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source: palm/trunk/SCRIPTS/mrun @ 407

Last change on this file since 407 was 405, checked in by raasch, 15 years ago
some initial data assignments changed due to problems with gfortran compiler; bugfix in docu chapter 3.5.4; mrun test modification for hybrid mpi-openmp
Property svn:keywords set to `Id Rev`
File size: 167.3 KB

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1	#!/bin/ksh
2	# mrun - Plot-Shellskript
3	# $Id: mrun 405 2009-11-16 12:20:59Z maronga $
4
5	# Prozedur zum Starten von Modellaeufen
6
7	# letzte Aenderung:
8	# 03/03/94 - Siggi - Entwicklungsbeginn
9	# 21/03/94 - Siggi - Entwicklungsabschluss (Version 1.0)
10	# 09/12/94 - Siggi - allexport unterbunden; statt dessen werden jetzt ein-
11	# zelne Variable exportiert. Dies ist noetig, weil an-
12	# sonsten irgendein Speicher ueberlaeuft und von mrun
13	# aufgerufene Programme (z.B. stageout) mit Fehlern
14	# abbrechen (too many arguments)
15	# 20/06/95 - Siggi - noclobber muss explizit abgeschaltet, da jetzt
16	# defaultmaessig im RRZN-Profile eingeschaltet
17	# 10/06/97 - Siggi - Zusaetzliche Option -C bei cpp, damit // nicht
18	# wegfallen
19	# 25/04/00 - Siggi - Version 1.5
20	# remote_addres und remote_user in return_addres bzw.
21	# return_username umbenannt, return_username wird dem
22	# mrun-Aufruf im Job ueber Option -U mitgegeben.
23	# Neue Variable remote_username, die beim interaktiven
24	# mrun-Aufruf zwingend ueber die neue Option -u oder
25	# in der Konfigurationsdatei angegeben werden muss.
26	# 08/02/01 - Siggi - Alle mrun-Meldungen ins englische uebersetzt,
27	# Version 1.7
28	# 05/05/02 - Siggi - Uebersetzungen mittels make-Mechanismus moeglich
29	# 21/11/02 - Siggi - ENV-Variable XLFRTEOPTS wird vor Ausfuehrung auf
30	# IBM gesetzt, um Record-Laenge der NAMELIST-Dateien,
31	# zu bestimmen; Praeprozessoroptionen haben nun alle
32	# die Form -Dtext=text, weil auf IBM sonst text durch
33	# die leere Zeichenkette ersetzt wird
34	# 01/08/03 - Siggi - Test of implementing dvrp+1PE on ibm
35	# 07/01/04 - Siggi - additional preprocessor directive for ibm included
36	# (-D$OMP=OMP) in order to avoid problems with
37	# OMP_NUM_THREADS
38	# 04/01/05 - Siggi - archiving on hanni and berni is done in separate
39	# tar files, one for each node used
40	# 07/01/04 - Siggi - old code for t3e, vpp and hpcs eliminated
41	# 09/01/05 - Siggi - workaround for getting the IP address on gfdl3
42	# 17/01/05 - Siggi - job for data transfer to local machine now within
43	# job class c1 (HLRN)
44	# 27/01/05 - Siggi - IP address workaround for gfdl3 removed
45	# 28/01/05 - Siggi - tar-filenames on $PERM (HLRN) now include the
46	# base filename and cycle number
47	# 16/02/05 - Gerald - hababai validated
48	# 14/03/05 - Siggi - abort on NEC after first runtime error (F_ERRCNT)
49	# 29/03/05 - Marcus - berni*-en0 validated
50	# 21/04/05 - Siggi - transfer-job-protocol for avs-data is no more stored
51	# 24/04/05 - Siggi - netcdf support on lcmuk
52	# 25/04/05 - Siggi - netcdf support on gfld3 (decalpha)
53	# 11/05/05 - Siggi - files with non-numeric extensions (.xxx after cycle
54	# number) can now be used within interactive runs
55	# 12/05/05 - Siggi - netcdf support on ibm
56	# 13/05/05 - Siggi - error in tar-filenames on $PERM (HLRN) removed
57	# 18/05/05 - Siggi - netcdf support on nec
58	# 24/05/05 - Siggi - netcdf support on ibms
59	# 14/06/05 - Siggi - sleep interval after submit of restart job increased
60	# to 30 seconds
61	# 28/06/05 - Siggi - bora adjusted to new intel compiler (LD_LIBRARY_
62	# PATH is temporarily set)
63	# 07/09/05 - Siggi - setting of MP_EAGER_LIMIT switched off because it
64	# caused warnings in the job protocol
65	# 20/10/05 - Siggi - update of netcdf-version on decalpha (gfdl3)
66	# 25/10/05 - Siggi - error in listing files for getting the cycle number
67	# removed
68	# 26/10/05 - Siggi - new paths for dvrp-library, transfer of catalogs
69	# realized by file attribute trpe
70	# 28/10/05 - Siggi - if existing, the file extension is output in case
71	# of missing input file - no job abort in case of
72	# missing input files with file extensions
73	# (preliminary solution)
74	# 31/10/05 - Siggi - data transfer from nech now within seperate job
75	# 04/11/05 - Siggi - netcdf 3.6.0-p1 on ibmh/ibmb
76	# 07/12/05 - Siggi - gallego and elephanta admitted
77	# 30/12/05 - Siggi - gfdl5 (ibmy) admitted
78	# 10/01/06 - Siggi - cpp directive for NetCDF 64bit support
79	# 20/01/06 - Siggi - cpp directive for ibmy
80	# 09/02/06 - Siggi - ibmy admitted for batch mode
81	# 13/04/06 - Siggi - ostria admitted
82	# 18/04/06 - Siggi - usage of OpenMP implemented (additional option -O)
83	# 10/05/06 - Siggi - environment variable XLSMPOPTS set on IBM for
84	# optimization of OpenMP runs (option stacksize is
85	# necessary for large gridpoint numbers because
86	# otherwise a segmentation fault occurs)
87	# 23/05/05 - Siggi - lctit (SUN Fire X4600) admitted
88	# 21/08/06 - Siggi - standard mrun path on scirocco is as on bora
89	# 23/08/06 - Siggi - netcdf support for scirocco (notebook)
90	# 20/09/06 - Marcus - add DVRP library on nech
91	# 24/10/06 - Siggi - Environment variables for PALM steering are written
92	# on local NAMELIST file ENVPAR
93	# 24/11/06 - Siggi - levanto admitted, maestro switched to ifc 9.1
94	# 28/11/06 - Siggi - call to interpret_config.x_levanto because of SuSe 10
95	# 06/02/07 - Siggi - add DVRP library on lcmuk
96	# 07/02/07 - Siggi - revision of source code handling, source code is
97	# now expected in directory given by source_path and
98	# not in the current working directory, source code
99	# files provided in add_source_path are allways
100	# compiled, source code to be compiled is allways
101	# sampled in SOURCES_FOR_RUN_$fname which is a
102	# subdirectory of the current working directory,
103	# -s TEST changed to -s WRITE_PERMIT or -s WP,
104	# adapted for RIAM (neck)
105	# bugfix for cycle number of output file (extout)
106	# all hpmuk-related code removed
107	# 14/02/07 - Siggi - dvrp support for neck added
108	# 28/02/07 - Siggi - empty lines in configuration file are accepted
109	# mrun_path replaced by PALM_BIN,
110	# all machines are calling interpret_config.x
111	# 14/03/07 - Siggi - fimm admitted, revision number added to terminal
112	# output
113	# 16/03/07 - Siggi - adjustments for lctit
114	# 29/03/07 - Siggi - global revision transfered to batch job by new
115	# option -G
116	# 30/03/07 - Siggi - compilation "by hand" removed, cpp-directives/options
117	# + netcdf/dvrp-options are read from configuration
118	# file, host identifier (local_host) is read from
119	# config file, code related to ftp filetransfer
120	# removed (incl. option -f)
121	# 19/06/07 - Siggi - time limit for cdata jobs increased
122	# 25/07/07 - Siggi - two sets of executables can be started on lcmuk,
123	# if new option -Y (coupling) is given,
124	# output of executables to aout_output removed,
125	# messages are immediately written to stdout instead
126	# 03/08/07 - Marcus - add XOPT="-X $numprocs" for lcfimm
127	# 09/08/07 - Marcus - workaround on lcfimm to propagate environment
128	# variables out to the nodes in coupled mode -disabled-
129	# 13/08/07 - Marcus - start local restart jobs per ssh on lcfimm
130	# 28/08/07 - Marcus - completely remove workaround on lcfimm to propagate
131	# environment variables out to the nodes in coupled mode
132	# 15/10/07 - Siggi - Preliminary adjustments for lctit, based on Jin's
133	# suggestions
134	# 19/10/07 - Marcus - further adjustments for lctit: add new optional
135	# argument -g group_number, admit all sla* node_usage
136	# queues
137	# 30/10/07 - Marcus - further adjustments for queues on lctit
138	# 14/02/08 - Bjoern - link of restart files with long file name possible
139	# 28/02/08 - Marcus - If environment variable link_local_output is set to
140	# true, mrun tries "ln -f" on local output and resorts
141	# to "cp" or "cp -r" on error
142	# 15/04/08 - Siggi - argument -c introduced to most of the subjob calls,
143	# which allows the user to choose his own job catalog
144	# by setting job_catalog in the configuration file
145	# (default is ~/job_queue),
146	# workaround for mpiexec with -env option,
147	# adjustments for lcxt4 (Bergen Center for Computational
148	# Science)
149	# 22/05/08 - Marcus - If environment variable link_local_input is set to
150	# true, mrun tries "ln -f" on local input and resorts
151	# to "cp" or "cp -r" on error
152	# 27/05/08 - Siggi - PATH is set to PALM_BIN everywhere (missing so far)
153	# 14/07/08 - Siggi - adjustments for lcsgih
154	# 08/08/08 - Marcus - typo removed in lcxt4 branch
155	# 17/09/08 - Siggi - restart mechanism adjusted for lcsgi
156	# 02/10/08 - BjornM - argument "-Y" modified, adjustments for coupled runs
157	# 21/10/08 - Siggi - bugfix for the case that -K has more than one
158	# argument
159	# 08/11/08 - Siggi - bugfix for depository path settings in configuration
160	# file
161	# 11/11/08 - Siggi - rules for using user code files changed: user
162	# code splitted into one file per subroutine,
163	# user can provide his/her own makefile, only
164	# default source-code filenames are allowed
165	# 14/11/08 - Siggi - cond1 and cond2 are part of the depository name
166	# 08/01/09 - Siggi - mpi module on sgi machines to be used can be set
167	# with environment variable mpilib
168	# 13/01/09 - Siggi - totalview on hice/bice can be used in debug mode
169	# using environment variable totalview
170	# 25/02/09 - Siggi - cputime-option (-t) is allowed to be omitted for
171	# interactive runs
172	# 05/03/09 - Siggi - adjustments for new NEC-SX9 at RIAM (necriam)
173	# 16/03/09 - Siggi - dvrp_lib, dvrp_inc replaced by dvr_lib, dvr_inc,
174	# dvr streaming server is automatically started using
175	# new variable dvr_server and a configuration file
176	# .dvrserver.config,
177	# processing of dvr output files using new script
178	# process_dvr_output implemented, in order to make
179	# dvr application more user friendly
180	# 20/03/09 - Marcus - update of n1ge command for lctit
181	# 16/04/09 - Siggi - new option -y for precursor (uncoupled) ocean runs
182	# to be followed by a coupled atmosphere-ocean run
183	# 21/04/09 - Siggi - adjustments for new IBM at DKRZ, which is now ibmh
184	# 24/06/09 - BjornM - adjustments for coupled/precursor runs on ibmy
185	# 08/07/09 - Siggi - default value for email_notification is none,
186	# option -e added to subjob
187	# 19/08/09 - Marcus - MPI debug option
188	# 21/08/09 - Marcus - totalview on hice/bice also available for mvapich2
189	# 25/08/09 - BjornM - adpated for lck
190	# 26/08/09 - Siggi - additional environment variables for mpt on ice2
191	# 26/08/09 - Marcus - adjustment for ice2 on lcsgib
192	# 29/09/09 - Siggi - default value for archiving is false, option "-A"
193	# switches on archiving, archiving on SGI-ICE enabled
194	# 16/10/09 - Carolin - adjustments for archiving on SGI-ICE of binary files;
195	# adjustment for special1q
196
197
198	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
199
200	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
201	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
202	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
203
204	AddFilenames=""
205	additional_conditions=""
206	add_source_path=""
207	afname=""
208	archive_save=true
209	archive_system=none
210	compiler_name=""
211	cond1=""
212	cond2=""
213	config_file=.mrun.config
214	coupled_dist=""
215	coupled_mode="mpi1"
216	cpp_opts=""
217	cpp_options=""
218	cpumax=0
219	cpurest=0
220	delete_temporary_catalog=true
221	do_batch=false
222	do_compile=true
223	do_remote=false
224	do_stagein=true
225	do_stageout=true
226	do_trace=false
227	email_notification="none"
228	exclude=""
229	executable=""
230	execution_error=false
231	fimm=false
232	fname=test
233	fromhost=""
234	global_revision=""
235	group_number=none
236	host=""
237	host_file=""
238	hp=""
239	ignore_archive_error=false
240	input_list=""
241	interpreted_config_file=""
242	job_catalog="~/job_queue"
243	job_on_file=""
244	keep_data_from_previous_run=false
245	link_local_input=false
246	link_local_output=false
247	localhost_realname=$(hostname)
248	local_compile=false
249	local_dvrserver_running=.FALSE.
250	locat=normal
251	mainprog=""
252	makefile=""
253	mc=$0
254	while [[ $(echo $mc \| grep -c "/") != 0 ]]
255	do
256	mc=`echo $mc \| cut -f2- -d"/"`
257	done
258	module_files=""
259	mrun_script_name=$mc
260	netcdf_inc=""
261	netcdf_lib=""
262	netcdf_support=false
263	node_usage=default
264	numprocs=""
265	numprocs_atmos=0
266	numprocs_ocean=0
267	OOPT=""
268	openmp=false
269	output_list=""
270	package_list=""
271	punkte="..........................................................."
272	queue=none
273	read_from_config=""
274	restart_run=false
275	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
276	if [[ $return_addres = 130.75.105.158 ]]
277	then
278	return_addres=172.20.25.41
279	echo "+++ WARNING: return_addres changed to $return_addres !!!!!"
280	fi
281	return_password=""
282	return_username=$LOGNAME
283	remotecall=false
284	remote_username=""
285	run_coupled_model=false
286	run_mode=""
287	scirocco=false
288	store_on_archive_system=false
289	striche=" ----------------------------------------------------------------------------"
290	silent=false
291	source_list=""
292	source_path=SOURCE
293	tasks_per_node=""
294	threads_per_task=1
295	tmpcreate=false
296	tmp_data_catalog=""
297	transfer_problems=false
298	usern=$LOGNAME
299	use_openmp=false
300	working_directory=`pwd`
301	TOPT=""
302	XOPT=""
303	zeit=$( date \| cut -c 12-19 )
304
305	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
306	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
307
308	typeset -R30 calltime
309	typeset -L20 spalte1
310	typeset -L40 spalte2
311	typeset -L60 spalte3
312	typeset -L35 string1=`date`
313	typeset -L12 string2=$usern
314	typeset -L12 string3=$localhost_realname
315	typeset -L12 string4
316	typeset -L12 string5
317	typeset -L30 version="MRUN 2.0 Rev$Rev: 405 $"
318
319
320
321	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
322	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
323
324	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
325	# EXPORTIERT WERDEN
326	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
327	export group_number input_list memory numprocs output_list queue run_mode
328
329
330
331	# FEHLERBEHANDLUNG
332	# BEI EXIT:
333	trap 'rm -rf $working_directory/tmp_mrun
334	if [[ $locat != localhost ]]
335	then
336	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
337	# then
338	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
339	#MRUN-calls on $localhost
340	#
341	#date and time user localhost remotehost termination mrun-command
342	#--------------------------------------------------------------------------------------------------------------------
343	#%STATEND%
344	# chmod 666 ${mrun_path}/statistik/mrun_statistik
345	# fi
346	#
347	# # EINTRAG IN DIE STATISTIK-DATEI
348	# string4=$host
349	# string5=$locat
350	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
351	# then
352	# if [[ $do_batch = true ]]
353	# then
354	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
355	# else
356	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
357	# fi
358	# fi
359	echo " " > /dev/null
360	fi
361
362	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
363	then
364
365	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
366	(( i = 0 ))
367	while (( i < iec ))
368	do
369	(( i = i + 1 ))
370	printf "\n *** Execution of ERROR-command:\n"
371	printf " >>> ${err_command[$i]}\n"
372	eval ${err_command[$i]}
373	done
374	if [[ -n $interpreted_config_file ]] then
375	rm -rf $interpreted_config_file
376	fi
377	if [[ -n .mrun_environment ]] then
378	rm -rf .mrun_environment
379	fi
380	if [[ $tmpcreate = true ]]
381	then
382	printf "\n *** Contents of \"$TEMPDIR\":\n"
383	ls -al; cd
384	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
385	fi
386	if [[ "$dvrserver_id" != "" ]]
387	then
388	echo "+++ killing dvrserver_id=$dvrserver_id"
389	kill $dvrserver_id
390	fi
391	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
392	then
393	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
394	fi
395	printf "\n\n+++ MRUN killed \n\n"
396	elif [[ $locat != control_c ]]
397	then
398	printf "\n\n --> all actions finished\n\n"
399	printf " Bye, bye $usern !!\n\n"
400	fi' exit
401
402
403	# BEI TERMINAL-BREAK:
404	trap 'rm -rf $working_directory/tmp_mrun
405	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
406	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
407	then
408	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
409	fi
410	if [[ "$dvrserver_id" != "" ]]
411	then
412	echo "+++ killing dvrserver_id=$dvrserver_id"
413	kill $dvrserver_id
414	fi
415	printf "\n+++ MRUN killed by \"^C\" \n\n"
416	locat=control_c
417	exit
418	' 2
419
420
421	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
422	# BEEN SET
423	if [[ "$PALM_BIN" = "" ]]
424	then
425	printf "\n +++ environment variable PALM_BIN has not been set"
426	printf "\n please set it to the directory where the PALM scripts are located"
427	locat=palm_bin; exit
428	fi
429	export PATH=$PALM_BIN:$PATH
430
431
432
433	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
434	# FUER FOLGEJOBS BENOETIGT WIRD
435	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:Op:P:q:r:R:s:St:T:u:U:vxX:yY: option
436	do
437	case $option in
438	(a) afname=$OPTARG;;
439	(A) store_on_archive_system=true; mc="$mc -A";;
440	(b) do_batch=true; mc="$mc -b";;
441	(B) delete_temporary_catalog=false; mc="$mc -B";;
442	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
443	(C) restart_run=true; mc="$mc -C";;
444	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
445	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
446	(F) job_on_file="-D"; mc="$mc -F";;
447	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
448	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
449	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
450	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
451	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
452	(I) ignore_archive_error=true; mc="$mc -I";;
453	(k) keep_data_from_previous_run=true; mc="$mc -k";;
454	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
455	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
456	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
457	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
458	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
459	(O) use_openmp=true; mc="$mc -O";;
460	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
461	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
462	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
463	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
464	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
465	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
466	(S) read_from_config=false; mc="$mc -S";;
467	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
468	(T) tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
469	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
470	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
471	(v) silent=true; mc="$mc -v";;
472	(x) do_trace=true;set -x; mc="$mc -x";;
473	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
474	(y) ocean_file_appendix=true; mc="$mc -y";;
475	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
476	(\?) printf "\n +++ unknown option $OPTARG \n"
477	printf "\n --> type \"$0 ?\" for available options \n"
478	locat=parameter;exit;;
479	esac
480	done
481
482
483	# EVTL. POSITIONSPARAMETER EINLESEN
484	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
485	shift OPTIND-1
486
487
488	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
489	if [[ "$1" = "?" ]]
490	then
491	(printf "\n *** mrun can be called as follows:\n"
492	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. <modus>\n"
493	printf "\n Description of available options:\n"
494	printf "\n Option Description Default-Value"
495	printf "\n -a base name of input files equiv. -d"
496	printf "\n -A archiving when using file-attribute fl"
497	printf "\n -b batch-job on local machine ---"
498	printf "\n -B do not delete temporary directory at end ---"
499	printf "\n -c configuration file .mrun.config"
500	printf "\n -d base name of files attached to program test"
501	printf "\n -D preprocessor(cpp)-directives \"\" "
502	printf "\n -F create remote job file only ---"
503	printf "\n -h execution host $localhost_realname"
504	printf "\n -i INPUT control list \"\" "
505	printf "\n -I archiving errors of previous batch-jobs"
506	printf "\n will be ignored"
507	printf "\n -k keep data from previous run"
508	printf "\n -K additional conditions for controling"
509	printf "\n usage of conditional code and"
510	printf "\n env-variables in configuration file \"\" "
511	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
512	printf "\n -M Makefile name Makefile"
513	printf "\n -n node usage (shared/not_shared) depending on -h"
514	printf "\n -o OUTPUT control list \"\" "
515	printf "\n -O use OpenMP ---"
516	printf "\n -p software package list \"\" "
517	printf "\n -q queue \"$queue\" "
518	printf "\n -r run control list (combines -i -o) \"\" "
519	printf "\n -s filenames of routines to be compiled \"\" "
520	printf "\n must end with .f, .f90, .F, or .c !"
521	printf "\n use \"..\" for more than one file and wildcards"
522	printf "\n -s TEST compiles all files with w-permit"
523	printf "\n -S config file interpreted by shellscript ---"
524	printf "\n -t allowed cpu-time in seconds (batch) 0"
525	printf "\n -T tasks per node depending on -h"
526	printf "\n -u username on remote machine \"\" "
527	printf "\n -v no prompt for confirmation ---"
528	printf "\n -x tracing of mrun for debug purposes ---"
529	printf "\n -X # of processors (on parallel machines) 1"
530	printf "\n -y add appendix \"_O\" to all local output"
531	printf "\n files (ocean precursor runs followed by"
532	printf "\n coupled atmosphere-ocean runs) ---"
533	printf "\n -Y run coupled model, \"#1 #2\" with"
534	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
535	printf "\n "
536	printf "\n Possible values of positional parameter <modus>:"
537	printf "\n \"?\" - this outline \n\n") \| more
538	exit
539	elif [[ "$1" != "" ]]
540	then
541	printf "\n +++ positional parameter $1 unknown \n"
542	locat=parameter; exit
543	fi
544
545
546
547	# KURZE STARTMELDUNG
548	printf "\n*** $version "
549	printf "\n will be executed. Please wait ..."
550
551
552
553	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
554	if [[ ! -f $config_file ]]
555	then
556	printf "\n\n +++ configuration file: "
557	printf "\n $config_file"
558	printf "\n does not exist"
559	locat=connect; exit
560	fi
561
562
563	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
564	line=""
565	grep "%host_identifier" $config_file > tmp_mrun
566	while read line
567	do
568	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
569	then
570	HOSTNAME=`echo $line \| cut -d" " -s -f2`
571	host_identifier=`echo $line \| cut -d" " -s -f3`
572	if [[ $localhost_realname = $HOSTNAME ]]
573	then
574	localhost=$host_identifier
575	break
576	fi
577	fi
578	done < tmp_mrun
579
580	if [[ "$localhost" = "" ]]
581	then
582	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
583	printf "\n for local host \"$localhost_realname\"."
584	printf "\n Please add line"
585	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
586	printf "\n to the configuration file."
587	locat=localhost; exit
588	fi
589
590
591	# HOSTSPEZIFISCHE VARIABLEN SETZEN
592	case $localhost_realname in
593	(r1\|r2\|h01\|b01) archive_system=tivoli;;
594	(cs*) archive_system=ut;;
595	(fimm.bccs.uib.no) fimm=true;;
596	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
597	(scirocco) scirocco=true;;
598	esac
599
600
601
602	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
603	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
604	[[ "$afname" = "" ]] && afname=$fname
605
606
607	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
608	if [[ "$run_mode" != "" ]]
609	then
610	input_list="$input_list $run_mode"
611	output_list="$output_list $run_mode"
612	fi
613
614
615	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
616	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
617	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
618	# STARTET)
619	if [[ "$fromhost" = "" ]]
620	then
621	fromhost=$localhost
622	fi
623
624
625	# PRUEFEN, OB MRUN NUR TESTWEISE AUF DER LOKALEN MASCHINE KOMPILIEREN SOLL
626	if [[ "$source_list" = LOCAL_COMPILE_TEST ]]
627	then
628	source_list=TEST
629	local_compile=true
630	host=$localhost
631	fi
632
633
634	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
635	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
636	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
637	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
638	if [[ -n $host && "$host" != $localhost ]]
639	then
640	do_batch=true
641	do_remote=true
642	case $host in
643	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|nech\|necriam\|lcsgib\|lcsgih\|lctit\|unics\|lcxt4\|lck) true;;
644	(*) printf "\n"
645	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
646	printf "\n is not available"
647	locat=nqs; (( iec = 0 )); exit;;
648	esac
649	else
650	host=$localhost
651	fi
652
653
654	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
655	if [[ -n $additional_conditions ]]
656	then
657	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
658	cond1=`echo $additional_conditions \| cut -d" " -f1`
659	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
660	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
661	if [[ -n $dummy ]]
662	then
663	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
664	locat=options; exit
665	fi
666	fi
667
668
669	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
670	if [[ $run_coupled_model = true ]]
671	then
672
673	if [[ -n $coupled_dist ]]
674	then
675
676	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
677	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
678
679	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
680	then
681
682	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
683	printf "\n PEs (total) : $numprocs"
684	printf "\n PEs (atmosphere): $numprocs_atmos"
685	printf "\n PEs (ocean) : $numprocs_ocean"
686	locat=coupling; exit
687
688	# REARRANGING BECAUSE CURRENTLY ONLY 1:1 TOPOLOGIES ARE SUPPORTED
689	# THIS SHOULD BE REMOVED IN FUTURE
690	elif (( $numprocs_ocean != $numprocs_atmos ))
691	then
692
693	printf "\n +++ currently only 1:1 topologies are supported"
694	printf "\n PEs (total) : $numprocs"
695	printf "\n PEs (atmosphere): $numprocs_atmos"
696	printf "\n PEs (ocean) : $numprocs_ocean"
697	(( numprocs_atmos = $numprocs / 2 ))
698	(( numprocs_ocean = $numprocs / 2 ))
699	printf "\n +++ rearranged topology to $numprocs_atmos:$numprocs_ocean"
700
701	fi
702
703	else
704
705	(( numprocs_ocean = $numprocs / 2 ))
706	(( numprocs_atmos = $numprocs / 2 ))
707
708	fi
709	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
710
711	# GET coupled_mode FROM THE CONFIG FILE
712	line=""
713	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
714	while read line
715	do
716	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && ( $(echo $line \| cut -d" " -s -f4) = $cond1 \|\| $(echo $line \| cut -d" " -s -f4) = $cond2 ) ]]
717	then
718	coupled_mode="mpi2"
719	fi
720	done < tmp_mrun
721
722	fi
723
724
725	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
726	# ARCHIVIERUNG FEHLGESCHLAGEN IST
727	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
728	then
729	if [[ $ignore_archive_error = false ]]
730	then
731	printf "\n +++ data archiving of previous run failed"
732	printf "\n see directory \~/job_queue on remote machine"
733	locat=archive; exit
734	else
735	printf "\n +++ warning: data archiving in a previous run failed"
736	printf "\n MRUN continues, trying to get backup copy"
737	fi
738	fi
739
740
741
742	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
743	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
744	if [[ "$read_from_config" = false ]]
745	then
746
747	[[ $silent = false ]] && printf "\n Reading the configuration file... "
748	while read zeile
749	do
750	[[ $silent = false ]] && printf "."
751
752
753	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
754	# ERSETZEN
755	eval zeile=\"$zeile\"
756
757
758	# INTERPRETATION DER ZEILE
759	if [[ "$(echo $zeile)" = "" ]]
760	then
761	# LEERZEILE, KEINE AKTION
762	continue
763
764	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
765	then
766
767	# ZEILE IST KOMMENTARZEILE
768	true
769
770	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
771	then
772
773	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
774	zeile=$(echo $zeile \| cut -c2-)
775	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
776	var=`echo $zeile \| cut -d" " -f1`
777	value=`echo $zeile \| cut -d" " -s -f2`
778	for_host=`echo $zeile \| cut -d" " -s -f3`
779	for_cond1=`echo $zeile \| cut -d" " -s -f4`
780	for_cond2=`echo $zeile \| cut -d" " -s -f5`
781
782	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
783	then
784
785	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
786	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
787	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
788
789
790	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
791	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
792	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
793	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
794	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
795	# KONFIGURATIONSDATEI
796	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
797	then
798	eval $var=\$value
799
800	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
801	if [[ $do_trace = true ]]
802	then
803	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
804	fi
805	fi
806
807	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
808	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
809	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
810	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
811	if [[ $var = host ]]
812	then
813	if [[ -n $host && "$host" != $localhost ]]
814	then
815	do_batch=true
816	do_remote=true
817	case $host in
818	(ibm\|ibms\|ibmy\|lcsgib\|lcsgih\|lctit\|nech\|necriam\|unics\|lcxt4\|lck) true;;
819	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
820	printf "\n is not available"
821	locat=nqs; exit;;
822	esac
823	else
824	host=$localhost
825	fi
826	fi
827
828	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
829	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
830	# DEN PROGRAMMEN BENOETIGT WERDEN
831	export $var
832	fi
833
834
835
836
837	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
838	then
839
840	# ZEILE DEFINIERT ERROR-KOMMANDO
841	(( iec = iec + 1 ))
842	zeile=$(echo $zeile \| cut -c4-)
843	err_command[$iec]="$zeile"
844
845	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
846	then
847
848	# ZEILE DEFINIERT INPUT-KOMMANDO
849	(( iic = iic + 1 ))
850	zeile=$(echo $zeile \| cut -c4-)
851	in_command[$iic]="$zeile"
852
853	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
854	then
855
856	# ZEILE DEFINIERT OUTPUT-KOMMANDO
857	(( ioc = ioc + 1 ))
858	zeile=$(echo $zeile \| cut -c4-)
859	out_command[$ioc]="$zeile"
860
861	else
862
863	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
864	# s2a: in/out - Feld
865	# s2b: loc - Feld (optional)
866	# s2c: tr/ar - Feld (optional)
867	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
868	s1=`echo $zeile \| cut -d" " -f1`
869	s2=`echo $zeile \| cut -d" " -s -f2`
870	s2a=$(echo $s2 \| cut -d":" -f1)
871	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
872	then
873	s2b=""
874	s2c=""
875	else
876	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
877	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
878	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
879	fi
880	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
881	s3=`echo $zeile \| cut -d" " -f3`
882	s4=`echo $zeile \| cut -d" " -s -f4`
883	s5=`echo $zeile \| cut -d" " -s -f5`
884	s6=`echo $zeile \| cut -d" " -s -f6`
885
886
887	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
888	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
889	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
890	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
891	# HANDEN SEIN MUSS (D.H. s2b = loc)
892	IFSALT="$IFS"; IFS="$IFS:"
893	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
894	then
895	found=false
896	for actual in $input_list
897	do
898	for formal in $s3
899	do
900	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
901	done
902	done
903	if [[ $found = true ]]
904	then
905	(( iin = iin + 1 ))
906	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
907	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
908	extin[$iin]=$s6
909	fi
910	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
911	then
912	found=false
913	for actual in $output_list
914	do
915	for formal in $s3
916	do
917	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
918	done
919	done
920	if [[ $found = true ]]
921	then
922	(( iout = iout + 1 ))
923	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
924	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
925	fi
926	elif [[ "$s2a" != in && "$s2a" != out ]]
927	then
928	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
929	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
930	locat=connect; exit
931	fi
932	IFS="$IFSALT"
933	fi
934	done < $config_file
935
936	else
937
938
939	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
940	[[ $silent = false ]] && printf "..."
941	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
942	export interpreted_config_file=.icf.$RANDOM
943
944
945
946	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
947	# VERFUEGUNG STELLEN
948	cat > .mrun_environment << %%END%%
949	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
950	config_file = '$config_file', do_remote = '$do_remote',
951	do_trace = '$do_trace', host = '$host',
952	input_list = '$input_list', icf = '$interpreted_config_file',
953	localhost = '$localhost', output_list = '$output_list' /
954
955	%%END%%
956
957	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
958	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
959	mrun_memory=$memory
960	mrun_group_number=$group_number
961	mrun_cpumax=$cpumax
962	mrun_numprocs=$numprocs
963
964	if [[ $localhost_realname = "sx-fep" ]]
965	then
966	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
967	else
968	interpret_config.x
969	fi
970	rm .mrun_environment
971
972
973	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
974	chmod u+x $interpreted_config_file
975	export PATH=$PATH:.
976	. $interpreted_config_file
977	rm $interpreted_config_file
978
979
980	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
981	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
982	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
983	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
984	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
985
986	fi
987
988
989	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
990	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
991	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
992	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
993	if [[ "$SOURCES_COMPLETE" = "" ]]
994	then
995
996	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
997	# VEREINBART WURDE
998	source_path=""
999	line=""
1000	grep "%source_path" $config_file > tmp_mrun
1001	while read line
1002	do
1003	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1004	then
1005	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
1006	then
1007	global_source_path=`echo $line \| cut -d" " -f2`
1008	fi
1009	fi
1010	done < tmp_mrun
1011
1012	line=""
1013	found=false
1014	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
1015	while read line
1016	do
1017	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1018	then
1019	if [[ $found = true ]]
1020	then
1021	printf "\n\n +++ more than one source path found in configuration file"
1022	printf "\n for local host \"$localhost\" "
1023	locat=source_path; exit
1024	fi
1025	source_path=`echo $line \| cut -d" " -f2`
1026	found=true
1027	fi
1028	done < tmp_mrun
1029	rm tmp_mrun
1030
1031	if [[ "$source_path" = "" ]]
1032	then
1033	if [[ "$global_source_path" != "" ]]
1034	then
1035	source_path=$global_source_path
1036	else
1037	printf "\n\n +++ no source path found in configuration file"
1038	printf "\n for local host \"$localhost\" "
1039	locat=source_path; exit
1040	fi
1041	fi
1042	eval source_path=$source_path
1043
1044	if [[ ! -d $source_path ]]
1045	then
1046	printf "\n\n +++ source path \"$source_path\" on local host"
1047	printf "\n \"$localhost\" does not exist"
1048	locat=source_path; exit
1049	fi
1050
1051	fi
1052
1053
1054	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
1055	# DURCH OPTION -G MITGETEILT)
1056	if [[ "$global_revision" = "" ]]
1057	then
1058	global_revision=`svnversion $source_path 2>/dev/null`
1059	global_revision="Rev: $global_revision"
1060	fi
1061
1062
1063	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
1064	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
1065	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
1066	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
1067	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
1068	if [[ -n $host && "$host" != $localhost ]]
1069	then
1070	do_batch=true
1071	do_remote=true
1072	case $host in
1073	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|lcsgib\|lcsgih\|lctit\|nech\|necriam\|unics\|lcxt4\|lck) true;;
1074	(*) printf "\n"
1075	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
1076	printf "\n is not available"
1077	locat=nqs; (( iec = 0 )); exit;;
1078	esac
1079	else
1080	host=$localhost
1081	fi
1082
1083
1084	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
1085	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1086	then
1087
1088	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
1089	if [[ ! -n $numprocs ]]
1090	then
1091	printf "\n"
1092	printf "\n +++ option \"-K parallel\" requires additional specification"
1093	printf "\n of the number of processors to be used by"
1094	printf "\n mrun-option \"-X\" or by environment-variable"
1095	printf "\n \"numprocs\" in the configuration file"
1096	locat=numprocs; (( iec = 0 )); exit
1097	fi
1098
1099	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
1100	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
1101	# GESAMTPROZESSORANZAHL IST
1102	if [[ $host = nech \|\| $host = necriam \|\| $host = ibmh \|\| $host = ibmb \|\| $host = ibms ]]
1103	then
1104	[[ "$tasks_per_node" = "" ]] && tasks_per_node=6
1105	(( ival = $tasks_per_node ))
1106	(( pes = numprocs ))
1107	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1108	# then
1109	# (( pes = pes - 1 ))
1110	# fi
1111	(( ii = pes / ival ))
1112	if (( pes - ii * ival > 0 ))
1113	then
1114	printf "\n"
1115	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1116	printf "\n divisor of the total number of processors (option \"-X\")"
1117	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1118	locat=tasks_per_node; (( iec = 0 )); exit
1119	fi
1120	fi
1121
1122	# IBMY HAT NUR EINEN KNOTEN
1123	if [[ $host = ibmy ]]
1124	then
1125	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1126	then
1127	printf "\n"
1128	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1129	printf "\n total number of processors (option \"-X\")"
1130	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1131	locat=tasks_per_node; (( iec = 0 )); exit
1132	fi
1133	fi
1134
1135	# FALLS OPENMP PARALLELISIERUNG VERWENDET WERDEN SOLL, ANZAHL VON THREADS
1136	# SETZEN UND ZAHL DER TASKS PRO KNOTEN AUF 1 SETZEN
1137	if [[ $use_openmp = true ]]
1138	then
1139	threads_per_task=$tasks_per_node
1140	tasks_per_node=1
1141	fi
1142
1143	# SETTINGS FOR SUBJOB-COMMAND
1144	if [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1145	then
1146	(( tp1 = tasks_per_node * threads_per_task ))
1147	TOPT="-T $tp1"
1148	else
1149	TOPT="-T $tasks_per_node"
1150	fi
1151	OOPT="-O $threads_per_task"
1152
1153	# GESAMTZAHL DER KNOTEN BESTIMMEN
1154	if [[ "$tasks_per_node" != "" ]]
1155	then
1156	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1157	fi
1158
1159	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1160	# SETZEN
1161	if [[ $node_usage = default ]]
1162	then
1163	if [[ $host = ibms ]]
1164	then
1165	node_usage=shared
1166	elif [[ $host = lctit ]]
1167	then
1168	node_usage=RAM64GB
1169	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1170	then
1171	node_usage=singlejob
1172	else
1173	node_usage=not_shared
1174	fi
1175	fi
1176
1177	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != RAM64GB ]]
1178	then
1179	printf "\n"
1180	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1181	printf "\n \"shared\" or \"not_shared\""
1182	locat=tasks_per_node; (( iec = 0 )); exit
1183	fi
1184
1185	fi
1186
1187	# PRUEFEN, OB HOSTFILE EXISTIERT
1188	if [[ -n $hostfile ]]
1189	then
1190	if [[ ! -f $hostfile ]]
1191	then
1192	printf "\n"
1193	printf "\n +++ hostfile \"$hostfile\" does not exist"
1194	locat=hostfile; exit
1195	fi
1196	fi
1197
1198	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1199	if [[ $host = ibmy && $do_remote = false ]]
1200	then
1201	if [[ ! -f $HOME/.rhosts ]]
1202	then
1203	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1204	printf "\n\n *** file:"
1205	printf "\n $HOME/.rhosts"
1206	printf "\n was created\n"
1207	fi
1208	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1209	then
1210	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1211	printf "\n\n *** file:"
1212	printf "\n $HOME/.rhosts"
1213	printf "\n was extended by the name of the current host\n"
1214	fi
1215	fi
1216
1217
1218
1219	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1220	if [[ $queue = none ]]
1221	then
1222	case $host in
1223	(ibmb) if [[ $node_usage = shared ]]
1224	then
1225	queue=cshare
1226	else
1227	queue=csolo
1228	fi;;
1229	(ibmh) queue=no_class;;
1230	(ibmy) queue=parallel;;
1231	(lcsgib) queue=bigq;;
1232	(lcsgih) queue=bigq;;
1233	(lctit) queue=RAM64GB;;
1234	(nech) queue=none;;
1235	(necriam) queue=SP;;
1236	(unics) queue=unics;;
1237	esac
1238	fi
1239
1240
1241	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1242	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1243	# ERMITTELN
1244	(( i = 0 ))
1245	while (( i < iin ))
1246	do
1247	(( i = i + 1 ))
1248	(( maxcycle = 0 ))
1249
1250	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1251	if [[ "${actionin[$i]}" = di ]]
1252	then
1253	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1254	# REM-MASCHINE AUSWERTEN
1255	eval filename=${pathin[$i]}/${endin[$i]}
1256	else
1257	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1258	# REM-MASCHINE AUSWERTEN
1259	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1260	fi
1261
1262	# PRUEFEN AUF VORHANDENSEIN
1263	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1264	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1265	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1266	then
1267	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1268	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1269	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1270	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1271	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1272	if [[ "${transin[$i]}" != "locopt" ]]
1273	then
1274	printf "\n\n +++ INPUT-file: "
1275	if [[ "${extin[$i]}" = "" ]]
1276	then
1277	printf "\n $filename"
1278	else
1279	printf "\n $filename.${extin[$i]}"
1280	fi
1281	printf "\n does not exist\n"
1282	locat=input; exit
1283	else
1284	transin[$i]="unavailable"
1285	fi
1286	else
1287
1288	# ZYKLUSNUMMER FESTSTELLEN
1289	ls -1 -d $filename > filelist 2>/dev/null
1290	ls -1 -d $filename.* >> filelist 2>/dev/null
1291	while read zeile
1292	do
1293	cycle=$(print $zeile \| cut -f2 -d".")
1294	if [[ "$cycle" = "$zeile" ]]
1295	then
1296	(( icycle = 0 ))
1297	elif [[ "$cycle" = "${extin[$i]}" ]]
1298	then
1299	(( icycle = 0 ))
1300	else
1301	(( icycle = $cycle ))
1302	fi
1303	if (( icycle > maxcycle ))
1304	then
1305	(( maxcycle = icycle ))
1306	file_to_be_used=$zeile
1307	fi
1308	done <filelist
1309	rm filelist
1310
1311	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1312	if (( maxcycle > 0 ))
1313	then
1314	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1315	then
1316	filename=${filename}.$maxcycle.${extin[$i]}
1317	else
1318	filename=${filename}.$maxcycle
1319	fi
1320	else
1321	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1322	then
1323	filename=${filename}.${extin[$i]}
1324	fi
1325	fi
1326
1327	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1328	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1329	absnamein[$i]=$filename
1330	if (( maxcycle > 0 ))
1331	then
1332	if [[ "${actionin[$i]}" = di ]]
1333	then
1334	frelin[$i]=${endin[$i]}.$maxcycle
1335	else
1336	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1337	fi
1338	else
1339	if [[ "${actionin[$i]}" = di ]]
1340	then
1341	frelin[$i]=${endin[$i]}
1342	else
1343	frelin[$i]=${afname}${endin[$i]}
1344	fi
1345	fi
1346
1347	fi
1348	done
1349
1350
1351	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1352	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1353	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1354	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1355	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1356	(( i = 0 ))
1357	while (( i < iout ))
1358	do
1359	(( i = i + 1 ))
1360	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1361	then
1362	if [[ "${actionout[$i]}" = tr ]]
1363	then
1364	actionout[$i]=""
1365	elif [[ "${actionout[$i]}" = trpe ]]
1366	then
1367	actionout[$i]=pe
1368	elif [[ "${actionout[$i]}" = tra ]]
1369	then
1370	actionout[$i]=a
1371	fi
1372	(( maxcycle = 0 ))
1373	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1374	eval catalogname=${pathout[$i]}
1375	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1376	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1377	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1378	then
1379
1380	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1381	if cat /dev/null > $filename
1382	then
1383	rm $filename
1384	else
1385
1386	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1387	if [[ ! -d $catalogname ]]
1388	then
1389	if mkdir -p $catalogname
1390	then
1391	printf "\n\n *** directory:"
1392	printf "\n $catalogname"
1393	printf "\n was created\n"
1394	else
1395	printf "\n\n +++ OUTPUT-file:"
1396	printf "\n $filename"
1397	printf "\n cannot be created, because directory does not exist"
1398	printf "\n and cannot be created either"
1399	printf "\n"
1400	locat=output ; exit
1401	fi 2>/dev/null
1402	else
1403	printf "\n\n +++ OUTPUT-file:"
1404	printf "\n $filename"
1405	printf "\n cannot be created, although directory exists"
1406	printf "\n"
1407	locat=output ; exit
1408	fi
1409	fi 2>/dev/null
1410	else
1411
1412	# ZYKLUSNUMMER FESTSTELLEN
1413	ls -1 -d $filename > filelist 2>/dev/null
1414	ls -1 -d $filename.* >> filelist 2>/dev/null
1415	while read zeile
1416	do
1417	cycle=$(print $zeile \| cut -f2 -d".")
1418	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1419	then
1420	(( icycle = 1 ))
1421	else
1422	(( icycle = $cycle + 1 ))
1423	fi
1424	if (( icycle > maxcycle ))
1425	then
1426	(( maxcycle = icycle ))
1427	fi
1428	done <filelist
1429	rm filelist
1430	fi
1431
1432	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1433	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1434	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1435	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1436	if [[ "${actionout[$i]}" != a ]]
1437	then
1438	if (( maxcycle > 0 ))
1439	then
1440	filename=${filename}.$maxcycle
1441	if cat /dev/null > $filename
1442	then
1443	rm $filename
1444	else
1445	printf "\n +++ OUTPUT-file:"
1446	printf "\n $filename"
1447	printf "\n cannot be created"
1448	locat=output ; exit
1449	fi
1450	fi
1451	else
1452	(( maxcycle = maxcycle - 1 ))
1453	if (( maxcycle > 0 ))
1454	then
1455	filename=${filename}.$maxcycle
1456	fi
1457	fi
1458
1459	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1460	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1461	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1462	pathout[$i]=$filename
1463	if (( maxcycle > 0 ))
1464	then
1465	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1466	else
1467	frelout[$i]=${fname}${endout[$i]}
1468	fi
1469
1470	fi
1471	done
1472
1473
1474	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1475	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1476	then
1477	if [[ "$dvr_inc" = "" ]]
1478	then
1479	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1480	printf "\n This is required for the dvrp_graphics package.\n"
1481	locat=dvr; exit
1482	fi
1483	if [[ "$dvr_lib" = "" ]]
1484	then
1485	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1486	printf "\n This is required for the dvrp_graphics package.\n"
1487	locat=dvr; exit
1488	fi
1489	fi
1490
1491
1492	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1493	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1494	# UEBERSETZT ZU WERDEN)
1495	if [[ "$mainprog" = "" && "$executable" = "" ]]
1496	then
1497	printf "\n +++ neither main program nor executable defined"
1498	locat=source; exit
1499	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1500	then
1501	printf "\n +++ main program as well as executable defined"
1502	locat=source; exit
1503	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1504	then
1505	do_compile=false
1506	fi
1507
1508
1509	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1510	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1511	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1512	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1513	then
1514	rm -rf SOURCES_FOR_RUN_$fname
1515	mkdir SOURCES_FOR_RUN_$fname
1516	fi
1517
1518
1519	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1520	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1521	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1522	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1523	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1524	then
1525
1526	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1527	[[ "$source_list" = WP ]] && source_list=WRITE_PERMIT
1528
1529
1530	# EVTL. ZU UEBERSETZENDE PROGRAMMTEILE DADURCH BESTIMMEN, DASS GEPRUEFT
1531	# WIRD, WELCHE DATEIEN WRITE-PERMIT BESITZEN (DATEIEN SOLLTEN DESHALB
1532	# UNTER RCS-KONTROLLE STEHEN). MIT DER VARIABLEN EXCLUDE KOENNEN
1533	# BESTIMMTE DATEIEN GRUNDSAETZLICH VON DER UEBERSETZUNG AUSGESCHLOSSEN
1534	# WERDEN. DIES IST NUR BEI MANUELLEM START VON MRUN DURCH DEN BENUTZER
1535	# MOEGLICH, DA BEI AUTOMATISCHEN RESTARTS TEST DURCH DIE TATSAECHLICH
1536	# ZU UBERSETZENDEN DATEIEN ERSETZT IST.
1537	# ALLE ERMITTELTEN DATEIEN WERDEN IM VERZEICHNIS SOURCES_FOR_RUN_...
1538	# GESAMMELT
1539	if [[ "$source_list" = WRITE_PERMIT ]]
1540	then
1541
1542	source_list=""
1543	cd $source_path
1544
1545
1546	# ALLE MOEGLICHEN QUELLCODEDATEIEN AUFLISTEN
1547	Names=$(ls -1 *.f90 2>&1)
1548	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && Filenames="$Names"
1549	Names=$(ls -1 *.F90 2>&1)
1550	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && Filenames="$Filenames $Names"
1551	Names=$(ls -1 *.F 2>&1)
1552	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && Filenames="$Filenames $Names"
1553	Names=$(ls -1 *.f 2>&1)
1554	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && Filenames="$Filenames $Names"
1555	Names=$(ls -1 *.c 2>&1)
1556	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && Filenames="$Filenames $Names"
1557
1558
1559	# DATEIEN MIT WRITE-PERMIT NACH SOURCES_FOR_RUN_... KOPIEREN
1560	for dateiname in $Filenames
1561	do
1562	if [[ -w $dateiname ]]
1563	then
1564	if [[ "$exclude" = "" \|\| $(echo $exclude \| grep -c $dateiname) = 0 ]]
1565	then
1566	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1567	source_list=$source_list"$dateiname "
1568	fi
1569	fi
1570	done
1571
1572	cd - > /dev/null
1573
1574
1575	elif [[ "$source_list" = LOCALLY_MODIFIED ]]
1576	then
1577
1578	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1579	source_list=""
1580	cd $source_path
1581
1582
1583	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1584	if [[ ! -d .svn ]]
1585	then
1586	printf "\n\n +++ source directory"
1587	printf "\n \"$source_path\" "
1588	printf "\n is not under control of \"subversion\"."
1589	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1590	fi
1591
1592
1593	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1594	Filenames=""
1595	svn status > tmp_mrun
1596	while read line
1597	do
1598	firstc=`echo $line \| cut -c1`
1599	if [[ $firstc = M \|\| $firstc = "?" ]]
1600	then
1601	Name=`echo "$line" \| cut -c8-`
1602	extension=`echo $Name \| cut -d. -f2`
1603	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1604	then
1605	Filenames="$Filenames "$Name
1606	fi
1607	fi
1608	done < tmp_mrun
1609
1610
1611	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1612	for dateiname in $Filenames
1613	do
1614	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1615	source_list=$source_list"$dateiname "
1616	done
1617
1618	cd - > /dev/null
1619
1620
1621	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1622	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1623	# VORHANDEN
1624	elif [[ "$source_list" != "" && $restart_run != true ]]
1625	then
1626
1627	cd $source_path
1628
1629	for filename in $source_list
1630	do
1631
1632	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1633	if [[ $(print $filename \| grep -c "/") != 0 ]]
1634	then
1635	printf "\n +++ source code file: $filename"
1636	printf "\n must not contain (\"/\") "
1637	locat=source; exit
1638	fi
1639
1640	if [[ ! -f $filename ]]
1641	then
1642	printf "\n +++ source code file: $filename"
1643	printf "\n does not exist"
1644	locat=source; exit
1645	else
1646	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1647	fi
1648
1649	done
1650
1651	cd - > /dev/null
1652
1653	fi
1654
1655
1656	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1657	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1658	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1659	if [[ $restart_run != true ]]
1660	then
1661
1662	if [[ ! -f "$source_path/$mainprog" ]]
1663	then
1664	printf "\n\n +++ main program: $mainprog"
1665	printf "\n does not exist in source directory"
1666	printf "\n \"$source_path\"\n"
1667	locat=source; exit
1668	else
1669	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1670	then
1671	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1672	source_list=${mainprog}" $source_list"
1673	fi
1674	fi
1675	fi
1676
1677
1678	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1679	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1680	if [[ "$restart_run" != true ]]
1681	then
1682	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1683	if [[ ! -f $makefile ]]
1684	then
1685	printf "\n +++ file \"$makefile\" does not exist"
1686	locat=make; exit
1687	else
1688	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1689	fi
1690	fi
1691
1692
1693	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1694	if [[ $restart_run != true && "$add_source_path" != "" ]]
1695	then
1696
1697	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1698	if [[ ! -d $add_source_path ]]
1699	then
1700	printf "\n\n +++ WARNING: additional source code directory"
1701	printf "\n \"$add_source_path\" "
1702	printf "\n does not exist or is not a directory."
1703	printf "\n No source code will be used from this directory!\n"
1704	add_source_path=""
1705	sleep 3
1706	else
1707
1708	cd $add_source_path
1709	found=false
1710
1711	Names=$(ls -1 *.f90 2>&1)
1712	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1713	Names=$(ls -1 *.F90 2>&1)
1714	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1715	Names=$(ls -1 *.F 2>&1)
1716	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1717	Names=$(ls -1 *.f 2>&1)
1718	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1719	Names=$(ls -1 *.c 2>&1)
1720	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1721
1722	cd - > /dev/null
1723	cd SOURCES_FOR_RUN_$fname
1724
1725	# COPY MAKEFILE IF EXISTING
1726	if [[ -f $add_source_path/Makefile ]]
1727	then
1728	printf "\n\n *** user Makefile from directory"
1729	printf "\n \"$add_source_path\" is used \n"
1730	sleep 1
1731	cp $add_source_path/Makefile .
1732	fi
1733
1734	for dateiname in $AddFilenames
1735	do
1736	if [[ -f $dateiname ]]
1737	then
1738	printf "\n +++ source code file \"$dateiname\" found in additional"
1739	printf "\n source code directory \"$add_source_path\" "
1740	printf "\n but was also given with option \"-s\" which means that it should be taken"
1741	printf "\n from directory \"$source_path\"."
1742	locat=source; exit
1743	fi
1744
1745	cp $add_source_path/$dateiname .
1746	source_list="$source_list $dateiname"
1747
1748	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1749	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1750	then
1751	printf "\n\n +++ user file \"$dateiname\" "
1752	printf "\n is not listed in Makefile \n"
1753	locat=source; exit
1754	else
1755
1756	# Default User-Interface von der Liste entfernen, falls Datei
1757	# ein User-Interface enthaelt
1758	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1759	# then
1760	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1761	# then
1762	# rm -rf user_interface.f90
1763	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1764	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1765	# printf "\n since a user-interface is found in file"
1766	# printf "\n \"$add_source_path/$dateiname\" \n"
1767	# sleep 3
1768	# else
1769	if [[ $found = false ]]
1770	then
1771	found=true
1772	printf "\n\n *** following user file(s) added to the"
1773	printf " files to be translated:\n "
1774	fi
1775	printf "$dateiname "
1776	sleep 0.5
1777	fi
1778	done
1779	[[ $found = true ]] && printf "\n"
1780	cd - > /dev/null
1781	fi
1782	fi
1783
1784
1785	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1786	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1787	if [[ $restart_run != true && -n $package_list ]]
1788	then
1789
1790	cd $source_path
1791
1792	for package in $package_list
1793	do
1794
1795	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1796
1797	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1798	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1799	# LIEFERT
1800	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1801
1802
1803	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1804	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1805	for source_list_name in $package_source_list
1806	do
1807	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1808	then
1809
1810	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1811	ending=`echo $source_list_name \| cut -f2 -d.`
1812	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1813	then
1814	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1815	source_list="$source_list $source_list_name"
1816	fi
1817	fi
1818	done
1819	done
1820
1821	cd - > /dev/null
1822	fi
1823
1824
1825	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1826	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1827	# if [[ "$restart_run" != true ]]
1828	# then
1829	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1830	# if [[ ! -f $makefile ]]
1831	# then
1832	# printf "\n +++ file \"$makefile\" does not exist"
1833	# locat=make; exit
1834	# else
1835	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1836	# fi
1837	# fi
1838
1839	fi # do_compile=true
1840
1841
1842	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1843	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1844	if [[ $do_compile = true ]]
1845	then
1846
1847	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1848	# ZUSAMMENSETZEN
1849	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1850	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1851	then
1852	cpp_options="${cpp_options},-D__ibm=__ibm"
1853	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1854	then
1855	cpp_options="$cpp_options -D__nec"
1856	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1857	then
1858	cpp_options="$cpp_options -D__lc"
1859	else
1860	cpp_options="$cpp_options -D__$localhost"
1861	fi
1862
1863	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1864	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1865	then
1866	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1867	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1868	else
1869	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1870	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1871	fi
1872
1873	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1874	if [[ -n $package_list ]]
1875	then
1876	for package in $package_list
1877	do
1878	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1879	then
1880	if [[ $package != "dvrp_graphics+1PE" ]]
1881	then
1882	cpp_options="${cpp_options},-D__$package=__$package"
1883	else
1884	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1885	export use_seperate_pe_for_dvrp_output=true
1886	fi
1887	else
1888	if [[ $package != "dvrp_graphics+1PE" ]]
1889	then
1890	cpp_options="$cpp_options -D__$package"
1891	else
1892	cpp_options="$cpp_options -D__dvrp_graphics"
1893	export use_seperate_pe_for_dvrp_output=true
1894	fi
1895	fi
1896	done
1897	fi
1898
1899	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1900	if [[ -n $cpp_opts ]]
1901	then
1902	for popts in $cpp_opts
1903	do
1904	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1905	then
1906	cpp_options="${cpp_options},-D__$popts=__$popts"
1907	else
1908	cpp_options="$cpp_options -D__$popts"
1909	fi
1910	done
1911	fi
1912
1913	else
1914
1915
1916	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1917	if [[ $do_remote = false ]]
1918	then
1919	if [[ ! -f $executable ]]
1920	then
1921	printf "\n +++ executable file: $executable"
1922	printf "\n does not exist"
1923	locat=executable; exit
1924	fi
1925	fi
1926	fi
1927
1928
1929	# JOBMODUS FESTSTELLEN
1930	if [[ "$ENVIRONMENT" = BATCH && $localhost != lctit \|\| "$QUEUE" != interactive && $localhost = lctit ]]
1931	then
1932	jobmo=BATCH
1933	else
1934	jobmo=INTERACTIVE
1935	fi
1936
1937
1938	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1939	# DURCH BENUTZER ANDERWEITIG VEREINBART
1940	if [[ "$compiler_name" = "" ]]
1941	then
1942
1943	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
1944	locat=compiler_name; exit
1945
1946	fi
1947
1948
1949	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
1950	[[ $localhost = necriam ]] && compiler_name=mpif90
1951
1952
1953
1954	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
1955	kennung=$RANDOM
1956	if [[ "$tmp_user_catalog" = "" ]]
1957	then
1958	if [[ $localhost = ibmh ]]
1959	then
1960	tmp_user_catalog=$SCRATCH
1961	elif [[ $localhost = nech ]]
1962	then
1963	tmp_user_catalog=$WRKSHR
1964	else
1965	tmp_user_catalog=/tmp
1966	fi
1967	fi
1968	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
1969
1970
1971	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
1972	# BESTIMMEN
1973	if [[ "$tmp_data_catalog" = "" ]]
1974	then
1975	if [[ $localhost = ibmb ]]
1976	then
1977	tmp_data_catalog=$WORK/mrun_restart_data
1978	elif [[ $localhost = nech ]]
1979	then
1980	tmp_data_catalog=$WRKSHR/mrun_restart_data
1981	else
1982	tmp_data_catalog=/tmp/mrun_restart_data
1983	fi
1984	fi
1985
1986
1987	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
1988	# ERSETZEN
1989	if [[ $do_remote = false && $do_compile = true ]]
1990	then
1991	eval fopts=\"$fopts\"
1992	eval lopts=\"$lopts\"
1993	fi
1994
1995
1996
1997	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
1998	fopts="$fopts $netcdf_inc $dvr_inc"
1999	lopts="$lopts $netcdf_lib $dvr_lib"
2000	ROPTS="$ropts"
2001	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxt4 \|\| $host = lck ) && -n $numprocs ]]
2002	then
2003	XOPT="-X $numprocs"
2004	fi
2005
2006
2007
2008	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
2009	# GRAMM BENOETIGT
2010	done=false
2011	while [[ $done = false ]]
2012	do
2013	cputime=$cpumax
2014	if (( $cputime == 0 ))
2015	then
2016	if [[ $do_batch = true ]]
2017	then
2018	printf "\n +++ cpu-time is undefined"
2019	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
2020	printf "\n >>> "
2021	read cputime 1>/dev/null 2>&1
2022	else
2023	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
2024	fi
2025	else
2026	done=true
2027	fi
2028	cpumax=$cputime
2029	done
2030
2031	(( minuten = cputime / 60 ))
2032	(( sekunden = cputime - minuten * 60 ))
2033
2034
2035	# PRUEFEN DER KERNSPEICHERANFORDERUNG
2036	if [[ $do_batch = true ]]
2037	then
2038	done=false
2039	while [[ $done = false ]]
2040	do
2041	if (( memory == 0 ))
2042	then
2043	printf "\n +++ memory demand is undefined"
2044	printf "\n >>> Please type memory in MByte per process as INTEGER:"
2045	printf "\n >>> "
2046	read memory 1>/dev/null 2>&1
2047	else
2048	done=true
2049	fi
2050	done
2051	fi
2052
2053
2054	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
2055	if [[ $do_remote = true && -z $remote_username ]]
2056	then
2057	while [[ -z $remote_username ]]
2058	do
2059	printf "\n +++ username on remote host \"$host\" is undefined"
2060	printf "\n >>> Please type username:"
2061	printf "\n >>> "
2062	read remote_username
2063	done
2064	mc="$mc -u$remote_username"
2065	fi
2066
2067
2068	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
2069	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2070	then
2071	[[ "$mpilib" = "" ]] && export mpilib=mpt
2072	fi
2073
2074
2075
2076	###########################################################################
2077	# HEADER-AUSGABE
2078	###########################################################################
2079
2080
2081	calltime=$(date)
2082	printf "\n"
2083	# [[ $silent = false ]] && clear
2084	printf "#--------------------------------------------------------------# \n"
2085	printf "\| $version$calltime \| \n"
2086	printf "\| \| \n"
2087	spalte1="called on:"; spalte2=$localhost_realname
2088	printf "\| $spalte1$spalte2 \| \n"
2089	if [[ $local_compile = false ]]
2090	then
2091	if [[ $do_remote = true ]]
2092	then
2093	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2094	else
2095	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2096	fi
2097	else
2098	spalte1="compiling test only!"; spalte2=""
2099	fi
2100	printf "\| $spalte1$spalte2 \| \n"
2101	if [[ -n $numprocs ]]
2102	then
2103	spalte1="number of PEs:"; spalte2=$numprocs
2104	printf "\| $spalte1$spalte2 \| \n"
2105	fi
2106	if [[ -n $tasks_per_node ]]
2107	then
2108	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2109	printf "\| $spalte1$spalte2 \| \n"
2110	fi
2111	if [[ $threads_per_task != 1 ]]
2112	then
2113	spalte1="threads per task:"; spalte2="$threads_per_task"
2114	printf "\| $spalte1$spalte2 \| \n"
2115	fi
2116	printf "\| \| \n"
2117	if [[ $do_compile = true ]]
2118	then
2119	spalte1=cpp-directives:; spalte2=$cpp_options
2120	printf "\| $spalte1$spalte2 \| \n"
2121	zeile=$(echo "$cpp_options" \| cut -c41-)
2122	while [[ "$zeile" != "" ]]
2123	do
2124	spalte1=""
2125	spalte2=$zeile
2126	printf "\| $spalte1$spalte2 \| \n"
2127	zeile=$(echo "$zeile" \| cut -c41-)
2128	done
2129
2130	spalte1=compiler-options:; spalte2="$fopts"
2131	printf "\| $spalte1$spalte2 \| \n"
2132	zeile=$(echo "$fopts" \| cut -c41-)
2133	while [[ "$zeile" != "" ]]
2134	do
2135	spalte1=""
2136	spalte2=$zeile
2137	printf "\| $spalte1$spalte2 \| \n"
2138	zeile=$(echo "$zeile" \| cut -c41-)
2139	done
2140
2141	spalte1=linker-options:; spalte2=$lopts
2142	printf "\| $spalte1$spalte2 \| \n"
2143	zeile=$(echo "$lopts" \| cut -c41-)
2144	while [[ "$zeile" != "" ]]
2145	do
2146	spalte1=""
2147	spalte2=$zeile
2148	printf "\| $spalte1$spalte2 \| \n"
2149	zeile=$(echo "$zeile" \| cut -c41-)
2150	done
2151
2152	spalte1="main program":; spalte2=$mainprog
2153	printf "\| $spalte1$spalte2 \| \n"
2154	else
2155	spalte1=executable:; spalte2=$executable
2156	printf "\| $spalte1$spalte2 \| \n"
2157	fi
2158	printf "\| \| \n"
2159	spalte1="base name of files":; spalte2=$fname
2160	printf "\| $spalte1$spalte2 \| \n"
2161	if [[ $fname != $afname ]]
2162	then
2163	spalte1="base name of input files":; spalte2=$afname
2164	printf "\| $spalte1$spalte2 \| \n"
2165	fi
2166	spalte1="INPUT control list":; spalte2=$input_list
2167	printf "\| $spalte1$spalte2 \| \n"
2168	spalte1="OUTPUT control list":; spalte2=$output_list
2169	printf "\| $spalte1$spalte2 \| \n"
2170
2171	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2172	then
2173	spalte1="memory demand / PE":; spalte2="$memory MB"
2174	printf "\| $spalte1$spalte2 \| \n"
2175	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2176	printf "\| $spalte1$spalte2 \| \n"
2177	fi
2178
2179	if [[ $do_compile = true ]]
2180	then
2181	printf "\| \| \n"
2182	printf "\| Files to be compiled: \| \n"
2183	zeile=$source_list
2184	while [[ "$zeile" != "" ]]
2185	do
2186	spalte3=$zeile
2187	printf "\| $spalte3 \| \n"
2188	zeile=$(echo "$zeile" \| cut -c61-)
2189	done
2190	fi
2191	printf "#--------------------------------------------------------------#"
2192
2193
2194
2195	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2196	if [[ $do_trace = true ]]
2197	then
2198	(( i = 0 ))
2199	while (( i < iin ))
2200	do
2201	(( i = i + 1 ))
2202	if (( i == 1 ))
2203	then
2204	printf "\n\n >>> INPUT-file assignments:\n"
2205	fi
2206	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2207	done
2208	(( i = 0 ))
2209	while (( i < iout ))
2210	do
2211	(( i = i + 1 ))
2212	if (( i == 1 ))
2213	then
2214	printf "\n\n >>> OUTPUT-file assignments:\n"
2215	fi
2216	printf "\n ${localout[$i]} : ${pathout[$i]}"
2217	done
2218	(( i = 0 ))
2219	while (( i < iic ))
2220	do
2221	(( i = i + 1 ))
2222	if (( i == 1 ))
2223	then
2224	printf "\n\n >>> INPUT-commands:\n"
2225	fi
2226	printf "\n ${in_command[$i]}"
2227	done
2228	(( i = 0 ))
2229	while (( i < ioc ))
2230	do
2231	(( i = i + 1 ))
2232	if (( i == 1 ))
2233	then
2234	printf "\n\n >>> OUTPUT-commands:\n"
2235	fi
2236	printf "\n ${out_command[$i]}"
2237	done
2238	fi
2239
2240
2241	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2242	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2243	then
2244	antwort=dummy
2245	printf "\n\n"
2246	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2247	do
2248	printf " >>> everything o.k. (y/n) ? "
2249	read antwort
2250	done
2251	if [[ $antwort = n \|\| $antwort = N ]]
2252	then
2253	locat=user_abort; (( iec = 0 )); exit
2254	fi
2255	if [[ $do_batch = true ]]
2256	then
2257	printf " >>> batch-job will be created and submitted"
2258	else
2259	if [[ $local_compile = false ]]
2260	then
2261	printf " >>> MRUN will now continue to execute on this machine"
2262	else
2263	printf " >>> a test compilation will now be carried out on this machine"
2264	fi
2265	fi
2266	fi
2267
2268
2269
2270
2271	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2272	# CHENDE AKTIONEN DURCHGEFUEHRT
2273	if [[ $do_batch = false ]]
2274	then
2275
2276
2277	# TEMPORAEREN KATALOG ERZEUGEN
2278	mkdir -p $TEMPDIR
2279	chmod go+rx $TEMPDIR
2280	tmpcreate=true
2281
2282
2283	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2284	# TEMPORAERES VERZEICHNIS KOPIEREN
2285	if [[ $do_compile = true ]]
2286	then
2287
2288	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2289	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2290	if [[ $localhost = nech ]]
2291	then
2292	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2293	if mkdir -p $TEMPDIR_COMPILE
2294	then
2295	printf "\n *** \"$TEMPDIR_COMPILE\" "
2296	printf "\n is generated as temporary directory for cross compiling\n"
2297	else
2298	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2299	printf "\n needed for cross compilation failed"
2300	locat=compile
2301	exit
2302	fi
2303	else
2304	TEMPDIR_COMPILE=$TEMPDIR
2305	fi
2306
2307
2308	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2309	line=""
2310	grep "%depository_path" $config_file > tmp_mrun
2311	while read line
2312	do
2313	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2314	then
2315	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2316	then
2317	global_depository_path=`echo $line \| cut -d" " -s -f2`
2318	fi
2319	fi
2320	done < tmp_mrun
2321
2322	line=""
2323	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2324	while read line
2325	do
2326	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2327	then
2328	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2329	then
2330	local_depository_path=`echo $line \| cut -d" " -s -f2`
2331	fi
2332	fi
2333	done < tmp_mrun
2334
2335	if [[ "$local_depository_path" = "" ]]
2336	then
2337	if [[ "$global_depository_path" != "" ]]
2338	then
2339	local_depository_path=$global_depository_path
2340	else
2341	printf "\n\n +++ no depository path found in configuration file"
2342	printf "\n for local host \"$localhost\" "
2343	printf "\n please set \"\%depository_path\" in configuration file\n"
2344	locat=config_file; exit
2345	fi
2346	fi
2347	eval local_depository_path=$local_depository_path
2348	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2349	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2350
2351
2352	basename=`print $mainprog \| cut -f1 -d"."`
2353	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2354	if [[ ! -f $make_depository ]]
2355	then
2356	printf "\n"
2357	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2358	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2359	else
2360	cp $make_depository $TEMPDIR_COMPILE
2361	cd $TEMPDIR_COMPILE
2362	tar -xf $make_depository > /dev/null 2>&1
2363	cd - > /dev/null
2364	fi
2365
2366	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2367
2368	# FALLS USER-INTERFACE VORHANDEN UND AUF DATEI MIT ANDEREM NAMEN
2369	# ALS user_interface.f90 LIEGT, DIESEN GEAENDERTEN NAMEN INS
2370	# MAKEFILE EINTRAGEN
2371	# cd $TEMPDIR_COMPILE
2372	# interface_file=`grep -l "END SUBROUTINE user_parin" $source_list`
2373	# if [[ "$interface_file" != "" ]]
2374	# then
2375	# interface_file=`echo $interface_file \| cut -d"." -f1`
2376	# mv Makefile Makefile_old
2377	# sed "s/user_interface/$interface_file/g" Makefile_old > Makefile
2378	# fi
2379	# cd - > /dev/null
2380	else
2381	cp $executable ${TEMPDIR}/a.out
2382	fi
2383
2384
2385	# WECHSEL IN TEMPORAEREN KATALOG
2386	cd $TEMPDIR
2387	printf "\n *** changed to temporary directory: $TEMPDIR"
2388
2389
2390	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2391	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2392	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2393	# ERMITTELN
2394	(( i = 0 ))
2395	while (( i < iout ))
2396	do
2397	(( i = i + 1 ))
2398	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2399	then
2400	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2401	else
2402	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2403	fi
2404	done
2405
2406
2407	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2408	if [[ $do_compile = true ]]
2409	then
2410
2411
2412	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2413	printf "\n\n\n *** compilation starts \n$striche\n"
2414	printf " *** compilation with make using following options:\n"
2415	printf " make depository: $make_depository"
2416	printf " compilername: $compiler_name\n"
2417	printf " options: $fopts\n"
2418	printf " preprocessor-directives: $cpp_options \n"
2419	printf " linker-options: $lopts \n"
2420	printf " source code files: $source_list \n"
2421
2422	if [[ $localhost = nech ]]
2423	then
2424	ssh 136.172.44.192 -l $usern ". /SX/opt/etc/initsx.sh; cd \$HOME/work/${usern}.$kennung; sxmake -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2425	cp $TEMPDIR_COMPILE/a.out .
2426	[[ $? != 0 ]] && compile_error=true
2427	rm -rf $TEMPDIR_COMPILE
2428	elif [[ $localhost = ibmh ]]
2429	then
2430	printf " compiler is called via ssh on \"plogin1\" \n"
2431	ssh plogin1 -l $usern "export PATH=/sw/ibm/xlf/12.1.0.3/usr/bin:$PATH; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2432	[[ ! -f a.out ]] && compile_error=true
2433	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2434	elif [[ $localhost = lcsgib ]]
2435	then
2436	printf " compiler is called via ssh on \"bicegate\" using module \"$mpilib\" \n"
2437	ssh 130.73.232.103 -l $usern ". /usr/share/modules/init/bash; module load ifort/11.0.069; module load $mpilib; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2438	[[ ! -f a.out ]] && compile_error=true
2439	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2440	elif [[ $localhost = lcsgih ]]
2441	then
2442	printf " compiler is called via ssh on \"hicegate2\" using module \"$mpilib\" \n"
2443	ssh 130.75.4.103 -l $usern ". /usr/share/modules/init/bash; module load ifort/11.0.069; module load $mpilib; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2444	[[ ! -f a.out ]] && compile_error=true
2445	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2446	else
2447	[[ $localhost = lctit ]] && export LM_LICENSE_FILE=27050@tggls
2448	make -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2449	fi
2450
2451	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2452	then
2453	printf "\n +++ error occured while compiling or linking"
2454	locat=compile
2455
2456	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
2457	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
2458	# then
2459	exit
2460	# else
2461	# locat=normal
2462	# fi
2463	else
2464	printf "$striche\n *** compilation finished \n"
2465	fi
2466	fi
2467
2468
2469	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2470	if [[ $local_compile = true ]]
2471	then
2472	cd $HOME
2473	rm -rf $TEMPDIR
2474	locat=local_compile; exit
2475	fi
2476
2477
2478	# BEREITSTELLEN DER INPUT-DATEIEN
2479	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2480	(( i = 0 ))
2481	while (( i < iin ))
2482	do
2483	(( i = i + 1 ))
2484	if (( i == 1 ))
2485	then
2486	printf "\n\n *** providing INPUT-files:\n$striche"
2487	fi
2488
2489
2490	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2491	if [[ "${transin[$i]}" = unavailable ]]
2492	then
2493	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2494	then
2495	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2496	printf "\n is not available!"
2497	else
2498	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2499	printf "\n is not available!"
2500	fi
2501	continue
2502	fi
2503
2504	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2505	files_for_pes=false; datentyp=file
2506	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2507	then
2508	files_for_pes=true; datentyp=directory
2509	actionin[$i]=""
2510	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2511	then
2512	actionin[$i]=""
2513	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2514	then
2515	files_for_pes=true; datentyp=directory
2516	actionin[$i]="ar"
2517	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2518	then
2519	actionin[$i]="ar"
2520	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2521	then
2522	files_for_pes=true; datentyp=directory
2523	actionin[$i]="fl"
2524	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2525	then
2526	actionin[$i]="fl"
2527	fi
2528
2529	if [[ $files_for_pes = true ]]
2530	then
2531	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
2532	else
2533	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
2534	fi
2535
2536	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
2537	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
2538	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
2539	# SERVER ZU HOLEN
2540	if [[ "${actionin[$i]}" = fl ]]
2541	then
2542	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
2543	if [[ $files_for_pes = false ]]
2544	then
2545	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
2546	then
2547	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
2548	got_tmp[$i]=true
2549	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2550	then
2551	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2552	printf "\n *** trying to use backup copy in \"$WORK\" "
2553	cp $WORK/${frelin[$i]} ${localin[$i]}
2554	else
2555	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2556	printf "\n or \"$tmp_data_catalog\" does not exist!"
2557	printf "\n *** trying to get copy from archive"
2558	actionin[$i]=ar
2559	fi
2560	else
2561	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
2562	then
2563	mkdir ${localin[$i]}
2564	cd $tmp_data_catalog/${frelin[$i]}
2565	for file in $(ls *)
2566	do
2567	ln $file $TEMPDIR/${localin[$i]}
2568	done
2569	cd $TEMPDIR
2570	got_tmp[$i]=true
2571	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2572	then
2573	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2574	printf "\n *** trying to use backup copy in \"$WORK\" "
2575	cp -r $WORK/${frelin[$i]} ${localin[$i]}
2576	else
2577	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2578	printf "\n or \"$tmp_data_catalog\" does not exist!"
2579	printf "\n *** trying to get copy from archive"
2580	actionin[$i]=ar
2581	fi
2582	fi
2583	fi
2584
2585
2586	# DATEI LIEGT AUF ARCHIV-SERVER
2587	if [[ "${actionin[$i]}" = ar ]]
2588	then
2589
2590	if [[ $files_for_pes = false ]]
2591	then
2592	printf "\n file will be restored from archive-system ($archive_system)!"
2593	else
2594	printf "\n directory will be restored from archive-system ($archive_system)!"
2595	fi
2596
2597	file_restored=false
2598
2599	if [[ $archive_system = asterix ]]
2600	then
2601	do_stagein=true
2602	(( stagein_anz = 0 ))
2603	while [[ $do_stagein = true ]]
2604	do
2605	if [[ $files_for_pes = false ]]
2606	then
2607	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
2608	else
2609	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
2610	fi
2611	cat STAGEIN_OUTPUT
2612	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
2613	then
2614	file_restored=true
2615	do_stagein=false
2616	else
2617	(( stagein_anz = stagein_anz + 1 ))
2618	if (( stagein_anz == 10 ))
2619	then
2620	printf "\n +++ stagein stoped after 10 tries"
2621	locat=stage
2622	exit
2623	fi
2624	printf "\n +++ restoring from archive failed, trying again:"
2625	sleep 900
2626	fi
2627	done
2628	elif [[ $archive_system = DMF ]]
2629	then
2630	if [[ $files_for_pes = false ]]
2631	then
2632	printf "\n +++ restoring of single files impossible with $archive_system !\n"
2633	locat=DMF
2634	exit
2635	else
2636	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
2637	cp -r $ARCHIVE/${frelin[$i]} $PWD
2638	file_restored=true
2639	fi
2640	elif [[ $archive_system = tivoli ]]
2641	then
2642	if [[ $files_for_pes = false ]]
2643	then
2644	if [[ $localhost = lcsgih ]]
2645	then
2646	ssh $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2647	else
2648	ssh $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2649	fi
2650	else
2651	(( inode = 0 ))
2652	while (( inode < nodes ))
2653	do
2654	if [[ $localhost = lcsgih ]]
2655	then
2656	ssh $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2657	else
2658	ssh $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2659	fi
2660	(( inode = inode + 1 ))
2661	done
2662	fi
2663	file_restored=true
2664	elif [[ $archive_system = ut ]]
2665	then
2666	if [[ $files_for_pes = false ]]
2667	then
2668	cp $UT/${frelin[$i]} .
2669	else
2670	(( inode = 0 ))
2671	while (( inode < nodes ))
2672	do
2673	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
2674	(( inode = inode + 1 ))
2675	done
2676	fi
2677	file_restored=true
2678	else
2679	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
2680	locat=rearchive
2681	exit
2682	fi
2683
2684	if [[ $file_restored = true ]]
2685	then
2686
2687	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
2688	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
2689	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
2690	if [[ $files_for_pes = false ]]
2691	then
2692	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
2693	else
2694	mkdir $tmp_data_catalog/${frelin[$i]}
2695	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
2696	fi
2697	got_tmp[$i]=true
2698
2699	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
2700	mv ${frelin[$i]} ${localin[$i]}
2701
2702	fi
2703	fi
2704
2705
2706	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
2707	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
2708	then
2709
2710	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
2711	then
2712
2713	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
2714	printf "\n file will be provided for $numprocs processors"
2715	mkdir ${localin[$i]}
2716	ival=$numprocs
2717	(( ii = 0 ))
2718	while (( ii <= ival-1 ))
2719	do
2720	if (( ii < 10 ))
2721	then
2722	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
2723	elif (( ii < 100 ))
2724	then
2725	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
2726	elif (( ii < 1000 ))
2727	then
2728	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
2729	else
2730	cp ${absnamein[$i]} ${localin[$i]}/_$ii
2731	fi
2732	(( ii = ii + 1 ))
2733	done
2734
2735	else
2736
2737	if [[ $files_for_pes = true ]]
2738	then
2739
2740	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
2741	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
2742	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
2743	# PER MOVE UMBENANNT WERDEN
2744	printf "\n providing $numprocs files for the respective processors"
2745	mkdir ${localin[$i]}
2746	if [[ $link_local_input = true ]]
2747	then
2748	printf " using ln -f\n"
2749	cd ${absnamein[$i]}
2750	for file in $(ls *)
2751	do
2752	ln -f $file ${localin[$i]}
2753	done
2754	cd $TEMPDIR
2755	fi
2756	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
2757	if [[ ! -f "${localin[$i]}/_0000" ]]
2758	then
2759	if [[ $link_local_input = true ]]
2760	then
2761	printf " ln failed for .../_0000, using cp...\n"
2762	fi
2763	cp -r ${absnamein[$i]}/* ${localin[$i]}
2764	fi
2765
2766	else
2767	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
2768	if [[ $link_local_input = true ]]
2769	then
2770	printf " using ln -f\n"
2771	ln -f ${absnamein[$i]} ${localin[$i]}
2772	fi
2773	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
2774	if [[ ! -f "${localin[$i]}" ]]
2775	then
2776	if [[ $link_local_input = true ]]
2777	then
2778	printf " ln failed, using cp...\n"
2779	fi
2780	cp ${absnamein[$i]} ${localin[$i]}
2781	fi
2782	fi
2783	fi
2784	fi
2785
2786	done
2787	if (( i != 0 ))
2788	then
2789	printf "\n$striche\n *** all INPUT-files provided \n"
2790	fi
2791
2792
2793	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
2794	(( i = 0 ))
2795	while (( i < iic ))
2796	do
2797	(( i = i + 1 ))
2798	if (( i == 1 ))
2799	then
2800	printf "\n\n *** execution of INPUT-commands:\n$striche"
2801	fi
2802	printf "\n >>> ${in_command[$i]}"
2803	eval ${in_command[$i]}
2804	if (( i == iic ))
2805	then
2806	printf "\n$striche\n"
2807	fi
2808	done
2809
2810
2811	# VERBLEIBENDE CPU-ZEIT BERECHNEN
2812	cpurest=${cpumax}.
2813
2814
2815	# START DVR STREAMING SERVER
2816	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
2817	then
2818	if [[ "$dvr_server" != "" ]]
2819	then
2820
2821	printf "\n\n *** preparing the dvr streaming server configuration file"
2822
2823	# Check, if a dvr server is already running
2824	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
2825	if [[ "$running_dvrserver_id" != "" ]]
2826	then
2827
2828	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
2829	printf "\n This server is used instead starting a new one!"
2830	printf "\n If required, script \"process_dvr_output\" has to be run manually."
2831
2832	else
2833
2834	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
2835	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
2836	then
2837	cp ${PALM_BIN}/.dvrserver.config .
2838
2839	# Entering the BASEDIR, UID and GID into this file
2840	user_id=`id -u`
2841	group_id=`id -g`
2842	# & is needed as seperator, because TEMPDIR contains /
2843	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
2844	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
2845	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
2846	mv .dvrserver.3 .dvrserver.config
2847	rm .dvrserver.1 .dvrserver.2
2848
2849	# Start dvr server in background, get his id and print on terminal
2850	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
2851	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
2852	printf "\n *** streaming server with id=$dvrserver_id is started in background"
2853	local_dvrserver_running=.TRUE.
2854	else
2855	printf "\n +++ missing file \".dvrserver.config\" in directory:"
2856	printf "\n \"$PALM_BIN\" "
2857	locat=dvr
2858	exit
2859	fi
2860
2861	fi
2862
2863	else
2864	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
2865	fi
2866	fi
2867
2868
2869	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
2870	# LESEN VON PALM)
2871	cat > ENVPAR << %%END%%
2872	&envpar run_identifier = '$fname', host = '$localhost',
2873	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2874	maximum_cpu_time_allowed = ${cpumax}.,
2875	revision = '$global_revision',
2876	local_dvrserver_running = $local_dvrserver_running /
2877
2878	%%END%%
2879
2880
2881	# PROGRAMMSTART
2882	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
2883	PATH=$PATH:$TEMPDIR
2884
2885	# MPI debug option (argument checking, slows down execution due to increased latency)
2886	if [[ "$mpi_debug" = true ]]
2887	then
2888	export MPI_CHECK_ARGS=1
2889	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
2890	fi
2891
2892	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
2893	then
2894	if [[ "$ENVIRONMENT" = BATCH ]]
2895	then
2896	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
2897	then
2898	printf "\n +++ debug is allowed in interactive mode only"
2899	locat=debug
2900	exit
2901	fi
2902	fi
2903	if [[ $localhost = decalpha ]]
2904	then
2905	dxladebug a.out
2906	elif [[ $localhost = ibmb \|\| $localhost = ibmh ]]
2907	then
2908
2909	# SETUP THE IBM MPI ENVIRONMENT
2910	export MP_SHARED_MEMORY=yes
2911	export AIXTHREADS_SCOPE=S
2912	export OMP_NUM_THREADS=$threads_per_task
2913	export AUTHSTATE=files
2914	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
2915
2916	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
2917	export MP_ADAPTER_USE=shared
2918	export MP_CPU_USE=multiple
2919	export MP_TIMEOUT=1200
2920
2921	unset MP_TASK_AFFINITY
2922
2923	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
2924	#(( ii = 1 ))
2925	#while (( ii <= $numprocs ))
2926	#do
2927	# echo $localhost_realname >> hostfile
2928	# (( ii = ii + 1 ))
2929	#done
2930	#export MP_HOSTFILE=hostfile
2931
2932	if [[ "$LOADLBATCH" = yes ]]
2933	then
2934	totalview poe a.out $ROPTS
2935	else
2936	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
2937	export TVDSVRLAUNCHCMD=ssh
2938	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
2939	fi
2940	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
2941	then
2942	# CURRENTLY NO DEBUGGER ON LCSGI
2943	if [[ $run_coupled_model = true ]]
2944	then
2945	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
2946	locat=debug
2947	exit
2948	else
2949	echo "no_coupling" > runfile_atmos
2950	fi
2951	(( ii = $numprocs / $threads_per_task ))
2952	export OMP_NUM_THREADS=$threads_per_task
2953	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
2954	if [[ $threads_per_task != 1 ]]
2955	then
2956	printf "\n threads per task: $threads_per_task"
2957	fi
2958	printf "\n\n"
2959	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
2960	then
2961	# export MPI_LAUNCH_TIMEOUT=360
2962	if [[ "$totalview" = true ]]
2963	then
2964	printf "\n running totalview debugger"
2965	mpiexec_mpt -tv -n $ii ./a.out $ROPTS < runfile_atmos
2966	else
2967	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
2968	fi
2969	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
2970	then
2971	# ulimit -s 300000 # A too large stack size causes problems
2972	# export MV2_NUM_PORTS=2
2973	# export MV2_CPU_MAPPING=0:1:2:3
2974	if [[ "$totalview" = true ]]
2975	then
2976	printf "\n running totalview debugger"
2977	mpiexec -tv ./a.out $ROPTS < runfile_atmos
2978	else
2979	mpiexec ./a.out $ROPTS < runfile_atmos
2980	fi
2981	fi
2982	else
2983	printf "\n +++ no debug available on \"$localhost\" "
2984	printf "\n or not implemented in mrun so far"
2985	locat=debug
2986	exit
2987	fi
2988	else
2989	if [[ -n $numprocs ]]
2990	then
2991	# RUNNING THE PROGRAM ON PARALLEL MACHINES
2992	if [[ $(echo $host \| cut -c1-3) = ibm ]]
2993	then
2994	# SETUP THE IBM MPI ENVIRONMENT
2995	if [[ $host != ibmh ]]
2996	then
2997	export MP_SHARED_MEMORY=yes
2998	export AIXTHREAD_SCOPE=S
2999	export OMP_NUM_THREADS=$threads_per_task
3000	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
3001	export AUTHSTATE=files
3002	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3003	# export MP_PRINTENV=yes
3004
3005	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3006	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3007	export MP_WAIT_MODE=poll
3008	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3009	fi
3010	if [[ "$LOADLBATCH" = yes ]]
3011	then
3012	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3013	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3014	then
3015	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3016	else
3017	if [[ $run_coupled_model = false ]]
3018	then
3019	if [[ "$ocean_file_appendix" = true ]]
3020	then
3021	echo "precursor_ocean" > runfile_atmos
3022	else
3023	echo "precursor_atmos" > runfile_atmos
3024	fi
3025	else
3026	(( iia = $numprocs_atmos / $threads_per_task ))
3027	(( iio = $numprocs_ocean / $threads_per_task ))
3028	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3029	printf "\n using $coupled_mode coupling"
3030	printf "\n\n"
3031	echo "coupled_run $iia $iio" > runfile_atmos
3032	fi
3033	poe ./a.out $ROPTS < runfile_atmos
3034	fi
3035	else
3036	if [[ $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms ]]
3037	then
3038	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3039	elif [[ $localhost = ibmy ]]
3040	then
3041	if [[ -f $hostfile ]]
3042	then
3043	cp $hostfile hostfile
3044	else
3045	(( ii = 1 ))
3046	while (( ii <= $numprocs ))
3047	do
3048	echo $localhost_realname >> hostfile
3049	(( ii = ii + 1 ))
3050	done
3051	fi
3052	export MP_HOSTFILE=hostfile
3053	if [[ $run_coupled_model = false ]]
3054	then
3055	if [[ "$ocean_file_appendix" = true ]]
3056	then
3057	echo "precursor_ocean" > runfile_atmos
3058	else
3059	echo "precursor_atmos" > runfile_atmos
3060	fi
3061	else
3062	(( iia = $numprocs_atmos / $threads_per_task ))
3063	(( iio = $numprocs_ocean / $threads_per_task ))
3064	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3065	printf "\n using $coupled_mode coupling"
3066	printf "\n\n"
3067	echo "coupled_run $iia $iio" > runfile_atmos
3068	fi
3069	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3070
3071	else
3072	if [[ "$host_file" = "" ]]
3073	then
3074	printf "\n +++ no hostfile given in configuration file"
3075	locat=config_file
3076	exit
3077	else
3078	eval host_file=$host_file
3079	fi
3080	export MP_HOSTFILE=$host_file
3081	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3082	fi
3083	fi
3084	elif [[ $host = nech \|\| $host = necriam ]]
3085	then
3086	(( ii = nodes ))
3087	if [[ $ii = 1 ]]
3088	then
3089	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3090	export MPIPROGINF=YES
3091	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3092	echo "*** execution on single node with mpirun"
3093	mpirun -np $numprocs ./a.out $ROPTS
3094	else
3095	(( i = 0 ))
3096	while (( i < ii ))
3097	do
3098	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3099	(( i = i + 1 ))
3100	done
3101
3102	echo "#!/bin/sh" > mpi_exec_shell
3103	echo " " >> mpi_exec_shell
3104	echo "set -u" >> mpi_exec_shell
3105	echo "F_ERRCNT=0" >> mpi_exec_shell
3106	echo "MPIPROGINV=YES" >> mpi_exec_shell
3107	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3108	echo "cpurest=$cpurest" >> mpi_exec_shell
3109	echo "fname=$fname" >> mpi_exec_shell
3110	echo "localhost=$localhost" >> mpi_exec_shell
3111	echo "return_addres=$return_addres" >> mpi_exec_shell
3112	echo "return_username=$return_username" >> mpi_exec_shell
3113	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3114	echo "write_binary=$write_binary" >> mpi_exec_shell
3115	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3116	echo " " >> mpi_exec_shell
3117	echo "export F_ERRCNT" >> mpi_exec_shell
3118	echo "export MPIPROGINV" >> mpi_exec_shell
3119	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3120	echo "export cpurest" >> mpi_exec_shell
3121	echo "export fname" >> mpi_exec_shell
3122	echo "export localhost" >> mpi_exec_shell
3123	echo "export return_addres" >> mpi_exec_shell
3124	echo "export return_username" >> mpi_exec_shell
3125	echo "export tasks_per_node" >> mpi_exec_shell
3126	echo "export write_binary" >> mpi_exec_shell
3127	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3128	echo " " >> mpi_exec_shell
3129	echo "exec ./a.out" >> mpi_exec_shell
3130
3131	chmod u+x mpi_exec_shell
3132	export MPIPROGINF=YES
3133	mpirun -f multinode_config &
3134	wait
3135
3136	fi
3137	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lctit ]]
3138	then
3139
3140	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3141	# DOES NOT EXIST
3142	if [[ $host != lcsgih && $host != lcsgib ]]
3143	then
3144	if [[ -f $hostfile ]]
3145	then
3146	cp $hostfile hostfile
3147	else
3148	(( ii = 1 ))
3149	while (( ii <= $numprocs / $threads_per_task ))
3150	do
3151	echo $localhost_realname >> hostfile
3152	(( ii = ii + 1 ))
3153	done
3154	fi
3155	eval zeile=\"`head -n $ii hostfile`\"
3156	printf "\n *** running on: $zeile"
3157	fi
3158
3159	(( ii = $numprocs / $threads_per_task ))
3160	export OMP_NUM_THREADS=$threads_per_task
3161	# echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3162	if [[ $threads_per_task != 1 ]]
3163	then
3164	# increase stack size to unlimited, because large runs
3165	# may abort otherwise
3166	ulimit -Ss unlimited
3167	printf "\n threads per task: $threads_per_task stacksize: unlimited"
3168	fi
3169	if [[ $run_coupled_model = false ]]
3170	then
3171	if [[ "$ocean_file_appendix" = true ]]
3172	then
3173	echo "precursor_ocean" > runfile_atmos
3174	else
3175	echo "precursor_atmos" > runfile_atmos
3176	fi
3177	printf "\n\n"
3178	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3179	then
3180	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3181	then
3182	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3183	# export MPI_DSM_DISTRIBUTE=1
3184	# MPI_DSM_CPULIST: pin MPI processes to cores
3185	if [[ $use_openmp = false ]]
3186	then
3187	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3188	fi
3189	# MPI_IB_RAILS: use both IB rails on ICE2
3190	export MPI_BUFS_PER_HOST=512
3191	export MPI_IB_RAILS=2
3192	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3193	export MPI_CONNECTIONS_THRESHOLD=8192
3194	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3195
3196	# next is test for openmp usage
3197	# mpiexec -n $ii -pernode ./a.out $ROPTS < runfile_atmos
3198	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3199	then
3200	export MV2_NUM_PORTS=2
3201	# The default setting of MV2_CPU_MAPPING gives best results
3202	# export MV2_ENABLE_AFFINITY=1
3203	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3204	if [[ $threads_per_task != 1 ]]
3205	then
3206	mpiexec -npernode 1 ./a.out $ROPTS < runfile_atmos
3207	else
3208	mpiexec -np $ii ./a.out $ROPTS < runfile_atmos
3209	fi
3210	fi
3211	elif [[ $host = lcxt4 ]]
3212	then
3213	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3214	else
3215	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3216	fi
3217	else
3218
3219	# currently there is no full MPI-2 support on ICE and XT4
3220	(( iia = $numprocs_atmos / $threads_per_task ))
3221	(( iio = $numprocs_ocean / $threads_per_task ))
3222	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3223	printf "\n using $coupled_mode coupling"
3224	printf "\n\n"
3225
3226	if [[ $coupled_mode = "mpi2" ]]
3227	then
3228	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3229	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3230	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3231	then
3232
3233	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3234	then
3235	# export MPI_LAUNCH_TIMEOUT=360
3236	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3237	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3238	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3239	then
3240	# ulimit -s 300000 # A too large stack size causes problems
3241	# export MV2_NUM_PORTS=2
3242	# export MV2_CPU_MAPPING=0:1:2:3
3243	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3244	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3245	fi
3246
3247	elif [[ $host = lcxt4 ]]
3248	then
3249
3250	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3251	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3252
3253	else
3254	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3255	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3256	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3257	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3258	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3259	fi
3260	wait
3261
3262	else
3263
3264	echo "coupled_run $iia $iio" > runfile_atmos
3265	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3266	then
3267
3268	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3269	then
3270	# export MPI_LAUNCH_TIMEOUT=360
3271	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3272	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3273	then
3274	# ulimit -s 300000 # A too large stack size causes problems
3275	# export MV2_NUM_PORTS=2
3276	# export MV2_CPU_MAPPING=0:1:2:3
3277	mpiexec ./a.out $ROPTS < runfile_atmos
3278	fi
3279
3280	elif [[ $host = lcxt4 ]]
3281	then
3282
3283	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3284
3285	elif [[ $host = lck ]]
3286	then
3287	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3288	fi
3289	wait
3290	fi
3291
3292	# if [[ $scirocco = true ]]
3293	# then
3294	# mpiexec -machinefile hostfile -n $ii a.out $ROPTS
3295	# else
3296	# mpirun -machinefile hostfile -np $ii a.out $ROPTS
3297	# fi
3298	fi
3299	elif [[ $host = decalpha ]]
3300	then
3301	dmpirun -np $numprocs a.out $ROPTS
3302	elif [[ $host = lctit ]]
3303	then
3304	export runfile=runfile.$kennung
3305
3306	echo "cd $PWD" > $runfile
3307	echo "export OMP_NUM_THREADS=$OMP_NUM_THREADS" >> $runfile
3308	echo "export cpurest=$cpurest" >> $runfile
3309	echo "export fname=$fname" >> $runfile
3310	echo "export localhost=$localhost" >> $runfile
3311	echo "export return_addres=$return_addres" >> $runfile
3312	echo "export return_username=$return_username" >> $runfile
3313	echo "export tasks_per_node=$tasks_per_node" >> $runfile
3314	echo "export write_binary=$write_binary" >> $runfile
3315	echo "export use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> $runfile
3316	echo "./a.out" >> $runfile
3317	chmod u+x $runfile
3318
3319	if [[ "$QUEUE" = interactive ]]
3320	then
3321	mpirun -np $numprocs a.out $ROPTS
3322	else
3323	(( mem_tsubame = $memory / 1024.0 ))
3324	echo "Memory for Tsubame for each process in GB:", $mem_tsubame
3325	# n1ge -fore -g 1S060156 -mpi $numprocs -mem 4 -N palm -q $queue a.out $ROPTS
3326	# /n1ge/TITECH_GRID/tools/bin/n1ge -fore -g $group_number -mpi ${numprocs}:$tasks_per_node -mem $mem_tsubame -N palm -rt $minuten -q $queue a.out $ROPTS
3327	n1ge -fore -g $group_number -mpi ${numprocs}:$tasks_per_node -mem $mem_tsubame -N palm -rt $minuten -q $queue a.out $ROPTS
3328	fi
3329
3330	rm $runfile
3331	else
3332	mpprun -n $numprocs a.out $ROPTS
3333	fi
3334	[[ $? != 0 ]] && execution_error=true
3335
3336
3337	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3338	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3339	then
3340	apprentice
3341	fi
3342	else
3343	a.out $ROPTS
3344	fi
3345	fi
3346	if [[ $? != 0 \|\| $execution_error = true ]]
3347	then
3348
3349	# ABBRUCH BEI LAUFZEITFEHLER
3350	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3351	printf "\n +++ runtime error occured"
3352	locat=execution
3353	exit
3354	else
3355	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3356	printf "\n$striche\n *** execution finished \n"
3357
3358	# Stop the dvr streaming server and process the dvr output in order
3359	# to create dvrs- and html-files containing all streams
3360	if [[ "$dvrserver_id" != "" ]]
3361	then
3362	kill $dvrserver_id
3363	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3364
3365	# If there is a directory, data have been output by the
3366	# streaming server. Otherwise, user has chosen dvrp_output=local
3367	if [[ -d DATA_DVR ]]
3368	then
3369
3370	# Add the current dvr configuration file to the dvr output
3371	# directory
3372	cp .dvrserver.config DATA_DVR
3373
3374	# Process the dvr output (option -s for also generating
3375	# sequence mode data)
3376	process_dvr_output -d DATA_DVR -f $fname -s
3377
3378	else
3379
3380	# Process the local output
3381	process_dvr_output -l -d DATA_DVR -f $fname
3382
3383	fi
3384
3385	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3386	then
3387
3388	# Process dvr output generated in local mode (dvrp_output=local)
3389	process_dvr_output -l -d DATA_DVR -f $fname
3390
3391	fi
3392	fi
3393
3394
3395
3396	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3397	(( i = 0 ))
3398	while (( i < ioc ))
3399	do
3400	(( i = i + 1 ))
3401	if (( i == 1 ))
3402	then
3403	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
3404	fi
3405	printf "\n >>> ${out_command[$i]}"
3406	eval ${out_command[$i]}
3407	if (( i == ioc ))
3408	then
3409	printf "\n$striche\n"
3410	fi
3411	done
3412
3413
3414	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
3415	if [[ $do_trace = true ]]
3416	then
3417	printf "\n\n"
3418	ls -al
3419	fi
3420
3421
3422
3423	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
3424	(( i = 0 ))
3425	while (( i < iout ))
3426	do
3427	(( i = i + 1 ))
3428	if (( i == 1 ))
3429	then
3430	printf "\n\n *** saving OUTPUT-files:\n$striche"
3431	fi
3432
3433	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3434	files_for_pes=false; filetyp=file
3435	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
3436	then
3437	files_for_pes=true; filetyp=directory
3438	actionout[$i]=""
3439	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
3440	then
3441	actionout[$i]=""
3442	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
3443	then
3444	files_for_pes=true; filetyp=directory
3445	actionout[$i]="ar"
3446	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
3447	then
3448	actionout[$i]="ar"
3449	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
3450	then
3451	files_for_pes=true; filetyp=directory
3452	actionout[$i]="fl"
3453	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
3454	then
3455	actionout[$i]="fl"
3456	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
3457	then
3458	files_for_pes=true; filetyp=directory
3459	actionout[$i]="tr"
3460	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
3461	then
3462	actionout[$i]="tr"
3463	fi
3464
3465	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
3466	then
3467	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
3468	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
3469	then
3470	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
3471	else
3472
3473
3474	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3475	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3476	# REMOTE-RECHNUNGEN
3477	if [[ "${actionout[$i]}" = tr ]]
3478	then
3479	if [[ $localhost != $fromhost ]]
3480	then
3481	if [[ $files_for_pes = false ]]
3482	then
3483	cps=""
3484	cst=""
3485	else
3486	cps=-c
3487	cst="/"
3488	fi
3489	if [[ $localhost = ibmb \|\| $localhost = nech ]]
3490	then
3491
3492	# TRANSFER IN EIGENSTAENDIGEM JOB
3493	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3494	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3495	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3496	if [[ $files_for_pes = false ]]
3497	then
3498	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3499	else
3500	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
3501	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
3502	fi
3503
3504	echo "set -x" > transfer_${localout[$i]}
3505	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3506
3507	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
3508	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
3509	printf "\n or higher cycle\n"
3510	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3511
3512	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3513
3514	if [[ $localhost = nech ]]
3515	then
3516	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3517	else
3518	if [[ "$LOGNAME" = b323013 ]]
3519	then
3520	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3521	else
3522	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3523	fi
3524	fi
3525
3526	else
3527
3528	# TRANSFER INNERHALB DIESES JOBS
3529	transfer_failed=false
3530	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
3531	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
3532	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3533	[[ $? != 0 ]] && transfer_failed=true
3534
3535	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3536	# LOKALER MASCHINE ANLEGEN
3537	if [[ $transfer_failed = true ]]
3538	then
3539	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3540	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3541
3542	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3543	# ANLEGEN.
3544	eval local_catalog=${pathout[$i]}
3545	if [[ ! -d $local_catalog ]]
3546	then
3547	printf " *** local directory does not exist. Trying to create:\n"
3548	printf " $local_catalog \n"
3549	mkdir -p $local_catalog
3550	fi
3551	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3552	transfer_problems=true
3553	fi
3554	fi
3555	else
3556
3557	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
3558	actionout[$i]=""
3559	fi
3560	fi
3561
3562
3563	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3564	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3565	# REMOTE-RECHNUNGEN
3566	if [[ "${actionout[$i]}" = tra ]]
3567	then
3568	if [[ $localhost != $fromhost ]]
3569	then
3570	if [[ $localhost = ibmh \|\| $localhost = ibmb \|\| $localhost = nech ]]
3571	then
3572
3573	# TRANSFER IN EIGENSTAENDIGEM JOB
3574	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3575	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3576	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3577	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3578
3579	echo "set -x" > transfer_${localout[$i]}
3580	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3581
3582	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
3583	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
3584	printf "\n or higher cycle\n"
3585	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3586
3587	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3588
3589	if [[ $localhost = nech ]]
3590	then
3591	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3592	else
3593	if [[ $LOGNAME = b323013 ]]
3594	then
3595	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3596	else
3597	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3598	fi
3599	fi
3600
3601	else
3602
3603	# TRANSFER INNERHALB DIESES JOBS
3604	transfer_failed=false
3605	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
3606	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
3607	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3608	[[ $? != 0 ]] && transfer_failed=true
3609
3610	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3611	# LOKALER MASCHINE ANLEGEN
3612	if [[ $transfer_failed = true ]]
3613	then
3614	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3615	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3616
3617	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3618	# ANLEGEN
3619	eval local_catalog=${pathout[$i]}
3620	if [[ ! -d $local_catalog ]]
3621	then
3622	printf " *** local directory does not exist. Trying to create:\n"
3623	printf " $local_catalog \n"
3624	mkdir -p $local_catalog
3625	fi
3626
3627	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3628	transfer_problems=true
3629	fi
3630	fi
3631	else
3632
3633	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
3634	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
3635	actionout[$i]=a
3636	fi
3637	fi
3638
3639
3640	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
3641	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
3642	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
3643	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
3644	if [[ "${actionout[$i]}" = fl ]]
3645	then
3646	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3647	chmod g+rx $tmp_data_catalog
3648	if [[ $files_for_pes = false ]]
3649	then
3650	printf "\n >>> OUTPUT: ${localout[$i]} to"
3651	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3652	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
3653	else
3654	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
3655	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3656	mkdir $tmp_data_catalog/${frelout[$i]}
3657	cd ${localout[$i]}
3658	for file in $(ls *)
3659	do
3660	ln -f $file $tmp_data_catalog/${frelout[$i]}
3661	done
3662	cd $TEMPDIR
3663	fi
3664
3665
3666	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
3667	if [[ $store_on_archive_system = true ]]
3668	then
3669
3670	if [[ $archive_system = asterix ]]
3671	then
3672	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3673	if [[ $files_for_pes = false ]]
3674	then
3675	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3676	else
3677	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3678	fi
3679	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3680	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
3681	echo "then" >> archive_${frelout[$i]}
3682	echo " do_stageout=false" >> archive_${frelout[$i]}
3683	echo "else" >> archive_${frelout[$i]}
3684	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
3685	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
3686	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
3687	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
3688	if [[ $files_for_pes = false ]]
3689	then
3690	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
3691	else
3692	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
3693	fi
3694	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
3695	echo "fi" >> archive_${frelout[$i]}
3696	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3697	elif [[ $archive_system = DMF ]]
3698	then
3699	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3700	if [[ $files_for_pes = false ]]
3701	then
3702	printf "\n +++ archiving of single files impossible with $archive_system !\n"
3703	locat=DMF
3704	exit
3705	else
3706	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
3707	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
3708	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
3709	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
3710	fi
3711	elif [[ $archive_system = tivoli ]]
3712	then
3713	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3714	if [[ $files_for_pes = false ]]
3715	then
3716	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3717	echo "set -x" >> archive_${frelout[$i]}
3718	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3719	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3720	else
3721
3722	echo "set -x" >> archive_${frelout[$i]}
3723	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
3724	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3725	cd $tmp_data_catalog
3726	all_files=`ls -1 ${frelout[$i]}/*`
3727	cd - > /dev/null
3728	(( inode = 0 ))
3729	(( tp1 = tasks_per_node + 1 ))
3730	while (( inode < nodes ))
3731	do
3732	# echo "*** all_files = \"$all_files\" "
3733	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3734	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3735	# echo "*** tasks_per_node = \"$tasks_per_node\" "
3736	# echo "*** files = \"$files\" "
3737	# echo "*** all_files = \"$all_files\" "
3738	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3739	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3740	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3741	(( inode = inode + 1 ))
3742	done
3743	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3744	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3745	fi
3746	elif [[ $archive_system = ut ]]
3747	then
3748	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3749	if [[ $files_for_pes = false ]]
3750	then
3751	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3752	echo "set -x" >> archive_${frelout[$i]}
3753	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3754	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3755	else
3756
3757	echo "set -x" >> archive_${frelout[$i]}
3758	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
3759	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
3760	cd $tmp_data_catalog
3761	all_files=`ls -1 ${frelout[$i]}/*`
3762	cd - > /dev/null
3763	(( inode = 0 ))
3764	(( tp1 = tasks_per_node + 1 ))
3765	while (( inode < nodes ))
3766	do
3767	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3768	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3769	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3770	(( inode = inode + 1 ))
3771	done
3772	fi
3773	elif [[ $archive_system = none ]]
3774	then
3775	printf " +++ archiving on $localhost not available!\n"
3776	fi
3777
3778	if [[ $archive_system != none ]]
3779	then
3780	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
3781	then
3782	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
3783	subjob -v -q dataq -X 1 -T 1 -m 1000 -t 10800 -c $job_catalog archive_${frelout[$i]}
3784	elif [[ $localhost = nech ]]
3785	then
3786	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
3787	fi
3788	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3789	fi
3790	else
3791	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
3792	fi
3793
3794
3795	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
3796	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
3797	if [[ $files_for_pes = false ]]
3798	then
3799	cat /dev/null > ${pathout[$i]}
3800	else
3801	mkdir -p ${pathout[$i]}
3802	fi
3803
3804	fi
3805
3806
3807	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
3808	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
3809	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
3810	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
3811	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
3812	# GEMAESSEN ARCHIVIERUNGEN GESETZT
3813	if [[ "${actionout[$i]}" = ar ]]
3814	then
3815	if [[ $files_for_pes = false ]]
3816	then
3817	printf "\n >>> OUTPUT: ${localout[$i]} to"
3818	printf "\n ${pathout[$i]}"
3819	printf "\n File will be copied to archive-system ($archive_system) !\n"
3820	else
3821	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
3822	printf "\n ${pathout[$i]}"
3823	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
3824	fi
3825	mv ${localout[$i]} ${frelout[$i]}
3826
3827	file_saved=false
3828
3829	if [[ $archive_system = asterix ]]
3830	then
3831	do_stageout=true
3832	(( stageout_anz = 0 ))
3833	while [[ $do_stageout = true ]]
3834	do
3835	if [[ $files_for_pes = false ]]
3836	then
3837	stageout ${frelout[$i]} > STAGE_OUTPUT
3838	else
3839	stageout -t ${frelout[$i]} > STAGE_OUTPUT
3840	fi
3841	cat STAGE_OUTPUT
3842	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
3843	then
3844	file_saved=true
3845	do_stageout=false
3846	else
3847	if [[ $files_for_pes = false ]]
3848	then
3849	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
3850	else
3851	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
3852	fi
3853	(( stageout_anz = stageout_anz + 1 ))
3854	if (( stageout_anz == 10 ))
3855	then
3856	printf "\n +++ stoped after 10 unsuccessful tries!"
3857	archive_save=false
3858	do_stageout=false
3859	else
3860	printf "\n *** new try to store on archive after 15 min:"
3861	sleep 900
3862	fi
3863	fi
3864	done
3865	elif [[ $archive_system = DMF ]]
3866	then
3867	if [[ $files_for_pes = false ]]
3868	then
3869	printf "\n +++ archiving of single files impossible on $archive_system!\n"
3870	locat=DMF
3871	exit
3872	else
3873	rm -rf $ARCHIVE/${frelout[$i]}
3874	cp -r ${frelout[$i]} $ARCHIVE
3875	fi
3876	file_saved=true
3877	elif [[ $archive_system = tivoli ]]
3878	then
3879	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
3880	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
3881	# GELEGT WERDEN
3882	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3883	chmod g+rx $tmp_data_catalog
3884	if [[ $files_for_pes = false ]]
3885	then
3886	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
3887	else
3888	mkdir $tmp_data_catalog/${frelout[$i]}
3889	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
3890	fi
3891
3892	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
3893	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
3894	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
3895	if [[ $files_for_pes = false ]]
3896	then
3897	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3898	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3899	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3900	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3901	else
3902	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3903	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3904	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3905	fi
3906
3907	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
3908	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3909	file_saved=true
3910
3911	elif [[ $archive_system = ut ]]
3912	then
3913	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
3914	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
3915	# GELEGT WERDEN
3916	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3917	chmod g+rx $tmp_data_catalog
3918	if [[ $files_for_pes = false ]]
3919	then
3920	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
3921	else
3922	mkdir $tmp_data_catalog/${frelout[$i]}
3923	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
3924	fi
3925
3926	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
3927	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
3928	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
3929	if [[ $files_for_pes = false ]]
3930	then
3931	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3932	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3933	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3934	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3935	else
3936	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3937	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3938	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3939	fi
3940
3941	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
3942	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3943	file_saved=true
3944
3945	else
3946	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
3947	archive_save=false
3948	fi
3949	if [[ $file_saved = true ]]
3950	then
3951	if [[ $files_for_pes = false ]]
3952	then
3953	cat /dev/null > ${pathout[$i]}
3954	else
3955	mkdir -p ${pathout[$i]}
3956	fi
3957	fi
3958	fi
3959
3960	# APPEND AUF LOKALER MASCHINE
3961	if [[ "${actionout[$i]}" = "a" ]]
3962	then
3963	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
3964	cat ${localout[$i]} >> ${pathout[$i]}
3965	fi
3966
3967	# KOPIEREN AUF LOKALER MASCHINE
3968	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
3969	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
3970	then
3971
3972	# KOPIEREN AUF EINPROZESSORMASCHINE
3973	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
3974	then
3975	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
3976	if [[ $link_local_output = true ]]
3977	then
3978	printf " using ln -f\n"
3979	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
3980	fi
3981	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
3982	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
3983	then
3984	if [[ $link_local_output = true ]]
3985	then
3986	printf " ln failed, using cp...\n"
3987	fi
3988	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
3989	fi
3990	else
3991	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
3992	if [[ $link_local_output = true ]]
3993	then
3994	printf " using ln -f\n"
3995	ln -f ${localout[$i]} ${pathout[$i]}
3996	fi
3997	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
3998	if [[ ! -f "${pathout[$i]}" ]]
3999	then
4000	if [[ $link_local_output = true ]]
4001	then
4002	printf " ln failed, using cp...\n"
4003	fi
4004	cp ${localout[$i]} ${pathout[$i]}
4005	fi
4006	fi
4007
4008	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
4009	then
4010
4011	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
4012	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
4013	# WIRD DANN KOPIERT
4014	# PER MOVE UMBENANNT WERDEN
4015	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4016	if [[ $link_local_output = true ]]
4017	then
4018	printf " using ln -f\n"
4019	mkdir ${pathout[$i]}
4020	cd ${localout[$i]}
4021	for file in $(ls *)
4022	do
4023	ln -f $file ${pathout[$i]}
4024	done
4025	cd $TEMPDIR
4026	fi
4027	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4028	if [[ ! -f "${pathout[$i]}/_0000" ]]
4029	then
4030	if [[ $link_local_output = true ]]
4031	then
4032	printf " ln failed for .../_0000, using cp...\n"
4033	fi
4034	cp -r ${localout[$i]} ${pathout[$i]}
4035	fi
4036
4037	fi
4038	fi
4039	done
4040	if (( i != 0 ))
4041	then
4042	if [[ $transfer_problems = true ]]
4043	then
4044	printf "\n$striche\n *** OUTPUT-files saved"
4045	printf "\n +++ WARNING: some data transfers failed! \n"
4046	else
4047	printf "\n$striche\n *** all OUTPUT-files saved \n"
4048	fi
4049	fi
4050
4051
4052	# EVENTUELL FOLGEJOB STARTEN
4053	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4054	if [[ -f CONTINUE_RUN ]]
4055	then
4056
4057	if [[ $archive_save = true ]]
4058	then
4059
4060	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4061	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4062	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4063	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4064	# HANDEN
4065	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4066	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4067	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4068	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4069	then
4070	mc=`echo $mc \| sed 's/#/f/g'`
4071	fi
4072
4073
4074	# JOB STARTEN
4075	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4076	echo " $mc"
4077	printf "\n$striche\n"
4078	if [[ $localhost != $fromhost ]]
4079	then
4080
4081	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms \|\| $localhost = lctit ]]
4082	then
4083	echo "*** ssh will be used to initiate restart-runs!"
4084	echo " return_addres=\"$return_addres\" "
4085	echo " return_username=\"$return_username\" "
4086	if [[ $return_addres = 172.20.25.41 ]]
4087	then
4088	# WORKAROUND AUF SCIROCCO AM TIT
4089	print "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc " \| ssh $return_addres -l $return_username
4090	elif [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4091	then
4092	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export LD_LIBRARY_PATH=\$LD_LIBRARY_PATH:/muksoft/packages/intel/Compiler/11.0/083/lib/intel64/;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4093	else
4094	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4095	fi
4096	else
4097	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4098	locat=restart; exit
4099	fi
4100
4101	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4102	# DER AKTUELLE JOB ENDET
4103	if [[ $queue = special1q ]]
4104	then
4105	sleep 120
4106	else
4107	sleep 30
4108	fi
4109
4110	else
4111
4112	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4113	# RUFEN WERDEN, AUSSER AUF lcfimm
4114	cd $LOCAL_PWD
4115	if [[ $localhost = lcfimm ]]
4116	then
4117	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4118	else
4119	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4120	fi
4121	cd - > /dev/null
4122	fi
4123	printf "\n$striche\n *** restart-run initiated \n"
4124
4125
4126	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4127	# GEHOLT WORDEN SIND, LOESCHEN
4128	(( i = 0 ))
4129	while (( i < iin ))
4130	do
4131	(( i = i + 1 ))
4132	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4133	then
4134	rm -r $tmp_data_catalog/${frelin[$i]}
4135	fi
4136	done
4137
4138	else
4139
4140	printf "\n +++ no restart-run possible, since errors occured"
4141	printf "\n during the archive process"
4142	fi
4143
4144	fi
4145
4146
4147
4148	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4149	if [[ "$email_notification" != "none" ]]
4150	then
4151
4152	if [[ $localhost != $fromhost ]]
4153	then
4154	if [[ -f CONTINUE_RUN ]]
4155	then
4156	echo "PALM restart run necessary" > email_text
4157	echo "description header of actual run:" >> email_text
4158	cat CONTINUE_RUN >> email_text
4159	echo "mrun-command to restart:" >> email_text
4160	echo "$mc" >> email_text
4161	else
4162	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4163	fi
4164	mail $email_notification < email_text
4165	printf "\n *** email notification sent to \"$email_notification\" "
4166	fi
4167	fi
4168
4169
4170
4171	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4172	cd $HOME
4173	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4174
4175	else
4176
4177
4178	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4179	# CHENDE AKTIONEN DURCHGEFUEHRT
4180
4181	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4182	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
4183	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4184	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4185	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4186	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4187	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4188	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4189	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4190	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4191	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4192	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4193	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4194	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4195	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4196	if [[ $use_openmp = true ]]
4197	then
4198	mrun_com=${mrun_com}" -O"
4199	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $threads_per_task"
4200	else
4201	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4202	fi
4203	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
4204	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4205	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4206	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4207	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4208	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4209	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4210	if [[ $do_remote = true ]]
4211	then
4212	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4213	fi
4214
4215
4216	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4217	jobfile=jobfile.$RANDOM
4218
4219
4220	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4221	echo "mkdir $TEMPDIR" >> $jobfile
4222	echo "cd $TEMPDIR" >> $jobfile
4223
4224
4225	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4226	if [[ $do_trace = true ]]
4227	then
4228	echo "set -x" >> $jobfile
4229	else
4230	echo "set +vx" >> $jobfile
4231	fi
4232
4233
4234	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4235	# DATEI FUER DEN JOB
4236	if [[ $( echo $host \| cut -c1-5 ) = lcsgi ]]
4237	then
4238
4239	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4240	# KOPIEREN
4241	if [[ $restart_run != true ]]
4242	then
4243	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4244	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4245	fi
4246
4247	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4248	echo "set -x" >> $jobfile
4249	echo "scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4250	echo "export SOURCES_COMPLETE=true" >> $jobfile
4251
4252	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4253	# ARBEITSVERZEICHNIS VERSCHIEBEN
4254	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4255	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4256	echo "execute_mrun=true" >> $jobfile
4257	echo " " >> $jobfile
4258
4259	else
4260
4261	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4262	# SOWIE GEGEBENENFALLS DES MAKEFILES
4263	if [[ $do_compile = true ]]
4264	then
4265
4266	source_catalog=SOURCES_FOR_RUN_$fname
4267
4268	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4269	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4270	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4271	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4272	echo "export SOURCES_COMPLETE=true" >> $jobfile
4273	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4274
4275	for filename in $source_list
4276	do
4277	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4278	echo "cat > $filename << \"%END%\"" >> $jobfile
4279	cat $source_catalog/$filename >> $jobfile
4280	echo " " >> $jobfile
4281	echo "%END%" >> $jobfile
4282	echo " " >> $jobfile
4283	done
4284
4285	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4286	echo "cat > Makefile << \"%END%\"" >> $jobfile
4287	cat $source_catalog/Makefile >> $jobfile
4288	echo " " >> $jobfile
4289	echo "%END%" >> $jobfile
4290	echo " " >> $jobfile
4291
4292	echo "cd - > /dev/null" >> $jobfile
4293
4294	fi
4295
4296
4297	# ABSPEICHERN DER KONFIGURATIONSDATEI
4298	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4299	echo "cat > $config_file << \"%END%\"" >> $jobfile
4300	cat $config_file >> $jobfile
4301	echo "%END%" >> $jobfile
4302	echo " " >> $jobfile
4303
4304
4305	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
4306	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4307	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
4308	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
4309	echo "%END%" >> $jobfile
4310	if [[ $host = lctit ]]
4311	then
4312	echo "sed 's/bin\/ksh/home2\/usr5\/mkanda\/pub\/ksh/' < $mrun_script_name > mrun_new" >> $jobfile
4313	echo "mv mrun_new $mrun_script_name" >> $jobfile
4314	fi
4315	echo "chmod u+x $mrun_script_name" >> $jobfile
4316	echo "execute_mrun=true" >> $jobfile
4317	echo " " >> $jobfile
4318
4319	fi
4320
4321
4322	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
4323	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
4324	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
4325	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
4326	if [[ $do_remote = true ]]
4327	then
4328	(( i = 0 ))
4329	while (( i < iin ))
4330	do
4331	(( i = i + 1 ))
4332	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
4333	if [[ "${transin[$i]}" = job ]]
4334	then
4335	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
4336	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
4337	echo " " >> $jobfile
4338	echo "%END%" >> $jobfile
4339	else
4340	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
4341	fi
4342
4343	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
4344	echo "if [[ \$? = 1 ]]" >> $jobfile
4345	echo "then" >> $jobfile
4346	echo " echo \" \" " >> $jobfile
4347	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
4348	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
4349	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
4350	echo " execute_mrun=false" >> $jobfile
4351	echo "fi" >> $jobfile
4352	done
4353	fi
4354
4355	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
4356	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
4357	echo "LOCAL_PWD=$working_directory" >> $jobfile
4358	echo "export LOCAL_PWD" >> $jobfile
4359
4360	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
4361	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
4362	echo "export LOCAL_MRUN_PATH" >> $jobfile
4363
4364	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
4365	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
4366	then
4367	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
4368	fi
4369
4370	# MRUN AUF ZIELRECHNER AUFRUFEN
4371	echo "set -x" >> $jobfile
4372	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
4373
4374	echo 'ls -al; echo `pwd`' >> $jobfile
4375	echo "cd \$HOME" >> $jobfile
4376	echo "rm -rf $TEMPDIR" >> $jobfile
4377
4378
4379
4380
4381	# JOB PER SUBJOB STARTEN
4382	if [[ $silent = false ]]
4383	then
4384	printf "\n "
4385	else
4386	printf "\n\n"
4387	fi
4388
4389	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $jobfile
4390	rm -rf $jobfile
4391
4392
4393	fi # ENDE REMOTE-TEIL
4394
4395
4396
4397	# ENDE DER PROZEDUR

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