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mrun @ 622

Last change on this file since 622 was 622, checked in by raasch, 14 years ago

New:
---

Optional barriers included in order to speed up collective operations
MPI_ALLTOALL and MPI_ALLREDUCE. This feature is controlled with new initial
parameter collective_wait. Default is .FALSE, but .TRUE. on SGI-type
systems. (advec_particles, advec_s_bc, buoyancy, check_for_restart,
cpu_statistics, data_output_2d, data_output_ptseries, flow_statistics,
global_min_max, inflow_turbulence, init_3d_model, init_particles, init_pegrid,
init_slope, parin, pres, poismg, set_particle_attributes, timestep,
read_var_list, user_statistics, write_compressed, write_var_list)

Adjustments for Kyushu Univ. (lcrte, ibmku). Concerning hybrid
(MPI/openMP) runs, the number of openMP threads per MPI tasks can now
be given as an argument to mrun-option -O. (mbuild, mrun, subjob)

Changed:

Initialization of the module command changed for SGI-ICE/lcsgi (mbuild, subjob)

Errors:

Property svn:keywords set to Id Rev

File size: 173.2 KB

Line
1	#!/bin/ksh
2	# mrun - script for running PALM jobs
3	# $Id: mrun 622 2010-12-10 08:08:13Z raasch $
4
5	# Procedure for interactive/batch PALM runs (initial runs and automatic
6	# restart runs)
7
8	# Last changes:
9	# 03/03/94 - Siggi - Entwicklungsbeginn
10	# 21/03/94 - Siggi - Entwicklungsabschluss (Version 1.0)
11	# 09/12/94 - Siggi - allexport unterbunden; statt dessen werden jetzt ein-
12	# zelne Variable exportiert. Dies ist noetig, weil an-
13	# sonsten irgendein Speicher ueberlaeuft und von mrun
14	# aufgerufene Programme (z.B. stageout) mit Fehlern
15	# abbrechen (too many arguments)
16	# 20/06/95 - Siggi - noclobber muss explizit abgeschaltet, da jetzt
17	# defaultmaessig im RRZN-Profile eingeschaltet
18	# 10/06/97 - Siggi - Zusaetzliche Option -C bei cpp, damit // nicht
19	# wegfallen
20	# 25/04/00 - Siggi - Version 1.5
21	# remote_addres und remote_user in return_addres bzw.
22	# return_username umbenannt, return_username wird dem
23	# mrun-Aufruf im Job ueber Option -U mitgegeben.
24	# Neue Variable remote_username, die beim interaktiven
25	# mrun-Aufruf zwingend ueber die neue Option -u oder
26	# in der Konfigurationsdatei angegeben werden muss.
27	# 08/02/01 - Siggi - Alle mrun-Meldungen ins englische uebersetzt,
28	# Version 1.7
29	# 05/05/02 - Siggi - Uebersetzungen mittels make-Mechanismus moeglich
30	# 21/11/02 - Siggi - ENV-Variable XLFRTEOPTS wird vor Ausfuehrung auf
31	# IBM gesetzt, um Record-Laenge der NAMELIST-Dateien,
32	# zu bestimmen; Praeprozessoroptionen haben nun alle
33	# die Form -Dtext=text, weil auf IBM sonst text durch
34	# die leere Zeichenkette ersetzt wird
35	# 01/08/03 - Siggi - Test of implementing dvrp+1PE on ibm
36	# 07/01/04 - Siggi - additional preprocessor directive for ibm included
37	# (-D$OMP=OMP) in order to avoid problems with
38	# OMP_NUM_THREADS
39	# 04/01/05 - Siggi - archiving on hanni and berni is done in separate
40	# tar files, one for each node used
41	# 07/01/04 - Siggi - old code for t3e, vpp and hpcs eliminated
42	# 09/01/05 - Siggi - workaround for getting the IP address on gfdl3
43	# 17/01/05 - Siggi - job for data transfer to local machine now within
44	# job class c1 (HLRN)
45	# 27/01/05 - Siggi - IP address workaround for gfdl3 removed
46	# 28/01/05 - Siggi - tar-filenames on $PERM (HLRN) now include the
47	# base filename and cycle number
48	# 16/02/05 - Gerald - hababai validated
49	# 14/03/05 - Siggi - abort on NEC after first runtime error (F_ERRCNT)
50	# 29/03/05 - Marcus - berni*-en0 validated
51	# 21/04/05 - Siggi - transfer-job-protocol for avs-data is no more stored
52	# 24/04/05 - Siggi - netcdf support on lcmuk
53	# 25/04/05 - Siggi - netcdf support on gfld3 (decalpha)
54	# 11/05/05 - Siggi - files with non-numeric extensions (.xxx after cycle
55	# number) can now be used within interactive runs
56	# 12/05/05 - Siggi - netcdf support on ibm
57	# 13/05/05 - Siggi - error in tar-filenames on $PERM (HLRN) removed
58	# 18/05/05 - Siggi - netcdf support on nec
59	# 24/05/05 - Siggi - netcdf support on ibms
60	# 14/06/05 - Siggi - sleep interval after submit of restart job increased
61	# to 30 seconds
62	# 28/06/05 - Siggi - bora adjusted to new intel compiler (LD_LIBRARY_
63	# PATH is temporarily set)
64	# 07/09/05 - Siggi - setting of MP_EAGER_LIMIT switched off because it
65	# caused warnings in the job protocol
66	# 20/10/05 - Siggi - update of netcdf-version on decalpha (gfdl3)
67	# 25/10/05 - Siggi - error in listing files for getting the cycle number
68	# removed
69	# 26/10/05 - Siggi - new paths for dvrp-library, transfer of catalogs
70	# realized by file attribute trpe
71	# 28/10/05 - Siggi - if existing, the file extension is output in case
72	# of missing input file - no job abort in case of
73	# missing input files with file extensions
74	# (preliminary solution)
75	# 31/10/05 - Siggi - data transfer from nech now within seperate job
76	# 04/11/05 - Siggi - netcdf 3.6.0-p1 on ibmh/ibmb
77	# 07/12/05 - Siggi - gallego and elephanta admitted
78	# 30/12/05 - Siggi - gfdl5 (ibmy) admitted
79	# 10/01/06 - Siggi - cpp directive for NetCDF 64bit support
80	# 20/01/06 - Siggi - cpp directive for ibmy
81	# 09/02/06 - Siggi - ibmy admitted for batch mode
82	# 13/04/06 - Siggi - ostria admitted
83	# 18/04/06 - Siggi - usage of OpenMP implemented (additional option -O)
84	# 10/05/06 - Siggi - environment variable XLSMPOPTS set on IBM for
85	# optimization of OpenMP runs (option stacksize is
86	# necessary for large gridpoint numbers because
87	# otherwise a segmentation fault occurs)
88	# 23/05/05 - Siggi - lctit (SUN Fire X4600) admitted
89	# 21/08/06 - Siggi - standard mrun path on scirocco is as on bora
90	# 23/08/06 - Siggi - netcdf support for scirocco (notebook)
91	# 20/09/06 - Marcus - add DVRP library on nech
92	# 24/10/06 - Siggi - Environment variables for PALM steering are written
93	# on local NAMELIST file ENVPAR
94	# 24/11/06 - Siggi - levanto admitted, maestro switched to ifc 9.1
95	# 28/11/06 - Siggi - call to interpret_config.x_levanto because of SuSe 10
96	# 06/02/07 - Siggi - add DVRP library on lcmuk
97	# 07/02/07 - Siggi - revision of source code handling, source code is
98	# now expected in directory given by source_path and
99	# not in the current working directory, source code
100	# files provided in add_source_path are allways
101	# compiled, source code to be compiled is allways
102	# sampled in SOURCES_FOR_RUN_$fname which is a
103	# subdirectory of the current working directory,
104	# -s TEST changed to -s WRITE_PERMIT or -s WP,
105	# adapted for RIAM (neck)
106	# bugfix for cycle number of output file (extout)
107	# all hpmuk-related code removed
108	# 14/02/07 - Siggi - dvrp support for neck added
109	# 28/02/07 - Siggi - empty lines in configuration file are accepted
110	# mrun_path replaced by PALM_BIN,
111	# all machines are calling interpret_config.x
112	# 14/03/07 - Siggi - fimm admitted, revision number added to terminal
113	# output
114	# 16/03/07 - Siggi - adjustments for lctit
115	# 29/03/07 - Siggi - global revision transfered to batch job by new
116	# option -G
117	# 30/03/07 - Siggi - compilation "by hand" removed, cpp-directives/options
118	# + netcdf/dvrp-options are read from configuration
119	# file, host identifier (local_host) is read from
120	# config file, code related to ftp filetransfer
121	# removed (incl. option -f)
122	# 19/06/07 - Siggi - time limit for cdata jobs increased
123	# 25/07/07 - Siggi - two sets of executables can be started on lcmuk,
124	# if new option -Y (coupling) is given,
125	# output of executables to aout_output removed,
126	# messages are immediately written to stdout instead
127	# 03/08/07 - Marcus - add XOPT="-X $numprocs" for lcfimm
128	# 09/08/07 - Marcus - workaround on lcfimm to propagate environment
129	# variables out to the nodes in coupled mode -disabled-
130	# 13/08/07 - Marcus - start local restart jobs per ssh on lcfimm
131	# 28/08/07 - Marcus - completely remove workaround on lcfimm to propagate
132	# environment variables out to the nodes in coupled mode
133	# 15/10/07 - Siggi - Preliminary adjustments for lctit, based on Jin's
134	# suggestions
135	# 19/10/07 - Marcus - further adjustments for lctit: add new optional
136	# argument -g group_number, admit all sla* node_usage
137	# queues
138	# 30/10/07 - Marcus - further adjustments for queues on lctit
139	# 14/02/08 - Bjoern - link of restart files with long file name possible
140	# 28/02/08 - Marcus - If environment variable link_local_output is set to
141	# true, mrun tries "ln -f" on local output and resorts
142	# to "cp" or "cp -r" on error
143	# 15/04/08 - Siggi - argument -c introduced to most of the subjob calls,
144	# which allows the user to choose his own job catalog
145	# by setting job_catalog in the configuration file
146	# (default is ~/job_queue),
147	# workaround for mpiexec with -env option,
148	# adjustments for lcxt4 (Bergen Center for Computational
149	# Science)
150	# 22/05/08 - Marcus - If environment variable link_local_input is set to
151	# true, mrun tries "ln -f" on local input and resorts
152	# to "cp" or "cp -r" on error
153	# 27/05/08 - Siggi - PATH is set to PALM_BIN everywhere (missing so far)
154	# 14/07/08 - Siggi - adjustments for lcsgih
155	# 08/08/08 - Marcus - typo removed in lcxt4 branch
156	# 17/09/08 - Siggi - restart mechanism adjusted for lcsgi
157	# 02/10/08 - BjornM - argument "-Y" modified, adjustments for coupled runs
158	# 21/10/08 - Siggi - bugfix for the case that -K has more than one
159	# argument
160	# 08/11/08 - Siggi - bugfix for depository path settings in configuration
161	# file
162	# 11/11/08 - Siggi - rules for using user code files changed: user
163	# code splitted into one file per subroutine,
164	# user can provide his/her own makefile, only
165	# default source-code filenames are allowed
166	# 14/11/08 - Siggi - cond1 and cond2 are part of the depository name
167	# 08/01/09 - Siggi - mpi module on sgi machines to be used can be set
168	# with environment variable mpilib
169	# 13/01/09 - Siggi - totalview on hice/bice can be used in debug mode
170	# using environment variable totalview
171	# 25/02/09 - Siggi - cputime-option (-t) is allowed to be omitted for
172	# interactive runs
173	# 05/03/09 - Siggi - adjustments for new NEC-SX9 at RIAM (necriam)
174	# 16/03/09 - Siggi - dvrp_lib, dvrp_inc replaced by dvr_lib, dvr_inc,
175	# dvr streaming server is automatically started using
176	# new variable dvr_server and a configuration file
177	# .dvrserver.config,
178	# processing of dvr output files using new script
179	# process_dvr_output implemented, in order to make
180	# dvr application more user friendly
181	# 20/03/09 - Marcus - update of n1ge command for lctit
182	# 16/04/09 - Siggi - new option -y for precursor (uncoupled) ocean runs
183	# to be followed by a coupled atmosphere-ocean run
184	# 21/04/09 - Siggi - adjustments for new IBM at DKRZ, which is now ibmh
185	# 24/06/09 - BjornM - adjustments for coupled/precursor runs on ibmy
186	# 08/07/09 - Siggi - default value for email_notification is none,
187	# option -e added to subjob
188	# 19/08/09 - Marcus - MPI debug option
189	# 21/08/09 - Marcus - totalview on hice/bice also available for mvapich2
190	# 25/08/09 - BjornM - adpated for lck
191	# 26/08/09 - Siggi - additional environment variables for mpt on ice2
192	# 26/08/09 - Marcus - adjustment for ice2 on lcsgib
193	# 29/09/09 - Siggi - default value for archiving is false, option "-A"
194	# switches on archiving, archiving on SGI-ICE enabled
195	# 16/10/09 - Carolin- adjustments for archiving on SGI-ICE of binary files;
196	# adjustment for special1q
197	# 18/12/09 - Carolin- modification of archiving (permq)
198	# 01/02/10 - Siggi - adapted for lcxt5m and lckyoto (Fujitsu HX600)
199	# 03/02/10 - Siggi - make options (mopts) to be set by configuration file
200	# implemented
201	# 08/02/10 - Siggi - loading of modules now controlled via configuration
202	# file (modules)
203	# 02/03/10 - Siggi - for each block in the configuration file, separate
204	# utility programs are used, combine_plot_fields is
205	# directly called and must not be given by an output
206	# command in the configuration file any more
207	# 15/06/10 - Rieke - ssh from compute nodes to login nodes on hosts
208	# lcsgih/lcsgib is done using the names
209	# hicegate0/bicegate0 instead of the IP addresses
210	# 17/08/10 - BjornM - adjustments for interactive runs on lcxt4
211	# 07/09/10 - Siggi - bugfix for wrong netcdf/3.6.3 module on lcsgi
212	# 08/12/10 - Siggi - new handling of openmp/hybrid runs, option -O
213	# has now argument threads_per_task
214	# adjustments for Kyushu Univ. (lcrte, ibmku)
215
216
217
218	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
219
220	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
221	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
222	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
223
224	AddFilenames=""
225	additional_conditions=""
226	add_source_path=""
227	afname=""
228	archive_save=true
229	archive_system=none
230	compiler_name=""
231	cond1=""
232	cond2=""
233	config_file=.mrun.config
234	coupled_dist=""
235	coupled_mode="mpi1"
236	cpp_opts=""
237	cpp_options=""
238	cpumax=0
239	cpurest=0
240	delete_temporary_catalog=true
241	do_batch=false
242	do_compile=true
243	do_remote=false
244	do_stagein=true
245	do_stageout=true
246	do_trace=false
247	email_notification="none"
248	exclude=""
249	executable=""
250	execution_error=false
251	fimm=false
252	fname=test
253	fromhost=""
254	global_revision=""
255	group_number=none
256	host=""
257	host_file=""
258	hp=""
259	ignore_archive_error=false
260	input_list=""
261	interpreted_config_file=""
262	job_catalog="~/job_queue"
263	job_on_file=""
264	keep_data_from_previous_run=false
265	link_local_input=false
266	link_local_output=false
267	localhost_realname=$(hostname)
268	local_compile=false
269	local_dvrserver_running=.FALSE.
270	locat=normal
271	mainprog=""
272	makefile=""
273	mc=$0
274	while [[ $(echo $mc \| grep -c "/") != 0 ]]
275	do
276	mc=`echo $mc \| cut -f2- -d"/"`
277	done
278	module_calls=""
279	mrun_script_name=$mc
280	netcdf_inc=""
281	netcdf_lib=""
282	netcdf_support=false
283	node_usage=default
284	numprocs=""
285	numprocs_atmos=0
286	numprocs_ocean=0
287	OOPT=""
288	openmp=false
289	output_list=""
290	package_list=""
291	punkte="..........................................................."
292	queue=none
293	read_from_config=""
294	restart_run=false
295	if [[ `hostname` = rte10 ]]
296	then
297	return_addres=133.5.185.60
298	echo "+++ WARNING: return_addres changed to $return_addres !!!!!"
299	else
300	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
301	fi
302	return_password=""
303	return_username=$LOGNAME
304	remotecall=false
305	remote_username=""
306	run_coupled_model=false
307	run_mode=""
308	scirocco=false
309	store_on_archive_system=false
310	striche=" ----------------------------------------------------------------------------"
311	silent=false
312	source_list=""
313	source_path=SOURCE
314	tasks_per_node=""
315	threads_per_task=1
316	tmpcreate=false
317	tmp_data_catalog=""
318	transfer_problems=false
319	usern=$LOGNAME
320	use_openmp=false
321	working_directory=`pwd`
322	TOPT=""
323	XOPT=""
324	zeit=$( date \| cut -c 12-19 )
325
326	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
327	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
328
329	typeset -R30 calltime
330	typeset -L20 spalte1
331	typeset -L40 spalte2
332	typeset -L60 spalte3
333	typeset -L35 string1=`date`
334	typeset -L12 string2=$usern
335	typeset -L12 string3=$localhost_realname
336	typeset -L12 string4
337	typeset -L12 string5
338	typeset -L30 version="MRUN 2.0 Rev$Rev: 622 $"
339
340
341
342	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
343	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
344
345	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
346	# EXPORTIERT WERDEN
347	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
348	export group_number input_list memory numprocs output_list queue run_mode
349
350
351
352	# FEHLERBEHANDLUNG
353	# BEI EXIT:
354	trap 'rm -rf $working_directory/tmp_mrun
355	if [[ $locat != localhost ]]
356	then
357	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
358	# then
359	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
360	#MRUN-calls on $localhost
361	#
362	#date and time user localhost remotehost termination mrun-command
363	#--------------------------------------------------------------------------------------------------------------------
364	#%STATEND%
365	# chmod 666 ${mrun_path}/statistik/mrun_statistik
366	# fi
367	#
368	# # EINTRAG IN DIE STATISTIK-DATEI
369	# string4=$host
370	# string5=$locat
371	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
372	# then
373	# if [[ $do_batch = true ]]
374	# then
375	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
376	# else
377	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
378	# fi
379	# fi
380	echo " " > /dev/null
381	fi
382
383	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
384	then
385
386	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
387	(( i = 0 ))
388	while (( i < iec ))
389	do
390	(( i = i + 1 ))
391	printf "\n *** Execution of ERROR-command:\n"
392	printf " >>> ${err_command[$i]}\n"
393	eval ${err_command[$i]}
394	done
395	if [[ -n $interpreted_config_file ]] then
396	rm -rf $interpreted_config_file
397	fi
398	if [[ -n .mrun_environment ]] then
399	rm -rf .mrun_environment
400	fi
401	if [[ $tmpcreate = true ]]
402	then
403	printf "\n *** Contents of \"$TEMPDIR\":\n"
404	ls -al; cd
405	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
406	fi
407	if [[ "$dvrserver_id" != "" ]]
408	then
409	echo "+++ killing dvrserver_id=$dvrserver_id"
410	kill $dvrserver_id
411	fi
412	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
413	then
414	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
415	fi
416	printf "\n\n+++ MRUN killed \n\n"
417	elif [[ $locat != control_c ]]
418	then
419	printf "\n\n --> all actions finished\n\n"
420	printf " Bye, bye $usern !!\n\n"
421	fi' exit
422
423
424	# BEI TERMINAL-BREAK:
425	trap 'rm -rf $working_directory/tmp_mrun
426	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
427	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
428	then
429	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
430	fi
431	if [[ "$dvrserver_id" != "" ]]
432	then
433	echo "+++ killing dvrserver_id=$dvrserver_id"
434	kill $dvrserver_id
435	fi
436	printf "\n+++ MRUN killed by \"^C\" \n\n"
437	locat=control_c
438	exit
439	' 2
440
441
442	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
443	# BEEN SET
444	if [[ "$PALM_BIN" = "" ]]
445	then
446	printf "\n +++ environment variable PALM_BIN has not been set"
447	printf "\n please set it to the directory where the PALM scripts are located"
448	locat=palm_bin; exit
449	fi
450	export PATH=$PALM_BIN:$PATH
451
452
453
454	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
455	# FUER FOLGEJOBS BENOETIGT WIRD
456	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vxX:yY: option
457	do
458	case $option in
459	(a) afname=$OPTARG;;
460	(A) store_on_archive_system=true; mc="$mc -A";;
461	(b) do_batch=true; mc="$mc -b";;
462	(B) delete_temporary_catalog=false; mc="$mc -B";;
463	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
464	(C) restart_run=true; mc="$mc -C";;
465	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
466	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
467	(F) job_on_file="-D"; mc="$mc -F";;
468	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
469	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
470	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
471	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
472	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
473	(I) ignore_archive_error=true; mc="$mc -I";;
474	(k) keep_data_from_previous_run=true; mc="$mc -k";;
475	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
476	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
477	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
478	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
479	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
480	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
481	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
482	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
483	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
484	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
485	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
486	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
487	(S) read_from_config=false; mc="$mc -S";;
488	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
489	(T) tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
490	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
491	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
492	(v) silent=true; mc="$mc -v";;
493	(x) do_trace=true;set -x; mc="$mc -x";;
494	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
495	(y) ocean_file_appendix=true; mc="$mc -y";;
496	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
497	(\?) printf "\n +++ unknown option $OPTARG \n"
498	printf "\n --> type \"$0 ?\" for available options \n"
499	locat=parameter;exit;;
500	esac
501	done
502
503
504	# EVTL. POSITIONSPARAMETER EINLESEN
505	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
506	shift OPTIND-1
507
508
509	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
510	if [[ "$1" = "?" ]]
511	then
512	(printf "\n *** mrun can be called as follows:\n"
513	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. <modus>\n"
514	printf "\n Description of available options:\n"
515	printf "\n Option Description Default-Value"
516	printf "\n -a base name of input files equiv. -d"
517	printf "\n -A archiving when using file-attribute fl"
518	printf "\n -b batch-job on local machine ---"
519	printf "\n -B do not delete temporary directory at end ---"
520	printf "\n -c configuration file .mrun.config"
521	printf "\n -d base name of files attached to program test"
522	printf "\n -D preprocessor(cpp)-directives \"\" "
523	printf "\n -F create remote job file only ---"
524	printf "\n -h execution host $localhost_realname"
525	printf "\n -i INPUT control list \"\" "
526	printf "\n -I archiving errors of previous batch-jobs"
527	printf "\n will be ignored"
528	printf "\n -k keep data from previous run"
529	printf "\n -K additional conditions for controling"
530	printf "\n usage of conditional code and"
531	printf "\n env-variables in configuration file \"\" "
532	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
533	printf "\n -M Makefile name Makefile"
534	printf "\n -n node usage (shared/not_shared) depending on -h"
535	printf "\n -o OUTPUT control list \"\" "
536	printf "\n -O use OpenMP ---"
537	printf "\n -p software package list \"\" "
538	printf "\n -q queue \"$queue\" "
539	printf "\n -r run control list (combines -i -o) \"\" "
540	printf "\n -s filenames of routines to be compiled \"\" "
541	printf "\n must end with .f, .f90, .F, or .c !"
542	printf "\n use \"..\" for more than one file and wildcards"
543	printf "\n -s TEST compiles all files with w-permit"
544	printf "\n -S config file interpreted by shellscript ---"
545	printf "\n -t allowed cpu-time in seconds (batch) 0"
546	printf "\n -T tasks per node depending on -h"
547	printf "\n -u username on remote machine \"\" "
548	printf "\n -v no prompt for confirmation ---"
549	printf "\n -x tracing of mrun for debug purposes ---"
550	printf "\n -X # of processors (on parallel machines) 1"
551	printf "\n -y add appendix \"_O\" to all local output"
552	printf "\n files (ocean precursor runs followed by"
553	printf "\n coupled atmosphere-ocean runs) ---"
554	printf "\n -Y run coupled model, \"#1 #2\" with"
555	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
556	printf "\n "
557	printf "\n Possible values of positional parameter <modus>:"
558	printf "\n \"?\" - this outline \n\n") \| more
559	exit
560	elif [[ "$1" != "" ]]
561	then
562	printf "\n +++ positional parameter $1 unknown \n"
563	locat=parameter; exit
564	fi
565
566
567
568	# KURZE STARTMELDUNG
569	printf "\n*** $version "
570	printf "\n will be executed. Please wait ..."
571
572
573
574	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
575	if [[ ! -f $config_file ]]
576	then
577	printf "\n\n +++ configuration file: "
578	printf "\n $config_file"
579	printf "\n does not exist"
580	locat=connect; exit
581	fi
582
583
584	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
585	line=""
586	grep "%host_identifier" $config_file > tmp_mrun
587	while read line
588	do
589	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
590	then
591	HOSTNAME=`echo $line \| cut -d" " -s -f2`
592	host_identifier=`echo $line \| cut -d" " -s -f3`
593	if [[ $localhost_realname = $HOSTNAME ]]
594	then
595	localhost=$host_identifier
596	break
597	fi
598	fi
599	done < tmp_mrun
600
601	if [[ "$localhost" = "" ]]
602	then
603	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
604	printf "\n for local host \"$localhost_realname\"."
605	printf "\n Please add line"
606	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
607	printf "\n to the configuration file."
608	locat=localhost; exit
609	fi
610
611
612	# HOSTSPEZIFISCHE VARIABLEN SETZEN
613	case $localhost_realname in
614	(r1\|r2\|h01\|b01) archive_system=tivoli;;
615	(cs*) archive_system=ut;;
616	(fimm.bccs.uib.no) fimm=true;;
617	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
618	(scirocco) scirocco=true;;
619	esac
620
621
622
623	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
624	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
625	[[ "$afname" = "" ]] && afname=$fname
626
627
628	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
629	if [[ "$run_mode" != "" ]]
630	then
631	input_list="$input_list $run_mode"
632	output_list="$output_list $run_mode"
633	fi
634
635
636	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
637	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
638	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
639	# STARTET)
640	if [[ "$fromhost" = "" ]]
641	then
642	fromhost=$localhost
643	fi
644
645
646	# PRUEFEN, OB MRUN NUR TESTWEISE AUF DER LOKALEN MASCHINE KOMPILIEREN SOLL
647	if [[ "$source_list" = LOCAL_COMPILE_TEST ]]
648	then
649	source_list=TEST
650	local_compile=true
651	host=$localhost
652	fi
653
654
655	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
656	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
657	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
658	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
659	if [[ -n $host && "$host" != $localhost ]]
660	then
661	do_batch=true
662	do_remote=true
663	case $host in
664	(ibm\|ibmh\|ibmku\|ibms\|ibmy\|nech\|necriam\|lckyoto\|lcsgib\|lcsgih\|lctit\|unics\|lcxt4\|lcxt5m\|lck) true;;
665	(*) printf "\n"
666	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
667	printf "\n is not available"
668	locat=nqs; (( iec = 0 )); exit;;
669	esac
670	else
671	host=$localhost
672	fi
673
674
675	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
676	if [[ -n $additional_conditions ]]
677	then
678	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
679	cond1=`echo $additional_conditions \| cut -d" " -f1`
680	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
681	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
682	if [[ -n $dummy ]]
683	then
684	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
685	locat=options; exit
686	fi
687	block=_$cond1
688	[[ -n $cond2 ]] && block=${block}_$cond2
689	fi
690
691
692	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
693	if [[ $run_coupled_model = true ]]
694	then
695
696	if [[ -n $coupled_dist ]]
697	then
698
699	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
700	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
701
702	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
703	then
704
705	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
706	printf "\n PEs (total) : $numprocs"
707	printf "\n PEs (atmosphere): $numprocs_atmos"
708	printf "\n PEs (ocean) : $numprocs_ocean"
709	locat=coupling; exit
710
711	# REARRANGING BECAUSE CURRENTLY ONLY 1:1 TOPOLOGIES ARE SUPPORTED
712	# THIS SHOULD BE REMOVED IN FUTURE
713	elif (( $numprocs_ocean != $numprocs_atmos ))
714	then
715
716	printf "\n +++ currently only 1:1 topologies are supported"
717	printf "\n PEs (total) : $numprocs"
718	printf "\n PEs (atmosphere): $numprocs_atmos"
719	printf "\n PEs (ocean) : $numprocs_ocean"
720	(( numprocs_atmos = $numprocs / 2 ))
721	(( numprocs_ocean = $numprocs / 2 ))
722	printf "\n +++ rearranged topology to $numprocs_atmos:$numprocs_ocean"
723
724	fi
725
726	else
727
728	(( numprocs_ocean = $numprocs / 2 ))
729	(( numprocs_atmos = $numprocs / 2 ))
730
731	fi
732	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
733
734	# GET coupled_mode FROM THE CONFIG FILE
735	line=""
736	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
737	while read line
738	do
739	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && ( $(echo $line \| cut -d" " -s -f4) = $cond1 \|\| $(echo $line \| cut -d" " -s -f4) = $cond2 ) ]]
740	then
741	coupled_mode="mpi2"
742	fi
743	done < tmp_mrun
744
745	fi
746
747
748	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
749	# ARCHIVIERUNG FEHLGESCHLAGEN IST
750	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
751	then
752	if [[ $ignore_archive_error = false ]]
753	then
754	printf "\n +++ data archiving of previous run failed"
755	printf "\n see directory \~/job_queue on remote machine"
756	locat=archive; exit
757	else
758	printf "\n +++ warning: data archiving in a previous run failed"
759	printf "\n MRUN continues, trying to get backup copy"
760	fi
761	fi
762
763
764
765	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
766	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
767	if [[ "$read_from_config" = false ]]
768	then
769
770	[[ $silent = false ]] && printf "\n Reading the configuration file... "
771	while read zeile
772	do
773	[[ $silent = false ]] && printf "."
774
775
776	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
777	# ERSETZEN
778	eval zeile=\"$zeile\"
779
780
781	# INTERPRETATION DER ZEILE
782	if [[ "$(echo $zeile)" = "" ]]
783	then
784	# LEERZEILE, KEINE AKTION
785	continue
786
787	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
788	then
789
790	# ZEILE IST KOMMENTARZEILE
791	true
792
793	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
794	then
795
796	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
797	zeile=$(echo $zeile \| cut -c2-)
798	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
799	var=`echo $zeile \| cut -d" " -f1`
800	value=`echo $zeile \| cut -d" " -s -f2`
801	for_host=`echo $zeile \| cut -d" " -s -f3`
802	for_cond1=`echo $zeile \| cut -d" " -s -f4`
803	for_cond2=`echo $zeile \| cut -d" " -s -f5`
804
805	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
806	then
807
808	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
809	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
810	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
811
812
813	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
814	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
815	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
816	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
817	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
818	# KONFIGURATIONSDATEI
819	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
820	then
821	eval $var=\$value
822
823	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
824	if [[ $do_trace = true ]]
825	then
826	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
827	fi
828	fi
829
830	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
831	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
832	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
833	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
834	if [[ $var = host ]]
835	then
836	if [[ -n $host && "$host" != $localhost ]]
837	then
838	do_batch=true
839	do_remote=true
840	case $host in
841	(ibm\|ibmh\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|lctit\|nech\|necriam\|unics\|lcxt4\|lcxt5m\|lck) true;;
842	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
843	printf "\n is not available"
844	locat=nqs; exit;;
845	esac
846	else
847	host=$localhost
848	fi
849	fi
850
851	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
852	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
853	# DEN PROGRAMMEN BENOETIGT WERDEN
854	export $var
855	fi
856
857
858
859
860	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
861	then
862
863	# ZEILE DEFINIERT ERROR-KOMMANDO
864	(( iec = iec + 1 ))
865	zeile=$(echo $zeile \| cut -c4-)
866	err_command[$iec]="$zeile"
867
868	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
869	then
870
871	# ZEILE DEFINIERT INPUT-KOMMANDO
872	(( iic = iic + 1 ))
873	zeile=$(echo $zeile \| cut -c4-)
874	in_command[$iic]="$zeile"
875
876	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
877	then
878
879	# ZEILE DEFINIERT OUTPUT-KOMMANDO
880	(( ioc = ioc + 1 ))
881	zeile=$(echo $zeile \| cut -c4-)
882	out_command[$ioc]="$zeile"
883
884	else
885
886	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
887	# s2a: in/out - Feld
888	# s2b: loc - Feld (optional)
889	# s2c: tr/ar - Feld (optional)
890	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
891	s1=`echo $zeile \| cut -d" " -f1`
892	s2=`echo $zeile \| cut -d" " -s -f2`
893	s2a=$(echo $s2 \| cut -d":" -f1)
894	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
895	then
896	s2b=""
897	s2c=""
898	else
899	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
900	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
901	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
902	fi
903	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
904	s3=`echo $zeile \| cut -d" " -f3`
905	s4=`echo $zeile \| cut -d" " -s -f4`
906	s5=`echo $zeile \| cut -d" " -s -f5`
907	s6=`echo $zeile \| cut -d" " -s -f6`
908
909
910	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
911	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
912	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
913	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
914	# HANDEN SEIN MUSS (D.H. s2b = loc)
915	IFSALT="$IFS"; IFS="$IFS:"
916	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
917	then
918	found=false
919	for actual in $input_list
920	do
921	for formal in $s3
922	do
923	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
924	done
925	done
926	if [[ $found = true ]]
927	then
928	(( iin = iin + 1 ))
929	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
930	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
931	extin[$iin]=$s6
932	fi
933	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
934	then
935	found=false
936	for actual in $output_list
937	do
938	for formal in $s3
939	do
940	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
941	done
942	done
943	if [[ $found = true ]]
944	then
945	(( iout = iout + 1 ))
946	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
947	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
948	fi
949	elif [[ "$s2a" != in && "$s2a" != out ]]
950	then
951	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
952	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
953	locat=connect; exit
954	fi
955	IFS="$IFSALT"
956	fi
957	done < $config_file
958
959	else
960
961
962	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
963	[[ $silent = false ]] && printf "..."
964	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
965	export interpreted_config_file=.icf.$RANDOM
966
967
968
969	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
970	# VERFUEGUNG STELLEN
971	cat > .mrun_environment << %%END%%
972	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
973	config_file = '$config_file', do_remote = '$do_remote',
974	do_trace = '$do_trace', host = '$host',
975	input_list = '$input_list', icf = '$interpreted_config_file',
976	localhost = '$localhost', output_list = '$output_list' /
977
978	%%END%%
979
980	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
981	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
982	mrun_memory=$memory
983	mrun_group_number=$group_number
984	mrun_cpumax=$cpumax
985	mrun_numprocs=$numprocs
986
987	if [[ $localhost_realname = "sx-fep" ]]
988	then
989	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
990	else
991
992	if [[ "$host" != $localhost ]]
993	then
994
995	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
996	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
997	if [[ $? != 0 ]]
998	then
999	printf "\n\n +++ no interpret_config found"
1000	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
1001	locat=interpret_config; exit
1002	fi
1003	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
1004	$interpret_config_executable
1005
1006	else
1007
1008	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
1009	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
1010	then
1011	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
1012	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
1013	locat=interpret_config; exit
1014	else
1015	interpret_config${block}.x
1016	fi
1017
1018	fi
1019	fi
1020	rm .mrun_environment
1021
1022
1023	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
1024	chmod u+x $interpreted_config_file
1025	export PATH=$PATH:.
1026	. $interpreted_config_file
1027	rm $interpreted_config_file
1028
1029
1030	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
1031	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
1032	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
1033	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
1034	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
1035
1036	fi
1037
1038
1039	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
1040	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
1041	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
1042	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
1043	if [[ "$SOURCES_COMPLETE" = "" ]]
1044	then
1045
1046	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
1047	# VEREINBART WURDE
1048	source_path=""
1049	line=""
1050	grep "%source_path" $config_file > tmp_mrun
1051	while read line
1052	do
1053	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1054	then
1055	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
1056	then
1057	global_source_path=`echo $line \| cut -d" " -f2`
1058	fi
1059	fi
1060	done < tmp_mrun
1061
1062	line=""
1063	found=false
1064	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
1065	while read line
1066	do
1067	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1068	then
1069	if [[ $found = true ]]
1070	then
1071	printf "\n\n +++ more than one source path found in configuration file"
1072	printf "\n for local host \"$localhost\" "
1073	locat=source_path; exit
1074	fi
1075	source_path=`echo $line \| cut -d" " -f2`
1076	found=true
1077	fi
1078	done < tmp_mrun
1079	rm tmp_mrun
1080
1081	if [[ "$source_path" = "" ]]
1082	then
1083	if [[ "$global_source_path" != "" ]]
1084	then
1085	source_path=$global_source_path
1086	else
1087	printf "\n\n +++ no source path found in configuration file"
1088	printf "\n for local host \"$localhost\" "
1089	locat=source_path; exit
1090	fi
1091	fi
1092	eval source_path=$source_path
1093
1094	if [[ ! -d $source_path ]]
1095	then
1096	printf "\n\n +++ source path \"$source_path\" on local host"
1097	printf "\n \"$localhost\" does not exist"
1098	locat=source_path; exit
1099	fi
1100
1101	fi
1102
1103
1104	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
1105	# DURCH OPTION -G MITGETEILT)
1106	if [[ "$global_revision" = "" ]]
1107	then
1108	global_revision=`svnversion $source_path 2>/dev/null`
1109	global_revision="Rev: $global_revision"
1110	fi
1111
1112
1113	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
1114	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
1115	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
1116	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
1117	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
1118	if [[ -n $host && "$host" != $localhost ]]
1119	then
1120	do_batch=true
1121	do_remote=true
1122	case $host in
1123	(ibm\|ibmh\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|lctit\|nech\|necriam\|unics\|lcxt4\|lcxt5m\|lck) true;;
1124	(*) printf "\n"
1125	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
1126	printf "\n is not available"
1127	locat=nqs; (( iec = 0 )); exit;;
1128	esac
1129	else
1130	host=$localhost
1131	fi
1132
1133
1134	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
1135	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1136	then
1137
1138	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
1139	if [[ ! -n $numprocs ]]
1140	then
1141	printf "\n"
1142	printf "\n +++ option \"-K parallel\" requires additional specification"
1143	printf "\n of the number of processors to be used by"
1144	printf "\n mrun-option \"-X\" or by environment-variable"
1145	printf "\n \"numprocs\" in the configuration file"
1146	locat=numprocs; (( iec = 0 )); exit
1147	fi
1148
1149	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
1150	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
1151	# GESAMTPROZESSORANZAHL IST
1152	if [[ $host = nech \|\| $host = necriam \|\| $host = ibmh \|\| $host = ibms ]]
1153	then
1154	[[ "$tasks_per_node" = "" ]] && tasks_per_node=6
1155	(( ival = $tasks_per_node ))
1156	(( pes = numprocs ))
1157	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1158	# then
1159	# (( pes = pes - 1 ))
1160	# fi
1161	(( ii = pes / ival ))
1162	if (( pes - ii * ival > 0 ))
1163	then
1164	printf "\n"
1165	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1166	printf "\n divisor of the total number of processors (option \"-X\")"
1167	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1168	locat=tasks_per_node; (( iec = 0 )); exit
1169	fi
1170	fi
1171
1172	# IBMY HAT NUR EINEN KNOTEN
1173	if [[ $host = ibmy ]]
1174	then
1175	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1176	then
1177	printf "\n"
1178	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1179	printf "\n total number of processors (option \"-X\")"
1180	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1181	locat=tasks_per_node; (( iec = 0 )); exit
1182	fi
1183	fi
1184
1185	# FALLS OPENMP PARALLELISIERUNG VERWENDET WERDEN SOLL, ANZAHL VON THREADS
1186	# SETZEN UND ZAHL DER TASKS PRO KNOTEN AUF 1 SETZEN
1187	# if [[ $use_openmp = true ]]
1188	# then
1189	# threads_per_task=$tasks_per_node
1190	# tasks_per_node=1
1191	# fi
1192
1193	# SETTINGS FOR SUBJOB-COMMAND
1194	TOPT="-T $tasks_per_node"
1195	OOPT="-O $threads_per_task"
1196
1197	# GESAMTZAHL DER KNOTEN BESTIMMEN
1198	if [[ "$tasks_per_node" != "" ]]
1199	then
1200	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1201	fi
1202
1203	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1204	# SETZEN
1205	if [[ $node_usage = default ]]
1206	then
1207	if [[ $host = ibms ]]
1208	then
1209	node_usage=shared
1210	elif [[ $host = lctit ]]
1211	then
1212	node_usage=RAM64GB
1213	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1214	then
1215	node_usage=singlejob
1216	else
1217	node_usage=not_shared
1218	fi
1219	fi
1220
1221	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != RAM64GB ]]
1222	then
1223	printf "\n"
1224	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1225	printf "\n \"shared\" or \"not_shared\""
1226	locat=tasks_per_node; (( iec = 0 )); exit
1227	fi
1228
1229	fi
1230
1231	# PRUEFEN, OB HOSTFILE EXISTIERT
1232	if [[ -n $hostfile ]]
1233	then
1234	if [[ ! -f $hostfile ]]
1235	then
1236	printf "\n"
1237	printf "\n +++ hostfile \"$hostfile\" does not exist"
1238	locat=hostfile; exit
1239	fi
1240	fi
1241
1242	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1243	if [[ $host = ibmy && $do_remote = false ]]
1244	then
1245	if [[ ! -f $HOME/.rhosts ]]
1246	then
1247	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1248	printf "\n\n *** file:"
1249	printf "\n $HOME/.rhosts"
1250	printf "\n was created\n"
1251	fi
1252	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1253	then
1254	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1255	printf "\n\n *** file:"
1256	printf "\n $HOME/.rhosts"
1257	printf "\n was extended by the name of the current host\n"
1258	fi
1259	fi
1260
1261
1262
1263	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1264	if [[ $queue = none ]]
1265	then
1266	case $host in
1267	(ibmh) queue=no_class;;
1268	(ibmy) queue=parallel;;
1269	(lckyoto) queue=ph;;
1270	(lcsgib) queue=bigq;;
1271	(lcsgih) queue=bigq;;
1272	(lctit) queue=RAM64GB;;
1273	(nech) queue=none;;
1274	(necriam) queue=SP;;
1275	(unics) queue=unics;;
1276	esac
1277	fi
1278
1279
1280	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1281	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1282	# ERMITTELN
1283	(( i = 0 ))
1284	while (( i < iin ))
1285	do
1286	(( i = i + 1 ))
1287	(( maxcycle = 0 ))
1288
1289	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1290	if [[ "${actionin[$i]}" = di ]]
1291	then
1292	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1293	# REM-MASCHINE AUSWERTEN
1294	eval filename=${pathin[$i]}/${endin[$i]}
1295	else
1296	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1297	# REM-MASCHINE AUSWERTEN
1298	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1299	fi
1300
1301	# PRUEFEN AUF VORHANDENSEIN
1302	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1303	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1304	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1305	then
1306	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1307	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1308	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1309	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1310	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1311	if [[ "${transin[$i]}" != "locopt" ]]
1312	then
1313	printf "\n\n +++ INPUT-file: "
1314	if [[ "${extin[$i]}" = "" ]]
1315	then
1316	printf "\n $filename"
1317	else
1318	printf "\n $filename.${extin[$i]}"
1319	fi
1320	printf "\n does not exist\n"
1321	locat=input; exit
1322	else
1323	transin[$i]="unavailable"
1324	fi
1325	else
1326
1327	# ZYKLUSNUMMER FESTSTELLEN
1328	ls -1 -d $filename > filelist 2>/dev/null
1329	ls -1 -d $filename.* >> filelist 2>/dev/null
1330	while read zeile
1331	do
1332	cycle=$(print $zeile \| cut -f2 -d".")
1333	if [[ "$cycle" = "$zeile" ]]
1334	then
1335	(( icycle = 0 ))
1336	elif [[ "$cycle" = "${extin[$i]}" ]]
1337	then
1338	(( icycle = 0 ))
1339	else
1340	(( icycle = $cycle ))
1341	fi
1342	if (( icycle > maxcycle ))
1343	then
1344	(( maxcycle = icycle ))
1345	file_to_be_used=$zeile
1346	fi
1347	done <filelist
1348	rm filelist
1349
1350	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1351	if (( maxcycle > 0 ))
1352	then
1353	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1354	then
1355	filename=${filename}.$maxcycle.${extin[$i]}
1356	else
1357	filename=${filename}.$maxcycle
1358	fi
1359	else
1360	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1361	then
1362	filename=${filename}.${extin[$i]}
1363	fi
1364	fi
1365
1366	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1367	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1368	absnamein[$i]=$filename
1369	if (( maxcycle > 0 ))
1370	then
1371	if [[ "${actionin[$i]}" = di ]]
1372	then
1373	frelin[$i]=${endin[$i]}.$maxcycle
1374	else
1375	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1376	fi
1377	else
1378	if [[ "${actionin[$i]}" = di ]]
1379	then
1380	frelin[$i]=${endin[$i]}
1381	else
1382	frelin[$i]=${afname}${endin[$i]}
1383	fi
1384	fi
1385
1386	fi
1387	done
1388
1389
1390	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1391	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1392	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1393	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1394	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1395	(( i = 0 ))
1396	while (( i < iout ))
1397	do
1398	(( i = i + 1 ))
1399	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1400	then
1401	if [[ "${actionout[$i]}" = tr ]]
1402	then
1403	actionout[$i]=""
1404	elif [[ "${actionout[$i]}" = trpe ]]
1405	then
1406	actionout[$i]=pe
1407	elif [[ "${actionout[$i]}" = tra ]]
1408	then
1409	actionout[$i]=a
1410	fi
1411	(( maxcycle = 0 ))
1412	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1413	eval catalogname=${pathout[$i]}
1414	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1415	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1416	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1417	then
1418
1419	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1420	if cat /dev/null > $filename
1421	then
1422	rm $filename
1423	else
1424
1425	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1426	if [[ ! -d $catalogname ]]
1427	then
1428	if mkdir -p $catalogname
1429	then
1430	printf "\n\n *** directory:"
1431	printf "\n $catalogname"
1432	printf "\n was created\n"
1433	else
1434	printf "\n\n +++ OUTPUT-file:"
1435	printf "\n $filename"
1436	printf "\n cannot be created, because directory does not exist"
1437	printf "\n and cannot be created either"
1438	printf "\n"
1439	locat=output ; exit
1440	fi 2>/dev/null
1441	else
1442	printf "\n\n +++ OUTPUT-file:"
1443	printf "\n $filename"
1444	printf "\n cannot be created, although directory exists"
1445	printf "\n"
1446	locat=output ; exit
1447	fi
1448	fi 2>/dev/null
1449	else
1450
1451	# ZYKLUSNUMMER FESTSTELLEN
1452	ls -1 -d $filename > filelist 2>/dev/null
1453	ls -1 -d $filename.* >> filelist 2>/dev/null
1454	while read zeile
1455	do
1456	cycle=$(print $zeile \| cut -f2 -d".")
1457	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1458	then
1459	(( icycle = 1 ))
1460	else
1461	(( icycle = $cycle + 1 ))
1462	fi
1463	if (( icycle > maxcycle ))
1464	then
1465	(( maxcycle = icycle ))
1466	fi
1467	done <filelist
1468	rm filelist
1469	fi
1470
1471	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1472	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1473	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1474	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1475	if [[ "${actionout[$i]}" != a ]]
1476	then
1477	if (( maxcycle > 0 ))
1478	then
1479	filename=${filename}.$maxcycle
1480	if cat /dev/null > $filename
1481	then
1482	rm $filename
1483	else
1484	printf "\n +++ OUTPUT-file:"
1485	printf "\n $filename"
1486	printf "\n cannot be created"
1487	locat=output ; exit
1488	fi
1489	fi
1490	else
1491	(( maxcycle = maxcycle - 1 ))
1492	if (( maxcycle > 0 ))
1493	then
1494	filename=${filename}.$maxcycle
1495	fi
1496	fi
1497
1498	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1499	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1500	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1501	pathout[$i]=$filename
1502	if (( maxcycle > 0 ))
1503	then
1504	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1505	else
1506	frelout[$i]=${fname}${endout[$i]}
1507	fi
1508
1509	fi
1510	done
1511
1512
1513	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1514	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1515	then
1516	if [[ "$dvr_inc" = "" ]]
1517	then
1518	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1519	printf "\n This is required for the dvrp_graphics package.\n"
1520	locat=dvr; exit
1521	fi
1522	if [[ "$dvr_lib" = "" ]]
1523	then
1524	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1525	printf "\n This is required for the dvrp_graphics package.\n"
1526	locat=dvr; exit
1527	fi
1528	fi
1529
1530
1531	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1532	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1533	# UEBERSETZT ZU WERDEN)
1534	if [[ "$mainprog" = "" && "$executable" = "" ]]
1535	then
1536	printf "\n +++ neither main program nor executable defined"
1537	locat=source; exit
1538	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1539	then
1540	printf "\n +++ main program as well as executable defined"
1541	locat=source; exit
1542	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1543	then
1544	do_compile=false
1545	fi
1546
1547
1548	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1549	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1550	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1551	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1552	then
1553	rm -rf SOURCES_FOR_RUN_$fname
1554	mkdir SOURCES_FOR_RUN_$fname
1555	fi
1556
1557
1558	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1559	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1560	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1561	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1562	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1563	then
1564
1565	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1566	[[ "$source_list" = WP ]] && source_list=WRITE_PERMIT
1567
1568
1569	# EVTL. ZU UEBERSETZENDE PROGRAMMTEILE DADURCH BESTIMMEN, DASS GEPRUEFT
1570	# WIRD, WELCHE DATEIEN WRITE-PERMIT BESITZEN (DATEIEN SOLLTEN DESHALB
1571	# UNTER RCS-KONTROLLE STEHEN). MIT DER VARIABLEN EXCLUDE KOENNEN
1572	# BESTIMMTE DATEIEN GRUNDSAETZLICH VON DER UEBERSETZUNG AUSGESCHLOSSEN
1573	# WERDEN. DIES IST NUR BEI MANUELLEM START VON MRUN DURCH DEN BENUTZER
1574	# MOEGLICH, DA BEI AUTOMATISCHEN RESTARTS TEST DURCH DIE TATSAECHLICH
1575	# ZU UBERSETZENDEN DATEIEN ERSETZT IST.
1576	# ALLE ERMITTELTEN DATEIEN WERDEN IM VERZEICHNIS SOURCES_FOR_RUN_...
1577	# GESAMMELT
1578	if [[ "$source_list" = WRITE_PERMIT ]]
1579	then
1580
1581	source_list=""
1582	cd $source_path
1583
1584
1585	# ALLE MOEGLICHEN QUELLCODEDATEIEN AUFLISTEN
1586	Names=$(ls -1 *.f90 2>&1)
1587	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && Filenames="$Names"
1588	Names=$(ls -1 *.F90 2>&1)
1589	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && Filenames="$Filenames $Names"
1590	Names=$(ls -1 *.F 2>&1)
1591	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && Filenames="$Filenames $Names"
1592	Names=$(ls -1 *.f 2>&1)
1593	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && Filenames="$Filenames $Names"
1594	Names=$(ls -1 *.c 2>&1)
1595	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && Filenames="$Filenames $Names"
1596
1597
1598	# DATEIEN MIT WRITE-PERMIT NACH SOURCES_FOR_RUN_... KOPIEREN
1599	for dateiname in $Filenames
1600	do
1601	if [[ -w $dateiname ]]
1602	then
1603	if [[ "$exclude" = "" \|\| $(echo $exclude \| grep -c $dateiname) = 0 ]]
1604	then
1605	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1606	source_list=$source_list"$dateiname "
1607	fi
1608	fi
1609	done
1610
1611	cd - > /dev/null
1612
1613
1614	elif [[ "$source_list" = LOCALLY_MODIFIED ]]
1615	then
1616
1617	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1618	source_list=""
1619	cd $source_path
1620
1621
1622	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1623	if [[ ! -d .svn ]]
1624	then
1625	printf "\n\n +++ source directory"
1626	printf "\n \"$source_path\" "
1627	printf "\n is not under control of \"subversion\"."
1628	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1629	fi
1630
1631
1632	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1633	Filenames=""
1634	svn status > tmp_mrun
1635	while read line
1636	do
1637	firstc=`echo $line \| cut -c1`
1638	if [[ $firstc = M \|\| $firstc = "?" ]]
1639	then
1640	Name=`echo "$line" \| cut -c8-`
1641	extension=`echo $Name \| cut -d. -f2`
1642	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1643	then
1644	Filenames="$Filenames "$Name
1645	fi
1646	fi
1647	done < tmp_mrun
1648
1649
1650	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1651	for dateiname in $Filenames
1652	do
1653	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1654	source_list=$source_list"$dateiname "
1655	done
1656
1657	cd - > /dev/null
1658
1659
1660	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1661	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1662	# VORHANDEN
1663	elif [[ "$source_list" != "" && $restart_run != true ]]
1664	then
1665
1666	cd $source_path
1667
1668	for filename in $source_list
1669	do
1670
1671	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1672	if [[ $(print $filename \| grep -c "/") != 0 ]]
1673	then
1674	printf "\n +++ source code file: $filename"
1675	printf "\n must not contain (\"/\") "
1676	locat=source; exit
1677	fi
1678
1679	if [[ ! -f $filename ]]
1680	then
1681	printf "\n +++ source code file: $filename"
1682	printf "\n does not exist"
1683	locat=source; exit
1684	else
1685	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1686	fi
1687
1688	done
1689
1690	cd - > /dev/null
1691
1692	fi
1693
1694
1695	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1696	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1697	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1698	if [[ $restart_run != true ]]
1699	then
1700
1701	if [[ ! -f "$source_path/$mainprog" ]]
1702	then
1703	printf "\n\n +++ main program: $mainprog"
1704	printf "\n does not exist in source directory"
1705	printf "\n \"$source_path\"\n"
1706	locat=source; exit
1707	else
1708	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1709	then
1710	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1711	source_list=${mainprog}" $source_list"
1712	fi
1713	fi
1714	fi
1715
1716
1717	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1718	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1719	if [[ "$restart_run" != true ]]
1720	then
1721	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1722	if [[ ! -f $makefile ]]
1723	then
1724	printf "\n +++ file \"$makefile\" does not exist"
1725	locat=make; exit
1726	else
1727	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1728	fi
1729	fi
1730
1731
1732	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1733	if [[ $restart_run != true && "$add_source_path" != "" ]]
1734	then
1735
1736	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1737	if [[ ! -d $add_source_path ]]
1738	then
1739	printf "\n\n +++ WARNING: additional source code directory"
1740	printf "\n \"$add_source_path\" "
1741	printf "\n does not exist or is not a directory."
1742	printf "\n No source code will be used from this directory!\n"
1743	add_source_path=""
1744	sleep 3
1745	else
1746
1747	cd $add_source_path
1748	found=false
1749
1750	Names=$(ls -1 *.f90 2>&1)
1751	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1752	Names=$(ls -1 *.F90 2>&1)
1753	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1754	Names=$(ls -1 *.F 2>&1)
1755	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1756	Names=$(ls -1 *.f 2>&1)
1757	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1758	Names=$(ls -1 *.c 2>&1)
1759	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1760
1761	cd - > /dev/null
1762	cd SOURCES_FOR_RUN_$fname
1763
1764	# COPY MAKEFILE IF EXISTING
1765	if [[ -f $add_source_path/Makefile ]]
1766	then
1767	printf "\n\n *** user Makefile from directory"
1768	printf "\n \"$add_source_path\" is used \n"
1769	sleep 1
1770	cp $add_source_path/Makefile .
1771	fi
1772
1773	for dateiname in $AddFilenames
1774	do
1775	if [[ -f $dateiname ]]
1776	then
1777	printf "\n +++ source code file \"$dateiname\" found in additional"
1778	printf "\n source code directory \"$add_source_path\" "
1779	printf "\n but was also given with option \"-s\" which means that it should be taken"
1780	printf "\n from directory \"$source_path\"."
1781	locat=source; exit
1782	fi
1783
1784	cp $add_source_path/$dateiname .
1785	source_list="$source_list $dateiname"
1786
1787	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1788	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1789	then
1790	printf "\n\n +++ user file \"$dateiname\" "
1791	printf "\n is not listed in Makefile \n"
1792	locat=source; exit
1793	else
1794
1795	# Default User-Interface von der Liste entfernen, falls Datei
1796	# ein User-Interface enthaelt
1797	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1798	# then
1799	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1800	# then
1801	# rm -rf user_interface.f90
1802	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1803	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1804	# printf "\n since a user-interface is found in file"
1805	# printf "\n \"$add_source_path/$dateiname\" \n"
1806	# sleep 3
1807	# else
1808	if [[ $found = false ]]
1809	then
1810	found=true
1811	printf "\n\n *** following user file(s) added to the"
1812	printf " files to be translated:\n "
1813	fi
1814	printf "$dateiname "
1815	sleep 0.5
1816	fi
1817	done
1818	[[ $found = true ]] && printf "\n"
1819	cd - > /dev/null
1820	fi
1821	fi
1822
1823
1824	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1825	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1826	if [[ $restart_run != true && -n $package_list ]]
1827	then
1828
1829	cd $source_path
1830
1831	for package in $package_list
1832	do
1833
1834	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1835
1836	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1837	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1838	# LIEFERT
1839	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1840
1841
1842	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1843	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1844	for source_list_name in $package_source_list
1845	do
1846	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1847	then
1848
1849	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1850	ending=`echo $source_list_name \| cut -f2 -d.`
1851	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1852	then
1853	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1854	source_list="$source_list $source_list_name"
1855	fi
1856	fi
1857	done
1858	done
1859
1860	cd - > /dev/null
1861	fi
1862
1863
1864	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1865	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1866	# if [[ "$restart_run" != true ]]
1867	# then
1868	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1869	# if [[ ! -f $makefile ]]
1870	# then
1871	# printf "\n +++ file \"$makefile\" does not exist"
1872	# locat=make; exit
1873	# else
1874	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1875	# fi
1876	# fi
1877
1878	fi # do_compile=true
1879
1880
1881	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1882	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1883	if [[ $do_compile = true ]]
1884	then
1885
1886	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1887	# ZUSAMMENSETZEN
1888	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1889	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1890	then
1891	cpp_options="${cpp_options},-D__ibm=__ibm"
1892	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1893	then
1894	cpp_options="$cpp_options -D__nec"
1895	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1896	then
1897	cpp_options="$cpp_options -D__lc"
1898	else
1899	cpp_options="$cpp_options -D__$localhost"
1900	fi
1901
1902	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1903	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1904	then
1905	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1906	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1907	else
1908	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1909	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1910	fi
1911
1912	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1913	if [[ -n $package_list ]]
1914	then
1915	for package in $package_list
1916	do
1917	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1918	then
1919	if [[ $package != "dvrp_graphics+1PE" ]]
1920	then
1921	cpp_options="${cpp_options},-D__$package=__$package"
1922	else
1923	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1924	export use_seperate_pe_for_dvrp_output=true
1925	fi
1926	else
1927	if [[ $package != "dvrp_graphics+1PE" ]]
1928	then
1929	cpp_options="$cpp_options -D__$package"
1930	else
1931	cpp_options="$cpp_options -D__dvrp_graphics"
1932	export use_seperate_pe_for_dvrp_output=true
1933	fi
1934	fi
1935	done
1936	fi
1937
1938	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1939	if [[ -n $cpp_opts ]]
1940	then
1941	for popts in $cpp_opts
1942	do
1943	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1944	then
1945	cpp_options="${cpp_options},-D__$popts=__$popts"
1946	else
1947	cpp_options="$cpp_options -D__$popts"
1948	fi
1949	done
1950	fi
1951
1952	else
1953
1954
1955	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1956	if [[ $do_remote = false ]]
1957	then
1958	if [[ ! -f $executable ]]
1959	then
1960	printf "\n +++ executable file: $executable"
1961	printf "\n does not exist"
1962	locat=executable; exit
1963	fi
1964	fi
1965	fi
1966
1967
1968	# JOBMODUS FESTSTELLEN
1969	if [[ "$ENVIRONMENT" = BATCH && $localhost != lctit \|\| "$QUEUE" != interactive && $localhost = lctit ]]
1970	then
1971	jobmo=BATCH
1972	else
1973	jobmo=INTERACTIVE
1974	fi
1975
1976
1977	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1978	# DURCH BENUTZER ANDERWEITIG VEREINBART
1979	if [[ "$compiler_name" = "" ]]
1980	then
1981
1982	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
1983	locat=compiler_name; exit
1984
1985	fi
1986
1987
1988	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
1989	[[ $localhost = necriam ]] && compiler_name=mpif90
1990
1991
1992
1993	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
1994	kennung=$RANDOM
1995	if [[ "$tmp_user_catalog" = "" ]]
1996	then
1997	if [[ $localhost = ibmh ]]
1998	then
1999	tmp_user_catalog=$SCRATCH
2000	elif [[ $localhost = nech ]]
2001	then
2002	tmp_user_catalog=$WRKSHR
2003	else
2004	tmp_user_catalog=/tmp
2005	fi
2006	fi
2007	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
2008
2009
2010	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
2011	# BESTIMMEN
2012	if [[ "$tmp_data_catalog" = "" ]]
2013	then
2014	if [[ $localhost = nech ]]
2015	then
2016	tmp_data_catalog=$WRKSHR/mrun_restart_data
2017	else
2018	tmp_data_catalog=/tmp/mrun_restart_data
2019	fi
2020	fi
2021
2022
2023	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
2024	# ERSETZEN
2025	if [[ $do_remote = false && $do_compile = true ]]
2026	then
2027	eval fopts=\"$fopts\"
2028	eval lopts=\"$lopts\"
2029	fi
2030
2031
2032
2033	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
2034	fopts="$fopts $netcdf_inc $dvr_inc"
2035	lopts="$lopts $netcdf_lib $dvr_lib"
2036	ROPTS="$ropts"
2037	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxt4 \|\| $host = lcxt5m \|\| $host = lck ) && -n $numprocs ]]
2038	then
2039	XOPT="-X $numprocs"
2040	fi
2041
2042
2043
2044	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
2045	# GRAMM BENOETIGT
2046	done=false
2047	while [[ $done = false ]]
2048	do
2049	cputime=$cpumax
2050	if (( $cputime == 0 ))
2051	then
2052	if [[ $do_batch = true ]]
2053	then
2054	printf "\n +++ cpu-time is undefined"
2055	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
2056	printf "\n >>> "
2057	read cputime 1>/dev/null 2>&1
2058	else
2059	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
2060	fi
2061	else
2062	done=true
2063	fi
2064	cpumax=$cputime
2065	done
2066
2067	(( minuten = cputime / 60 ))
2068	(( sekunden = cputime - minuten * 60 ))
2069
2070
2071	# PRUEFEN DER KERNSPEICHERANFORDERUNG
2072	if [[ $do_batch = true ]]
2073	then
2074	done=false
2075	while [[ $done = false ]]
2076	do
2077	if (( memory == 0 ))
2078	then
2079	printf "\n +++ memory demand is undefined"
2080	printf "\n >>> Please type memory in MByte per process as INTEGER:"
2081	printf "\n >>> "
2082	read memory 1>/dev/null 2>&1
2083	else
2084	done=true
2085	fi
2086	done
2087	fi
2088
2089
2090	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
2091	if [[ $do_remote = true && -z $remote_username ]]
2092	then
2093	while [[ -z $remote_username ]]
2094	do
2095	printf "\n +++ username on remote host \"$host\" is undefined"
2096	printf "\n >>> Please type username:"
2097	printf "\n >>> "
2098	read remote_username
2099	done
2100	mc="$mc -u$remote_username"
2101	fi
2102
2103
2104	# set module load command and export for subjob
2105	if [[ "$modules" != "" ]]
2106	then
2107	export module_calls="module load ${modules};"
2108	fi
2109
2110	# bugfix for wrong netcdf module
2111	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2112	then
2113	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
2114	then
2115	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
2116	fi
2117	fi
2118
2119
2120	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
2121	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2122	then
2123	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
2124	then
2125	mpilib=mpt
2126	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
2127	then
2128	mpilib=mvapich
2129	fi
2130	fi
2131
2132
2133
2134	###########################################################################
2135	# HEADER-AUSGABE
2136	###########################################################################
2137
2138
2139	calltime=$(date)
2140	printf "\n"
2141	# [[ $silent = false ]] && clear
2142	printf "#--------------------------------------------------------------# \n"
2143	printf "\| $version$calltime \| \n"
2144	printf "\| \| \n"
2145	spalte1="called on:"; spalte2=$localhost_realname
2146	printf "\| $spalte1$spalte2 \| \n"
2147	if [[ $local_compile = false ]]
2148	then
2149	if [[ $do_remote = true ]]
2150	then
2151	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2152	else
2153	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2154	fi
2155	else
2156	spalte1="compiling test only!"; spalte2=""
2157	fi
2158	printf "\| $spalte1$spalte2 \| \n"
2159	if [[ -n $numprocs ]]
2160	then
2161	spalte1="number of PEs:"; spalte2=$numprocs
2162	printf "\| $spalte1$spalte2 \| \n"
2163	fi
2164	if [[ -n $tasks_per_node ]]
2165	then
2166	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2167	printf "\| $spalte1$spalte2 \| \n"
2168	fi
2169	if [[ $use_openmp = true ]]
2170	then
2171	spalte1="threads per task:"; spalte2="$threads_per_task"
2172	printf "\| $spalte1$spalte2 \| \n"
2173	fi
2174	printf "\| \| \n"
2175	if [[ $do_compile = true ]]
2176	then
2177	if [[ "$mopts" != "" ]]
2178	then
2179	spalte1="make options:"; spalte2=$mopts
2180	printf "\| $spalte1$spalte2 \| \n"
2181	zeile=$(echo "$mopts" \| cut -c41-)
2182	while [[ "$zeile" != "" ]]
2183	do
2184	spalte1=""
2185	spalte2=$zeile
2186	printf "\| $spalte1$spalte2 \| \n"
2187	zeile=$(echo "$zeile" \| cut -c41-)
2188	done
2189	fi
2190
2191	spalte1="cpp directives:"; spalte2=$cpp_options
2192	printf "\| $spalte1$spalte2 \| \n"
2193	zeile=$(echo "$cpp_options" \| cut -c41-)
2194	while [[ "$zeile" != "" ]]
2195	do
2196	spalte1=""
2197	spalte2=$zeile
2198	printf "\| $spalte1$spalte2 \| \n"
2199	zeile=$(echo "$zeile" \| cut -c41-)
2200	done
2201
2202	spalte1="compiler options:"; spalte2="$fopts"
2203	printf "\| $spalte1$spalte2 \| \n"
2204	zeile=$(echo "$fopts" \| cut -c41-)
2205	while [[ "$zeile" != "" ]]
2206	do
2207	spalte1=""
2208	spalte2=$zeile
2209	printf "\| $spalte1$spalte2 \| \n"
2210	zeile=$(echo "$zeile" \| cut -c41-)
2211	done
2212
2213	spalte1="linker options:"; spalte2=$lopts
2214	printf "\| $spalte1$spalte2 \| \n"
2215	zeile=$(echo "$lopts" \| cut -c41-)
2216	while [[ "$zeile" != "" ]]
2217	do
2218	spalte1=""
2219	spalte2=$zeile
2220	printf "\| $spalte1$spalte2 \| \n"
2221	zeile=$(echo "$zeile" \| cut -c41-)
2222	done
2223
2224	spalte1="modules to be load:"; spalte2=$modules
2225	printf "\| $spalte1$spalte2 \| \n"
2226	zeile=$(echo "$modules" \| cut -c41-)
2227	while [[ "$zeile" != "" ]]
2228	do
2229	spalte1=""
2230	spalte2=$zeile
2231	printf "\| $spalte1$spalte2 \| \n"
2232	zeile=$(echo "$zeile" \| cut -c41-)
2233	done
2234
2235	spalte1="main program":; spalte2=$mainprog
2236	printf "\| $spalte1$spalte2 \| \n"
2237	else
2238	spalte1=executable:; spalte2=$executable
2239	printf "\| $spalte1$spalte2 \| \n"
2240	fi
2241	printf "\| \| \n"
2242	spalte1="base name of files":; spalte2=$fname
2243	printf "\| $spalte1$spalte2 \| \n"
2244	if [[ $fname != $afname ]]
2245	then
2246	spalte1="base name of input files":; spalte2=$afname
2247	printf "\| $spalte1$spalte2 \| \n"
2248	fi
2249	spalte1="INPUT control list":; spalte2=$input_list
2250	printf "\| $spalte1$spalte2 \| \n"
2251	spalte1="OUTPUT control list":; spalte2=$output_list
2252	printf "\| $spalte1$spalte2 \| \n"
2253
2254	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2255	then
2256	spalte1="memory demand / PE":; spalte2="$memory MB"
2257	printf "\| $spalte1$spalte2 \| \n"
2258	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2259	printf "\| $spalte1$spalte2 \| \n"
2260	fi
2261
2262	if [[ $do_compile = true ]]
2263	then
2264	printf "\| \| \n"
2265	printf "\| Files to be compiled: \| \n"
2266	zeile=$source_list
2267	while [[ "$zeile" != "" ]]
2268	do
2269	spalte3=$zeile
2270	printf "\| $spalte3 \| \n"
2271	zeile=$(echo "$zeile" \| cut -c61-)
2272	done
2273	fi
2274	printf "#--------------------------------------------------------------#"
2275
2276
2277
2278	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2279	if [[ $do_trace = true ]]
2280	then
2281	(( i = 0 ))
2282	while (( i < iin ))
2283	do
2284	(( i = i + 1 ))
2285	if (( i == 1 ))
2286	then
2287	printf "\n\n >>> INPUT-file assignments:\n"
2288	fi
2289	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2290	done
2291	(( i = 0 ))
2292	while (( i < iout ))
2293	do
2294	(( i = i + 1 ))
2295	if (( i == 1 ))
2296	then
2297	printf "\n\n >>> OUTPUT-file assignments:\n"
2298	fi
2299	printf "\n ${localout[$i]} : ${pathout[$i]}"
2300	done
2301	(( i = 0 ))
2302	while (( i < iic ))
2303	do
2304	(( i = i + 1 ))
2305	if (( i == 1 ))
2306	then
2307	printf "\n\n >>> INPUT-commands:\n"
2308	fi
2309	printf "\n ${in_command[$i]}"
2310	done
2311	(( i = 0 ))
2312	while (( i < ioc ))
2313	do
2314	(( i = i + 1 ))
2315	if (( i == 1 ))
2316	then
2317	printf "\n\n >>> OUTPUT-commands:\n"
2318	fi
2319	printf "\n ${out_command[$i]}"
2320	done
2321	fi
2322
2323
2324	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2325	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2326	then
2327	antwort=dummy
2328	printf "\n\n"
2329	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2330	do
2331	printf " >>> everything o.k. (y/n) ? "
2332	read antwort
2333	done
2334	if [[ $antwort = n \|\| $antwort = N ]]
2335	then
2336	locat=user_abort; (( iec = 0 )); exit
2337	fi
2338	if [[ $do_batch = true ]]
2339	then
2340	printf " >>> batch-job will be created and submitted"
2341	else
2342	if [[ $local_compile = false ]]
2343	then
2344	printf " >>> MRUN will now continue to execute on this machine"
2345	else
2346	printf " >>> a test compilation will now be carried out on this machine"
2347	fi
2348	fi
2349	fi
2350
2351
2352
2353
2354	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2355	# CHENDE AKTIONEN DURCHGEFUEHRT
2356	if [[ $do_batch = false ]]
2357	then
2358
2359
2360	# TEMPORAEREN KATALOG ERZEUGEN
2361	mkdir -p $TEMPDIR
2362	chmod go+rx $TEMPDIR
2363	tmpcreate=true
2364
2365	# set striping on lustre file system
2366	# if [[ $localhost = lcsgih ]]
2367	# then
2368	# lfs setstripe -s 8192k -c 16 $TEMPDIR
2369	# lfs getstripe $TEMPDIR
2370	# fi
2371
2372
2373	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2374	# TEMPORAERES VERZEICHNIS KOPIEREN
2375	if [[ $do_compile = true ]]
2376	then
2377
2378	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2379	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2380	if [[ $localhost = nech ]]
2381	then
2382	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2383	if mkdir -p $TEMPDIR_COMPILE
2384	then
2385	printf "\n *** \"$TEMPDIR_COMPILE\" "
2386	printf "\n is generated as temporary directory for cross compiling\n"
2387	else
2388	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2389	printf "\n needed for cross compilation failed"
2390	locat=compile
2391	exit
2392	fi
2393	else
2394	TEMPDIR_COMPILE=$TEMPDIR
2395	fi
2396
2397
2398	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2399	line=""
2400	grep "%depository_path" $config_file > tmp_mrun
2401	while read line
2402	do
2403	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2404	then
2405	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2406	then
2407	global_depository_path=`echo $line \| cut -d" " -s -f2`
2408	fi
2409	fi
2410	done < tmp_mrun
2411
2412	line=""
2413	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2414	while read line
2415	do
2416	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2417	then
2418	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2419	then
2420	local_depository_path=`echo $line \| cut -d" " -s -f2`
2421	fi
2422	fi
2423	done < tmp_mrun
2424
2425	if [[ "$local_depository_path" = "" ]]
2426	then
2427	if [[ "$global_depository_path" != "" ]]
2428	then
2429	local_depository_path=$global_depository_path
2430	else
2431	printf "\n\n +++ no depository path found in configuration file"
2432	printf "\n for local host \"$localhost\" "
2433	printf "\n please set \"\%depository_path\" in configuration file\n"
2434	locat=config_file; exit
2435	fi
2436	fi
2437	eval local_depository_path=$local_depository_path
2438	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2439	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2440
2441
2442	basename=`print $mainprog \| cut -f1 -d"."`
2443	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2444	if [[ ! -f $make_depository ]]
2445	then
2446	printf "\n"
2447	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2448	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2449	else
2450	cp $make_depository $TEMPDIR_COMPILE
2451	cd $TEMPDIR_COMPILE
2452	tar -xf $make_depository > /dev/null 2>&1
2453	cd - > /dev/null
2454	fi
2455
2456	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2457
2458	else
2459
2460	cp $executable ${TEMPDIR}/a.out
2461
2462	fi
2463
2464
2465	# WECHSEL IN TEMPORAEREN KATALOG
2466	cd $TEMPDIR
2467	printf "\n *** changed to temporary directory: $TEMPDIR"
2468
2469
2470	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2471	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2472	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2473	# ERMITTELN
2474	(( i = 0 ))
2475	while (( i < iout ))
2476	do
2477	(( i = i + 1 ))
2478	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2479	then
2480	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2481	else
2482	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2483	fi
2484	done
2485
2486
2487	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2488	if [[ $do_compile = true ]]
2489	then
2490
2491
2492	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2493	printf "\n\n\n *** compilation starts \n$striche\n"
2494	printf " *** compilation with make using following options:\n"
2495	printf " make depository: $make_depository"
2496	if [[ "$mopts" != "" ]]
2497	then
2498	printf " make options: $mopts\n"
2499	fi
2500	printf " compilername: $compiler_name\n"
2501	printf " compiler options: $fopts\n"
2502	printf " preprocessor directives: $cpp_options \n"
2503	printf " linker options: $lopts \n"
2504	if [[ "$modules" != "" ]]
2505	then
2506	printf " modules to be load: $modules \n"
2507	fi
2508	printf " source code files: $source_list \n"
2509
2510	if [[ $localhost = nech ]]
2511	then
2512	ssh 136.172.44.192 -l $usern ". /SX/opt/etc/initsx.sh; $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2513	cp $TEMPDIR_COMPILE/a.out .
2514	[[ $? != 0 ]] && compile_error=true
2515	rm -rf $TEMPDIR_COMPILE
2516	elif [[ $localhost = ibmh ]]
2517	then
2518	printf " compiler is called via ssh on \"plogin1\" \n"
2519	ssh plogin1 -l $usern "export PATH=/sw/ibm/xlf/12.1.0.3/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2520	[[ ! -f a.out ]] && compile_error=true
2521	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2522	elif [[ $localhost = lcsgib ]]
2523	then
2524	printf " compiler is called via ssh on \"bicegate0\" \n"
2525	ssh bicegate0 -l $usern ". /usr/share/modules/init/bash; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2526	[[ ! -f a.out ]] && compile_error=true
2527	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2528	elif [[ $localhost = lcsgih ]]
2529	then
2530	printf " compiler is called via ssh on \"hicegate0\" \n"
2531	ssh hicegate0 -l $usern ". /usr/share/modules/init/bash; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2532	[[ ! -f a.out ]] && compile_error=true
2533	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2534	else
2535	[[ $localhost = lctit ]] && export LM_LICENSE_FILE=27050@tggls
2536	[[ $localhost = lcxt4 ]] && . /opt/modules/default/init/ksh
2537	[[ "$module_calls" != "" ]] && eval $module_calls
2538	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2539	fi
2540
2541	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2542	then
2543	printf "\n +++ error occured while compiling or linking"
2544	locat=compile
2545
2546	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
2547	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
2548	# then
2549	exit
2550	# else
2551	# locat=normal
2552	# fi
2553	else
2554	printf "$striche\n *** compilation finished \n"
2555	fi
2556	fi
2557
2558
2559	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2560	if [[ $local_compile = true ]]
2561	then
2562	cd $HOME
2563	rm -rf $TEMPDIR
2564	locat=local_compile; exit
2565	fi
2566
2567
2568	# BEREITSTELLEN DER INPUT-DATEIEN
2569	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2570	(( i = 0 ))
2571	while (( i < iin ))
2572	do
2573	(( i = i + 1 ))
2574	if (( i == 1 ))
2575	then
2576	printf "\n\n *** providing INPUT-files:\n$striche"
2577	fi
2578
2579
2580	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2581	if [[ "${transin[$i]}" = unavailable ]]
2582	then
2583	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2584	then
2585	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2586	printf "\n is not available!"
2587	else
2588	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2589	printf "\n is not available!"
2590	fi
2591	continue
2592	fi
2593
2594	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2595	files_for_pes=false; datentyp=file
2596	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2597	then
2598	files_for_pes=true; datentyp=directory
2599	actionin[$i]=""
2600	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2601	then
2602	actionin[$i]=""
2603	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2604	then
2605	files_for_pes=true; datentyp=directory
2606	actionin[$i]="ar"
2607	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2608	then
2609	actionin[$i]="ar"
2610	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2611	then
2612	files_for_pes=true; datentyp=directory
2613	actionin[$i]="fl"
2614	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2615	then
2616	actionin[$i]="fl"
2617	fi
2618
2619	if [[ $files_for_pes = true ]]
2620	then
2621	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
2622	else
2623	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
2624	fi
2625
2626	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
2627	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
2628	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
2629	# SERVER ZU HOLEN
2630	if [[ "${actionin[$i]}" = fl ]]
2631	then
2632	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
2633	if [[ $files_for_pes = false ]]
2634	then
2635	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
2636	then
2637	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
2638	got_tmp[$i]=true
2639	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2640	then
2641	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2642	printf "\n *** trying to use backup copy in \"$WORK\" "
2643	cp $WORK/${frelin[$i]} ${localin[$i]}
2644	else
2645	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2646	printf "\n or \"$tmp_data_catalog\" does not exist!"
2647	printf "\n *** trying to get copy from archive"
2648	actionin[$i]=ar
2649	fi
2650	else
2651	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
2652	then
2653	mkdir ${localin[$i]}
2654	cd $tmp_data_catalog/${frelin[$i]}
2655	for file in $(ls *)
2656	do
2657	ln $file $TEMPDIR/${localin[$i]}
2658	done
2659	cd $TEMPDIR
2660	got_tmp[$i]=true
2661	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2662	then
2663	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2664	printf "\n *** trying to use backup copy in \"$WORK\" "
2665	cp -r $WORK/${frelin[$i]} ${localin[$i]}
2666	else
2667	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2668	printf "\n or \"$tmp_data_catalog\" does not exist!"
2669	printf "\n *** trying to get copy from archive"
2670	actionin[$i]=ar
2671	fi
2672	fi
2673	fi
2674
2675
2676	# DATEI LIEGT AUF ARCHIV-SERVER
2677	if [[ "${actionin[$i]}" = ar ]]
2678	then
2679
2680	if [[ $files_for_pes = false ]]
2681	then
2682	printf "\n file will be restored from archive-system ($archive_system)!"
2683	else
2684	printf "\n directory will be restored from archive-system ($archive_system)!"
2685	fi
2686
2687	file_restored=false
2688
2689	if [[ $archive_system = asterix ]]
2690	then
2691	do_stagein=true
2692	(( stagein_anz = 0 ))
2693	while [[ $do_stagein = true ]]
2694	do
2695	if [[ $files_for_pes = false ]]
2696	then
2697	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
2698	else
2699	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
2700	fi
2701	cat STAGEIN_OUTPUT
2702	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
2703	then
2704	file_restored=true
2705	do_stagein=false
2706	else
2707	(( stagein_anz = stagein_anz + 1 ))
2708	if (( stagein_anz == 10 ))
2709	then
2710	printf "\n +++ stagein stoped after 10 tries"
2711	locat=stage
2712	exit
2713	fi
2714	printf "\n +++ restoring from archive failed, trying again:"
2715	sleep 900
2716	fi
2717	done
2718	elif [[ $archive_system = DMF ]]
2719	then
2720	if [[ $files_for_pes = false ]]
2721	then
2722	printf "\n +++ restoring of single files impossible with $archive_system !\n"
2723	locat=DMF
2724	exit
2725	else
2726	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
2727	cp -r $ARCHIVE/${frelin[$i]} $PWD
2728	file_restored=true
2729	fi
2730	elif [[ $archive_system = tivoli ]]
2731	then
2732	if [[ $files_for_pes = false ]]
2733	then
2734	if [[ $localhost = lcsgih ]]
2735	then
2736	ssh $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2737	else
2738	ssh $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2739	fi
2740	else
2741	(( inode = 0 ))
2742	while (( inode < nodes ))
2743	do
2744	if [[ $localhost = lcsgih ]]
2745	then
2746	ssh $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2747	else
2748	ssh $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2749	fi
2750	(( inode = inode + 1 ))
2751	done
2752	fi
2753	file_restored=true
2754	elif [[ $archive_system = ut ]]
2755	then
2756	if [[ $files_for_pes = false ]]
2757	then
2758	cp $UT/${frelin[$i]} .
2759	else
2760	(( inode = 0 ))
2761	while (( inode < nodes ))
2762	do
2763	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
2764	(( inode = inode + 1 ))
2765	done
2766	fi
2767	file_restored=true
2768	else
2769	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
2770	locat=rearchive
2771	exit
2772	fi
2773
2774	if [[ $file_restored = true ]]
2775	then
2776
2777	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
2778	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
2779	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
2780	if [[ $files_for_pes = false ]]
2781	then
2782	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
2783	else
2784	mkdir $tmp_data_catalog/${frelin[$i]}
2785	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
2786	fi
2787	got_tmp[$i]=true
2788
2789	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
2790	mv ${frelin[$i]} ${localin[$i]}
2791
2792	fi
2793	fi
2794
2795
2796	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
2797	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
2798	then
2799
2800	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
2801	then
2802
2803	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
2804	printf "\n file will be provided for $numprocs processors"
2805	mkdir ${localin[$i]}
2806	ival=$numprocs
2807	(( ii = 0 ))
2808	while (( ii <= ival-1 ))
2809	do
2810	if (( ii < 10 ))
2811	then
2812	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
2813	elif (( ii < 100 ))
2814	then
2815	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
2816	elif (( ii < 1000 ))
2817	then
2818	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
2819	else
2820	cp ${absnamein[$i]} ${localin[$i]}/_$ii
2821	fi
2822	(( ii = ii + 1 ))
2823	done
2824
2825	else
2826
2827	if [[ $files_for_pes = true ]]
2828	then
2829
2830	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
2831	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
2832	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
2833	# PER MOVE UMBENANNT WERDEN
2834	printf "\n providing $numprocs files for the respective processors"
2835	mkdir ${localin[$i]}
2836	if [[ $link_local_input = true ]]
2837	then
2838	printf " using ln -f\n"
2839	cd ${absnamein[$i]}
2840	for file in $(ls *)
2841	do
2842	ln -f $file ${localin[$i]}
2843	done
2844	cd $TEMPDIR
2845	fi
2846	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
2847	if [[ ! -f "${localin[$i]}/_0000" ]]
2848	then
2849	if [[ $link_local_input = true ]]
2850	then
2851	printf " ln failed for .../_0000, using cp...\n"
2852	fi
2853	cp -r ${absnamein[$i]}/* ${localin[$i]}
2854	fi
2855
2856	else
2857	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
2858	if [[ $link_local_input = true ]]
2859	then
2860	printf " using ln -f\n"
2861	ln -f ${absnamein[$i]} ${localin[$i]}
2862	fi
2863	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
2864	if [[ ! -f "${localin[$i]}" ]]
2865	then
2866	if [[ $link_local_input = true ]]
2867	then
2868	printf " ln failed, using cp...\n"
2869	fi
2870	cp ${absnamein[$i]} ${localin[$i]}
2871	fi
2872	fi
2873	fi
2874	fi
2875
2876	done
2877	if (( i != 0 ))
2878	then
2879	printf "\n$striche\n *** all INPUT-files provided \n"
2880	fi
2881
2882
2883	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
2884	(( i = 0 ))
2885	while (( i < iic ))
2886	do
2887	(( i = i + 1 ))
2888	if (( i == 1 ))
2889	then
2890	printf "\n\n *** execution of INPUT-commands:\n$striche"
2891	fi
2892	printf "\n >>> ${in_command[$i]}"
2893	eval ${in_command[$i]}
2894	if (( i == iic ))
2895	then
2896	printf "\n$striche\n"
2897	fi
2898	done
2899
2900
2901	# VERBLEIBENDE CPU-ZEIT BERECHNEN
2902	cpurest=${cpumax}.
2903
2904
2905	# START DVR STREAMING SERVER
2906	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
2907	then
2908	if [[ "$dvr_server" != "" ]]
2909	then
2910
2911	printf "\n\n *** preparing the dvr streaming server configuration file"
2912
2913	# Check, if a dvr server is already running
2914	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
2915	if [[ "$running_dvrserver_id" != "" ]]
2916	then
2917
2918	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
2919	printf "\n This server is used instead starting a new one!"
2920	printf "\n If required, script \"process_dvr_output\" has to be run manually."
2921
2922	else
2923
2924	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
2925	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
2926	then
2927	cp ${PALM_BIN}/.dvrserver.config .
2928
2929	# Entering the BASEDIR, UID and GID into this file
2930	user_id=`id -u`
2931	group_id=`id -g`
2932	# & is needed as seperator, because TEMPDIR contains /
2933	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
2934	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
2935	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
2936	mv .dvrserver.3 .dvrserver.config
2937	rm .dvrserver.1 .dvrserver.2
2938
2939	# Start dvr server in background, get his id and print on terminal
2940	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
2941	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
2942	printf "\n *** streaming server with id=$dvrserver_id is started in background"
2943	local_dvrserver_running=.TRUE.
2944	else
2945	printf "\n +++ missing file \".dvrserver.config\" in directory:"
2946	printf "\n \"$PALM_BIN\" "
2947	locat=dvr
2948	exit
2949	fi
2950
2951	fi
2952
2953	else
2954	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
2955	fi
2956	fi
2957
2958
2959	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
2960	# LESEN VON PALM)
2961	cat > ENVPAR << %%END%%
2962	&envpar run_identifier = '$fname', host = '$localhost',
2963	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2964	maximum_cpu_time_allowed = ${cpumax}.,
2965	revision = '$global_revision',
2966	local_dvrserver_running = $local_dvrserver_running /
2967
2968	%%END%%
2969
2970
2971	# PROGRAMMSTART
2972	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
2973	PATH=$PATH:$TEMPDIR
2974
2975	# MPI debug option (argument checking, slows down execution due to increased latency)
2976	if [[ "$mpi_debug" = true ]]
2977	then
2978	export MPI_CHECK_ARGS=1
2979	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
2980	fi
2981
2982	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
2983	then
2984	if [[ "$ENVIRONMENT" = BATCH ]]
2985	then
2986	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
2987	then
2988	printf "\n +++ debug is allowed in interactive mode only"
2989	locat=debug
2990	exit
2991	fi
2992	fi
2993	if [[ $localhost = decalpha ]]
2994	then
2995	dxladebug a.out
2996	elif [[ $localhost = ibmh ]]
2997	then
2998
2999	# SETUP THE IBM MPI ENVIRONMENT
3000	export MP_SHARED_MEMORY=yes
3001	export AIXTHREADS_SCOPE=S
3002	export OMP_NUM_THREADS=$threads_per_task
3003	export AUTHSTATE=files
3004	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3005
3006	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
3007	export MP_ADAPTER_USE=shared
3008	export MP_CPU_USE=multiple
3009	export MP_TIMEOUT=1200
3010
3011	unset MP_TASK_AFFINITY
3012
3013	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
3014	#(( ii = 1 ))
3015	#while (( ii <= $numprocs ))
3016	#do
3017	# echo $localhost_realname >> hostfile
3018	# (( ii = ii + 1 ))
3019	#done
3020	#export MP_HOSTFILE=hostfile
3021
3022	if [[ "$LOADLBATCH" = yes ]]
3023	then
3024	totalview poe a.out $ROPTS
3025	else
3026	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3027	export TVDSVRLAUNCHCMD=ssh
3028	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3029	fi
3030	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
3031	then
3032	# CURRENTLY NO DEBUGGER ON LCSGI
3033	if [[ $run_coupled_model = true ]]
3034	then
3035	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
3036	locat=debug
3037	exit
3038	else
3039	echo "no_coupling" > runfile_atmos
3040	fi
3041	(( ii = $numprocs / $threads_per_task ))
3042	export OMP_NUM_THREADS=$threads_per_task
3043	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3044	if [[ $threads_per_task != 1 ]]
3045	then
3046	printf "\n threads per task: $threads_per_task"
3047	fi
3048	printf "\n\n"
3049	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3050	then
3051	# export MPI_LAUNCH_TIMEOUT=360
3052	if [[ "$totalview" = true ]]
3053	then
3054	printf "\n running totalview debugger"
3055	mpiexec_mpt -tv -n $ii ./a.out $ROPTS < runfile_atmos
3056	else
3057	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3058	fi
3059	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3060	then
3061	# ulimit -s 300000 # A too large stack size causes problems
3062	# export MV2_NUM_PORTS=2
3063	# export MV2_CPU_MAPPING=0:1:2:3
3064	if [[ "$totalview" = true ]]
3065	then
3066	printf "\n running totalview debugger"
3067	mpiexec -tv ./a.out $ROPTS < runfile_atmos
3068	else
3069	mpiexec ./a.out $ROPTS < runfile_atmos
3070	fi
3071	fi
3072	else
3073	printf "\n +++ no debug available on \"$localhost\" "
3074	printf "\n or not implemented in mrun so far"
3075	locat=debug
3076	exit
3077	fi
3078
3079	# end debug mode
3080	else
3081
3082	# normal execution
3083	if [[ -n $numprocs ]]
3084	then
3085	# RUNNING THE PROGRAM ON PARALLEL MACHINES
3086	if [[ $(echo $host \| cut -c1-3) = ibm ]]
3087	then
3088	# SETUP THE IBM MPI ENVIRONMENT
3089	if [[ $host != ibmh ]]
3090	then
3091	export MP_SHARED_MEMORY=yes
3092	export AIXTHREAD_SCOPE=S
3093	export OMP_NUM_THREADS=$threads_per_task
3094	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
3095	export AUTHSTATE=files
3096	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3097	# export MP_PRINTENV=yes
3098
3099	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3100	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3101	export MP_WAIT_MODE=poll
3102	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3103	fi
3104	if [[ "$LOADLBATCH" = yes ]]
3105	then
3106	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3107	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3108	then
3109	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3110	else
3111	if [[ $run_coupled_model = false ]]
3112	then
3113	if [[ "$ocean_file_appendix" = true ]]
3114	then
3115	echo "precursor_ocean" > runfile_atmos
3116	else
3117	echo "precursor_atmos" > runfile_atmos
3118	fi
3119	else
3120	(( iia = $numprocs_atmos / $threads_per_task ))
3121	(( iio = $numprocs_ocean / $threads_per_task ))
3122	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3123	printf "\n using $coupled_mode coupling"
3124	printf "\n\n"
3125	echo "coupled_run $iia $iio" > runfile_atmos
3126	fi
3127	poe ./a.out $ROPTS < runfile_atmos
3128	fi
3129	else
3130	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
3131	then
3132	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3133	elif [[ $localhost = ibmku \|\| $localhost = ibmy ]]
3134	then
3135	if [[ -f $hostfile ]]
3136	then
3137	cp $hostfile hostfile
3138	else
3139	(( ii = 1 ))
3140	while (( ii <= $numprocs ))
3141	do
3142	echo $localhost_realname >> hostfile
3143	(( ii = ii + 1 ))
3144	done
3145	fi
3146	export MP_HOSTFILE=hostfile
3147	if [[ $run_coupled_model = false ]]
3148	then
3149	if [[ "$ocean_file_appendix" = true ]]
3150	then
3151	echo "precursor_ocean" > runfile_atmos
3152	else
3153	echo "precursor_atmos" > runfile_atmos
3154	fi
3155	else
3156	(( iia = $numprocs_atmos / $threads_per_task ))
3157	(( iio = $numprocs_ocean / $threads_per_task ))
3158	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3159	printf "\n using $coupled_mode coupling"
3160	printf "\n\n"
3161	echo "coupled_run $iia $iio" > runfile_atmos
3162	fi
3163	if [[ $localhost = ibmy ]]
3164	then
3165	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3166	else
3167	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
3168	fi
3169
3170	else
3171	if [[ "$host_file" = "" ]]
3172	then
3173	printf "\n +++ no hostfile given in configuration file"
3174	locat=config_file
3175	exit
3176	else
3177	eval host_file=$host_file
3178	fi
3179	export MP_HOSTFILE=$host_file
3180	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3181	fi
3182	fi
3183	elif [[ $host = nech \|\| $host = necriam ]]
3184	then
3185	(( ii = nodes ))
3186	if [[ $ii = 1 ]]
3187	then
3188	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3189	export MPIPROGINF=YES
3190	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3191	echo "*** execution on single node with mpirun"
3192	mpirun -np $numprocs ./a.out $ROPTS
3193	else
3194	(( i = 0 ))
3195	while (( i < ii ))
3196	do
3197	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3198	(( i = i + 1 ))
3199	done
3200
3201	echo "#!/bin/sh" > mpi_exec_shell
3202	echo " " >> mpi_exec_shell
3203	echo "set -u" >> mpi_exec_shell
3204	echo "F_ERRCNT=0" >> mpi_exec_shell
3205	echo "MPIPROGINV=YES" >> mpi_exec_shell
3206	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3207	echo "cpurest=$cpurest" >> mpi_exec_shell
3208	echo "fname=$fname" >> mpi_exec_shell
3209	echo "localhost=$localhost" >> mpi_exec_shell
3210	echo "return_addres=$return_addres" >> mpi_exec_shell
3211	echo "return_username=$return_username" >> mpi_exec_shell
3212	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3213	echo "write_binary=$write_binary" >> mpi_exec_shell
3214	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3215	echo " " >> mpi_exec_shell
3216	echo "export F_ERRCNT" >> mpi_exec_shell
3217	echo "export MPIPROGINV" >> mpi_exec_shell
3218	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3219	echo "export cpurest" >> mpi_exec_shell
3220	echo "export fname" >> mpi_exec_shell
3221	echo "export localhost" >> mpi_exec_shell
3222	echo "export return_addres" >> mpi_exec_shell
3223	echo "export return_username" >> mpi_exec_shell
3224	echo "export tasks_per_node" >> mpi_exec_shell
3225	echo "export write_binary" >> mpi_exec_shell
3226	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3227	echo " " >> mpi_exec_shell
3228	echo "exec ./a.out" >> mpi_exec_shell
3229
3230	chmod u+x mpi_exec_shell
3231	export MPIPROGINF=YES
3232	mpirun -f multinode_config &
3233	wait
3234
3235	fi
3236	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
3237	then
3238
3239	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3240	# DOES NOT EXIST
3241	if [[ $host != lcsgih && $host != lcsgib ]]
3242	then
3243	if [[ -f $hostfile ]]
3244	then
3245	cp $hostfile hostfile
3246	else
3247	(( ii = 1 ))
3248	while (( ii <= $numprocs / $threads_per_task ))
3249	do
3250	echo $localhost_realname >> hostfile
3251	(( ii = ii + 1 ))
3252	done
3253	fi
3254	eval zeile=\"`head -n $ii hostfile`\"
3255	printf "\n *** running on: $zeile"
3256	fi
3257
3258	(( ii = $numprocs / $threads_per_task ))
3259	export OMP_NUM_THREADS=$threads_per_task
3260	# echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3261	if [[ $threads_per_task != 1 ]]
3262	then
3263	# increase stack size to unlimited, because large runs
3264	# may abort otherwise
3265	ulimit -Ss unlimited
3266	printf "\n threads per task: $threads_per_task stacksize: unlimited"
3267	fi
3268	if [[ $run_coupled_model = false ]]
3269	then
3270	if [[ "$ocean_file_appendix" = true ]]
3271	then
3272	echo "precursor_ocean" > runfile_atmos
3273	else
3274	echo "precursor_atmos" > runfile_atmos
3275	fi
3276	printf "\n\n"
3277	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3278	then
3279	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3280	then
3281	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3282	# export MPI_DSM_DISTRIBUTE=1
3283	# MPI_DSM_CPULIST: pin MPI processes to cores
3284	if [[ $use_openmp = false ]]
3285	then
3286	if [[ "$sgi_feature" = ice2 ]]
3287	then
3288	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
3289	else
3290	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3291	fi
3292	else
3293	unset MPI_DSM_CPULIST
3294	fi
3295	# MPI_IB_RAILS: use both IB rails on ICE2
3296	export MPI_BUFS_PER_HOST=512
3297	export MPI_IB_RAILS=2
3298	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3299	export MPI_CONNECTIONS_THRESHOLD=8192
3300	echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
3301	export MPI_TYPE_DEPTH=20
3302	echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
3303	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3304
3305	# next is test for openmp usage
3306	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3307	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
3308	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3309	then
3310	export MV2_NUM_PORTS=2
3311	# The default setting of MV2_CPU_MAPPING gives best results
3312	# export MV2_ENABLE_AFFINITY=1
3313	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3314	# if [[ "$sgi_feature" = ice2 ]]
3315	# then
3316	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
3317	# else
3318	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3319	# fi
3320	[[ $use_openmp = true ]] && unset MV2_CPU_MAPPING
3321	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
3322	if [[ $use_openmp = true ]]
3323	then
3324	mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
3325	else
3326	mpiexec -np $ii ./a.out $ROPTS < runfile_atmos
3327	fi
3328	fi
3329	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3330	then
3331	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3332	else
3333	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3334	fi
3335	else
3336
3337	# currently there is no full MPI-2 support on ICE and XT4
3338	(( iia = $numprocs_atmos / $threads_per_task ))
3339	(( iio = $numprocs_ocean / $threads_per_task ))
3340	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3341	printf "\n using $coupled_mode coupling"
3342	printf "\n\n"
3343
3344	if [[ $coupled_mode = "mpi2" ]]
3345	then
3346	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3347	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3348	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3349	then
3350
3351	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3352	then
3353	# export MPI_LAUNCH_TIMEOUT=360
3354	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3355	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3356	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3357	then
3358	# ulimit -s 300000 # A too large stack size causes problems
3359	# export MV2_NUM_PORTS=2
3360	# export MV2_CPU_MAPPING=0:1:2:3
3361	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3362	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3363	fi
3364
3365	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3366	then
3367
3368	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3369	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3370
3371	else
3372	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3373	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3374	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3375	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3376	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3377	fi
3378	wait
3379
3380	else
3381
3382	echo "coupled_run $iia $iio" > runfile_atmos
3383	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3384	then
3385
3386	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3387	then
3388	# export MPI_LAUNCH_TIMEOUT=360
3389	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3390	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3391	then
3392	# ulimit -s 300000 # A too large stack size causes problems
3393	# export MV2_NUM_PORTS=2
3394	# export MV2_CPU_MAPPING=0:1:2:3
3395	mpiexec ./a.out $ROPTS < runfile_atmos
3396	fi
3397
3398	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3399	then
3400
3401	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3402
3403	elif [[ $host = lck ]]
3404	then
3405	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3406	fi
3407	wait
3408	fi
3409
3410	fi
3411	elif [[ $host = decalpha ]]
3412	then
3413	dmpirun -np $numprocs a.out $ROPTS
3414	elif [[ $host = lckyoto ]]
3415	then
3416	set -xv
3417	export P4_RSHCOMMAND=plesh
3418	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
3419	if [[ "$ENVIRONMENT" = BATCH ]]
3420	then
3421	if [[ "$cond2" = fujitsu ]]
3422	then
3423	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
3424	elif [[ "cond2" = pgi ]]
3425	then
3426	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
3427	else
3428	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
3429	fi
3430	else
3431	if [[ "$cond2" = "" ]]
3432	then
3433	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
3434	else
3435	mpirun -np $numprocs ./a.out $ROPTS
3436	fi
3437	fi
3438	set +xv
3439	elif [[ $host = lctit ]]
3440	then
3441	export runfile=runfile.$kennung
3442
3443	echo "cd $PWD" > $runfile
3444	echo "export OMP_NUM_THREADS=$OMP_NUM_THREADS" >> $runfile
3445	echo "export cpurest=$cpurest" >> $runfile
3446	echo "export fname=$fname" >> $runfile
3447	echo "export localhost=$localhost" >> $runfile
3448	echo "export return_addres=$return_addres" >> $runfile
3449	echo "export return_username=$return_username" >> $runfile
3450	echo "export tasks_per_node=$tasks_per_node" >> $runfile
3451	echo "export write_binary=$write_binary" >> $runfile
3452	echo "export use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> $runfile
3453	echo "./a.out" >> $runfile
3454	chmod u+x $runfile
3455
3456	if [[ "$QUEUE" = interactive ]]
3457	then
3458	mpirun -np $numprocs a.out $ROPTS
3459	else
3460	(( mem_tsubame = $memory / 1024.0 ))
3461	echo "Memory for Tsubame for each process in GB:", $mem_tsubame
3462	# n1ge -fore -g 1S060156 -mpi $numprocs -mem 4 -N palm -q $queue a.out $ROPTS
3463	# /n1ge/TITECH_GRID/tools/bin/n1ge -fore -g $group_number -mpi ${numprocs}:$tasks_per_node -mem $mem_tsubame -N palm -rt $minuten -q $queue a.out $ROPTS
3464	n1ge -fore -g $group_number -mpi ${numprocs}:$tasks_per_node -mem $mem_tsubame -N palm -rt $minuten -q $queue a.out $ROPTS
3465	fi
3466
3467	rm $runfile
3468	else
3469	mpprun -n $numprocs a.out $ROPTS
3470	fi
3471	[[ $? != 0 ]] && execution_error=true
3472
3473
3474	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3475	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3476	then
3477	apprentice
3478	fi
3479	else
3480	a.out $ROPTS
3481	fi
3482	fi
3483	if [[ $? != 0 \|\| $execution_error = true ]]
3484	then
3485
3486	# ABBRUCH BEI LAUFZEITFEHLER
3487	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3488	printf "\n +++ runtime error occured"
3489	locat=execution
3490	exit
3491	else
3492	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3493	printf "\n$striche\n *** execution finished \n"
3494
3495	# Stop the dvr streaming server and process the dvr output in order
3496	# to create dvrs- and html-files containing all streams
3497	if [[ "$dvrserver_id" != "" ]]
3498	then
3499	kill $dvrserver_id
3500	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3501
3502	# If there is a directory, data have been output by the
3503	# streaming server. Otherwise, user has chosen dvrp_output=local
3504	if [[ -d DATA_DVR ]]
3505	then
3506
3507	# Add the current dvr configuration file to the dvr output
3508	# directory
3509	cp .dvrserver.config DATA_DVR
3510
3511	# Process the dvr output (option -s for also generating
3512	# sequence mode data)
3513	process_dvr_output -d DATA_DVR -f $fname -s
3514
3515	else
3516
3517	# Process the local output
3518	process_dvr_output -l -d DATA_DVR -f $fname
3519
3520	fi
3521
3522	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3523	then
3524
3525	# Process dvr output generated in local mode (dvrp_output=local)
3526	process_dvr_output -l -d DATA_DVR -f $fname
3527
3528	fi
3529	fi
3530
3531
3532
3533	# Call of combine_plot_fields in order to merge single files written
3534	# by each PE into one file.
3535	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
3536	then
3537	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
3538	printf "\n 2d- and/or 3d-data may be incomplete!"
3539	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
3540	else
3541	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
3542	combine_plot_fields${block}.x
3543	fi
3544
3545
3546
3547	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3548	(( i = 0 ))
3549	while (( i < ioc ))
3550	do
3551	(( i = i + 1 ))
3552	if (( i == 1 ))
3553	then
3554	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
3555	fi
3556	printf "\n >>> ${out_command[$i]}"
3557	eval ${out_command[$i]}
3558	if (( i == ioc ))
3559	then
3560	printf "\n$striche\n"
3561	fi
3562	done
3563
3564
3565	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
3566	if [[ $do_trace = true ]]
3567	then
3568	printf "\n\n"
3569	ls -al
3570	fi
3571
3572
3573
3574	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
3575	(( i = 0 ))
3576	while (( i < iout ))
3577	do
3578	(( i = i + 1 ))
3579	if (( i == 1 ))
3580	then
3581	printf "\n\n *** saving OUTPUT-files:\n$striche"
3582	fi
3583
3584	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3585	files_for_pes=false; filetyp=file
3586	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
3587	then
3588	files_for_pes=true; filetyp=directory
3589	actionout[$i]=""
3590	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
3591	then
3592	actionout[$i]=""
3593	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
3594	then
3595	files_for_pes=true; filetyp=directory
3596	actionout[$i]="ar"
3597	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
3598	then
3599	actionout[$i]="ar"
3600	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
3601	then
3602	files_for_pes=true; filetyp=directory
3603	actionout[$i]="fl"
3604	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
3605	then
3606	actionout[$i]="fl"
3607	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
3608	then
3609	files_for_pes=true; filetyp=directory
3610	actionout[$i]="tr"
3611	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
3612	then
3613	actionout[$i]="tr"
3614	fi
3615
3616	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
3617	then
3618	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
3619	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
3620	then
3621	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
3622	else
3623
3624
3625	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3626	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3627	# REMOTE-RECHNUNGEN
3628	if [[ "${actionout[$i]}" = tr ]]
3629	then
3630	if [[ $localhost != $fromhost ]]
3631	then
3632	if [[ $files_for_pes = false ]]
3633	then
3634	cps=""
3635	cst=""
3636	else
3637	cps=-c
3638	cst="/"
3639	fi
3640	if [[ $localhost = nech ]]
3641	then
3642
3643	# TRANSFER IN EIGENSTAENDIGEM JOB
3644	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3645	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3646	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3647	if [[ $files_for_pes = false ]]
3648	then
3649	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3650	else
3651	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
3652	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
3653	fi
3654
3655	echo "set -x" > transfer_${localout[$i]}
3656	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3657
3658	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
3659	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
3660	printf "\n or higher cycle\n"
3661	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3662
3663	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3664
3665	if [[ $localhost = nech ]]
3666	then
3667	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3668	else
3669	if [[ "$LOGNAME" = b323013 ]]
3670	then
3671	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3672	else
3673	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3674	fi
3675	fi
3676
3677	else
3678
3679	# TRANSFER INNERHALB DIESES JOBS
3680	transfer_failed=false
3681	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
3682	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
3683	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3684	[[ $? != 0 ]] && transfer_failed=true
3685
3686	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3687	# LOKALER MASCHINE ANLEGEN
3688	if [[ $transfer_failed = true ]]
3689	then
3690	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3691	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3692
3693	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3694	# ANLEGEN.
3695	eval local_catalog=${pathout[$i]}
3696	if [[ ! -d $local_catalog ]]
3697	then
3698	printf " *** local directory does not exist. Trying to create:\n"
3699	printf " $local_catalog \n"
3700	mkdir -p $local_catalog
3701	fi
3702	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3703	transfer_problems=true
3704	fi
3705	fi
3706	else
3707
3708	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
3709	actionout[$i]=""
3710	fi
3711	fi
3712
3713
3714	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3715	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3716	# REMOTE-RECHNUNGEN
3717	if [[ "${actionout[$i]}" = tra ]]
3718	then
3719	if [[ $localhost != $fromhost ]]
3720	then
3721	if [[ $localhost = ibmh \|\| $localhost = nech ]]
3722	then
3723
3724	# TRANSFER IN EIGENSTAENDIGEM JOB
3725	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3726	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3727	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3728	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3729
3730	echo "set -x" > transfer_${localout[$i]}
3731	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3732
3733	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
3734	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
3735	printf "\n or higher cycle\n"
3736	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3737
3738	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3739
3740	if [[ $localhost = nech ]]
3741	then
3742	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3743	else
3744	if [[ $LOGNAME = b323013 ]]
3745	then
3746	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3747	else
3748	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3749	fi
3750	fi
3751
3752	else
3753
3754	# TRANSFER INNERHALB DIESES JOBS
3755	transfer_failed=false
3756	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
3757	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
3758	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3759	[[ $? != 0 ]] && transfer_failed=true
3760
3761	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3762	# LOKALER MASCHINE ANLEGEN
3763	if [[ $transfer_failed = true ]]
3764	then
3765	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3766	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3767
3768	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3769	# ANLEGEN
3770	eval local_catalog=${pathout[$i]}
3771	if [[ ! -d $local_catalog ]]
3772	then
3773	printf " *** local directory does not exist. Trying to create:\n"
3774	printf " $local_catalog \n"
3775	mkdir -p $local_catalog
3776	fi
3777
3778	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3779	transfer_problems=true
3780	fi
3781	fi
3782	else
3783
3784	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
3785	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
3786	actionout[$i]=a
3787	fi
3788	fi
3789
3790
3791	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
3792	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
3793	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
3794	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
3795	if [[ "${actionout[$i]}" = fl ]]
3796	then
3797	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3798	chmod g+rx $tmp_data_catalog
3799	if [[ $files_for_pes = false ]]
3800	then
3801	printf "\n >>> OUTPUT: ${localout[$i]} to"
3802	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3803	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
3804	else
3805	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
3806	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3807	mkdir $tmp_data_catalog/${frelout[$i]}
3808	cd ${localout[$i]}
3809	for file in $(ls *)
3810	do
3811	ln -f $file $tmp_data_catalog/${frelout[$i]}
3812	done
3813	cd $TEMPDIR
3814	fi
3815
3816
3817	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
3818	if [[ $store_on_archive_system = true ]]
3819	then
3820
3821	if [[ $archive_system = asterix ]]
3822	then
3823	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3824	if [[ $files_for_pes = false ]]
3825	then
3826	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3827	else
3828	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3829	fi
3830	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3831	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
3832	echo "then" >> archive_${frelout[$i]}
3833	echo " do_stageout=false" >> archive_${frelout[$i]}
3834	echo "else" >> archive_${frelout[$i]}
3835	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
3836	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
3837	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
3838	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
3839	if [[ $files_for_pes = false ]]
3840	then
3841	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
3842	else
3843	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
3844	fi
3845	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
3846	echo "fi" >> archive_${frelout[$i]}
3847	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3848	elif [[ $archive_system = DMF ]]
3849	then
3850	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3851	if [[ $files_for_pes = false ]]
3852	then
3853	printf "\n +++ archiving of single files impossible with $archive_system !\n"
3854	locat=DMF
3855	exit
3856	else
3857	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
3858	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
3859	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
3860	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
3861	fi
3862	elif [[ $archive_system = tivoli ]]
3863	then
3864	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3865	if [[ $files_for_pes = false ]]
3866	then
3867	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3868	echo "set -x" >> archive_${frelout[$i]}
3869	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3870	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3871	else
3872
3873	echo "set -x" >> archive_${frelout[$i]}
3874	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
3875	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3876	cd $tmp_data_catalog
3877	all_files=`ls -1 ${frelout[$i]}/*`
3878	cd - > /dev/null
3879	(( inode = 0 ))
3880	(( tp1 = tasks_per_node + 1 ))
3881	while (( inode < nodes ))
3882	do
3883	# echo "*** all_files = \"$all_files\" "
3884	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3885	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3886	# echo "*** tasks_per_node = \"$tasks_per_node\" "
3887	# echo "*** files = \"$files\" "
3888	# echo "*** all_files = \"$all_files\" "
3889	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3890	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3891	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
3892	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3893	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3894	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3895	(( inode = inode + 1 ))
3896	done
3897	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3898	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3899	fi
3900	elif [[ $archive_system = ut ]]
3901	then
3902	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3903	if [[ $files_for_pes = false ]]
3904	then
3905	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3906	echo "set -x" >> archive_${frelout[$i]}
3907	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3908	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3909	else
3910
3911	echo "set -x" >> archive_${frelout[$i]}
3912	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
3913	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
3914	cd $tmp_data_catalog
3915	all_files=`ls -1 ${frelout[$i]}/*`
3916	cd - > /dev/null
3917	(( inode = 0 ))
3918	(( tp1 = tasks_per_node + 1 ))
3919	while (( inode < nodes ))
3920	do
3921	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3922	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3923	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3924	(( inode = inode + 1 ))
3925	done
3926	fi
3927	elif [[ $archive_system = none ]]
3928	then
3929	printf " +++ archiving on $localhost not available!\n"
3930	fi
3931
3932	if [[ $archive_system != none ]]
3933	then
3934	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
3935	then
3936	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
3937	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog archive_${frelout[$i]}
3938	elif [[ $localhost = nech ]]
3939	then
3940	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
3941	fi
3942	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3943	fi
3944	else
3945	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
3946	fi
3947
3948
3949	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
3950	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
3951	if [[ $files_for_pes = false ]]
3952	then
3953	cat /dev/null > ${pathout[$i]}
3954	else
3955	mkdir -p ${pathout[$i]}
3956	fi
3957
3958	fi
3959
3960
3961	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
3962	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
3963	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
3964	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
3965	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
3966	# GEMAESSEN ARCHIVIERUNGEN GESETZT
3967	if [[ "${actionout[$i]}" = ar ]]
3968	then
3969	if [[ $files_for_pes = false ]]
3970	then
3971	printf "\n >>> OUTPUT: ${localout[$i]} to"
3972	printf "\n ${pathout[$i]}"
3973	printf "\n File will be copied to archive-system ($archive_system) !\n"
3974	else
3975	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
3976	printf "\n ${pathout[$i]}"
3977	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
3978	fi
3979	mv ${localout[$i]} ${frelout[$i]}
3980
3981	file_saved=false
3982
3983	if [[ $archive_system = asterix ]]
3984	then
3985	do_stageout=true
3986	(( stageout_anz = 0 ))
3987	while [[ $do_stageout = true ]]
3988	do
3989	if [[ $files_for_pes = false ]]
3990	then
3991	stageout ${frelout[$i]} > STAGE_OUTPUT
3992	else
3993	stageout -t ${frelout[$i]} > STAGE_OUTPUT
3994	fi
3995	cat STAGE_OUTPUT
3996	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
3997	then
3998	file_saved=true
3999	do_stageout=false
4000	else
4001	if [[ $files_for_pes = false ]]
4002	then
4003	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
4004	else
4005	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
4006	fi
4007	(( stageout_anz = stageout_anz + 1 ))
4008	if (( stageout_anz == 10 ))
4009	then
4010	printf "\n +++ stoped after 10 unsuccessful tries!"
4011	archive_save=false
4012	do_stageout=false
4013	else
4014	printf "\n *** new try to store on archive after 15 min:"
4015	sleep 900
4016	fi
4017	fi
4018	done
4019	elif [[ $archive_system = DMF ]]
4020	then
4021	if [[ $files_for_pes = false ]]
4022	then
4023	printf "\n +++ archiving of single files impossible on $archive_system!\n"
4024	locat=DMF
4025	exit
4026	else
4027	rm -rf $ARCHIVE/${frelout[$i]}
4028	cp -r ${frelout[$i]} $ARCHIVE
4029	fi
4030	file_saved=true
4031	elif [[ $archive_system = tivoli ]]
4032	then
4033	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4034	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4035	# GELEGT WERDEN
4036	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4037	chmod g+rx $tmp_data_catalog
4038	if [[ $files_for_pes = false ]]
4039	then
4040	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4041	else
4042	mkdir $tmp_data_catalog/${frelout[$i]}
4043	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4044	fi
4045
4046	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4047	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4048	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4049	if [[ $files_for_pes = false ]]
4050	then
4051	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4052	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4053	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4054	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4055	else
4056	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4057	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4058	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4059	fi
4060
4061	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
4062	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4063	file_saved=true
4064
4065	elif [[ $archive_system = ut ]]
4066	then
4067	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4068	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4069	# GELEGT WERDEN
4070	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4071	chmod g+rx $tmp_data_catalog
4072	if [[ $files_for_pes = false ]]
4073	then
4074	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4075	else
4076	mkdir $tmp_data_catalog/${frelout[$i]}
4077	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4078	fi
4079
4080	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4081	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4082	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4083	if [[ $files_for_pes = false ]]
4084	then
4085	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4086	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4087	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4088	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4089	else
4090	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4091	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4092	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4093	fi
4094
4095	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
4096	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4097	file_saved=true
4098
4099	else
4100	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
4101	archive_save=false
4102	fi
4103	if [[ $file_saved = true ]]
4104	then
4105	if [[ $files_for_pes = false ]]
4106	then
4107	cat /dev/null > ${pathout[$i]}
4108	else
4109	mkdir -p ${pathout[$i]}
4110	fi
4111	fi
4112	fi
4113
4114	# APPEND AUF LOKALER MASCHINE
4115	if [[ "${actionout[$i]}" = "a" ]]
4116	then
4117	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
4118	cat ${localout[$i]} >> ${pathout[$i]}
4119	fi
4120
4121	# KOPIEREN AUF LOKALER MASCHINE
4122	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
4123	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
4124	then
4125
4126	# KOPIEREN AUF EINPROZESSORMASCHINE
4127	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4128	then
4129	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
4130	if [[ $link_local_output = true ]]
4131	then
4132	printf " using ln -f\n"
4133	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4134	fi
4135	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4136	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
4137	then
4138	if [[ $link_local_output = true ]]
4139	then
4140	printf " ln failed, using cp...\n"
4141	fi
4142	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4143	fi
4144	else
4145	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
4146	if [[ $link_local_output = true ]]
4147	then
4148	printf " using ln -f\n"
4149	ln -f ${localout[$i]} ${pathout[$i]}
4150	fi
4151	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4152	if [[ ! -f "${pathout[$i]}" ]]
4153	then
4154	if [[ $link_local_output = true ]]
4155	then
4156	printf " ln failed, using cp...\n"
4157	fi
4158	cp ${localout[$i]} ${pathout[$i]}
4159	fi
4160	fi
4161
4162	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
4163	then
4164
4165	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
4166	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
4167	# WIRD DANN KOPIERT
4168	# PER MOVE UMBENANNT WERDEN
4169	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4170	if [[ $link_local_output = true ]]
4171	then
4172	printf " using ln -f\n"
4173	mkdir ${pathout[$i]}
4174	cd ${localout[$i]}
4175	for file in $(ls *)
4176	do
4177	ln -f $file ${pathout[$i]}
4178	done
4179	cd $TEMPDIR
4180	fi
4181	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4182	if [[ ! -f "${pathout[$i]}/_0000" ]]
4183	then
4184	if [[ $link_local_output = true ]]
4185	then
4186	printf " ln failed for .../_0000, using cp...\n"
4187	fi
4188	cp -r ${localout[$i]} ${pathout[$i]}
4189	fi
4190
4191	fi
4192	fi
4193	done
4194	if (( i != 0 ))
4195	then
4196	if [[ $transfer_problems = true ]]
4197	then
4198	printf "\n$striche\n *** OUTPUT-files saved"
4199	printf "\n +++ WARNING: some data transfers failed! \n"
4200	else
4201	printf "\n$striche\n *** all OUTPUT-files saved \n"
4202	fi
4203	fi
4204
4205
4206	# EVENTUELL FOLGEJOB STARTEN
4207	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4208	if [[ -f CONTINUE_RUN ]]
4209	then
4210
4211	if [[ $archive_save = true ]]
4212	then
4213
4214	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4215	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4216	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4217	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4218	# HANDEN
4219	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4220	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4221	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4222	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4223	then
4224	mc=`echo $mc \| sed 's/#/f/g'`
4225	fi
4226
4227
4228	# JOB STARTEN
4229	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4230	echo " $mc"
4231	printf "\n$striche\n"
4232	if [[ $localhost != $fromhost ]]
4233	then
4234
4235	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmku \|\| $localhost = ibms \|\| $localhost = lctit ]]
4236	then
4237	echo "*** ssh will be used to initiate restart-runs!"
4238	echo " return_addres=\"$return_addres\" "
4239	echo " return_username=\"$return_username\" "
4240	if [[ $return_addres = 172.20.25.41 ]]
4241	then
4242	# WORKAROUND AUF SCIROCCO AM TIT
4243	print "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc " \| ssh $return_addres -l $return_username
4244	elif [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4245	then
4246	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export LD_LIBRARY_PATH=\$LD_LIBRARY_PATH:/muksoft/packages/intel/Compiler/11.0/083/lib/intel64/;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4247	else
4248	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4249	fi
4250	else
4251	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4252	locat=restart; exit
4253	fi
4254
4255	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4256	# DER AKTUELLE JOB ENDET
4257	if [[ $queue = special1q ]]
4258	then
4259	sleep 120
4260	else
4261	sleep 30
4262	fi
4263
4264	else
4265
4266	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4267	# RUFEN WERDEN, AUSSER AUF lcfimm
4268	cd $LOCAL_PWD
4269	if [[ $localhost = lcfimm ]]
4270	then
4271	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4272	else
4273	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4274	fi
4275	cd - > /dev/null
4276	fi
4277	printf "\n$striche\n *** restart-run initiated \n"
4278
4279
4280	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4281	# GEHOLT WORDEN SIND, LOESCHEN
4282	(( i = 0 ))
4283	while (( i < iin ))
4284	do
4285	(( i = i + 1 ))
4286	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4287	then
4288	rm -r $tmp_data_catalog/${frelin[$i]}
4289	fi
4290	done
4291
4292	else
4293
4294	printf "\n +++ no restart-run possible, since errors occured"
4295	printf "\n during the archive process"
4296	fi
4297
4298	fi
4299
4300
4301
4302	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4303	if [[ "$email_notification" != "none" ]]
4304	then
4305
4306	if [[ $localhost != $fromhost ]]
4307	then
4308	if [[ -f CONTINUE_RUN ]]
4309	then
4310	echo "PALM restart run necessary" > email_text
4311	echo "description header of actual run:" >> email_text
4312	cat CONTINUE_RUN >> email_text
4313	echo "mrun-command to restart:" >> email_text
4314	echo "$mc" >> email_text
4315	else
4316	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4317	fi
4318	mail $email_notification < email_text
4319	printf "\n *** email notification sent to \"$email_notification\" "
4320	fi
4321	fi
4322
4323
4324
4325	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4326	cd $HOME
4327	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4328
4329	else
4330
4331
4332	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4333	# CHENDE AKTIONEN DURCHGEFUEHRT
4334
4335	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4336	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
4337	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4338	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4339	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4340	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4341	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4342	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4343	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4344	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4345	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4346	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4347	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4348	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4349	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4350	if [[ $use_openmp = true ]]
4351	then
4352	mrun_com=${mrun_com}" -O $threads_per_task"
4353	fi
4354	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4355	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
4356	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4357	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4358	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4359	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4360	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4361	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4362	if [[ $do_remote = true ]]
4363	then
4364	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4365	fi
4366
4367
4368	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4369	jobfile=jobfile.$RANDOM
4370
4371
4372	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4373	echo "mkdir $TEMPDIR" >> $jobfile
4374	echo "cd $TEMPDIR" >> $jobfile
4375
4376
4377	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4378	if [[ $do_trace = true ]]
4379	then
4380	echo "set -x" >> $jobfile
4381	else
4382	echo "set +vx" >> $jobfile
4383	fi
4384
4385
4386	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4387	# DATEI FUER DEN JOB
4388	if [[ $( echo $host \| cut -c1-5 ) = lcsgi ]]
4389	then
4390
4391	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4392	# KOPIEREN
4393	if [[ $restart_run != true ]]
4394	then
4395	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4396	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4397	fi
4398
4399	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4400	echo "set -x" >> $jobfile
4401	echo "scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4402	echo "export SOURCES_COMPLETE=true" >> $jobfile
4403
4404	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4405	# ARBEITSVERZEICHNIS VERSCHIEBEN
4406	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4407	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4408	echo "execute_mrun=true" >> $jobfile
4409	echo " " >> $jobfile
4410
4411	else
4412
4413	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4414	# SOWIE GEGEBENENFALLS DES MAKEFILES
4415	if [[ $do_compile = true ]]
4416	then
4417
4418	source_catalog=SOURCES_FOR_RUN_$fname
4419
4420	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4421	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4422	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4423	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4424	echo "export SOURCES_COMPLETE=true" >> $jobfile
4425	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4426
4427	for filename in $source_list
4428	do
4429	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4430	echo "cat > $filename << \"%END%\"" >> $jobfile
4431	cat $source_catalog/$filename >> $jobfile
4432	echo " " >> $jobfile
4433	echo "%END%" >> $jobfile
4434	echo " " >> $jobfile
4435	done
4436
4437	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4438	echo "cat > Makefile << \"%END%\"" >> $jobfile
4439	cat $source_catalog/Makefile >> $jobfile
4440	echo " " >> $jobfile
4441	echo "%END%" >> $jobfile
4442	echo " " >> $jobfile
4443
4444	echo "cd - > /dev/null" >> $jobfile
4445
4446	fi
4447
4448
4449	# ABSPEICHERN DER KONFIGURATIONSDATEI
4450	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4451	echo "cat > $config_file << \"%END%\"" >> $jobfile
4452	cat $config_file >> $jobfile
4453	echo "%END%" >> $jobfile
4454	echo " " >> $jobfile
4455
4456
4457	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
4458	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4459	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
4460	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
4461	echo "%END%" >> $jobfile
4462	if [[ $host = lctit ]]
4463	then
4464	echo "sed 's/bin\/ksh/home2\/usr5\/mkanda\/pub\/ksh/' < $mrun_script_name > mrun_new" >> $jobfile
4465	echo "mv mrun_new $mrun_script_name" >> $jobfile
4466	fi
4467	echo "chmod u+x $mrun_script_name" >> $jobfile
4468	echo "execute_mrun=true" >> $jobfile
4469	echo " " >> $jobfile
4470
4471	fi
4472
4473
4474	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
4475	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
4476	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
4477	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
4478	if [[ $do_remote = true ]]
4479	then
4480	(( i = 0 ))
4481	while (( i < iin ))
4482	do
4483	(( i = i + 1 ))
4484	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
4485	if [[ "${transin[$i]}" = job ]]
4486	then
4487	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
4488	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
4489	echo " " >> $jobfile
4490	echo "%END%" >> $jobfile
4491	else
4492	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
4493	fi
4494
4495	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
4496	echo "if [[ \$? = 1 ]]" >> $jobfile
4497	echo "then" >> $jobfile
4498	echo " echo \" \" " >> $jobfile
4499	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
4500	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
4501	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
4502	echo " execute_mrun=false" >> $jobfile
4503	echo "fi" >> $jobfile
4504	done
4505	fi
4506
4507	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
4508	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
4509	echo "LOCAL_PWD=$working_directory" >> $jobfile
4510	echo "export LOCAL_PWD" >> $jobfile
4511
4512	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
4513	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
4514	echo "export LOCAL_MRUN_PATH" >> $jobfile
4515
4516	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
4517	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
4518	then
4519	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
4520	fi
4521
4522	# MRUN AUF ZIELRECHNER AUFRUFEN
4523	echo "set -x" >> $jobfile
4524	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
4525
4526	echo 'ls -al; echo `pwd`' >> $jobfile
4527	echo "cd \$HOME" >> $jobfile
4528	echo "rm -rf $TEMPDIR" >> $jobfile
4529
4530
4531
4532
4533	# JOB PER SUBJOB STARTEN
4534	if [[ $silent = false ]]
4535	then
4536	printf "\n "
4537	else
4538	printf "\n\n"
4539	fi
4540
4541	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $jobfile
4542	rm -rf $jobfile
4543
4544
4545	fi # ENDE REMOTE-TEIL
4546
4547
4548
4549	# ENDE DER PROZEDUR

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source: palm/trunk/SCRIPTS/mrun @ 622

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