occured while compiling or linking"
2949	locat=compile
2950
2951	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
2952	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
2953	# then
2954	exit
2955	# else
2956	# locat=normal
2957	# fi
2958	else
2959	printf "$striche\n *** compilation finished \n"
2960	fi
2961	fi
2962
2963
2964	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2965	if [[ $local_compile = true ]]
2966	then
2967	cd $HOME
2968	rm -rf $TEMPDIR
2969	locat=local_compile; exit
2970	fi
2971
2972
2973	# BEREITSTELLEN DER INPUT-DATEIEN
2974	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2975	(( i = 0 ))
2976	while (( i < iin ))
2977	do
2978	(( i = i + 1 ))
2979	if (( i == 1 ))
2980	then
2981	printf "\n\n *** providing INPUT-files:\n$striche"
2982	fi
2983
2984
2985	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2986	if [[ "${transin[$i]}" = unavailable ]]
2987	then
2988	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2989	then
2990	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2991	printf "\n is not available!"
2992	else
2993	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2994	printf "\n is not available!"
2995	fi
2996	continue
2997	fi
2998
2999	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3000	files_for_pes=false; datentyp=file
3001	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
3002	then
3003	files_for_pes=true; datentyp=directory
3004	actionin[$i]=""
3005	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
3006	then
3007	actionin[$i]=""
3008	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
3009	then
3010	files_for_pes=true; datentyp=directory
3011	actionin[$i]="ar"
3012	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
3013	then
3014	actionin[$i]="ar"
3015	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
3016	then
3017	files_for_pes=true; datentyp=directory
3018	actionin[$i]="fl"
3019	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
3020	then
3021	actionin[$i]="fl"
3022	fi
3023
3024	if [[ $files_for_pes = true ]]
3025	then
3026	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
3027	else
3028	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
3029	fi
3030
3031	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
3032	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
3033	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
3034	# SERVER ZU HOLEN
3035	if [[ "${actionin[$i]}" = fl ]]
3036	then
3037	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
3038	if [[ $files_for_pes = false ]]
3039	then
3040	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
3041	then
3042	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
3043	got_tmp[$i]=true
3044	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
3045	then
3046	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
3047	printf "\n *** trying to use backup copy in \"$WORK\" "
3048	cp $WORK/${frelin[$i]} ${localin[$i]}
3049	else
3050	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
3051	printf "\n or \"$tmp_data_catalog\" does not exist!"
3052	printf "\n *** trying to get copy from archive"
3053	actionin[$i]=ar
3054	fi
3055	else
3056	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
3057	then
3058	mkdir ${localin[$i]}
3059	cd $tmp_data_catalog/${frelin[$i]}
3060	for file in $(ls *)
3061	do
3062	ln $file $TEMPDIR/${localin[$i]}
3063	done
3064	cd $TEMPDIR
3065	got_tmp[$i]=true
3066	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
3067	then
3068	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
3069	printf "\n *** trying to use backup copy in \"$WORK\" "
3070	cp -r $WORK/${frelin[$i]} ${localin[$i]}
3071	else
3072	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
3073	printf "\n or \"$tmp_data_catalog\" does not exist!"
3074	printf "\n *** trying to get copy from archive"
3075	actionin[$i]=ar
3076	fi
3077	fi
3078	fi
3079
3080
3081	# DATEI LIEGT AUF ARCHIV-SERVER
3082	if [[ "${actionin[$i]}" = ar ]]
3083	then
3084
3085	if [[ $files_for_pes = false ]]
3086	then
3087	printf "\n file will be restored from archive-system ($archive_system)!"
3088	else
3089	printf "\n directory will be restored from archive-system ($archive_system)!"
3090	fi
3091
3092	file_restored=false
3093
3094	if [[ $archive_system = asterix ]]
3095	then
3096	do_stagein=true
3097	(( stagein_anz = 0 ))
3098	while [[ $do_stagein = true ]]
3099	do
3100	if [[ $files_for_pes = false ]]
3101	then
3102	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
3103	else
3104	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
3105	fi
3106	cat STAGEIN_OUTPUT
3107	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
3108	then
3109	file_restored=true
3110	do_stagein=false
3111	else
3112	(( stagein_anz = stagein_anz + 1 ))
3113	if (( stagein_anz == 10 ))
3114	then
3115	printf "\n +++ stagein stoped after 10 tries"
3116	locat=stage
3117	exit
3118	fi
3119	printf "\n +++ restoring from archive failed, trying again:"
3120	sleep 900
3121	fi
3122	done
3123	elif [[ $archive_system = DMF ]]
3124	then
3125	if [[ $files_for_pes = false ]]
3126	then
3127	printf "\n +++ restoring of single files impossible with $archive_system !\n"
3128	locat=DMF
3129	exit
3130	else
3131	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
3132	cp -r $ARCHIVE/${frelin[$i]} $PWD
3133	file_restored=true
3134	fi
3135	elif [[ $archive_system = tivoli ]]
3136	then
3137	if [[ $files_for_pes = false ]]
3138	then
3139	if [[ $localhost = lcsgih ]]
3140	then
3141	ssh $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3142	else
3143	ssh $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3144	fi
3145	else
3146	(( inode = 0 ))
3147	while (( inode < nodes ))
3148	do
3149	if [[ $localhost = lcsgih ]]
3150	then
3151	ssh $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3152	else
3153	ssh $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3154	fi
3155	(( inode = inode + 1 ))
3156	done
3157	fi
3158	file_restored=true
3159	elif [[ $archive_system = ut ]]
3160	then
3161	if [[ $files_for_pes = false ]]
3162	then
3163	cp $UT/${frelin[$i]} .
3164	else
3165	(( inode = 0 ))
3166	while (( inode < nodes ))
3167	do
3168	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
3169	(( inode = inode + 1 ))
3170	done
3171	fi
3172	file_restored=true
3173	else
3174	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
3175	locat=rearchive
3176	exit
3177	fi
3178
3179	if [[ $file_restored = true ]]
3180	then
3181
3182	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
3183	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
3184	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
3185	if [[ $files_for_pes = false ]]
3186	then
3187	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
3188	else
3189	mkdir $tmp_data_catalog/${frelin[$i]}
3190	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
3191	fi
3192	got_tmp[$i]=true
3193
3194	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
3195	mv ${frelin[$i]} ${localin[$i]}
3196
3197	fi
3198	fi
3199
3200
3201	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
3202	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
3203	then
3204
3205	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
3206	then
3207
3208	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
3209	printf "\n file will be provided for $numprocs processors"
3210	mkdir ${localin[$i]}
3211	ival=$numprocs
3212	(( ii = 0 ))
3213	while (( ii <= ival-1 ))
3214	do
3215	if (( ii < 10 ))
3216	then
3217	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
3218	elif (( ii < 100 ))
3219	then
3220	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
3221	elif (( ii < 1000 ))
3222	then
3223	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
3224	else
3225	cp ${absnamein[$i]} ${localin[$i]}/_$ii
3226	fi
3227	(( ii = ii + 1 ))
3228	done
3229
3230	else
3231
3232	if [[ $files_for_pes = true ]]
3233	then
3234
3235	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
3236	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
3237	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
3238	# PER MOVE UMBENANNT WERDEN
3239	printf "\n providing $numprocs files for the respective processors"
3240	mkdir ${localin[$i]}
3241	if [[ $link_local_input = true ]]
3242	then
3243	printf " using ln -f\n"
3244	cd ${absnamein[$i]}
3245	for file in $(ls *)
3246	do
3247	ln -f $file ${localin[$i]}
3248	done
3249	cd $TEMPDIR
3250	fi
3251	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
3252	if [[ ! -f "${localin[$i]}/_0000" ]]
3253	then
3254	if [[ $link_local_input = true ]]
3255	then
3256	printf " ln failed for .../_0000, using cp...\n"
3257	fi
3258	cp -r ${absnamein[$i]}/* ${localin[$i]}
3259	fi
3260
3261	else
3262	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
3263	if [[ $link_local_input = true ]]
3264	then
3265	printf " using ln -f\n"
3266	ln -f ${absnamein[$i]} ${localin[$i]}
3267	fi
3268	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
3269	if [[ ! -f "${localin[$i]}" ]]
3270	then
3271	if [[ $link_local_input = true ]]
3272	then
3273	printf " ln failed, using cp...\n"
3274	fi
3275	cp ${absnamein[$i]} ${localin[$i]}
3276	fi
3277	fi
3278	fi
3279	fi
3280
3281	done
3282	if (( i != 0 ))
3283	then
3284	printf "\n$striche\n *** all INPUT-files provided \n"
3285	fi
3286
3287
3288	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
3289	(( i = 0 ))
3290	while (( i < iic ))
3291	do
3292	(( i = i + 1 ))
3293	if (( i == 1 ))
3294	then
3295	printf "\n\n *** execution of INPUT-commands:\n$striche"
3296	fi
3297	printf "\n >>> ${in_command[$i]}"
3298	eval ${in_command[$i]}
3299	if (( i == iic ))
3300	then
3301	printf "\n$striche\n"
3302	fi
3303	done
3304
3305
3306	# VERBLEIBENDE CPU-ZEIT BERECHNEN
3307	cpurest=${cpumax}.
3308
3309
3310	# START DVR STREAMING SERVER
3311	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3312	then
3313	if [[ "$dvr_server" != "" ]]
3314	then
3315
3316	printf "\n\n *** preparing the dvr streaming server configuration file"
3317
3318	# Check, if a dvr server is already running
3319	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
3320	if [[ "$running_dvrserver_id" != "" ]]
3321	then
3322
3323	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
3324	printf "\n This server is used instead starting a new one!"
3325	printf "\n If required, script \"process_dvr_output\" has to be run manually."
3326
3327	else
3328
3329	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
3330	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
3331	then
3332	cp ${PALM_BIN}/.dvrserver.config .
3333
3334	# Entering the BASEDIR, UID and GID into this file
3335	user_id=`id -u`
3336	group_id=`id -g`
3337	# & is needed as seperator, because TEMPDIR contains /
3338	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
3339	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
3340	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
3341	mv .dvrserver.3 .dvrserver.config
3342	rm .dvrserver.1 .dvrserver.2
3343
3344	# Start dvr server in background, get his id and print on terminal
3345	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
3346	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
3347	printf "\n *** streaming server with id=$dvrserver_id is started in background"
3348	local_dvrserver_running=.TRUE.
3349	else
3350	printf "\n +++ missing file \".dvrserver.config\" in directory:"
3351	printf "\n \"$PALM_BIN\" "
3352	locat=dvr
3353	exit
3354	fi
3355
3356	fi
3357
3358	else
3359	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
3360	fi
3361	fi
3362
3363
3364	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
3365	# LESEN VON PALM)
3366	cat > ENVPAR << %%END%%
3367	&envpar run_identifier = '$fname', host = '$localhost',
3368	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
3369	maximum_parallel_io_streams = $maximum_parallel_io_streams,
3370	maximum_cpu_time_allowed = ${cpumax}.,
3371	revision = '$global_revision',
3372	local_dvrserver_running = $local_dvrserver_running /
3373
3374	%%END%%
3375
3376
3377	# PROGRAMMSTART
3378	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
3379	PATH=$PATH:$TEMPDIR
3380
3381	# MPI debug option (argument checking, slows down execution due to increased latency)
3382	if [[ "$mpi_debug" = true ]]
3383	then
3384	export MPI_CHECK_ARGS=1
3385	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
3386	fi
3387
3388	if [[ "$totalview" = true ]]
3389	then
3390	printf "\n *** totalview debugger will be used"
3391	tv_opt="-tv"
3392	else
3393	tv_opt=""
3394	fi
3395
3396	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
3397	then
3398	if [[ "$ENVIRONMENT" = BATCH ]]
3399	then
3400	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
3401	then
3402	printf "\n +++ debug is allowed in interactive mode only"
3403	locat=debug
3404	exit
3405	fi
3406	fi
3407	if [[ $localhost = decalpha ]]
3408	then
3409	dxladebug a.out
3410	elif [[ $localhost = ibmh ]]
3411	then
3412
3413	# SETUP THE IBM MPI ENVIRONMENT
3414	export MP_SHARED_MEMORY=yes
3415	export AIXTHREADS_SCOPE=S
3416	export OMP_NUM_THREADS=$threads_per_task
3417	export AUTHSTATE=files
3418	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3419
3420	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
3421	export MP_ADAPTER_USE=shared
3422	export MP_CPU_USE=multiple
3423	export MP_TIMEOUT=1200
3424
3425	unset MP_TASK_AFFINITY
3426
3427	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
3428	#(( ii = 1 ))
3429	#while (( ii <= $numprocs ))
3430	#do
3431	# echo $localhost_realname >> hostfile
3432	# (( ii = ii + 1 ))
3433	#done
3434	#export MP_HOSTFILE=hostfile
3435
3436	if [[ "$LOADLBATCH" = yes ]]
3437	then
3438	totalview poe a.out $ROPTS
3439	else
3440	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3441	export TVDSVRLAUNCHCMD=ssh
3442	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3443	fi
3444	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
3445	then
3446	# CURRENTLY NO DEBUGGER ON LCSGI
3447	if [[ $run_coupled_model = true ]]
3448	then
3449	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
3450	locat=debug
3451	exit
3452	else
3453	echo "no_coupling" > runfile_atmos
3454	fi
3455	(( ii = $numprocs / $threads_per_task ))
3456	export OMP_NUM_THREADS=$threads_per_task
3457	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3458	if [[ $threads_per_task != 1 ]]
3459	then
3460	printf "\n threads per task: $threads_per_task"
3461	fi
3462	printf "\n\n"
3463	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3464	then
3465	# export MPI_LAUNCH_TIMEOUT=360
3466	if [[ "$totalview" = true ]]
3467	then
3468	printf "\n running totalview debugger"
3469	mpiexec_mpt $tv_opt -n $ii ./a.out $ROPTS < runfile_atmos
3470	else
3471	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3472	fi
3473	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3474	then
3475	# ulimit -s 300000 # A too large stack size causes problems
3476	# export MV2_NUM_PORTS=2
3477	# export MV2_CPU_MAPPING=0:1:2:3
3478	if [[ "$totalview" = true ]]
3479	then
3480	printf "\n running totalview debugger"
3481	mpiexec $tv_opt ./a.out $ROPTS < runfile_atmos
3482	else
3483	mpiexec ./a.out $ROPTS < runfile_atmos
3484	fi
3485	fi
3486	else
3487	printf "\n +++ no debug available on \"$localhost\" "
3488	printf "\n or not implemented in mrun so far"
3489	locat=debug
3490	exit
3491	fi
3492
3493	# end debug mode
3494	else
3495
3496	# normal execution
3497	if [[ -n $numprocs ]]
3498	then
3499	# RUNNING THE PROGRAM ON PARALLEL MACHINES
3500	if [[ $(echo $host \| cut -c1-3) = ibm ]]
3501	then
3502	# SETUP THE IBM MPI ENVIRONMENT
3503	if [[ $host != ibmh && $host != ibmkisti ]]
3504	then
3505	export MP_SHARED_MEMORY=yes
3506	export AIXTHREAD_SCOPE=S
3507	export OMP_NUM_THREADS=$threads_per_task
3508	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
3509	export AUTHSTATE=files
3510	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3511	# export MP_PRINTENV=yes
3512
3513	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3514	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3515	export MP_WAIT_MODE=poll
3516	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3517	fi
3518
3519	if [[ $host = ibmkisti ]]
3520	then
3521	export LANG=en_US
3522	export MP_SHARED_MEMORY=yes
3523	if [[ $threads_per_task = 1 ]]
3524	then
3525	export MP_SINGLE_THREAD=yes
3526	export MEMORY_AFFINITY=MCM
3527	else
3528	export OMP_NUM_THREADS=$threads_per_task
3529	fi
3530	fi
3531
3532	if [[ "$LOADLBATCH" = yes ]]
3533	then
3534	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3535	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3536	then
3537	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3538	else
3539	if [[ $run_coupled_model = false ]]
3540	then
3541	if [[ "$ocean_file_appendix" = true ]]
3542	then
3543	echo "precursor_ocean" > runfile_atmos
3544	else
3545	echo "precursor_atmos" > runfile_atmos
3546	fi
3547	else
3548	(( iia = $numprocs_atmos / $threads_per_task ))
3549	(( iio = $numprocs_ocean / $threads_per_task ))
3550	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3551	printf "\n using $coupled_mode coupling"
3552	printf "\n\n"
3553	echo "coupled_run $iia $iio" > runfile_atmos
3554	fi
3555	poe ./a.out $ROPTS < runfile_atmos
3556	fi
3557	else
3558	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
3559	then
3560	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3561	elif [[ $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibmy ]]
3562	then
3563	if [[ -f $hostfile ]]
3564	then
3565	cp $hostfile hostfile
3566	else
3567	(( ii = 1 ))
3568	while (( ii <= $numprocs ))
3569	do
3570	echo $localhost_realname >> hostfile
3571	(( ii = ii + 1 ))
3572	done
3573	fi
3574	export MP_HOSTFILE=hostfile
3575	if [[ $run_coupled_model = false ]]
3576	then
3577	if [[ "$ocean_file_appendix" = true ]]
3578	then
3579	echo "precursor_ocean" > runfile_atmos
3580	else
3581	echo "precursor_atmos" > runfile_atmos
3582	fi
3583	else
3584	(( iia = $numprocs_atmos / $threads_per_task ))
3585	(( iio = $numprocs_ocean / $threads_per_task ))
3586	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3587	printf "\n using $coupled_mode coupling"
3588	printf "\n\n"
3589	echo "coupled_run $iia $iio" > runfile_atmos
3590	fi
3591	if [[ $localhost = ibmy ]]
3592	then
3593	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3594	else
3595	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
3596	fi
3597
3598	else
3599	if [[ "$host_file" = "" ]]
3600	then
3601	printf "\n +++ no hostfile given in configuration file"
3602	locat=config_file
3603	exit
3604	else
3605	eval host_file=$host_file
3606	fi
3607	export MP_HOSTFILE=$host_file
3608	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3609	fi
3610	fi
3611	elif [[ $host = nech \|\| $host = necriam ]]
3612	then
3613	(( ii = nodes ))
3614	if [[ $ii = 1 ]]
3615	then
3616	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3617	export MPIPROGINF=YES
3618	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3619	echo "*** execution on single node with mpirun"
3620	mpirun -np $numprocs ./a.out $ROPTS
3621	else
3622	(( i = 0 ))
3623	while (( i < ii ))
3624	do
3625	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3626	(( i = i + 1 ))
3627	done
3628
3629	echo "#!/bin/sh" > mpi_exec_shell
3630	echo " " >> mpi_exec_shell
3631	echo "set -u" >> mpi_exec_shell
3632	echo "F_ERRCNT=0" >> mpi_exec_shell
3633	echo "MPIPROGINV=YES" >> mpi_exec_shell
3634	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3635	echo "cpurest=$cpurest" >> mpi_exec_shell
3636	echo "fname=$fname" >> mpi_exec_shell
3637	echo "localhost=$localhost" >> mpi_exec_shell
3638	echo "return_addres=$return_addres" >> mpi_exec_shell
3639	echo "return_username=$return_username" >> mpi_exec_shell
3640	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3641	echo "write_binary=$write_binary" >> mpi_exec_shell
3642	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3643	echo " " >> mpi_exec_shell
3644	echo "export F_ERRCNT" >> mpi_exec_shell
3645	echo "export MPIPROGINV" >> mpi_exec_shell
3646	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3647	echo "export cpurest" >> mpi_exec_shell
3648	echo "export fname" >> mpi_exec_shell
3649	echo "export localhost" >> mpi_exec_shell
3650	echo "export return_addres" >> mpi_exec_shell
3651	echo "export return_username" >> mpi_exec_shell
3652	echo "export tasks_per_node" >> mpi_exec_shell
3653	echo "export write_binary" >> mpi_exec_shell
3654	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3655	echo " " >> mpi_exec_shell
3656	echo "exec ./a.out" >> mpi_exec_shell
3657
3658	chmod u+x mpi_exec_shell
3659	export MPIPROGINF=YES
3660	mpirun -f multinode_config &
3661	wait
3662
3663	fi
3664	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
3665	then
3666
3667	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3668	# DOES NOT EXIST
3669	if [[ $host != lcsgih && $host != lcsgib ]]
3670	then
3671	if [[ -f $hostfile ]]
3672	then
3673	cp $hostfile hostfile
3674	(( ii = $numprocs / $threads_per_task ))
3675	else
3676	(( ii = 1 ))
3677	while (( ii <= $numprocs / $threads_per_task ))
3678	do
3679	echo $localhost_realname >> hostfile
3680	(( ii = ii + 1 ))
3681	done
3682	fi
3683	eval zeile=\"`head -n $ii hostfile`\"
3684	printf "\n *** running on: $zeile"
3685	fi
3686
3687	(( ii = $numprocs / $threads_per_task ))
3688	export OMP_NUM_THREADS=$threads_per_task
3689	# echo "*** OMP_NUM_THREADS=$OMP_NUM_THREADS"
3690	if [[ $threads_per_task != 1 ]]
3691	then
3692	# increase stack size to unlimited, because large runs
3693	# may abort otherwise
3694	ulimit -Ss unlimited
3695	printf "\n threads per task: $threads_per_task stacksize: unlimited"
3696	fi
3697	if [[ $run_coupled_model = false ]]
3698	then
3699	if [[ "$ocean_file_appendix" = true ]]
3700	then
3701	echo "precursor_ocean" > runfile_atmos
3702	else
3703	echo "precursor_atmos" > runfile_atmos
3704	fi
3705	printf "\n\n"
3706	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3707	then
3708	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3709	then
3710	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3711	# export MPI_DSM_DISTRIBUTE=1
3712	# MPI_DSM_CPULIST: pin MPI processes to cores
3713	if [[ $use_openmp = false ]]
3714	then
3715	if [[ "$sgi_feature" = ice2 ]]
3716	then
3717	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
3718	else
3719	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3720	fi
3721	else
3722	unset MPI_DSM_CPULIST
3723	fi
3724	# MPI_IB_RAILS: use both IB rails on ICE2
3725	export MPI_BUFS_PER_HOST=512
3726	export MPI_IB_RAILS=2
3727	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3728	export MPI_CONNECTIONS_THRESHOLD=8192
3729	# echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
3730	export MPI_TYPE_DEPTH=20
3731	# echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
3732	export MPI_GROUP_MAX=64
3733	# echo "*** MPI_GROUP_MAX=$MPI_GROUP_MAX"
3734	if [[ $use_openmp = true ]]
3735	then
3736	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3737	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3738	else
3739	mpiexec_mpt -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3740	fi
3741
3742	# next is test for openmp usage
3743	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3744	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
3745	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3746	then
3747	export MV2_NUM_PORTS=2
3748	# The default setting of MV2_CPU_MAPPING gives best results
3749	# export MV2_ENABLE_AFFINITY=1
3750	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3751	# if [[ "$sgi_feature" = ice2 ]]
3752	# then
3753	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
3754	# else
3755	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3756	# fi
3757	if [[ $use_openmp = true ]]
3758	then
3759	unset MV2_CPU_MAPPING
3760	export MV2_ENABLE_AFFINITY=0
3761	fi
3762	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
3763	echo "*** MV2_ENABLE_AFFINITY=$MV2_ENABLE_AFFINITY"
3764	if [[ $use_openmp = true ]]
3765	then
3766	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3767	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3768	else
3769	mpiexec -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3770	fi
3771	elif [[ "$mpilib" = impi ]]
3772	then
3773	echo "mpirun -np $tasks_per_node inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos"
3774	mpirun -np $tasks_per_node inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos
3775	fi
3776	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3777	then
3778	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3779	elif [[ $host = lcflow ]]
3780	then
3781	mpiexec -machinefile $TMPDIR/machines -n $ii -env I_MPI_FABRICS shm:ofa a.out < runfile_atmos $ROPTS
3782	else
3783	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3784	fi
3785	else
3786
3787	# currently there is no full MPI-2 support on ICE and XT4
3788	(( iia = $numprocs_atmos / $threads_per_task ))
3789	(( iio = $numprocs_ocean / $threads_per_task ))
3790	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3791	printf "\n using $coupled_mode coupling"
3792	printf "\n\n"
3793
3794	if [[ $coupled_mode = "mpi2" ]]
3795	then
3796	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3797	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3798	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3799	then
3800
3801	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3802	then
3803	# export MPI_LAUNCH_TIMEOUT=360
3804	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3805	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3806	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3807	then
3808	# ulimit -s 300000 # A too large stack size causes problems
3809	# export MV2_NUM_PORTS=2
3810	# export MV2_CPU_MAPPING=0:1:2:3
3811	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3812	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3813	fi
3814
3815	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3816	then
3817
3818	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3819	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3820
3821	else
3822	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3823	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3824	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3825	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3826	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3827	fi
3828	wait
3829
3830	else
3831
3832	echo "coupled_run $iia $iio" > runfile_atmos
3833	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3834	then
3835
3836	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3837	then
3838	# export MPI_LAUNCH_TIMEOUT=360
3839	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3840	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3841	then
3842	# ulimit -s 300000 # A too large stack size causes problems
3843	# export MV2_NUM_PORTS=2
3844	# export MV2_CPU_MAPPING=0:1:2:3
3845	mpiexec ./a.out $ROPTS < runfile_atmos
3846	fi
3847
3848	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3849	then
3850
3851	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3852
3853	elif [[ $host = lck \|\| $host = lckordi ]]
3854	then
3855	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3856	fi
3857	wait
3858	fi
3859
3860	fi
3861	elif [[ $host = decalpha ]]
3862	then
3863	dmpirun -np $numprocs a.out $ROPTS
3864	elif [[ $host = lckyoto ]]
3865	then
3866	set -xv
3867	export P4_RSHCOMMAND=plesh
3868	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
3869	if [[ "$ENVIRONMENT" = BATCH ]]
3870	then
3871	if [[ "$cond2" = fujitsu ]]
3872	then
3873	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
3874	elif [[ "cond2" = pgi ]]
3875	then
3876	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
3877	else
3878	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
3879	fi
3880	else
3881	if [[ "$cond2" = "" ]]
3882	then
3883	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
3884	else
3885	mpirun -np $numprocs ./a.out $ROPTS
3886	fi
3887	fi
3888	set +xv
3889	elif [[ $host = lctit ]]
3890	then
3891	export OMP_NUM_THREADS=$threads_per_task
3892	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3893	if [[ "$threads_per_task" != 1 ]]
3894	then
3895	export MV2_ENABLE_AFFINITY=0
3896	fi
3897	echo "----- PBS_NODEFILE content:"
3898	cat $PBS_NODEFILE
3899	echo "-----"
3900	(( ii = $numprocs / $threads_per_task ))
3901	echo "mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS"
3902	mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS
3903	else
3904	mpprun -n $numprocs a.out $ROPTS
3905	fi
3906	[[ $? != 0 ]] && execution_error=true
3907
3908
3909	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3910	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3911	then
3912	apprentice
3913	fi
3914	else
3915	a.out $ROPTS
3916	fi
3917	fi
3918	if [[ $? != 0 \|\| $execution_error = true ]]
3919	then
3920
3921	# ABBRUCH BEI LAUFZEITFEHLER
3922	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3923	printf "\n +++ runtime error occured"
3924	locat=execution
3925	exit
3926	else
3927	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3928	printf "\n$striche\n *** execution finished \n"
3929
3930	# Stop the dvr streaming server and process the dvr output in order
3931	# to create dvrs- and html-files containing all streams
3932	if [[ "$dvrserver_id" != "" ]]
3933	then
3934	kill $dvrserver_id
3935	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3936
3937	# If there is a directory, data have been output by the
3938	# streaming server. Otherwise, user has chosen dvrp_output=local
3939	if [[ -d DATA_DVR ]]
3940	then
3941
3942	# Add the current dvr configuration file to the dvr output
3943	# directory
3944	cp .dvrserver.config DATA_DVR
3945
3946	# Process the dvr output (option -s for also generating
3947	# sequence mode data)
3948	process_dvr_output -d DATA_DVR -f $fname -s
3949
3950	else
3951
3952	# Process the local output
3953	process_dvr_output -l -d DATA_DVR -f $fname
3954
3955	fi
3956
3957	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3958	then
3959
3960	# Process dvr output generated in local mode (dvrp_output=local)
3961	process_dvr_output -l -d DATA_DVR -f $fname
3962
3963	fi
3964	fi
3965
3966
3967
3968	# Call of combine_plot_fields in order to merge single files written
3969	# by each PE into one file.
3970	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
3971	then
3972	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
3973	printf "\n 2d- and/or 3d-data may be incomplete!"
3974	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
3975	else
3976	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
3977	combine_plot_fields${block}.x
3978	fi
3979
3980
3981
3982	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3983	(( i = 0 ))
3984	while (( i < ioc ))
3985	do
3986	(( i = i + 1 ))
3987	if (( i == 1 ))
3988	then
3989	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
3990	fi
3991	printf "\n >>> ${out_command[$i]}"
3992	eval ${out_command[$i]}
3993	if (( i == ioc ))
3994	then
3995	printf "\n$striche\n"
3996	fi
3997	done
3998
3999
4000	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
4001	if [[ $do_trace = true ]]
4002	then
4003	printf "\n\n"
4004	ls -al
4005	fi
4006
4007
4008
4009	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
4010	(( i = 0 ))
4011	while (( i < iout ))
4012	do
4013	(( i = i + 1 ))
4014	if (( i == 1 ))
4015	then
4016	printf "\n\n *** saving OUTPUT-files:\n$striche"
4017	fi
4018
4019	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
4020	files_for_pes=false; filetyp=file
4021	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
4022	then
4023	files_for_pes=true; filetyp=directory
4024	actionout[$i]=""
4025	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
4026	then
4027	actionout[$i]=""
4028	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
4029	then
4030	files_for_pes=true; filetyp=directory
4031	actionout[$i]="ar"
4032	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
4033	then
4034	actionout[$i]="ar"
4035	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
4036	then
4037	files_for_pes=true; filetyp=directory
4038	actionout[$i]="fl"
4039	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
4040	then
4041	actionout[$i]="fl"
4042	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
4043	then
4044	files_for_pes=true; filetyp=directory
4045	actionout[$i]="tr"
4046	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
4047	then
4048	actionout[$i]="tr"
4049	fi
4050
4051	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
4052	then
4053	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
4054	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
4055	then
4056	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
4057	else
4058
4059
4060	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
4061	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
4062	# REMOTE-RECHNUNGEN
4063	if [[ "${actionout[$i]}" = tr ]]
4064	then
4065	if [[ $localhost != $fromhost ]]
4066	then
4067	if [[ $files_for_pes = false ]]
4068	then
4069	cps=""
4070	cst=""
4071	else
4072	cps=-c
4073	cst="/"
4074	fi
4075	if [[ $localhost = nech ]]
4076	then
4077
4078	# TRANSFER IN EIGENSTAENDIGEM JOB
4079	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4080	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4081	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4082	if [[ $files_for_pes = false ]]
4083	then
4084	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4085	else
4086	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
4087	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
4088	fi
4089
4090	echo "set -x" > transfer_${localout[$i]}
4091	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4092
4093	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
4094	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
4095	printf "\n or higher cycle\n"
4096	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4097
4098	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4099
4100	if [[ $localhost = nech ]]
4101	then
4102	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
4103	else
4104	if [[ "$LOGNAME" = b323013 ]]
4105	then
4106	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
4107	else
4108	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
4109	fi
4110	fi
4111
4112	else
4113
4114	# TRANSFER INNERHALB DIESES JOBS
4115	transfer_failed=false
4116	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
4117	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
4118	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4119	[[ $? != 0 ]] && transfer_failed=true
4120
4121	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4122	# LOKALER MASCHINE ANLEGEN
4123	if [[ $transfer_failed = true ]]
4124	then
4125	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4126	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4127
4128	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4129	# ANLEGEN.
4130	eval local_catalog=${pathout[$i]}
4131	if [[ ! -d $local_catalog ]]
4132	then
4133	printf " *** local directory does not exist. Trying to create:\n"
4134	printf " $local_catalog \n"
4135	mkdir -p $local_catalog
4136	fi
4137	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4138	transfer_problems=true
4139	fi
4140	fi
4141	else
4142
4143	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
4144	actionout[$i]=""
4145	fi
4146	fi
4147
4148
4149	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
4150	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
4151	# REMOTE-RECHNUNGEN
4152	if [[ "${actionout[$i]}" = tra ]]
4153	then
4154	if [[ $localhost != $fromhost ]]
4155	then
4156	if [[ $localhost = ibmh \|\| $localhost = nech ]]
4157	then
4158
4159	# TRANSFER IN EIGENSTAENDIGEM JOB
4160	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4161	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4162	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4163	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4164
4165	echo "set -x" > transfer_${localout[$i]}
4166	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4167
4168	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
4169	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
4170	printf "\n or higher cycle\n"
4171	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4172
4173	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4174
4175	if [[ $localhost = nech ]]
4176	then
4177	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
4178	else
4179	if [[ $LOGNAME = b323013 ]]
4180	then
4181	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
4182	else
4183	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
4184	fi
4185	fi
4186
4187	else
4188
4189	# TRANSFER INNERHALB DIESES JOBS
4190	transfer_failed=false
4191	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
4192	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
4193	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4194	[[ $? != 0 ]] && transfer_failed=true
4195
4196	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4197	# LOKALER MASCHINE ANLEGEN
4198	if [[ $transfer_failed = true ]]
4199	then
4200	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4201	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4202
4203	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4204	# ANLEGEN
4205	eval local_catalog=${pathout[$i]}
4206	if [[ ! -d $local_catalog ]]
4207	then
4208	printf " *** local directory does not exist. Trying to create:\n"
4209	printf " $local_catalog \n"
4210	mkdir -p $local_catalog
4211	fi
4212
4213	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4214	transfer_problems=true
4215	fi
4216	fi
4217	else
4218
4219	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
4220	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
4221	actionout[$i]=a
4222	fi
4223	fi
4224
4225
4226	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
4227	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
4228	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
4229	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
4230	if [[ "${actionout[$i]}" = fl ]]
4231	then
4232	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4233	chmod g+rx $tmp_data_catalog
4234	if [[ $files_for_pes = false ]]
4235	then
4236	printf "\n >>> OUTPUT: ${localout[$i]} to"
4237	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4238	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
4239	else
4240	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
4241	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4242	mkdir $tmp_data_catalog/${frelout[$i]}
4243	cd ${localout[$i]}
4244	for file in $(ls *)
4245	do
4246	ln -f $file $tmp_data_catalog/${frelout[$i]}
4247	done
4248	cd $TEMPDIR
4249	fi
4250
4251
4252	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
4253	if [[ $store_on_archive_system = true ]]
4254	then
4255
4256	if [[ $archive_system = asterix ]]
4257	then
4258	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4259	if [[ $files_for_pes = false ]]
4260	then
4261	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4262	else
4263	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4264	fi
4265	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4266	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
4267	echo "then" >> archive_${frelout[$i]}
4268	echo " do_stageout=false" >> archive_${frelout[$i]}
4269	echo "else" >> archive_${frelout[$i]}
4270	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
4271	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
4272	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
4273	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
4274	if [[ $files_for_pes = false ]]
4275	then
4276	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
4277	else
4278	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
4279	fi
4280	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
4281	echo "fi" >> archive_${frelout[$i]}
4282	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4283	elif [[ $archive_system = DMF ]]
4284	then
4285	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4286	if [[ $files_for_pes = false ]]
4287	then
4288	printf "\n +++ archiving of single files impossible with $archive_system !\n"
4289	locat=DMF
4290	exit
4291	else
4292	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
4293	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
4294	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
4295	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
4296	fi
4297	elif [[ $archive_system = tivoli ]]
4298	then
4299	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4300	if [[ $files_for_pes = false ]]
4301	then
4302	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4303	echo "set -x" >> archive_${frelout[$i]}
4304	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4305	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4306	else
4307
4308	echo "set -x" >> archive_${frelout[$i]}
4309	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
4310	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4311	cd $tmp_data_catalog
4312	all_files=`ls -1 ${frelout[$i]}/*`
4313	cd - > /dev/null
4314	(( inode = 0 ))
4315	(( tp1 = tasks_per_node + 1 ))
4316	while (( inode < nodes ))
4317	do
4318	# echo "*** all_files = \"$all_files\" "
4319	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4320	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4321	# echo "*** tasks_per_node = \"$tasks_per_node\" "
4322	# echo "*** files = \"$files\" "
4323	# echo "*** all_files = \"$all_files\" "
4324	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4325	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4326	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
4327	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4328	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4329	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4330	(( inode = inode + 1 ))
4331	done
4332	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4333	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4334	fi
4335	elif [[ $archive_system = ut ]]
4336	then
4337	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4338	if [[ $files_for_pes = false ]]
4339	then
4340	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4341	echo "set -x" >> archive_${frelout[$i]}
4342	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4343	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4344	else
4345
4346	echo "set -x" >> archive_${frelout[$i]}
4347	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
4348	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
4349	cd $tmp_data_catalog
4350	all_files=`ls -1 ${frelout[$i]}/*`
4351	cd - > /dev/null
4352	(( inode = 0 ))
4353	(( tp1 = tasks_per_node + 1 ))
4354	while (( inode < nodes ))
4355	do
4356	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4357	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4358	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4359	(( inode = inode + 1 ))
4360	done
4361	fi
4362	elif [[ $archive_system = none ]]
4363	then
4364	printf " +++ archiving on $localhost not available!\n"
4365	fi
4366
4367	if [[ $archive_system != none ]]
4368	then
4369	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
4370	then
4371	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
4372	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog archive_${frelout[$i]}
4373	elif [[ $localhost = nech ]]
4374	then
4375	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
4376	fi
4377	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4378	fi
4379	else
4380	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
4381	fi
4382
4383
4384	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
4385	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4386	if [[ $files_for_pes = false ]]
4387	then
4388	cat /dev/null > ${pathout[$i]}
4389	else
4390	mkdir -p ${pathout[$i]}
4391	fi
4392
4393	fi
4394
4395
4396	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
4397	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
4398	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4399	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
4400	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
4401	# GEMAESSEN ARCHIVIERUNGEN GESETZT
4402	if [[ "${actionout[$i]}" = ar ]]
4403	then
4404	if [[ $files_for_pes = false ]]
4405	then
4406	printf "\n >>> OUTPUT: ${localout[$i]} to"
4407	printf "\n ${pathout[$i]}"
4408	printf "\n File will be copied to archive-system ($archive_system) !\n"
4409	else
4410	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
4411	printf "\n ${pathout[$i]}"
4412	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
4413	fi
4414	mv ${localout[$i]} ${frelout[$i]}
4415
4416	file_saved=false
4417
4418	if [[ $archive_system = asterix ]]
4419	then
4420	do_stageout=true
4421	(( stageout_anz = 0 ))
4422	while [[ $do_stageout = true ]]
4423	do
4424	if [[ $files_for_pes = false ]]
4425	then
4426	stageout ${frelout[$i]} > STAGE_OUTPUT
4427	else
4428	stageout -t ${frelout[$i]} > STAGE_OUTPUT
4429	fi
4430	cat STAGE_OUTPUT
4431	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
4432	then
4433	file_saved=true
4434	do_stageout=false
4435	else
4436	if [[ $files_for_pes = false ]]
4437	then
4438	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
4439	else
4440	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
4441	fi
4442	(( stageout_anz = stageout_anz + 1 ))
4443	if (( stageout_anz == 10 ))
4444	then
4445	printf "\n +++ stoped after 10 unsuccessful tries!"
4446	archive_save=false
4447	do_stageout=false
4448	else
4449	printf "\n *** new try to store on archive after 15 min:"
4450	sleep 900
4451	fi
4452	fi
4453	done
4454	elif [[ $archive_system = DMF ]]
4455	then
4456	if [[ $files_for_pes = false ]]
4457	then
4458	printf "\n +++ archiving of single files impossible on $archive_system!\n"
4459	locat=DMF
4460	exit
4461	else
4462	rm -rf $ARCHIVE/${frelout[$i]}
4463	cp -r ${frelout[$i]} $ARCHIVE
4464	fi
4465	file_saved=true
4466	elif [[ $archive_system = tivoli ]]
4467	then
4468	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4469	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4470	# GELEGT WERDEN
4471	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4472	chmod g+rx $tmp_data_catalog
4473	if [[ $files_for_pes = false ]]
4474	then
4475	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4476	else
4477	mkdir $tmp_data_catalog/${frelout[$i]}
4478	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4479	fi
4480
4481	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4482	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4483	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4484	if [[ $files_for_pes = false ]]
4485	then
4486	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4487	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4488	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4489	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4490	else
4491	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4492	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4493	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4494	fi
4495
4496	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
4497	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4498	file_saved=true
4499
4500	elif [[ $archive_system = ut ]]
4501	then
4502	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4503	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4504	# GELEGT WERDEN
4505	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4506	chmod g+rx $tmp_data_catalog
4507	if [[ $files_for_pes = false ]]
4508	then
4509	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4510	else
4511	mkdir $tmp_data_catalog/${frelout[$i]}
4512	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4513	fi
4514
4515	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4516	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4517	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4518	if [[ $files_for_pes = false ]]
4519	then
4520	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4521	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4522	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4523	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4524	else
4525	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4526	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4527	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4528	fi
4529
4530	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
4531	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4532	file_saved=true
4533
4534	else
4535	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
4536	archive_save=false
4537	fi
4538	if [[ $file_saved = true ]]
4539	then
4540	if [[ $files_for_pes = false ]]
4541	then
4542	cat /dev/null > ${pathout[$i]}
4543	else
4544	mkdir -p ${pathout[$i]}
4545	fi
4546	fi
4547	fi
4548
4549	# APPEND AUF LOKALER MASCHINE
4550	if [[ "${actionout[$i]}" = "a" ]]
4551	then
4552	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4553	then
4554	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}.${extout[$i]}\n"
4555	cat ${localout[$i]} >> ${pathout[$i]}.${extout[$i]}
4556	else
4557	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
4558	cat ${localout[$i]} >> ${pathout[$i]}
4559	fi
4560	fi
4561
4562	# KOPIEREN AUF LOKALER MASCHINE
4563	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
4564	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
4565	then
4566
4567	# KOPIEREN AUF EINPROZESSORMASCHINE
4568	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4569	then
4570	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
4571	if [[ $link_local_output = true ]]
4572	then
4573	printf " using ln -f\n"
4574	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4575	fi
4576	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4577	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
4578	then
4579	if [[ $link_local_output = true ]]
4580	then
4581	printf " ln failed, using cp...\n"
4582	fi
4583	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4584	fi
4585	else
4586	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
4587	if [[ $link_local_output = true ]]
4588	then
4589	printf " using ln -f\n"
4590	ln -f ${localout[$i]} ${pathout[$i]}
4591	fi
4592	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4593	if [[ ! -f "${pathout[$i]}" ]]
4594	then
4595	if [[ $link_local_output = true ]]
4596	then
4597	printf " ln failed, using cp...\n"
4598	fi
4599	cp ${localout[$i]} ${pathout[$i]}
4600	fi
4601	fi
4602
4603	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
4604	then
4605
4606	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
4607	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
4608	# WIRD DANN KOPIERT
4609	# PER MOVE UMBENANNT WERDEN
4610	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4611	if [[ $link_local_output = true ]]
4612	then
4613	printf " using ln -f\n"
4614	mkdir ${pathout[$i]}
4615	cd ${localout[$i]}
4616	for file in $(ls *)
4617	do
4618	ln -f $file ${pathout[$i]}
4619	done
4620	cd $TEMPDIR
4621	fi
4622	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4623	if [[ ! -f "${pathout[$i]}/_0000" ]]
4624	then
4625	if [[ $link_local_output = true ]]
4626	then
4627	printf " ln failed for .../_0000, using cp...\n"
4628	fi
4629	cp -r ${localout[$i]} ${pathout[$i]}
4630	fi
4631
4632	fi
4633	fi
4634	done
4635	if (( i != 0 ))
4636	then
4637	if [[ $transfer_problems = true ]]
4638	then
4639	printf "\n$striche\n *** OUTPUT-files saved"
4640	printf "\n +++ WARNING: some data transfers failed! \n"
4641	else
4642	printf "\n$striche\n *** all OUTPUT-files saved \n"
4643	fi
4644	fi
4645
4646
4647	# EVENTUELL FOLGEJOB STARTEN
4648	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4649	if [[ -f CONTINUE_RUN ]]
4650	then
4651
4652	if [[ $archive_save = true ]]
4653	then
4654
4655	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4656	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4657	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4658	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4659	# HANDEN
4660	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4661	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4662	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4663	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4664	then
4665	mc=`echo $mc \| sed 's/#/f/g'`
4666	fi
4667
4668
4669	# JOB STARTEN
4670	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4671	echo " $mc"
4672	printf "\n$striche\n"
4673	if [[ $localhost != $fromhost ]]
4674	then
4675
4676	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibms ]]
4677	then
4678	echo "*** ssh will be used to initiate restart-runs!"
4679	echo " return_addres=\"$return_addres\" "
4680	echo " return_username=\"$return_username\" "
4681	if [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4682	then
4683	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export LD_LIBRARY_PATH=\$LD_LIBRARY_PATH:/muksoft/packages/intel/Compiler/11.1/073/lib/intel64/;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4684	else
4685	if [[ $localhost = ibmkisti ]]
4686	then
4687	ssh $usern@gaiad "ssh $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4688	else
4689	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4690	fi
4691	fi
4692	else
4693	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4694	locat=restart; exit
4695	fi
4696
4697	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4698	# DER AKTUELLE JOB ENDET
4699	if [[ $queue = special1q ]]
4700	then
4701	sleep 120
4702	else
4703	sleep 30
4704	fi
4705
4706	else
4707
4708	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4709	# RUFEN WERDEN, AUSSER AUF lcfimm
4710	cd $LOCAL_PWD
4711	if [[ $localhost = lcfimm ]]
4712	then
4713	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4714	else
4715	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4716	fi
4717	cd - > /dev/null
4718	fi
4719	printf "\n$striche\n *** restart-run initiated \n"
4720
4721
4722	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4723	# GEHOLT WORDEN SIND, LOESCHEN
4724	(( i = 0 ))
4725	while (( i < iin ))
4726	do
4727	(( i = i + 1 ))
4728	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4729	then
4730	rm -r $tmp_data_catalog/${frelin[$i]}
4731	fi
4732	done
4733
4734	else
4735
4736	printf "\n +++ no restart-run possible, since errors occured"
4737	printf "\n during the archive process"
4738	fi
4739
4740	fi
4741
4742
4743
4744	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4745	if [[ "$email_notification" != "none" ]]
4746	then
4747
4748	if [[ $localhost != $fromhost ]]
4749	then
4750	if [[ -f CONTINUE_RUN ]]
4751	then
4752	echo "PALM restart run necessary" > email_text
4753	echo "description header of actual run:" >> email_text
4754	cat CONTINUE_RUN >> email_text
4755	echo "mrun-command to restart:" >> email_text
4756	echo "$mc" >> email_text
4757	else
4758	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4759	fi
4760	mail $email_notification < email_text
4761	printf "\n *** email notification sent to \"$email_notification\" "
4762	fi
4763	fi
4764
4765
4766
4767	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4768	cd $HOME
4769	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4770
4771	else
4772
4773
4774	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4775	# CHENDE AKTIONEN DURCHGEFUEHRT
4776
4777	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4778	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
4779	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4780	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4781	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4782	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4783	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4784	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4785	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4786	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4787	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4788	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4789	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4790	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4791	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4792	if [[ $use_openmp = true ]]
4793	then
4794	mrun_com=${mrun_com}" -O $threads_per_task"
4795	fi
4796	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4797	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
4798	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4799	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4800	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4801	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4802	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4803	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4804	[[ "$max_par_io_str" != "" ]] && mrun_com=${mrun_com}" -w $max_par_io_str"
4805	if [[ $do_remote = true ]]
4806	then
4807	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4808	fi
4809
4810
4811	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4812	jobfile=jobfile.$RANDOM
4813
4814
4815	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4816	echo "mkdir $TEMPDIR" >> $jobfile
4817	echo "cd $TEMPDIR" >> $jobfile
4818
4819
4820	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4821	if [[ $do_trace = true ]]
4822	then
4823	echo "set -x" >> $jobfile
4824	else
4825	echo "set +vx" >> $jobfile
4826	fi
4827
4828
4829	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4830	# DATEI FUER DEN JOB
4831	if [[ $( echo $host \| cut -c1-5 ) = lcsgi \|\| $host = ibmkisti ]]
4832	then
4833
4834	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4835	# KOPIEREN
4836	if [[ $restart_run != true ]]
4837	then
4838	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4839	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4840	fi
4841
4842	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4843	# (BEI JOBS AUF LOKALEM RECHNER REICHT CP)
4844	echo "set -x" >> $jobfile
4845	if [[ $host = $localhost ]]
4846	then
4847	echo "cp -r $working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4848	else
4849	if [[ $host != ibmkisti ]]
4850	then
4851	echo "scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4852	else
4853	# on KISTI's IBM firewall is only opened on interactive node
4854	echo "localdir=\`pwd\`" >> $jobfile
4855	echo "ssh $remote_username@gaiad \"cd \$localdir; scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
4856	fi
4857	fi
4858	echo "export SOURCES_COMPLETE=true" >> $jobfile
4859
4860	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4861	# ARBEITSVERZEICHNIS VERSCHIEBEN
4862	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4863	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4864	echo "execute_mrun=true" >> $jobfile
4865	echo " " >> $jobfile
4866
4867	else
4868
4869	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4870	# SOWIE GEGEBENENFALLS DES MAKEFILES
4871	if [[ $do_compile = true ]]
4872	then
4873
4874	source_catalog=SOURCES_FOR_RUN_$fname
4875
4876	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4877	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4878	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4879	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4880	echo "export SOURCES_COMPLETE=true" >> $jobfile
4881	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4882
4883	for filename in $source_list
4884	do
4885	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4886	echo "cat > $filename << \"%END%\"" >> $jobfile
4887	cat $source_catalog/$filename >> $jobfile
4888	echo " " >> $jobfile
4889	echo "%END%" >> $jobfile
4890	echo " " >> $jobfile
4891	done
4892
4893	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4894	echo "cat > Makefile << \"%END%\"" >> $jobfile
4895	cat $source_catalog/Makefile >> $jobfile
4896	echo " " >> $jobfile
4897	echo "%END%" >> $jobfile
4898	echo " " >> $jobfile
4899
4900	echo "cd - > /dev/null" >> $jobfile
4901
4902	fi
4903
4904
4905	# ABSPEICHERN DER KONFIGURATIONSDATEI
4906	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4907	echo "cat > $config_file << \"%END%\"" >> $jobfile
4908	cat $config_file >> $jobfile
4909	echo "%END%" >> $jobfile
4910	echo " " >> $jobfile
4911
4912
4913	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
4914	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4915	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
4916	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
4917	echo "%END%" >> $jobfile
4918	echo "chmod u+x $mrun_script_name" >> $jobfile
4919	echo "execute_mrun=true" >> $jobfile
4920	echo " " >> $jobfile
4921
4922	fi
4923
4924
4925	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
4926	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
4927	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
4928	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
4929	if [[ $do_remote = true ]]
4930	then
4931	(( i = 0 ))
4932	while (( i < iin ))
4933	do
4934	(( i = i + 1 ))
4935	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
4936	if [[ "${transin[$i]}" = job ]]
4937	then
4938	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
4939	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
4940	echo " " >> $jobfile
4941	echo "%END%" >> $jobfile
4942	else
4943	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
4944	fi
4945
4946	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
4947	echo "if [[ \$? = 1 ]]" >> $jobfile
4948	echo "then" >> $jobfile
4949	echo " echo \" \" " >> $jobfile
4950	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
4951	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
4952	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
4953	echo " execute_mrun=false" >> $jobfile
4954	echo "fi" >> $jobfile
4955	done
4956	fi
4957
4958	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
4959	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
4960	echo "LOCAL_PWD=$working_directory" >> $jobfile
4961	echo "export LOCAL_PWD" >> $jobfile
4962
4963	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
4964	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
4965	echo "export LOCAL_MRUN_PATH" >> $jobfile
4966
4967	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
4968	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
4969	then
4970	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
4971	fi
4972
4973	# MRUN AUF ZIELRECHNER AUFRUFEN (queue is workaround for ibmkisti)
4974	echo "set -x" >> $jobfile
4975	echo "queue=$queue" >> $jobfile
4976	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
4977
4978	echo 'ls -al; echo `pwd`' >> $jobfile
4979	echo "cd \$HOME" >> $jobfile
4980	echo "rm -rf $TEMPDIR" >> $jobfile
4981
4982
4983
4984
4985	# JOB PER SUBJOB STARTEN
4986	if [[ $silent = false ]]
4987	then
4988	printf "\n "
4989	else
4990	printf "\n\n"
4991	fi
4992
4993	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $jobfile
4994	rm -rf $jobfile
4995
4996
4997	fi # ENDE REMOTE-TEIL
4998
4999
5000
5001	# ENDE DER PROZEDUR

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