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source: palm/trunk/SCRIPTS/mrun @ 260

Last change on this file since 260 was 260, checked in by raasch, 15 years ago
automatic generation of dvrs/html file for combined dvr streams; automatic call of streaming server
Property svn:keywords set to `Id Rev`
File size: 160.4 KB

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1	#!/bin/ksh
2	# mrun - Plot-Shellskript
3	# $Id: mrun 260 2009-03-16 11:57:58Z raasch $
4
5	# Prozedur zum Starten von Modellaeufen
6
7	# letzte Aenderung:
8	# 03/03/94 - Siggi - Entwicklungsbeginn
9	# 21/03/94 - Siggi - Entwicklungsabschluss (Version 1.0)
10	# 09/12/94 - Siggi - allexport unterbunden; statt dessen werden jetzt ein-
11	# zelne Variable exportiert. Dies ist noetig, weil an-
12	# sonsten irgendein Speicher ueberlaeuft und von mrun
13	# aufgerufene Programme (z.B. stageout) mit Fehlern
14	# abbrechen (too many arguments)
15	# 20/06/95 - Siggi - noclobber muss explizit abgeschaltet, da jetzt
16	# defaultmaessig im RRZN-Profile eingeschaltet
17	# 10/06/97 - Siggi - Zusaetzliche Option -C bei cpp, damit // nicht
18	# wegfallen
19	# 25/04/00 - Siggi - Version 1.5
20	# remote_addres und remote_user in return_addres bzw.
21	# return_username umbenannt, return_username wird dem
22	# mrun-Aufruf im Job ueber Option -U mitgegeben.
23	# Neue Variable remote_username, die beim interaktiven
24	# mrun-Aufruf zwingend ueber die neue Option -u oder
25	# in der Konfigurationsdatei angegeben werden muss.
26	# 08/02/01 - Siggi - Alle mrun-Meldungen ins englische uebersetzt,
27	# Version 1.7
28	# 05/05/02 - Siggi - Uebersetzungen mittels make-Mechanismus moeglich
29	# 21/11/02 - Siggi - ENV-Variable XLFRTEOPTS wird vor Ausfuehrung auf
30	# IBM gesetzt, um Record-Laenge der NAMELIST-Dateien,
31	# zu bestimmen; Praeprozessoroptionen haben nun alle
32	# die Form -Dtext=text, weil auf IBM sonst text durch
33	# die leere Zeichenkette ersetzt wird
34	# 01/08/03 - Siggi - Test of implementing dvrp+1PE on ibm
35	# 07/01/04 - Siggi - additional preprocessor directive for ibm included
36	# (-D$OMP=OMP) in order to avoid problems with
37	# OMP_NUM_THREADS
38	# 04/01/05 - Siggi - archiving on hanni and berni is done in separate
39	# tar files, one for each node used
40	# 07/01/04 - Siggi - old code for t3e, vpp and hpcs eliminated
41	# 09/01/05 - Siggi - workaround for getting the IP address on gfdl3
42	# 17/01/05 - Siggi - job for data transfer to local machine now within
43	# job class c1 (HLRN)
44	# 27/01/05 - Siggi - IP address workaround for gfdl3 removed
45	# 28/01/05 - Siggi - tar-filenames on $PERM (HLRN) now include the
46	# base filename and cycle number
47	# 16/02/05 - Gerald - hababai validated
48	# 14/03/05 - Siggi - abort on NEC after first runtime error (F_ERRCNT)
49	# 29/03/05 - Marcus - berni*-en0 validated
50	# 21/04/05 - Siggi - transfer-job-protocol for avs-data is no more stored
51	# 24/04/05 - Siggi - netcdf support on lcmuk
52	# 25/04/05 - Siggi - netcdf support on gfld3 (decalpha)
53	# 11/05/05 - Siggi - files with non-numeric extensions (.xxx after cycle
54	# number) can now be used within interactive runs
55	# 12/05/05 - Siggi - netcdf support on ibm
56	# 13/05/05 - Siggi - error in tar-filenames on $PERM (HLRN) removed
57	# 18/05/05 - Siggi - netcdf support on nec
58	# 24/05/05 - Siggi - netcdf support on ibms
59	# 14/06/05 - Siggi - sleep interval after submit of restart job increased
60	# to 30 seconds
61	# 28/06/05 - Siggi - bora adjusted to new intel compiler (LD_LIBRARY_
62	# PATH is temporarily set)
63	# 07/09/05 - Siggi - setting of MP_EAGER_LIMIT switched off because it
64	# caused warnings in the job protocol
65	# 20/10/05 - Siggi - update of netcdf-version on decalpha (gfdl3)
66	# 25/10/05 - Siggi - error in listing files for getting the cycle number
67	# removed
68	# 26/10/05 - Siggi - new paths for dvrp-library, transfer of catalogs
69	# realized by file attribute trpe
70	# 28/10/05 - Siggi - if existing, the file extension is output in case
71	# of missing input file - no job abort in case of
72	# missing input files with file extensions
73	# (preliminary solution)
74	# 31/10/05 - Siggi - data transfer from nech now within seperate job
75	# 04/11/05 - Siggi - netcdf 3.6.0-p1 on ibmh/ibmb
76	# 07/12/05 - Siggi - gallego and elephanta admitted
77	# 30/12/05 - Siggi - gfdl5 (ibmy) admitted
78	# 10/01/06 - Siggi - cpp directive for NetCDF 64bit support
79	# 20/01/06 - Siggi - cpp directive for ibmy
80	# 09/02/06 - Siggi - ibmy admitted for batch mode
81	# 13/04/06 - Siggi - ostria admitted
82	# 18/04/06 - Siggi - usage of OpenMP implemented (additional option -O)
83	# 10/05/06 - Siggi - environment variable XLSMPOPTS set on IBM for
84	# optimization of OpenMP runs (option stacksize is
85	# necessary for large gridpoint numbers because
86	# otherwise a segmentation fault occurs)
87	# 23/05/05 - Siggi - lctit (SUN Fire X4600) admitted
88	# 21/08/06 - Siggi - standard mrun path on scirocco is as on bora
89	# 23/08/06 - Siggi - netcdf support for scirocco (notebook)
90	# 20/09/06 - Marcus - add DVRP library on nech
91	# 24/10/06 - Siggi - Environment variables for PALM steering are written
92	# on local NAMELIST file ENVPAR
93	# 24/11/06 - Siggi - levanto admitted, maestro switched to ifc 9.1
94	# 28/11/06 - Siggi - call to interpret_config.x_levanto because of SuSe 10
95	# 06/02/07 - Siggi - add DVRP library on lcmuk
96	# 07/02/07 - Siggi - revision of source code handling, source code is
97	# now expected in directory given by source_path and
98	# not in the current working directory, source code
99	# files provided in add_source_path are allways
100	# compiled, source code to be compiled is allways
101	# sampled in SOURCES_FOR_RUN_$fname which is a
102	# subdirectory of the current working directory,
103	# -s TEST changed to -s WRITE_PERMIT or -s WP,
104	# adapted for RIAM (neck)
105	# bugfix for cycle number of output file (extout)
106	# all hpmuk-related code removed
107	# 14/02/07 - Siggi - dvrp support for neck added
108	# 28/02/07 - Siggi - empty lines in configuration file are accepted
109	# mrun_path replaced by PALM_BIN,
110	# all machines are calling interpret_config.x
111	# 14/03/07 - Siggi - fimm admitted, revision number added to terminal
112	# output
113	# 16/03/07 - Siggi - adjustments for lctit
114	# 29/03/07 - Siggi - global revision transfered to batch job by new
115	# option -G
116	# 30/03/07 - Siggi - compilation "by hand" removed, cpp-directives/options
117	# + netcdf/dvrp-options are read from configuration
118	# file, host identifier (local_host) is read from
119	# config file, code related to ftp filetransfer
120	# removed (incl. option -f)
121	# 19/06/07 - Siggi - time limit for cdata jobs increased
122	# 25/07/07 - Siggi - two sets of executables can be started on lcmuk,
123	# if new option -Y (coupling) is given,
124	# output of executables to aout_output removed,
125	# messages are immediately written to stdout instead
126	# 03/08/07 - Marcus - add XOPT="-X $numprocs" for lcfimm
127	# 09/08/07 - Marcus - workaround on lcfimm to propagate environment
128	# variables out to the nodes in coupled mode -disabled-
129	# 13/08/07 - Marcus - start local restart jobs per ssh on lcfimm
130	# 28/08/07 - Marcus - completely remove workaround on lcfimm to propagate
131	# environment variables out to the nodes in coupled mode
132	# 15/10/07 - Siggi - Preliminary adjustments for lctit, based on Jin's
133	# suggestions
134	# 19/10/07 - Marcus - further adjustments for lctit: add new optional
135	# argument -g group_number, admit all sla* node_usage
136	# queues
137	# 30/10/07 - Marcus - further adjustments for queues on lctit
138	# 14/02/08 - Bjoern - link of restart files with long file name possible
139	# 28/02/08 - Marcus - If environment variable link_local_output is set to
140	# true, mrun tries "ln -f" on local output and resorts
141	# to "cp" or "cp -r" on error
142	# 15/04/08 - Siggi - argument -c introduced to most of the subjob calls,
143	# which allows the user to choose his own job catalog
144	# by setting job_catalog in the configuration file
145	# (default is ~/job_queue),
146	# workaround for mpiexec with -env option,
147	# adjustments for lcxt4 (Bergen Center for Computational
148	# Science)
149	# 22/05/08 - Marcus - If environment variable link_local_input is set to
150	# true, mrun tries "ln -f" on local input and resorts
151	# to "cp" or "cp -r" on error
152	# 27/05/08 - Siggi - PATH is set to PALM_BIN everywhere (missing so far)
153	# 14/07/08 - Siggi - adjustments for lcsgih
154	# 08/08/08 - Marcus - typo removed in lcxt4 branch
155	# 17/09/08 - Siggi - restart mechanism adjusted for lcsgi
156	# 02/10/08 - BjornM - argument "-Y" modified, adjustments for coupled runs
157	# 21/10/08 - Siggi - bugfix for the case that -K has more than one
158	# argument
159	# 08/11/08 - Siggi - bugfix for depository path settings in configuration
160	# file
161	# 11/11/08 - Siggi - rules for using user code files changed: user
162	# code splitted into one file per subroutine,
163	# user can provide his/her own makefile, only
164	# default source-code filenames are allowed
165	# 14/11/08 - Siggi - cond1 and cond2 are part of the depository name
166	# 08/01/09 - Siggi - mpi module on sgi machines to be used can be set
167	# with environment variable mpilib
168	# 13/01/09 - Siggi - totalview on hice/bice can be used in debug mode
169	# using environment variable totalview
170	# 25/02/09 - Siggi - cputime-option (-t) is allowed to be omitted for
171	# interactive runs
172	# 05/03/09 - Siggi - adjustments for new NEC-SX9 at RIAM (necriam)
173	# 16/03/09 - Siggi - dvrp_lib, dvrp_inc replaced by dvr_lib, dvr_inc,
174	# dvr streaming server is automatically started using
175	# new variable dvr_server and a configuration file
176	# .dvrserver.config,
177	# processing of dvr output files implemented, in order
178	# to make dvr application more user friendly
179
180
181
182	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
183
184	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
185	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
186	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
187
188	AddFilenames=""
189	additional_conditions=""
190	add_source_path=""
191	afname=""
192	archive_save=true
193	archive_system=none
194	compiler_name=""
195	cond1=""
196	cond2=""
197	config_file=.mrun.config
198	coupled_dist=""
199	coupled_mode="mpi1"
200	cpp_opts=""
201	cpp_options=""
202	cpumax=0
203	cpurest=0
204	delete_temporary_catalog=true
205	do_batch=false
206	do_compile=true
207	do_remote=false
208	do_stagein=true
209	do_stageout=true
210	do_trace=false
211	email_notification=""
212	exclude=""
213	executable=""
214	execution_error=false
215	fimm=false
216	fname=test
217	fromhost=""
218	global_revision=""
219	group_number=none
220	host=""
221	host_file=""
222	hp=""
223	ignore_archive_error=false
224	input_list=""
225	interpreted_config_file=""
226	job_catalog="~/job_queue"
227	job_on_file=""
228	keep_data_from_previous_run=false
229	link_local_input=false
230	link_local_output=false
231	localhost_realname=$(hostname)
232	local_compile=false
233	local_dvrserver_running=.FALSE.
234	locat=normal
235	mainprog=""
236	makefile=""
237	mc=$0
238	while [[ $(echo $mc \| grep -c "/") != 0 ]]
239	do
240	mc=`echo $mc \| cut -f2- -d"/"`
241	done
242	module_files=""
243	mrun_script_name=$mc
244	netcdf_inc=""
245	netcdf_lib=""
246	netcdf_support=false
247	node_usage=default
248	numprocs=""
249	numprocs_atmos=0
250	numprocs_ocean=0
251	OOPT=""
252	openmp=false
253	output_list=""
254	package_list=""
255	punkte="..........................................................."
256	queue=none
257	read_from_config=""
258	restart_run=false
259	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
260	if [[ $return_addres = 130.75.105.158 ]]
261	then
262	return_addres=172.20.25.41
263	echo "+++ WARNING: return_addres changed to $return_addres !!!!!"
264	fi
265	return_password=""
266	return_username=$LOGNAME
267	remotecall=false
268	remote_username=""
269	run_coupled_model=false
270	run_mode=""
271	scirocco=false
272	store_on_archive_system=true
273	striche=" ----------------------------------------------------------------------------"
274	silent=false
275	source_list=""
276	source_path=SOURCE
277	tasks_per_node=""
278	threads_per_task=1
279	tmpcreate=false
280	tmp_data_catalog=""
281	transfer_problems=false
282	usern=$LOGNAME
283	working_directory=`pwd`
284	TOPT=""
285	XOPT=""
286	zeit=$( date \| cut -c 12-19 )
287
288	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
289	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
290
291	typeset -R30 calltime
292	typeset -L20 spalte1
293	typeset -L40 spalte2
294	typeset -L60 spalte3
295	typeset -L35 string1=`date`
296	typeset -L12 string2=$usern
297	typeset -L12 string3=$localhost_realname
298	typeset -L12 string4
299	typeset -L12 string5
300	typeset -L30 version="MRUN 2.0 Rev$Rev: 260 $"
301
302
303
304	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
305	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
306
307	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
308	# EXPORTIERT WERDEN
309	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
310	export group_number input_list memory numprocs output_list queue run_mode
311
312
313
314	# FEHLERBEHANDLUNG
315	# BEI EXIT:
316	trap 'rm -rf $working_directory/tmp_mrun
317	if [[ $locat != localhost ]]
318	then
319	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
320	# then
321	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
322	#MRUN-calls on $localhost
323	#
324	#date and time user localhost remotehost termination mrun-command
325	#--------------------------------------------------------------------------------------------------------------------
326	#%STATEND%
327	# chmod 666 ${mrun_path}/statistik/mrun_statistik
328	# fi
329	#
330	# # EINTRAG IN DIE STATISTIK-DATEI
331	# string4=$host
332	# string5=$locat
333	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
334	# then
335	# if [[ $do_batch = true ]]
336	# then
337	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
338	# else
339	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
340	# fi
341	# fi
342	echo " " > /dev/null
343	fi
344
345	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
346	then
347
348	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
349	(( i = 0 ))
350	while (( i < iec ))
351	do
352	(( i = i + 1 ))
353	printf "\n *** Execution of ERROR-command:\n"
354	printf " >>> ${err_command[$i]}\n"
355	eval ${err_command[$i]}
356	done
357	if [[ -n $interpreted_config_file ]] then
358	rm -rf $interpreted_config_file
359	fi
360	if [[ -n .mrun_environment ]] then
361	rm -rf .mrun_environment
362	fi
363	if [[ $tmpcreate = true ]]
364	then
365	printf "\n *** Contents of \"$TEMPDIR\":\n"
366	ls -al; cd
367	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
368	fi
369	if [[ "$dvrserver_id" != "" ]]
370	then
371	echo "+++ killing dvrserver_id=$dvrserver_id"
372	kill $dvrserver_id
373	fi
374	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
375	then
376	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
377	fi
378	printf "\n\n+++ MRUN killed \n\n"
379	elif [[ $locat != control_c ]]
380	then
381	printf "\n\n --> all actions finished\n\n"
382	printf " Bye, bye $usern !!\n\n"
383	fi' exit
384
385
386	# BEI TERMINAL-BREAK:
387	trap 'rm -rf $working_directory/tmp_mrun
388	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
389	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
390	then
391	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
392	fi
393	if [[ "$dvrserver_id" != "" ]]
394	then
395	echo "+++ killing dvrserver_id=$dvrserver_id"
396	kill $dvrserver_id
397	fi
398	printf "\n+++ MRUN killed by \"^C\" \n\n"
399	locat=control_c
400	exit
401	' 2
402
403
404	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
405	# BEEN SET
406	if [[ "$PALM_BIN" = "" ]]
407	then
408	printf "\n +++ environment variable PALM_BIN has not been set"
409	printf "\n please set it to the directory where the PALM scripts are located"
410	locat=palm_bin; exit
411	fi
412	export PATH=$PALM_BIN:$PATH
413
414
415
416	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
417	# FUER FOLGEJOBS BENOETIGT WIRD
418	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:Op:P:q:r:R:s:St:T:u:U:vxX:Y: option
419	do
420	case $option in
421	(a) afname=$OPTARG;;
422	(A) store_on_archive_system=false; mc="$mc -A";;
423	(b) do_batch=true; mc="$mc -b";;
424	(B) delete_temporary_catalog=false; mc="$mc -B";;
425	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
426	(C) restart_run=true; mc="$mc -C";;
427	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
428	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
429	(F) job_on_file="-D"; mc="$mc -F";;
430	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
431	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
432	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
433	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
434	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
435	(I) ignore_archive_error=true; mc="$mc -I";;
436	(k) keep_data_from_previous_run=true; mc="$mc -k";;
437	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
438	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
439	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
440	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
441	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
442	(O) use_openmp=true; mc="$mc -O";;
443	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
444	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
445	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
446	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
447	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
448	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
449	(S) read_from_config=false; mc="$mc -S";;
450	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
451	(T) tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
452	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
453	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
454	(v) silent=true; mc="$mc -v";;
455	(x) do_trace=true;set -x; mc="$mc -x";;
456	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
457	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
458	(\?) printf "\n +++ unknown option $OPTARG \n"
459	printf "\n --> type \"$0 ?\" for available options \n"
460	locat=parameter;exit;;
461	esac
462	done
463
464
465	# EVTL. POSITIONSPARAMETER EINLESEN
466	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
467	shift OPTIND-1
468
469
470	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
471	if [[ "$1" = "?" ]]
472	then
473	(printf "\n *** mrun can be called as follows:\n"
474	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -Y.. <modus>\n"
475	printf "\n Description of available options:\n"
476	printf "\n Option Description Default-Value"
477	printf "\n -a base name of input files equiv. -d"
478	printf "\n -A no archiving when using file-attribute fl"
479	printf "\n -b batch-job on local machine ---"
480	printf "\n -B do not delete temporary directory at end ---"
481	printf "\n -c configuration file .mrun.config"
482	printf "\n -d base name of files attached to program test"
483	printf "\n -D preprocessor(cpp)-directives \"\" "
484	printf "\n -F create remote job file only ---"
485	printf "\n -h execution host $localhost_realname"
486	printf "\n -i INPUT control list \"\" "
487	printf "\n -I archiving errors of previous batch-jobs"
488	printf "\n will be ignored"
489	printf "\n -k keep data from previous run"
490	printf "\n -K additional conditions for controling"
491	printf "\n usage of conditional code and"
492	printf "\n env-variables in configuration file \"\" "
493	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
494	printf "\n -M Makefile name Makefile"
495	printf "\n -n node usage (shared/not_shared) depending on -h"
496	printf "\n -o OUTPUT control list \"\" "
497	printf "\n -O use OpenMP ---"
498	printf "\n -p software package list \"\" "
499	printf "\n -q queue \"$queue\" "
500	printf "\n -r run control list (combines -i -o) \"\" "
501	printf "\n -s filenames of routines to be compiled \"\" "
502	printf "\n must end with .f, .f90, .F, or .c !"
503	printf "\n use \"..\" for more than one file and wildcards"
504	printf "\n -s TEST compiles all files with w-permit"
505	printf "\n -S config file interpreted by shellscript ---"
506	printf "\n -t allowed cpu-time in seconds (batch) 0"
507	printf "\n -T tasks per node depending on -h"
508	printf "\n -u username on remote machine \"\" "
509	printf "\n -v no prompt for confirmation ---"
510	printf "\n -x tracing of mrun for debug purposes ---"
511	printf "\n -X # of processors (on parallel machines) 1"
512	printf "\n -Y run coupled model, \"#1 #2\" with"
513	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
514	printf "\n "
515	printf "\n Possible values of positional parameter <modus>:"
516	printf "\n \"?\" - this outline \n\n") \| more
517	exit
518	elif [[ "$1" != "" ]]
519	then
520	printf "\n +++ positional parameter $1 unknown \n"
521	locat=parameter; exit
522	fi
523
524
525
526	# KURZE STARTMELDUNG
527	printf "\n*** $version "
528	printf "\n will be executed. Please wait ..."
529
530
531
532	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
533	if [[ ! -f $config_file ]]
534	then
535	printf "\n\n +++ configuration file: "
536	printf "\n $config_file"
537	printf "\n does not exist"
538	locat=connect; exit
539	fi
540
541
542	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
543	line=""
544	grep "%host_identifier" $config_file > tmp_mrun
545	while read line
546	do
547	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
548	then
549	HOSTNAME=`echo $line \| cut -d" " -s -f2`
550	host_identifier=`echo $line \| cut -d" " -s -f3`
551	if [[ $localhost_realname = $HOSTNAME ]]
552	then
553	localhost=$host_identifier
554	break
555	fi
556	fi
557	done < tmp_mrun
558
559	if [[ "$localhost" = "" ]]
560	then
561	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
562	printf "\n for local host \"$localhost_realname\"."
563	printf "\n Please add line"
564	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
565	printf "\n to the configuration file."
566	locat=localhost; exit
567	fi
568
569
570	# HOSTSPEZIFISCHE VARIABLEN SETZEN
571	case $localhost_realname in
572	(breg-en0\|berni-en0) archive_system=tivoli;;
573	(cs*) archive_system=ut;;
574	(fimm.bccs.uib.no) fimm=true;;
575	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
576	(hreg-en0\|hanni-en0) archive_system=tivoli;;
577	(scirocco) scirocco=true;;
578	esac
579
580
581
582	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
583	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
584	[[ "$afname" = "" ]] && afname=$fname
585
586
587	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
588	if [[ "$run_mode" != "" ]]
589	then
590	input_list="$input_list $run_mode"
591	output_list="$output_list $run_mode"
592	fi
593
594
595	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
596	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
597	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
598	# STARTET)
599	if [[ "$fromhost" = "" ]]
600	then
601	fromhost=$localhost
602	fi
603
604
605	# PRUEFEN, OB MRUN NUR TESTWEISE AUF DER LOKALEN MASCHINE KOMPILIEREN SOLL
606	if [[ "$source_list" = LOCAL_COMPILE_TEST ]]
607	then
608	source_list=TEST
609	local_compile=true
610	host=$localhost
611	fi
612
613
614	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
615	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
616	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
617	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
618	if [[ -n $host && "$host" != $localhost ]]
619	then
620	do_batch=true
621	do_remote=true
622	case $host in
623	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|nech\|necriam\|lcsgib\|lcsgih\|lctit\|unics\|lcxt4) true;;
624	(*) printf "\n"
625	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
626	printf "\n is not available"
627	locat=nqs; (( iec = 0 )); exit;;
628	esac
629	else
630	host=$localhost
631	fi
632
633
634	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
635	if [[ -n $additional_conditions ]]
636	then
637	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
638	cond1=`echo $additional_conditions \| cut -d" " -f1`
639	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
640	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
641	if [[ -n $dummy ]]
642	then
643	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
644	locat=options; exit
645	fi
646	fi
647
648
649	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
650	if [[ $run_coupled_model = true ]]
651	then
652
653	if [[ -n $coupled_dist ]]
654	then
655
656	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
657	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
658
659	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
660	then
661
662	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
663	printf "\n PEs (total) : $numprocs"
664	printf "\n PEs (atmosphere): $numprocs_atmos"
665	printf "\n PEs (ocean) : $numprocs_ocean"
666	locat=coupling; exit
667
668	# REARRANGING BECAUSE CURRENTLY ONLY 1:1 TOPOLOGIES ARE SUPPORTED
669	# THIS SHOULD BE REMOVED IN FUTURE
670	elif (( $numprocs_ocean != $numprocs_atmos ))
671	then
672
673	printf "\n +++ currently only 1:1 topologies are supported"
674	printf "\n PEs (total) : $numprocs"
675	printf "\n PEs (atmosphere): $numprocs_atmos"
676	printf "\n PEs (ocean) : $numprocs_ocean"
677	(( numprocs_atmos = $numprocs / 2 ))
678	(( numprocs_ocean = $numprocs / 2 ))
679	printf "\n +++ rearranged topology to $numprocs_atmos:$numprocs_ocean"
680
681	fi
682
683	else
684
685	(( numprocs_ocean = $numprocs / 2 ))
686	(( numprocs_atmos = $numprocs / 2 ))
687
688	fi
689	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
690
691	# GET coupled_mode FROM THE CONFIG FILE
692	line=""
693	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
694	while read line
695	do
696	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && ( $(echo $line \| cut -d" " -s -f4) = $cond1 \|\| $(echo $line \| cut -d" " -s -f4) = $cond2 ) ]]
697	then
698	coupled_mode="mpi2"
699	fi
700	done < tmp_mrun
701
702	fi
703
704
705	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
706	# ARCHIVIERUNG FEHLGESCHLAGEN IST
707	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
708	then
709	if [[ $ignore_archive_error = false ]]
710	then
711	printf "\n +++ data archiving of previous run failed"
712	printf "\n see directory \~/job_queue on remote machine"
713	locat=archive; exit
714	else
715	printf "\n +++ warning: data archiving in a previous run failed"
716	printf "\n MRUN continues, trying to get backup copy"
717	fi
718	fi
719
720
721
722	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
723	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
724	if [[ "$read_from_config" = false ]]
725	then
726
727	[[ $silent = false ]] && printf "\n Reading the configuration file... "
728	while read zeile
729	do
730	[[ $silent = false ]] && printf "."
731
732
733	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
734	# ERSETZEN
735	eval zeile=\"$zeile\"
736
737
738	# INTERPRETATION DER ZEILE
739	if [[ "$(echo $zeile)" = "" ]]
740	then
741	# LEERZEILE, KEINE AKTION
742	continue
743
744	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
745	then
746
747	# ZEILE IST KOMMENTARZEILE
748	true
749
750	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
751	then
752
753	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
754	zeile=$(echo $zeile \| cut -c2-)
755	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
756	var=`echo $zeile \| cut -d" " -f1`
757	value=`echo $zeile \| cut -d" " -s -f2`
758	for_host=`echo $zeile \| cut -d" " -s -f3`
759	for_cond1=`echo $zeile \| cut -d" " -s -f4`
760	for_cond2=`echo $zeile \| cut -d" " -s -f5`
761
762	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
763	then
764
765	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
766	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
767	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
768
769
770	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
771	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
772	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
773	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
774	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
775	# KONFIGURATIONSDATEI
776	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
777	then
778	eval $var=\$value
779
780	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
781	if [[ $do_trace = true ]]
782	then
783	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
784	fi
785	fi
786
787	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
788	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
789	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
790	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
791	if [[ $var = host ]]
792	then
793	if [[ -n $host && "$host" != $localhost ]]
794	then
795	do_batch=true
796	do_remote=true
797	case $host in
798	(ibm\|ibms\|ibmy\|lcsgib\|lcsgih\|lctit\|nech\|necriam\|unics\|lcxt4) true;;
799	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
800	printf "\n is not available"
801	locat=nqs; exit;;
802	esac
803	else
804	host=$localhost
805	fi
806	fi
807
808	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
809	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
810	# DEN PROGRAMMEN BENOETIGT WERDEN
811	export $var
812	fi
813
814
815
816
817	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
818	then
819
820	# ZEILE DEFINIERT ERROR-KOMMANDO
821	(( iec = iec + 1 ))
822	zeile=$(echo $zeile \| cut -c4-)
823	err_command[$iec]="$zeile"
824
825	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
826	then
827
828	# ZEILE DEFINIERT INPUT-KOMMANDO
829	(( iic = iic + 1 ))
830	zeile=$(echo $zeile \| cut -c4-)
831	in_command[$iic]="$zeile"
832
833	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
834	then
835
836	# ZEILE DEFINIERT OUTPUT-KOMMANDO
837	(( ioc = ioc + 1 ))
838	zeile=$(echo $zeile \| cut -c4-)
839	out_command[$ioc]="$zeile"
840
841	else
842
843	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
844	# s2a: in/out - Feld
845	# s2b: loc - Feld (optional)
846	# s2c: tr/ar - Feld (optional)
847	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
848	s1=`echo $zeile \| cut -d" " -f1`
849	s2=`echo $zeile \| cut -d" " -s -f2`
850	s2a=$(echo $s2 \| cut -d":" -f1)
851	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
852	then
853	s2b=""
854	s2c=""
855	else
856	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
857	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
858	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
859	fi
860	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
861	s3=`echo $zeile \| cut -d" " -f3`
862	s4=`echo $zeile \| cut -d" " -s -f4`
863	s5=`echo $zeile \| cut -d" " -s -f5`
864	s6=`echo $zeile \| cut -d" " -s -f6`
865
866
867	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
868	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
869	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
870	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
871	# HANDEN SEIN MUSS (D.H. s2b = loc)
872	IFSALT="$IFS"; IFS="$IFS:"
873	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
874	then
875	found=false
876	for actual in $input_list
877	do
878	for formal in $s3
879	do
880	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
881	done
882	done
883	if [[ $found = true ]]
884	then
885	(( iin = iin + 1 ))
886	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
887	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
888	extin[$iin]=$s6
889	fi
890	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
891	then
892	found=false
893	for actual in $output_list
894	do
895	for formal in $s3
896	do
897	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
898	done
899	done
900	if [[ $found = true ]]
901	then
902	(( iout = iout + 1 ))
903	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
904	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
905	fi
906	elif [[ "$s2a" != in && "$s2a" != out ]]
907	then
908	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
909	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
910	locat=connect; exit
911	fi
912	IFS="$IFSALT"
913	fi
914	done < $config_file
915
916	else
917
918
919	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
920	[[ $silent = false ]] && printf "..."
921	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
922	export interpreted_config_file=.icf.$RANDOM
923
924
925
926	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
927	# VERFUEGUNG STELLEN
928	cat > .mrun_environment << %%END%%
929	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
930	config_file = '$config_file', do_remote = '$do_remote',
931	do_trace = '$do_trace', host = '$host',
932	input_list = '$input_list', icf = '$interpreted_config_file',
933	localhost = '$localhost', output_list = '$output_list' /
934
935	%%END%%
936
937	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
938	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
939	mrun_memory=$memory
940	mrun_group_number=$group_number
941	mrun_cpumax=$cpumax
942	mrun_numprocs=$numprocs
943
944	if [[ $localhost_realname = "sx-fep" ]]
945	then
946	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
947	else
948	interpret_config.x
949	fi
950	rm .mrun_environment
951
952
953	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
954	chmod u+x $interpreted_config_file
955	export PATH=$PATH:.
956	. $interpreted_config_file
957	rm $interpreted_config_file
958
959
960	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
961	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
962	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
963	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
964	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
965
966	fi
967
968
969	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
970	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
971	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
972	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
973	if [[ "$SOURCES_COMPLETE" = "" ]]
974	then
975
976	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
977	# VEREINBART WURDE
978	source_path=""
979	line=""
980	grep "%source_path" $config_file > tmp_mrun
981	while read line
982	do
983	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
984	then
985	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
986	then
987	global_source_path=`echo $line \| cut -d" " -f2`
988	fi
989	fi
990	done < tmp_mrun
991
992	line=""
993	found=false
994	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
995	while read line
996	do
997	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
998	then
999	if [[ $found = true ]]
1000	then
1001	printf "\n\n +++ more than one source path found in configuration file"
1002	printf "\n for local host \"$localhost\" "
1003	locat=source_path; exit
1004	fi
1005	source_path=`echo $line \| cut -d" " -f2`
1006	found=true
1007	fi
1008	done < tmp_mrun
1009	rm tmp_mrun
1010
1011	if [[ "$source_path" = "" ]]
1012	then
1013	if [[ "$global_source_path" != "" ]]
1014	then
1015	source_path=$global_source_path
1016	else
1017	printf "\n\n +++ no source path found in configuration file"
1018	printf "\n for local host \"$localhost\" "
1019	locat=source_path; exit
1020	fi
1021	fi
1022	eval source_path=$source_path
1023
1024	if [[ ! -d $source_path ]]
1025	then
1026	printf "\n\n +++ source path \"$source_path\" on local host"
1027	printf "\n \"$localhost\" does not exist"
1028	locat=source_path; exit
1029	fi
1030
1031	fi
1032
1033
1034	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
1035	# DURCH OPTION -G MITGETEILT)
1036	if [[ "$global_revision" = "" ]]
1037	then
1038	global_revision=`svnversion $source_path 2>/dev/null`
1039	global_revision="Rev: $global_revision"
1040	fi
1041
1042
1043	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
1044	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
1045	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
1046	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
1047	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
1048	if [[ -n $host && "$host" != $localhost ]]
1049	then
1050	do_batch=true
1051	do_remote=true
1052	case $host in
1053	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|lcsgib\|lcsgih\|lctit\|nech\|necriam\|unics\|lcxt4) true;;
1054	(*) printf "\n"
1055	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
1056	printf "\n is not available"
1057	locat=nqs; (( iec = 0 )); exit;;
1058	esac
1059	else
1060	host=$localhost
1061	fi
1062
1063
1064	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
1065	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1066	then
1067
1068	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
1069	if [[ ! -n $numprocs ]]
1070	then
1071	printf "\n"
1072	printf "\n +++ option \"-K parallel\" requires additional specification"
1073	printf "\n of the number of processors to be used by"
1074	printf "\n mrun-option \"-X\" or by environment-variable"
1075	printf "\n \"numprocs\" in the configuration file"
1076	locat=numprocs; (( iec = 0 )); exit
1077	fi
1078
1079	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
1080	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
1081	# GESAMTPROZESSORANZAHL IST
1082	if [[ $host = nech \|\| $host = necriam \|\| $host = ibmh \|\| $host = ibmb \|\| $host = ibms ]]
1083	then
1084	[[ "$tasks_per_node" = "" ]] && tasks_per_node=6
1085	(( ival = $tasks_per_node ))
1086	(( pes = numprocs ))
1087	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1088	# then
1089	# (( pes = pes - 1 ))
1090	# fi
1091	(( ii = pes / ival ))
1092	if (( pes - ii * ival > 0 ))
1093	then
1094	printf "\n"
1095	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1096	printf "\n divisor of the total number of processors (option \"-X\")"
1097	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1098	locat=tasks_per_node; (( iec = 0 )); exit
1099	fi
1100	fi
1101
1102	# IBMY HAT NUR EINEN KNOTEN
1103	if [[ $host = ibmy ]]
1104	then
1105	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1106	then
1107	printf "\n"
1108	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1109	printf "\n total number of processors (option \"-X\")"
1110	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1111	locat=tasks_per_node; (( iec = 0 )); exit
1112	fi
1113	fi
1114
1115	# FALLS OPENMP PARALLELISIERUNG VERWENDET WERDEN SOLL, ANZAHL VON THREADS
1116	# SETZEN UND ZAHL DER TASKS PRO KNOTEN AUF 1 SETZEN
1117	if [[ $use_openmp = true ]]
1118	then
1119	threads_per_task=$tasks_per_node
1120	tasks_per_node=1
1121	fi
1122	OOPT="-O $threads_per_task"
1123	TOPT="-T $tasks_per_node"
1124
1125	# GESAMTZAHL DER KNOTEN BESTIMMEN
1126	if [[ "$tasks_per_node" != "" ]]
1127	then
1128	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1129	fi
1130
1131	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1132	# SETZEN
1133	if [[ $node_usage = default ]]
1134	then
1135	if [[ $host = ibms ]]
1136	then
1137	node_usage=shared
1138	elif [[ $host = lctit ]]
1139	then
1140	node_usage=sla3
1141	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1142	then
1143	node_usage=singlejob
1144	else
1145	node_usage=not_shared
1146	fi
1147	fi
1148
1149	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]]
1150	then
1151	printf "\n"
1152	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1153	printf "\n \"shared\" or \"not_shared\""
1154	locat=tasks_per_node; (( iec = 0 )); exit
1155	fi
1156
1157	fi
1158
1159	# PRUEFEN, OB HOSTFILE EXISTIERT
1160	if [[ -n $hostfile ]]
1161	then
1162	if [[ ! -f $hostfile ]]
1163	then
1164	printf "\n"
1165	printf "\n +++ hostfile \"$hostfile\" does not exist"
1166	locat=hostfile; exit
1167	fi
1168	fi
1169
1170	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1171	if [[ $host = ibmy && $do_remote = false ]]
1172	then
1173	if [[ ! -f $HOME/.rhosts ]]
1174	then
1175	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1176	printf "\n\n *** file:"
1177	printf "\n $HOME/.rhosts"
1178	printf "\n was created\n"
1179	fi
1180	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1181	then
1182	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1183	printf "\n\n *** file:"
1184	printf "\n $HOME/.rhosts"
1185	printf "\n was extended by the name of the current host\n"
1186	fi
1187	fi
1188
1189
1190
1191	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1192	if [[ $queue = none ]]
1193	then
1194	case $host in
1195	(ibmb) if [[ $node_usage = shared ]]
1196	then
1197	queue=cshare
1198	else
1199	queue=csolo
1200	fi;;
1201	(ibmh) if [[ $node_usage = shared ]]
1202	then
1203	queue=cshare
1204	else
1205	queue=csolo
1206	fi;;
1207	(ibmy) queue=parallel;;
1208	(lcsgib) queue=bigq;;
1209	(lcsgih) queue=bigq;;
1210	(lctit) queue=sla3;;
1211	(nech) queue=none;;
1212	(necriam) queue=SP;;
1213	(unics) queue=unics;;
1214	esac
1215	fi
1216
1217
1218	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1219	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1220	# ERMITTELN
1221	(( i = 0 ))
1222	while (( i < iin ))
1223	do
1224	(( i = i + 1 ))
1225	(( maxcycle = 0 ))
1226
1227	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1228	if [[ "${actionin[$i]}" = di ]]
1229	then
1230	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1231	# REM-MASCHINE AUSWERTEN
1232	eval filename=${pathin[$i]}/${endin[$i]}
1233	else
1234	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1235	# REM-MASCHINE AUSWERTEN
1236	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1237	fi
1238
1239	# PRUEFEN AUF VORHANDENSEIN
1240	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1241	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1242	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1243	then
1244	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1245	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1246	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1247	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1248	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1249	if [[ "${transin[$i]}" != "locopt" ]]
1250	then
1251	printf "\n\n +++ INPUT-file: "
1252	if [[ "${extin[$i]}" = "" ]]
1253	then
1254	printf "\n $filename"
1255	else
1256	printf "\n $filename.${extin[$i]}"
1257	fi
1258	printf "\n does not exist\n"
1259	locat=input; exit
1260	else
1261	transin[$i]="unavailable"
1262	fi
1263	else
1264
1265	# ZYKLUSNUMMER FESTSTELLEN
1266	ls -1 -d $filename > filelist 2>/dev/null
1267	ls -1 -d $filename.* >> filelist 2>/dev/null
1268	while read zeile
1269	do
1270	cycle=$(print $zeile \| cut -f2 -d".")
1271	if [[ "$cycle" = "$zeile" ]]
1272	then
1273	(( icycle = 0 ))
1274	elif [[ "$cycle" = "${extin[$i]}" ]]
1275	then
1276	(( icycle = 0 ))
1277	else
1278	(( icycle = $cycle ))
1279	fi
1280	if (( icycle > maxcycle ))
1281	then
1282	(( maxcycle = icycle ))
1283	file_to_be_used=$zeile
1284	fi
1285	done <filelist
1286	rm filelist
1287
1288	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1289	if (( maxcycle > 0 ))
1290	then
1291	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1292	then
1293	filename=${filename}.$maxcycle.${extin[$i]}
1294	else
1295	filename=${filename}.$maxcycle
1296	fi
1297	else
1298	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1299	then
1300	filename=${filename}.${extin[$i]}
1301	fi
1302	fi
1303
1304	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1305	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1306	absnamein[$i]=$filename
1307	if (( maxcycle > 0 ))
1308	then
1309	if [[ "${actionin[$i]}" = di ]]
1310	then
1311	frelin[$i]=${endin[$i]}.$maxcycle
1312	else
1313	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1314	fi
1315	else
1316	if [[ "${actionin[$i]}" = di ]]
1317	then
1318	frelin[$i]=${endin[$i]}
1319	else
1320	frelin[$i]=${afname}${endin[$i]}
1321	fi
1322	fi
1323
1324	fi
1325	done
1326
1327
1328	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1329	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1330	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1331	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1332	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1333	(( i = 0 ))
1334	while (( i < iout ))
1335	do
1336	(( i = i + 1 ))
1337	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1338	then
1339	if [[ "${actionout[$i]}" = tr ]]
1340	then
1341	actionout[$i]=""
1342	elif [[ "${actionout[$i]}" = trpe ]]
1343	then
1344	actionout[$i]=pe
1345	elif [[ "${actionout[$i]}" = tra ]]
1346	then
1347	actionout[$i]=a
1348	fi
1349	(( maxcycle = 0 ))
1350	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1351	eval catalogname=${pathout[$i]}
1352	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1353	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1354	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1355	then
1356
1357	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1358	if cat /dev/null > $filename
1359	then
1360	rm $filename
1361	else
1362
1363	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1364	if [[ ! -d $catalogname ]]
1365	then
1366	if mkdir -p $catalogname
1367	then
1368	printf "\n\n *** directory:"
1369	printf "\n $catalogname"
1370	printf "\n was created\n"
1371	else
1372	printf "\n\n +++ OUTPUT-file:"
1373	printf "\n $filename"
1374	printf "\n cannot be created, because directory does not exist"
1375	printf "\n and cannot be created either"
1376	printf "\n"
1377	locat=output ; exit
1378	fi 2>/dev/null
1379	else
1380	printf "\n\n +++ OUTPUT-file:"
1381	printf "\n $filename"
1382	printf "\n cannot be created, although directory exists"
1383	printf "\n"
1384	locat=output ; exit
1385	fi
1386	fi 2>/dev/null
1387	else
1388
1389	# ZYKLUSNUMMER FESTSTELLEN
1390	ls -1 -d $filename > filelist 2>/dev/null
1391	ls -1 -d $filename.* >> filelist 2>/dev/null
1392	while read zeile
1393	do
1394	cycle=$(print $zeile \| cut -f2 -d".")
1395	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1396	then
1397	(( icycle = 1 ))
1398	else
1399	(( icycle = $cycle + 1 ))
1400	fi
1401	if (( icycle > maxcycle ))
1402	then
1403	(( maxcycle = icycle ))
1404	fi
1405	done <filelist
1406	rm filelist
1407	fi
1408
1409	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1410	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1411	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1412	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1413	if [[ "${actionout[$i]}" != a ]]
1414	then
1415	if (( maxcycle > 0 ))
1416	then
1417	filename=${filename}.$maxcycle
1418	if cat /dev/null > $filename
1419	then
1420	rm $filename
1421	else
1422	printf "\n +++ OUTPUT-file:"
1423	printf "\n $filename"
1424	printf "\n cannot be created"
1425	locat=output ; exit
1426	fi
1427	fi
1428	else
1429	(( maxcycle = maxcycle - 1 ))
1430	if (( maxcycle > 0 ))
1431	then
1432	filename=${filename}.$maxcycle
1433	fi
1434	fi
1435
1436	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1437	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1438	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1439	pathout[$i]=$filename
1440	if (( maxcycle > 0 ))
1441	then
1442	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1443	else
1444	frelout[$i]=${fname}${endout[$i]}
1445	fi
1446
1447	fi
1448	done
1449
1450
1451	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1452	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1453	then
1454	if [[ "$dvr_inc" = "" ]]
1455	then
1456	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1457	printf "\n This is required for the dvrp_graphics package.\n"
1458	locat=dvr; exit
1459	fi
1460	if [[ "$dvr_lib" = "" ]]
1461	then
1462	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1463	printf "\n This is required for the dvrp_graphics package.\n"
1464	locat=dvr; exit
1465	fi
1466	fi
1467
1468
1469	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1470	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1471	# UEBERSETZT ZU WERDEN)
1472	if [[ "$mainprog" = "" && "$executable" = "" ]]
1473	then
1474	printf "\n +++ neither main program nor executable defined"
1475	locat=source; exit
1476	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1477	then
1478	printf "\n +++ main program as well as executable defined"
1479	locat=source; exit
1480	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1481	then
1482	do_compile=false
1483	fi
1484
1485
1486	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1487	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1488	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1489	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1490	then
1491	rm -rf SOURCES_FOR_RUN_$fname
1492	mkdir SOURCES_FOR_RUN_$fname
1493	fi
1494
1495
1496	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1497	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1498	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1499	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1500	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1501	then
1502
1503	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1504	[[ "$source_list" = WP ]] && source_list=WRITE_PERMIT
1505
1506
1507	# EVTL. ZU UEBERSETZENDE PROGRAMMTEILE DADURCH BESTIMMEN, DASS GEPRUEFT
1508	# WIRD, WELCHE DATEIEN WRITE-PERMIT BESITZEN (DATEIEN SOLLTEN DESHALB
1509	# UNTER RCS-KONTROLLE STEHEN). MIT DER VARIABLEN EXCLUDE KOENNEN
1510	# BESTIMMTE DATEIEN GRUNDSAETZLICH VON DER UEBERSETZUNG AUSGESCHLOSSEN
1511	# WERDEN. DIES IST NUR BEI MANUELLEM START VON MRUN DURCH DEN BENUTZER
1512	# MOEGLICH, DA BEI AUTOMATISCHEN RESTARTS TEST DURCH DIE TATSAECHLICH
1513	# ZU UBERSETZENDEN DATEIEN ERSETZT IST.
1514	# ALLE ERMITTELTEN DATEIEN WERDEN IM VERZEICHNIS SOURCES_FOR_RUN_...
1515	# GESAMMELT
1516	if [[ "$source_list" = WRITE_PERMIT ]]
1517	then
1518
1519	source_list=""
1520	cd $source_path
1521
1522
1523	# ALLE MOEGLICHEN QUELLCODEDATEIEN AUFLISTEN
1524	Names=$(ls -1 *.f90 2>&1)
1525	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && Filenames="$Names"
1526	Names=$(ls -1 *.F90 2>&1)
1527	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && Filenames="$Filenames $Names"
1528	Names=$(ls -1 *.F 2>&1)
1529	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && Filenames="$Filenames $Names"
1530	Names=$(ls -1 *.f 2>&1)
1531	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && Filenames="$Filenames $Names"
1532	Names=$(ls -1 *.c 2>&1)
1533	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && Filenames="$Filenames $Names"
1534
1535
1536	# DATEIEN MIT WRITE-PERMIT NACH SOURCES_FOR_RUN_... KOPIEREN
1537	for dateiname in $Filenames
1538	do
1539	if [[ -w $dateiname ]]
1540	then
1541	if [[ "$exclude" = "" \|\| $(echo $exclude \| grep -c $dateiname) = 0 ]]
1542	then
1543	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1544	source_list=$source_list"$dateiname "
1545	fi
1546	fi
1547	done
1548
1549	cd - > /dev/null
1550
1551
1552	elif [[ "$source_list" = LOCALLY_MODIFIED ]]
1553	then
1554
1555	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1556	source_list=""
1557	cd $source_path
1558
1559
1560	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1561	if [[ ! -d .svn ]]
1562	then
1563	printf "\n\n +++ source directory"
1564	printf "\n \"$source_path\" "
1565	printf "\n is not under control of \"subversion\"."
1566	printf "\n Please do not use mrun-option \"-s LOCALLY MODIFIED\"\n"
1567	fi
1568
1569
1570	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1571	Filenames=""
1572	svn status > tmp_mrun
1573	while read line
1574	do
1575	firstc=`echo $line \| cut -c1`
1576	if [[ $firstc = M \|\| $firstc = "?" ]]
1577	then
1578	Name=`echo "$line" \| cut -c8-`
1579	extension=`echo $Name \| cut -d. -f2`
1580	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1581	then
1582	Filenames="$Filenames "$Name
1583	fi
1584	fi
1585	done < tmp_mrun
1586
1587
1588	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1589	for dateiname in $Filenames
1590	do
1591	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1592	source_list=$source_list"$dateiname "
1593	done
1594
1595	cd - > /dev/null
1596
1597
1598	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1599	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1600	# VORHANDEN
1601	elif [[ "$source_list" != "" && $restart_run != true ]]
1602	then
1603
1604	cd $source_path
1605
1606	for filename in $source_list
1607	do
1608
1609	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1610	if [[ $(print $filename \| grep -c "/") != 0 ]]
1611	then
1612	printf "\n +++ source code file: $filename"
1613	printf "\n must not contain (\"/\") "
1614	locat=source; exit
1615	fi
1616
1617	if [[ ! -f $filename ]]
1618	then
1619	printf "\n +++ source code file: $filename"
1620	printf "\n does not exist"
1621	locat=source; exit
1622	else
1623	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1624	fi
1625
1626	done
1627
1628	cd - > /dev/null
1629
1630	fi
1631
1632
1633	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1634	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1635	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1636	if [[ $restart_run != true ]]
1637	then
1638
1639	if [[ ! -f "$source_path/$mainprog" ]]
1640	then
1641	printf "\n\n +++ main program: $mainprog"
1642	printf "\n does not exist in source directory"
1643	printf "\n \"$source_path\"\n"
1644	locat=source; exit
1645	else
1646	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1647	then
1648	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1649	source_list=${mainprog}" $source_list"
1650	fi
1651	fi
1652	fi
1653
1654
1655	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1656	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1657	if [[ "$restart_run" != true ]]
1658	then
1659	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1660	if [[ ! -f $makefile ]]
1661	then
1662	printf "\n +++ file \"$makefile\" does not exist"
1663	locat=make; exit
1664	else
1665	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1666	fi
1667	fi
1668
1669
1670	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1671	if [[ $restart_run != true && "$add_source_path" != "" ]]
1672	then
1673
1674	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1675	if [[ ! -d $add_source_path ]]
1676	then
1677	printf "\n\n +++ WARNING: additional source code directory"
1678	printf "\n \"$add_source_path\" "
1679	printf "\n does not exist or is not a directory."
1680	printf "\n No source code will be used from this directory!\n"
1681	add_source_path=""
1682	sleep 3
1683	else
1684
1685	cd $add_source_path
1686	found=false
1687
1688	Names=$(ls -1 *.f90 2>&1)
1689	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1690	Names=$(ls -1 *.F90 2>&1)
1691	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1692	Names=$(ls -1 *.F 2>&1)
1693	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1694	Names=$(ls -1 *.f 2>&1)
1695	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1696	Names=$(ls -1 *.c 2>&1)
1697	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1698
1699	cd - > /dev/null
1700	cd SOURCES_FOR_RUN_$fname
1701
1702	# COPY MAKEFILE IF EXISTING
1703	if [[ -f $add_source_path/Makefile ]]
1704	then
1705	printf "\n\n *** user Makefile from directory"
1706	printf "\n \"$add_source_path\" is used \n"
1707	sleep 1
1708	cp $add_source_path/Makefile .
1709	fi
1710
1711	for dateiname in $AddFilenames
1712	do
1713	if [[ -f $dateiname ]]
1714	then
1715	printf "\n +++ source code file \"$dateiname\" found in additional"
1716	printf "\n source code directory \"$add_source_path\" "
1717	printf "\n but was also given with option \"-s\" which means that it should be taken"
1718	printf "\n from directory \"$source_path\"."
1719	locat=source; exit
1720	fi
1721
1722	cp $add_source_path/$dateiname .
1723	source_list="$source_list $dateiname"
1724
1725	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1726	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1727	then
1728	printf "\n\n +++ user file \"$dateiname\" "
1729	printf "\n is not listed in Makefile \n"
1730	locat=source; exit
1731	else
1732
1733	# Default User-Interface von der Liste entfernen, falls Datei
1734	# ein User-Interface enthaelt
1735	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1736	# then
1737	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1738	# then
1739	# rm -rf user_interface.f90
1740	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1741	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1742	# printf "\n since a user-interface is found in file"
1743	# printf "\n \"$add_source_path/$dateiname\" \n"
1744	# sleep 3
1745	# else
1746	if [[ $found = false ]]
1747	then
1748	found=true
1749	printf "\n\n *** following user file(s) added to the"
1750	printf " files to be translated:\n "
1751	fi
1752	printf "$dateiname "
1753	sleep 0.5
1754	fi
1755	done
1756	[[ $found = true ]] && printf "\n"
1757	cd - > /dev/null
1758	fi
1759	fi
1760
1761
1762	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1763	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1764	if [[ $restart_run != true && -n $package_list ]]
1765	then
1766
1767	cd $source_path
1768
1769	for package in $package_list
1770	do
1771
1772	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1773
1774	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1775	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1776	# LIEFERT
1777	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1778
1779
1780	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1781	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1782	for source_list_name in $package_source_list
1783	do
1784	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1785	then
1786
1787	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1788	ending=`echo $source_list_name \| cut -f2 -d.`
1789	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1790	then
1791	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1792	source_list="$source_list $source_list_name"
1793	fi
1794	fi
1795	done
1796	done
1797
1798	cd - > /dev/null
1799	fi
1800
1801
1802	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1803	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1804	# if [[ "$restart_run" != true ]]
1805	# then
1806	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1807	# if [[ ! -f $makefile ]]
1808	# then
1809	# printf "\n +++ file \"$makefile\" does not exist"
1810	# locat=make; exit
1811	# else
1812	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1813	# fi
1814	# fi
1815
1816	fi # do_compile=true
1817
1818
1819	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1820	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1821	if [[ $do_compile = true ]]
1822	then
1823
1824	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1825	# ZUSAMMENSETZEN
1826	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1827	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1828	then
1829	cpp_options="${cpp_options},-D__ibm=__ibm"
1830	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1831	then
1832	cpp_options="$cpp_options -D__nec"
1833	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1834	then
1835	cpp_options="$cpp_options -D__lc"
1836	else
1837	cpp_options="$cpp_options -D__$localhost"
1838	fi
1839
1840	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1841	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1842	then
1843	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1844	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1845	else
1846	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1847	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1848	fi
1849
1850	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1851	if [[ -n $package_list ]]
1852	then
1853	for package in $package_list
1854	do
1855	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1856	then
1857	if [[ $package != "dvrp_graphics+1PE" ]]
1858	then
1859	cpp_options="${cpp_options},-D__$package=__$package"
1860	else
1861	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1862	export use_seperate_pe_for_dvrp_output=true
1863	fi
1864	else
1865	if [[ $package != "dvrp_graphics+1PE" ]]
1866	then
1867	cpp_options="$cpp_options -D__$package"
1868	else
1869	cpp_options="$cpp_options -D__dvrp_graphics"
1870	export use_seperate_pe_for_dvrp_output=true
1871	fi
1872	fi
1873	done
1874	fi
1875
1876	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1877	if [[ -n $cpp_opts ]]
1878	then
1879	for popts in $cpp_opts
1880	do
1881	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1882	then
1883	cpp_options="${cpp_options},-D__$popts=__$popts"
1884	else
1885	cpp_options="$cpp_options -D__$popts"
1886	fi
1887	done
1888	fi
1889
1890	else
1891
1892
1893	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1894	if [[ $do_remote = false ]]
1895	then
1896	if [[ ! -f $executable ]]
1897	then
1898	printf "\n +++ executable file: $executable"
1899	printf "\n does not exist"
1900	locat=executable; exit
1901	fi
1902	fi
1903	fi
1904
1905
1906	# JOBMODUS FESTSTELLEN
1907	if [[ "$ENVIRONMENT" = BATCH && $localhost != lctit \|\| "$QUEUE" != interactive && $localhost = lctit ]]
1908	then
1909	jobmo=BATCH
1910	else
1911	jobmo=INTERACTIVE
1912	fi
1913
1914
1915	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1916	# DURCH BENUTZER ANDERWEITIG VEREINBART
1917	if [[ "$compiler_name" = "" ]]
1918	then
1919
1920	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
1921	locat=compiler_name; exit
1922
1923	fi
1924
1925
1926	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
1927	[[ $localhost = necriam ]] && compiler_name=mpif90
1928
1929
1930
1931	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
1932	kennung=$RANDOM
1933	if [[ "$tmp_user_catalog" = "" ]]
1934	then
1935	if [[ $localhost = ibmb \|\| $localhost = ibmh ]]
1936	then
1937	tmp_user_catalog=$TMPDIR
1938	elif [[ $localhost = nech ]]
1939	then
1940	tmp_user_catalog=$WRKSHR
1941	else
1942	tmp_user_catalog=/tmp
1943	fi
1944	fi
1945	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
1946
1947
1948	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
1949	# BESTIMMEN
1950	if [[ "$tmp_data_catalog" = "" ]]
1951	then
1952	if [[ $localhost = ibmb \|\| $localhost = ibmh ]]
1953	then
1954	tmp_data_catalog=$WORK/mrun_restart_data
1955	elif [[ $localhost = nech ]]
1956	then
1957	tmp_data_catalog=$WRKSHR/mrun_restart_data
1958	else
1959	tmp_data_catalog=/tmp/mrun_restart_data
1960	fi
1961	fi
1962
1963
1964	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
1965	# ERSETZEN
1966	if [[ $do_remote = false && $do_compile = true ]]
1967	then
1968	eval fopts=\"$fopts\"
1969	eval lopts=\"$lopts\"
1970	fi
1971
1972
1973
1974	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
1975	fopts="$fopts $netcdf_inc $dvr_inc"
1976	lopts="$lopts $netcdf_lib $dvr_lib"
1977	ROPTS="$ropts"
1978	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxt4 ) && -n $numprocs ]]
1979	then
1980	XOPT="-X $numprocs"
1981	fi
1982
1983
1984
1985	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
1986	# GRAMM BENOETIGT
1987	done=false
1988	while [[ $done = false ]]
1989	do
1990	cputime=$cpumax
1991	if (( $cputime == 0 ))
1992	then
1993	if [[ $do_batch = true ]]
1994	then
1995	printf "\n +++ cpu-time is undefined"
1996	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
1997	printf "\n >>> "
1998	read cputime 1>/dev/null 2>&1
1999	else
2000	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
2001	fi
2002	else
2003	done=true
2004	fi
2005	cpumax=$cputime
2006	done
2007
2008	(( minuten = cputime / 60 ))
2009	(( sekunden = cputime - minuten * 60 ))
2010
2011
2012	# PRUEFEN DER KERNSPEICHERANFORDERUNG
2013	if [[ $do_batch = true ]]
2014	then
2015	done=false
2016	while [[ $done = false ]]
2017	do
2018	if (( memory == 0 ))
2019	then
2020	printf "\n +++ memory demand is undefined"
2021	printf "\n >>> Please type memory in MByte per process as INTEGER:"
2022	printf "\n >>> "
2023	read memory 1>/dev/null 2>&1
2024	else
2025	done=true
2026	fi
2027	done
2028	fi
2029
2030
2031	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
2032	if [[ $do_remote = true && -z $remote_username ]]
2033	then
2034	while [[ -z $remote_username ]]
2035	do
2036	printf "\n +++ username on remote host \"$host\" is undefined"
2037	printf "\n >>> Please type username:"
2038	printf "\n >>> "
2039	read remote_username
2040	done
2041	mc="$mc -u$remote_username"
2042	fi
2043
2044
2045	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
2046	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2047	then
2048	[[ "$mpilib" = "" ]] && export mpilib=mpt
2049	fi
2050
2051
2052
2053	###########################################################################
2054	# HEADER-AUSGABE
2055	###########################################################################
2056
2057
2058	calltime=$(date)
2059	printf "\n"
2060	# [[ $silent = false ]] && clear
2061	printf "#--------------------------------------------------------------# \n"
2062	printf "\| $version$calltime \| \n"
2063	printf "\| \| \n"
2064	spalte1="called on:"; spalte2=$localhost_realname
2065	printf "\| $spalte1$spalte2 \| \n"
2066	if [[ $local_compile = false ]]
2067	then
2068	if [[ $do_remote = true ]]
2069	then
2070	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2071	else
2072	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2073	fi
2074	else
2075	spalte1="compiling test only!"; spalte2=""
2076	fi
2077	printf "\| $spalte1$spalte2 \| \n"
2078	if [[ -n $numprocs ]]
2079	then
2080	spalte1="number of PEs:"; spalte2=$numprocs
2081	printf "\| $spalte1$spalte2 \| \n"
2082	fi
2083	if [[ -n $tasks_per_node ]]
2084	then
2085	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2086	printf "\| $spalte1$spalte2 \| \n"
2087	fi
2088	if [[ $threads_per_task != 1 ]]
2089	then
2090	spalte1="threads per task:"; spalte2="$threads_per_task"
2091	printf "\| $spalte1$spalte2 \| \n"
2092	fi
2093	printf "\| \| \n"
2094	if [[ $do_compile = true ]]
2095	then
2096	spalte1=cpp-directives:; spalte2=$cpp_options
2097	printf "\| $spalte1$spalte2 \| \n"
2098	zeile=$(echo "$cpp_options" \| cut -c41-)
2099	while [[ "$zeile" != "" ]]
2100	do
2101	spalte1=""
2102	spalte2=$zeile
2103	printf "\| $spalte1$spalte2 \| \n"
2104	zeile=$(echo "$zeile" \| cut -c41-)
2105	done
2106
2107	spalte1=compiler-options:; spalte2="$fopts"
2108	printf "\| $spalte1$spalte2 \| \n"
2109	zeile=$(echo "$fopts" \| cut -c41-)
2110	while [[ "$zeile" != "" ]]
2111	do
2112	spalte1=""
2113	spalte2=$zeile
2114	printf "\| $spalte1$spalte2 \| \n"
2115	zeile=$(echo "$zeile" \| cut -c41-)
2116	done
2117
2118	spalte1=linker-options:; spalte2=$lopts
2119	printf "\| $spalte1$spalte2 \| \n"
2120	zeile=$(echo "$lopts" \| cut -c41-)
2121	while [[ "$zeile" != "" ]]
2122	do
2123	spalte1=""
2124	spalte2=$zeile
2125	printf "\| $spalte1$spalte2 \| \n"
2126	zeile=$(echo "$zeile" \| cut -c41-)
2127	done
2128
2129	spalte1="main program":; spalte2=$mainprog
2130	printf "\| $spalte1$spalte2 \| \n"
2131	else
2132	spalte1=executable:; spalte2=$executable
2133	printf "\| $spalte1$spalte2 \| \n"
2134	fi
2135	printf "\| \| \n"
2136	spalte1="base name of files":; spalte2=$fname
2137	printf "\| $spalte1$spalte2 \| \n"
2138	if [[ $fname != $afname ]]
2139	then
2140	spalte1="base name of input files":; spalte2=$afname
2141	printf "\| $spalte1$spalte2 \| \n"
2142	fi
2143	spalte1="INPUT control list":; spalte2=$input_list
2144	printf "\| $spalte1$spalte2 \| \n"
2145	spalte1="OUTPUT control list":; spalte2=$output_list
2146	printf "\| $spalte1$spalte2 \| \n"
2147
2148	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2149	then
2150	spalte1="memory demand / PE":; spalte2="$memory MB"
2151	printf "\| $spalte1$spalte2 \| \n"
2152	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2153	printf "\| $spalte1$spalte2 \| \n"
2154	fi
2155
2156	if [[ $do_compile = true ]]
2157	then
2158	printf "\| \| \n"
2159	printf "\| Files to be compiled: \| \n"
2160	zeile=$source_list
2161	while [[ "$zeile" != "" ]]
2162	do
2163	spalte3=$zeile
2164	printf "\| $spalte3 \| \n"
2165	zeile=$(echo "$zeile" \| cut -c61-)
2166	done
2167	fi
2168	printf "#--------------------------------------------------------------#"
2169
2170
2171
2172	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2173	if [[ $do_trace = true ]]
2174	then
2175	(( i = 0 ))
2176	while (( i < iin ))
2177	do
2178	(( i = i + 1 ))
2179	if (( i == 1 ))
2180	then
2181	printf "\n\n >>> INPUT-file assignments:\n"
2182	fi
2183	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2184	done
2185	(( i = 0 ))
2186	while (( i < iout ))
2187	do
2188	(( i = i + 1 ))
2189	if (( i == 1 ))
2190	then
2191	printf "\n\n >>> OUTPUT-file assignments:\n"
2192	fi
2193	printf "\n ${localout[$i]} : ${pathout[$i]}"
2194	done
2195	(( i = 0 ))
2196	while (( i < iic ))
2197	do
2198	(( i = i + 1 ))
2199	if (( i == 1 ))
2200	then
2201	printf "\n\n >>> INPUT-commands:\n"
2202	fi
2203	printf "\n ${in_command[$i]}"
2204	done
2205	(( i = 0 ))
2206	while (( i < ioc ))
2207	do
2208	(( i = i + 1 ))
2209	if (( i == 1 ))
2210	then
2211	printf "\n\n >>> OUTPUT-commands:\n"
2212	fi
2213	printf "\n ${out_command[$i]}"
2214	done
2215	fi
2216
2217
2218	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2219	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2220	then
2221	antwort=dummy
2222	printf "\n\n"
2223	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2224	do
2225	printf " >>> everything o.k. (y/n) ? "
2226	read antwort
2227	done
2228	if [[ $antwort = n \|\| $antwort = N ]]
2229	then
2230	locat=user_abort; (( iec = 0 )); exit
2231	fi
2232	if [[ $do_batch = true ]]
2233	then
2234	printf " >>> batch-job will be created and submitted"
2235	else
2236	if [[ $local_compile = false ]]
2237	then
2238	printf " >>> MRUN will now continue to execute on this machine"
2239	else
2240	printf " >>> a test compilation will now be carried out on this machine"
2241	fi
2242	fi
2243	fi
2244
2245
2246
2247
2248	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2249	# CHENDE AKTIONEN DURCHGEFUEHRT
2250	if [[ $do_batch = false ]]
2251	then
2252
2253
2254	# TEMPORAEREN KATALOG ERZEUGEN
2255	mkdir -p $TEMPDIR
2256	chmod go+rx $TEMPDIR
2257	tmpcreate=true
2258
2259
2260	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2261	# TEMPORAERES VERZEICHNIS KOPIEREN
2262	if [[ $do_compile = true ]]
2263	then
2264
2265	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2266	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2267	if [[ $localhost = nech ]]
2268	then
2269	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2270	if mkdir -p $TEMPDIR_COMPILE
2271	then
2272	printf "\n *** \"$TEMPDIR_COMPILE\" "
2273	printf "\n is generated as temporary directory for cross compiling\n"
2274	else
2275	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2276	printf "\n needed for cross compilation failed"
2277	locat=compile
2278	exit
2279	fi
2280	else
2281	TEMPDIR_COMPILE=$TEMPDIR
2282	fi
2283
2284
2285	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2286	line=""
2287	grep "%depository_path" $config_file > tmp_mrun
2288	while read line
2289	do
2290	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2291	then
2292	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2293	then
2294	global_depository_path=`echo $line \| cut -d" " -s -f2`
2295	fi
2296	fi
2297	done < tmp_mrun
2298
2299	line=""
2300	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2301	while read line
2302	do
2303	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2304	then
2305	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2306	then
2307	local_depository_path=`echo $line \| cut -d" " -s -f2`
2308	fi
2309	fi
2310	done < tmp_mrun
2311
2312	if [[ "$local_depository_path" = "" ]]
2313	then
2314	if [[ "$global_depository_path" != "" ]]
2315	then
2316	local_depository_path=$global_depository_path
2317	else
2318	printf "\n\n +++ no depository path found in configuration file"
2319	printf "\n for local host \"$localhost\" "
2320	printf "\n please set \"\%depository_path\" in configuration file\n"
2321	locat=config_file; exit
2322	fi
2323	fi
2324	eval local_depository_path=$local_depository_path
2325	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2326	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2327
2328
2329	basename=`print $mainprog \| cut -f1 -d"."`
2330	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2331	if [[ ! -f $make_depository ]]
2332	then
2333	printf "\n"
2334	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2335	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2336	else
2337	cp $make_depository $TEMPDIR_COMPILE
2338	cd $TEMPDIR_COMPILE
2339	tar -xf $make_depository > /dev/null 2>&1
2340	cd - > /dev/null
2341	fi
2342
2343	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2344
2345	# FALLS USER-INTERFACE VORHANDEN UND AUF DATEI MIT ANDEREM NAMEN
2346	# ALS user_interface.f90 LIEGT, DIESEN GEAENDERTEN NAMEN INS
2347	# MAKEFILE EINTRAGEN
2348	# cd $TEMPDIR_COMPILE
2349	# interface_file=`grep -l "END SUBROUTINE user_parin" $source_list`
2350	# if [[ "$interface_file" != "" ]]
2351	# then
2352	# interface_file=`echo $interface_file \| cut -d"." -f1`
2353	# mv Makefile Makefile_old
2354	# sed "s/user_interface/$interface_file/g" Makefile_old > Makefile
2355	# fi
2356	# cd - > /dev/null
2357	else
2358	cp $executable ${TEMPDIR}/a.out
2359	fi
2360
2361
2362	# WECHSEL IN TEMPORAEREN KATALOG
2363	cd $TEMPDIR
2364	printf "\n *** changed to temporary directory: $TEMPDIR"
2365
2366
2367	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2368	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2369	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2370	# ERMITTELN
2371	(( i = 0 ))
2372	while (( i < iout ))
2373	do
2374	(( i = i + 1 ))
2375	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2376	then
2377	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2378	else
2379	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2380	fi
2381	done
2382
2383
2384	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2385	if [[ $do_compile = true ]]
2386	then
2387
2388
2389	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2390	printf "\n\n\n *** compilation starts \n$striche\n"
2391	printf " *** compilation with make using following options:\n"
2392	printf " make depository: $make_depository"
2393	printf " compilername: $compiler_name\n"
2394	printf " options: $fopts\n"
2395	printf " preprocessor-directives: $cpp_options \n"
2396	printf " linker-options: $lopts \n"
2397	printf " source code files: $source_list \n"
2398
2399	if [[ $localhost = nech ]]
2400	then
2401	ssh 136.172.44.192 -l $usern ". /SX/opt/etc/initsx.sh; cd \$HOME/work/${usern}.$kennung; sxmake -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2402	cp $TEMPDIR_COMPILE/a.out .
2403	[[ $? != 0 ]] && compile_error=true
2404	rm -rf $TEMPDIR_COMPILE
2405	elif [[ $localhost = lcsgib ]]
2406	then
2407	printf " compiler is called via ssh on \"bicegate\" using module \"$mpilib\" \n"
2408	ssh 130.73.232.102 -l $usern ". /usr/share/modules/init/bash; module load $mpilib; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2409	[[ ! -f a.out ]] && compile_error=true
2410	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2411	elif [[ $localhost = lcsgih ]]
2412	then
2413	printf " compiler is called via ssh on \"hicegate2\" using module \"$mpilib\" \n"
2414	ssh 130.75.4.103 -l $usern ". /usr/share/modules/init/bash; module load $mpilib; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2415	[[ ! -f a.out ]] && compile_error=true
2416	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2417	else
2418	[[ $localhost = lctit ]] && export LM_LICENSE_FILE=27050@tggls
2419	make -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2420	fi
2421
2422	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2423	then
2424	printf "\n +++ error occured while compiling or linking"
2425	locat=compile
2426
2427	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
2428	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
2429	# then
2430	exit
2431	# else
2432	# locat=normal
2433	# fi
2434	else
2435	printf "$striche\n *** compilation finished \n"
2436	fi
2437	fi
2438
2439
2440	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2441	if [[ $local_compile = true ]]
2442	then
2443	cd $HOME
2444	rm -rf $TEMPDIR
2445	locat=local_compile; exit
2446	fi
2447
2448
2449	# BEREITSTELLEN DER INPUT-DATEIEN
2450	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2451	(( i = 0 ))
2452	while (( i < iin ))
2453	do
2454	(( i = i + 1 ))
2455	if (( i == 1 ))
2456	then
2457	printf "\n\n *** providing INPUT-files:\n$striche"
2458	fi
2459
2460
2461	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2462	if [[ "${transin[$i]}" = unavailable ]]
2463	then
2464	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2465	then
2466	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2467	printf "\n is not available!"
2468	else
2469	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2470	printf "\n is not available!"
2471	fi
2472	continue
2473	fi
2474
2475	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2476	files_for_pes=false; datentyp=file
2477	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2478	then
2479	files_for_pes=true; datentyp=directory
2480	actionin[$i]=""
2481	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2482	then
2483	actionin[$i]=""
2484	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2485	then
2486	files_for_pes=true; datentyp=directory
2487	actionin[$i]="ar"
2488	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2489	then
2490	actionin[$i]="ar"
2491	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2492	then
2493	files_for_pes=true; datentyp=directory
2494	actionin[$i]="fl"
2495	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2496	then
2497	actionin[$i]="fl"
2498	fi
2499
2500	if [[ $files_for_pes = true ]]
2501	then
2502	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
2503	else
2504	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
2505	fi
2506
2507	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
2508	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
2509	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
2510	# SERVER ZU HOLEN
2511	if [[ "${actionin[$i]}" = fl ]]
2512	then
2513	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
2514	if [[ $files_for_pes = false ]]
2515	then
2516	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
2517	then
2518	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
2519	got_tmp[$i]=true
2520	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2521	then
2522	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2523	printf "\n *** trying to use backup copy in \"$WORK\" "
2524	cp $WORK/${frelin[$i]} ${localin[$i]}
2525	else
2526	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2527	printf "\n or \"$tmp_data_catalog\" does not exist!"
2528	printf "\n *** trying to get copy from archive"
2529	actionin[$i]=ar
2530	fi
2531	else
2532	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
2533	then
2534	mkdir ${localin[$i]}
2535	cd $tmp_data_catalog/${frelin[$i]}
2536	for file in $(ls *)
2537	do
2538	ln $file $TEMPDIR/${localin[$i]}
2539	done
2540	cd $TEMPDIR
2541	got_tmp[$i]=true
2542	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2543	then
2544	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2545	printf "\n *** trying to use backup copy in \"$WORK\" "
2546	cp -r $WORK/${frelin[$i]} ${localin[$i]}
2547	else
2548	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2549	printf "\n or \"$tmp_data_catalog\" does not exist!"
2550	printf "\n *** trying to get copy from archive"
2551	actionin[$i]=ar
2552	fi
2553	fi
2554	fi
2555
2556
2557	# DATEI LIEGT AUF ARCHIV-SERVER
2558	if [[ "${actionin[$i]}" = ar ]]
2559	then
2560
2561	if [[ $files_for_pes = false ]]
2562	then
2563	printf "\n file will be restored from archive-system ($archive_system)!"
2564	else
2565	printf "\n directory will be restored from archive-system ($archive_system)!"
2566	fi
2567
2568	file_restored=false
2569
2570	if [[ $archive_system = asterix ]]
2571	then
2572	do_stagein=true
2573	(( stagein_anz = 0 ))
2574	while [[ $do_stagein = true ]]
2575	do
2576	if [[ $files_for_pes = false ]]
2577	then
2578	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
2579	else
2580	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
2581	fi
2582	cat STAGEIN_OUTPUT
2583	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
2584	then
2585	file_restored=true
2586	do_stagein=false
2587	else
2588	(( stagein_anz = stagein_anz + 1 ))
2589	if (( stagein_anz == 10 ))
2590	then
2591	printf "\n +++ stagein stoped after 10 tries"
2592	locat=stage
2593	exit
2594	fi
2595	printf "\n +++ restoring from archive failed, trying again:"
2596	sleep 900
2597	fi
2598	done
2599	elif [[ $archive_system = DMF ]]
2600	then
2601	if [[ $files_for_pes = false ]]
2602	then
2603	printf "\n +++ restoring of single files impossible with $archive_system !\n"
2604	locat=DMF
2605	exit
2606	else
2607	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
2608	cp -r $ARCHIVE/${frelin[$i]} $PWD
2609	file_restored=true
2610	fi
2611	elif [[ $archive_system = tivoli ]]
2612	then
2613	if [[ $files_for_pes = false ]]
2614	then
2615	if [[ $localhost = ibmh ]]
2616	then
2617	ssh $usern@hdata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2618	else
2619	ssh $usern@bdata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2620	fi
2621	else
2622	(( inode = 0 ))
2623	while (( inode < nodes ))
2624	do
2625	if [[ $localhost = ibmh ]]
2626	then
2627	ssh $usern@hdata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2628	else
2629	ssh $usern@bdata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2630	fi
2631	(( inode = inode + 1 ))
2632	done
2633	fi
2634	file_restored=true
2635	elif [[ $archive_system = ut ]]
2636	then
2637	if [[ $files_for_pes = false ]]
2638	then
2639	cp $UT/${frelin[$i]} .
2640	else
2641	(( inode = 0 ))
2642	while (( inode < nodes ))
2643	do
2644	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
2645	(( inode = inode + 1 ))
2646	done
2647	fi
2648	file_restored=true
2649	else
2650	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
2651	locat=rearchive
2652	exit
2653	fi
2654
2655	if [[ $file_restored = true ]]
2656	then
2657
2658	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
2659	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
2660	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
2661	if [[ $files_for_pes = false ]]
2662	then
2663	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
2664	else
2665	mkdir $tmp_data_catalog/${frelin[$i]}
2666	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
2667	fi
2668	got_tmp[$i]=true
2669
2670	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
2671	mv ${frelin[$i]} ${localin[$i]}
2672
2673	fi
2674	fi
2675
2676
2677	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
2678	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
2679	then
2680
2681	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
2682	then
2683
2684	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
2685	printf "\n file will be provided for $numprocs processors"
2686	mkdir ${localin[$i]}
2687	ival=$numprocs
2688	(( ii = 0 ))
2689	while (( ii <= ival-1 ))
2690	do
2691	if (( ii < 10 ))
2692	then
2693	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
2694	elif (( ii < 100 ))
2695	then
2696	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
2697	elif (( ii < 1000 ))
2698	then
2699	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
2700	else
2701	cp ${absnamein[$i]} ${localin[$i]}/_$ii
2702	fi
2703	(( ii = ii + 1 ))
2704	done
2705
2706	else
2707
2708	if [[ $files_for_pes = true ]]
2709	then
2710
2711	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
2712	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
2713	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
2714	# PER MOVE UMBENANNT WERDEN
2715	printf "\n providing $numprocs files for the respective processors"
2716	mkdir ${localin[$i]}
2717	if [[ $link_local_input = true ]]
2718	then
2719	printf " using ln -f\n"
2720	cd ${absnamein[$i]}
2721	for file in $(ls *)
2722	do
2723	ln -f $file ${localin[$i]}
2724	done
2725	cd $TEMPDIR
2726	fi
2727	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
2728	if [[ ! -f "${localin[$i]}/_0000" ]]
2729	then
2730	if [[ $link_local_input = true ]]
2731	then
2732	printf " ln failed for .../_0000, using cp...\n"
2733	fi
2734	cp -r ${absnamein[$i]}/* ${localin[$i]}
2735	fi
2736
2737	else
2738	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
2739	if [[ $link_local_input = true ]]
2740	then
2741	printf " using ln -f\n"
2742	ln -f ${absnamein[$i]} ${localin[$i]}
2743	fi
2744	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
2745	if [[ ! -f "${localin[$i]}" ]]
2746	then
2747	if [[ $link_local_input = true ]]
2748	then
2749	printf " ln failed, using cp...\n"
2750	fi
2751	cp ${absnamein[$i]} ${localin[$i]}
2752	fi
2753	fi
2754	fi
2755	fi
2756
2757	done
2758	if (( i != 0 ))
2759	then
2760	printf "\n$striche\n *** all INPUT-files provided \n"
2761	fi
2762
2763
2764	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
2765	(( i = 0 ))
2766	while (( i < iic ))
2767	do
2768	(( i = i + 1 ))
2769	if (( i == 1 ))
2770	then
2771	printf "\n\n *** execution of INPUT-commands:\n$striche"
2772	fi
2773	printf "\n >>> ${in_command[$i]}"
2774	eval ${in_command[$i]}
2775	if (( i == iic ))
2776	then
2777	printf "\n$striche\n"
2778	fi
2779	done
2780
2781
2782	# VERBLEIBENDE CPU-ZEIT BERECHNEN
2783	cpurest=${cpumax}.
2784
2785
2786	# START DVR STREAMING SERVER
2787	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
2788	then
2789	if [[ "$dvr_server" != "" ]]
2790	then
2791
2792	printf "\n\n *** preparing the dvr streaming server configuration file"
2793
2794	# Check, if a dvr server is already running
2795	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
2796	if [[ "$running_dvrserver_id" != "" ]]
2797	then
2798
2799	printf "\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
2800	printf "\n This server is used instead starting a new one!"
2801
2802	else
2803
2804	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
2805	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
2806	then
2807	cp ${PALM_BIN}/.dvrserver.config .
2808
2809	# Entering the BASEDIR, UID and GID into this file
2810	user_id=`id -u`
2811	group_id=`id -g`
2812	# & is needed as seperator, because TEMPDIR contains /
2813	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
2814	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
2815	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
2816	mv .dvrserver.3 .dvrserver.config
2817	rm .dvrserver.1 .dvrserver.2
2818
2819	# Start dvr server in background, get his id and print on terminal
2820	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
2821	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
2822	printf "\n *** streaming server with id=$dvrserver_id is started in background"
2823	local_dvrserver_running=.TRUE.
2824	else
2825	printf "\n +++ missing file \".dvrserver.config\" in directory:"
2826	printf "\n \"$PALM_BIN\" "
2827	locat=dvr
2828	exit
2829	fi
2830
2831	fi
2832
2833	else
2834	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
2835	fi
2836	fi
2837
2838
2839	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
2840	# LESEN VON PALM)
2841	cat > ENVPAR << %%END%%
2842	&envpar run_identifier = '$fname', host = '$localhost',
2843	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2844	maximum_cpu_time_allowed = ${cpumax}.,
2845	revision = '$global_revision',
2846	local_dvrserver_running = $local_dvrserver_running /
2847
2848	%%END%%
2849
2850
2851	# PROGRAMMSTART
2852	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
2853	PATH=$PATH:$TEMPDIR
2854
2855	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
2856	then
2857	if [[ "$ENVIRONMENT" = BATCH ]]
2858	then
2859	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
2860	then
2861	printf "\n +++ debug is allowed in interactive mode only"
2862	locat=debug
2863	exit
2864	fi
2865	fi
2866	if [[ $localhost = decalpha ]]
2867	then
2868	dxladebug a.out
2869	elif [[ $localhost = ibmb \|\| $localhost = ibmh ]]
2870	then
2871
2872	# SETUP THE IBM MPI ENVIRONMENT
2873	export MP_SHARED_MEMORY=yes
2874	export AIXTHREADS_SCOPE=S
2875	export OMP_NUM_THREADS=$threads_per_task
2876	export AUTHSTATE=files
2877	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
2878
2879	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
2880	export MP_ADAPTER_USE=shared
2881	export MP_CPU_USE=multiple
2882	export MP_TIMEOUT=1200
2883
2884	unset MP_TASK_AFFINITY
2885
2886	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
2887	#(( ii = 1 ))
2888	#while (( ii <= $numprocs ))
2889	#do
2890	# echo $localhost_realname >> hostfile
2891	# (( ii = ii + 1 ))
2892	#done
2893	#export MP_HOSTFILE=hostfile
2894
2895	if [[ "$LOADLBATCH" = yes ]]
2896	then
2897	totalview poe a.out $ROPTS
2898	else
2899	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
2900	export TVDSVRLAUNCHCMD=ssh
2901	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
2902	fi
2903	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
2904	then
2905	# CURRENTLY NO DEBUGGER ON LCSGI
2906	if [[ $run_coupled_model = true ]]
2907	then
2908	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
2909	locat=debug
2910	exit
2911	else
2912	echo "no_coupling" > runfile_atmos
2913	fi
2914	(( ii = $numprocs / $threads_per_task ))
2915	export OMP_NUM_THREADS=$threads_per_task
2916	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
2917	if [[ $threads_per_task != 1 ]]
2918	then
2919	printf "\n threads per task: $threads_per_task"
2920	fi
2921	printf "\n\n"
2922	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
2923	then
2924	# export MPI_LAUNCH_TIMEOUT=360
2925	if [[ "$totalview" = true ]]
2926	then
2927	printf "\n running totalview debugger"
2928	mpiexec_mpt -tv -n $ii ./a.out $ROPTS < runfile_atmos
2929	else
2930	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
2931	fi
2932	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
2933	then
2934	# ulimit -s 300000 # A too large stack size causes problems
2935	# export MV2_NUM_PORTS=2
2936	# export MV2_CPU_MAPPING=0:1:2:3
2937	mpiexec ./a.out $ROPTS < runfile_atmos
2938	fi
2939	else
2940	printf "\n +++ no debug available on \"$localhost\" "
2941	printf "\n or not implemented in mrun so far"
2942	locat=debug
2943	exit
2944	fi
2945	else
2946	if [[ -n $numprocs ]]
2947	then
2948
2949	# RUNNING THE PROGRAM ON PARALLEL MACHINES
2950	if [[ $(echo $host \| cut -c1-3) = ibm ]]
2951	then
2952	# SETUP THE IBM MPI ENVIRONMENT
2953	export MP_SHARED_MEMORY=yes
2954	export AIXTHREAD_SCOPE=S
2955	export OMP_NUM_THREADS=$threads_per_task
2956	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
2957	export AUTHSTATE=files
2958	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
2959	# export MP_PRINTENV=yes
2960
2961	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
2962	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
2963	export MP_WAIT_MODE=poll
2964	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
2965	# export MP_EAGER_LIMIT=65535
2966
2967	# # TESTWEISE FUER TURBOMPI (JAN 05)
2968	# export MPJ_MTAB=128
2969	# export MPJ_ALLTOALL=1
2970	# export MPJ_ALLTOALLV=1
2971
2972	if [[ "$LOADLBATCH" = yes ]]
2973	then
2974	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
2975	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
2976	then
2977	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
2978	else
2979	poe ./a.out $ROPTS
2980	fi
2981	else
2982	if [[ $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms ]]
2983	then
2984	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
2985	elif [[ $localhost = ibmy ]]
2986	then
2987	if [[ -f $hostfile ]]
2988	then
2989	cp $hostfile hostfile
2990	else
2991	(( ii = 1 ))
2992	while (( ii <= $numprocs ))
2993	do
2994	echo $localhost_realname >> hostfile
2995	(( ii = ii + 1 ))
2996	done
2997	fi
2998	export MP_HOSTFILE=hostfile
2999	./a.out -procs $tasks_per_node $ROPTS
3000	else
3001	if [[ "$host_file" = "" ]]
3002	then
3003	printf "\n +++ no hostfile given in configuration file"
3004	locat=config_file
3005	exit
3006	else
3007	eval host_file=$host_file
3008	fi
3009	export MP_HOSTFILE=$host_file
3010	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3011	fi
3012	fi
3013	elif [[ $host = nech \|\| $host = necriam ]]
3014	then
3015	(( ii = nodes ))
3016	if [[ $ii = 1 ]]
3017	then
3018	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3019	export MPIPROGINF=YES
3020	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3021	echo "*** execution on single node with mpirun"
3022	mpirun -np $numprocs ./a.out $ROPTS
3023	else
3024	(( i = 0 ))
3025	while (( i < ii ))
3026	do
3027	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3028	(( i = i + 1 ))
3029	done
3030
3031	echo "#!/bin/sh" > mpi_exec_shell
3032	echo " " >> mpi_exec_shell
3033	echo "set -u" >> mpi_exec_shell
3034	echo "F_ERRCNT=0" >> mpi_exec_shell
3035	echo "MPIPROGINV=YES" >> mpi_exec_shell
3036	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3037	echo "cpurest=$cpurest" >> mpi_exec_shell
3038	echo "fname=$fname" >> mpi_exec_shell
3039	echo "localhost=$localhost" >> mpi_exec_shell
3040	echo "return_addres=$return_addres" >> mpi_exec_shell
3041	echo "return_username=$return_username" >> mpi_exec_shell
3042	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3043	echo "write_binary=$write_binary" >> mpi_exec_shell
3044	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3045	echo " " >> mpi_exec_shell
3046	echo "export F_ERRCNT" >> mpi_exec_shell
3047	echo "export MPIPROGINV" >> mpi_exec_shell
3048	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3049	echo "export cpurest" >> mpi_exec_shell
3050	echo "export fname" >> mpi_exec_shell
3051	echo "export localhost" >> mpi_exec_shell
3052	echo "export return_addres" >> mpi_exec_shell
3053	echo "export return_username" >> mpi_exec_shell
3054	echo "export tasks_per_node" >> mpi_exec_shell
3055	echo "export write_binary" >> mpi_exec_shell
3056	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3057	echo " " >> mpi_exec_shell
3058	echo "exec ./a.out" >> mpi_exec_shell
3059
3060	chmod u+x mpi_exec_shell
3061	export MPIPROGINF=YES
3062	mpirun -f multinode_config &
3063	wait
3064
3065	fi
3066	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lctit ]]
3067	then
3068
3069	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3070	# DOES NOT EXIST
3071	if [[ $host != lcsgih && $host != lcsgib ]]
3072	then
3073	if [[ -f $hostfile ]]
3074	then
3075	cp $hostfile hostfile
3076	else
3077	(( ii = 1 ))
3078	while (( ii <= $numprocs / $threads_per_task ))
3079	do
3080	echo $localhost_realname >> hostfile
3081	(( ii = ii + 1 ))
3082	done
3083	fi
3084	eval zeile=\"`head -n $ii hostfile`\"
3085	printf "\n *** running on: $zeile"
3086	fi
3087
3088	(( ii = $numprocs / $threads_per_task ))
3089	export OMP_NUM_THREADS=$threads_per_task
3090	# echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3091	if [[ $threads_per_task != 1 ]]
3092	then
3093	printf "\n threads per task: $threads_per_task"
3094	fi
3095	if [[ $run_coupled_model = false ]]
3096	then
3097	echo "no_coupling" > runfile_atmos
3098	printf "\n\n"
3099	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3100	then
3101	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3102	then
3103	# export MPI_LAUNCH_TIMEOUT=360
3104	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3105	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3106	then
3107	# ulimit -s 300000 # A too large stack size causes problems
3108	# export MV2_NUM_PORTS=2
3109	# export MV2_CPU_MAPPING=0:1:2:3
3110	mpiexec ./a.out $ROPTS < runfile_atmos
3111	fi
3112	elif [[ $host = lcxt4 ]]
3113	then
3114	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3115	else
3116	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3117	fi
3118	else
3119
3120	# currently there is no full MPI-2 support on ICE and XT4
3121	(( iia = $numprocs_atmos / $threads_per_task ))
3122	(( iio = $numprocs_ocean / $threads_per_task ))
3123	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3124	printf "\n using $coupled_mode coupling"
3125	printf "\n\n"
3126
3127	if [[ $coupled_mode = "mpi2" ]]
3128	then
3129	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3130	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3131	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3132	then
3133
3134	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3135	then
3136	# export MPI_LAUNCH_TIMEOUT=360
3137	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3138	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3139	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3140	then
3141	# ulimit -s 300000 # A too large stack size causes problems
3142	# export MV2_NUM_PORTS=2
3143	# export MV2_CPU_MAPPING=0:1:2:3
3144	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3145	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3146	fi
3147
3148	elif [[ $host = lcxt4 ]]
3149	then
3150
3151	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3152	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3153
3154	else
3155	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3156	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3157	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3158	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3159	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3160	fi
3161	wait
3162
3163	else
3164
3165	echo "coupled_run $iia $iio" > runfile_atmos
3166	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3167	then
3168
3169	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3170	then
3171	# export MPI_LAUNCH_TIMEOUT=360
3172	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3173	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3174	then
3175	# ulimit -s 300000 # A too large stack size causes problems
3176	# export MV2_NUM_PORTS=2
3177	# export MV2_CPU_MAPPING=0:1:2:3
3178	mpiexec ./a.out $ROPTS < runfile_atmos
3179	fi
3180
3181	elif [[ $host = lcxt4 ]]
3182	then
3183
3184	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3185
3186	fi
3187	wait
3188	fi
3189
3190	# if [[ $scirocco = true ]]
3191	# then
3192	# mpiexec -machinefile hostfile -n $ii a.out $ROPTS
3193	# else
3194	# mpirun -machinefile hostfile -np $ii a.out $ROPTS
3195	# fi
3196	fi
3197	elif [[ $host = decalpha ]]
3198	then
3199	dmpirun -np $numprocs a.out $ROPTS
3200	elif [[ $host = lctit ]]
3201	then
3202	export runfile=runfile.$kennung
3203
3204	echo "cd $PWD" > $runfile
3205	echo "export OMP_NUM_THREADS=$OMP_NUM_THREADS" >> $runfile
3206	echo "export cpurest=$cpurest" >> $runfile
3207	echo "export fname=$fname" >> $runfile
3208	echo "export localhost=$localhost" >> $runfile
3209	echo "export return_addres=$return_addres" >> $runfile
3210	echo "export return_username=$return_username" >> $runfile
3211	echo "export tasks_per_node=$tasks_per_node" >> $runfile
3212	echo "export write_binary=$write_binary" >> $runfile
3213	echo "export use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> $runfile
3214	echo "./a.out" >> $runfile
3215	chmod u+x $runfile
3216
3217	if [[ "$QUEUE" = interactive ]]
3218	then
3219	mpirun -np $numprocs a.out $ROPTS
3220	else
3221	(( mem_tsubame = $memory / 1024.0 ))
3222	echo "Memory for Tsubame for each process in GB:", $mem_tsubame
3223	# n1ge -fore -g 1S060156 -mpi $numprocs -mem 4 -N palm -q $queue a.out $ROPTS
3224	/n1ge/TITECH_GRID/tools/bin/n1ge -fore -g $group_number -mpi ${numprocs}:$tasks_per_node -mem $mem_tsubame -N palm -rt $minuten -q $queue a.out $ROPTS
3225	fi
3226
3227	rm $runfile
3228	else
3229	mpprun -n $numprocs a.out $ROPTS
3230	fi
3231	[[ $? != 0 ]] && execution_error=true
3232
3233
3234	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3235	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3236	then
3237	apprentice
3238	fi
3239	else
3240	a.out $ROPTS
3241	fi
3242	fi
3243	if [[ $? != 0 \|\| $execution_error = true ]]
3244	then
3245
3246	# ABBRUCH BEI LAUFZEITFEHLER
3247	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3248	printf "\n +++ runtime error occured"
3249	locat=execution
3250	exit
3251	else
3252	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3253	printf "\n$striche\n *** execution finished \n"
3254
3255	# Stop the dvr streaming server
3256	if [[ "$dvrserver_id" != "" ]]
3257	then
3258	kill $dvrserver_id
3259	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3260	fi
3261	fi
3262
3263
3264
3265	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3266	(( i = 0 ))
3267	while (( i < ioc ))
3268	do
3269	(( i = i + 1 ))
3270	if (( i == 1 ))
3271	then
3272	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
3273	fi
3274	printf "\n >>> ${out_command[$i]}"
3275	eval ${out_command[$i]}
3276	if (( i == ioc ))
3277	then
3278	printf "\n$striche\n"
3279	fi
3280	done
3281
3282
3283	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
3284	if [[ $do_trace = true ]]
3285	then
3286	printf "\n\n"
3287	ls -al
3288	fi
3289
3290
3291
3292	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
3293	(( i = 0 ))
3294	while (( i < iout ))
3295	do
3296	(( i = i + 1 ))
3297	if (( i == 1 ))
3298	then
3299	printf "\n\n *** saving OUTPUT-files:\n$striche"
3300	fi
3301
3302	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3303	files_for_pes=false; filetyp=file
3304	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
3305	then
3306	files_for_pes=true; filetyp=directory
3307	actionout[$i]=""
3308	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
3309	then
3310	actionout[$i]=""
3311	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
3312	then
3313	files_for_pes=true; filetyp=directory
3314	actionout[$i]="ar"
3315	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
3316	then
3317	actionout[$i]="ar"
3318	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
3319	then
3320	files_for_pes=true; filetyp=directory
3321	actionout[$i]="fl"
3322	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
3323	then
3324	actionout[$i]="fl"
3325	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
3326	then
3327	files_for_pes=true; filetyp=directory
3328	actionout[$i]="tr"
3329	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
3330	then
3331	actionout[$i]="tr"
3332	fi
3333
3334	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
3335	then
3336	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
3337	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
3338	then
3339	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
3340	else
3341
3342
3343	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3344	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3345	# REMOTE-RECHNUNGEN
3346	if [[ "${actionout[$i]}" = tr ]]
3347	then
3348	if [[ $localhost != $fromhost ]]
3349	then
3350	if [[ $files_for_pes = false ]]
3351	then
3352	cps=""
3353	cst=""
3354	else
3355	cps=-c
3356	cst="/"
3357	fi
3358	if [[ $localhost = ibmh \|\| $localhost = ibmb \|\| $localhost = nech ]]
3359	then
3360
3361	# TRANSFER IN EIGENSTAENDIGEM JOB
3362	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3363	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3364	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3365	if [[ $files_for_pes = false ]]
3366	then
3367	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3368	else
3369	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
3370	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
3371	fi
3372
3373	echo "set -x" > transfer_${localout[$i]}
3374	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3375
3376	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
3377	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
3378	printf "\n or higher cycle\n"
3379	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3380
3381	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3382
3383	if [[ $localhost = nech ]]
3384	then
3385	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3386	else
3387	if [[ "$LOGNAME" = b323013 ]]
3388	then
3389	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3390	else
3391	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3392	fi
3393	fi
3394
3395	else
3396
3397	# TRANSFER INNERHALB DIESES JOBS
3398	transfer_failed=false
3399	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
3400	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
3401	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3402	[[ $? != 0 ]] && transfer_failed=true
3403
3404	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3405	# LOKALER MASCHINE ANLEGEN
3406	if [[ $transfer_failed = true ]]
3407	then
3408	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3409	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3410
3411	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3412	# ANLEGEN.
3413	eval local_catalog=${pathout[$i]}
3414	if [[ ! -d $local_catalog ]]
3415	then
3416	printf " *** local directory does not exist. Trying to create:\n"
3417	printf " $local_catalog \n"
3418	mkdir -p $local_catalog
3419	fi
3420	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3421	transfer_problems=true
3422	fi
3423	fi
3424	else
3425
3426	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
3427	actionout[$i]=""
3428	fi
3429	fi
3430
3431
3432	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3433	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3434	# REMOTE-RECHNUNGEN
3435	if [[ "${actionout[$i]}" = tra ]]
3436	then
3437	if [[ $localhost != $fromhost ]]
3438	then
3439	if [[ $localhost = ibmh \|\| $localhost = ibmb \|\| $localhost = nech ]]
3440	then
3441
3442	# TRANSFER IN EIGENSTAENDIGEM JOB
3443	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3444	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3445	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3446	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3447
3448	echo "set -x" > transfer_${localout[$i]}
3449	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3450
3451	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
3452	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
3453	printf "\n or higher cycle\n"
3454	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3455
3456	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3457
3458	if [[ $localhost = nech ]]
3459	then
3460	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3461	else
3462	if [[ $LOGNAME = b323013 ]]
3463	then
3464	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3465	else
3466	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3467	fi
3468	fi
3469
3470	else
3471
3472	# TRANSFER INNERHALB DIESES JOBS
3473	transfer_failed=false
3474	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
3475	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
3476	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3477	[[ $? != 0 ]] && transfer_failed=true
3478
3479	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3480	# LOKALER MASCHINE ANLEGEN
3481	if [[ $transfer_failed = true ]]
3482	then
3483	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3484	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3485
3486	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3487	# ANLEGEN
3488	eval local_catalog=${pathout[$i]}
3489	if [[ ! -d $local_catalog ]]
3490	then
3491	printf " *** local directory does not exist. Trying to create:\n"
3492	printf " $local_catalog \n"
3493	mkdir -p $local_catalog
3494	fi
3495
3496	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3497	transfer_problems=true
3498	fi
3499	fi
3500	else
3501
3502	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
3503	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
3504	actionout[$i]=a
3505	fi
3506	fi
3507
3508
3509	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
3510	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
3511	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
3512	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
3513	if [[ "${actionout[$i]}" = fl ]]
3514	then
3515	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3516	chmod g+rx $tmp_data_catalog
3517	if [[ $files_for_pes = false ]]
3518	then
3519	printf "\n >>> OUTPUT: ${localout[$i]} to"
3520	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3521	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
3522	else
3523	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
3524	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3525	mkdir $tmp_data_catalog/${frelout[$i]}
3526	cd ${localout[$i]}
3527	for file in $(ls *)
3528	do
3529	ln -f $file $tmp_data_catalog/${frelout[$i]}
3530	done
3531	cd $TEMPDIR
3532	fi
3533
3534
3535	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
3536	if [[ $store_on_archive_system = true ]]
3537	then
3538
3539	if [[ $archive_system = asterix ]]
3540	then
3541	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3542	if [[ $files_for_pes = false ]]
3543	then
3544	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3545	else
3546	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3547	fi
3548	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3549	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
3550	echo "then" >> archive_${frelout[$i]}
3551	echo " do_stageout=false" >> archive_${frelout[$i]}
3552	echo "else" >> archive_${frelout[$i]}
3553	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
3554	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
3555	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
3556	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
3557	if [[ $files_for_pes = false ]]
3558	then
3559	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
3560	else
3561	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
3562	fi
3563	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
3564	echo "fi" >> archive_${frelout[$i]}
3565	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3566	elif [[ $archive_system = DMF ]]
3567	then
3568	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3569	if [[ $files_for_pes = false ]]
3570	then
3571	printf "\n +++ archiving of single files impossible with $archive_system !\n"
3572	locat=DMF
3573	exit
3574	else
3575	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
3576	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
3577	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
3578	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
3579	fi
3580	elif [[ $archive_system = tivoli ]]
3581	then
3582	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3583	if [[ $files_for_pes = false ]]
3584	then
3585	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3586	echo "set -x" >> archive_${frelout[$i]}
3587	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3588	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3589	else
3590
3591	echo "set -x" >> archive_${frelout[$i]}
3592	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
3593	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3594	cd $tmp_data_catalog
3595	all_files=`ls -1 ${frelout[$i]}/*`
3596	cd - > /dev/null
3597	(( inode = 0 ))
3598	(( tp1 = tasks_per_node + 1 ))
3599	while (( inode < nodes ))
3600	do
3601	# echo "*** all_files = \"$all_files\" "
3602	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3603	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3604	# echo "*** tasks_per_node = \"$tasks_per_node\" "
3605	# echo "*** files = \"$files\" "
3606	# echo "*** all_files = \"$all_files\" "
3607	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3608	echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3609	echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3610	(( inode = inode + 1 ))
3611	done
3612	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3613	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3614	fi
3615	elif [[ $archive_system = ut ]]
3616	then
3617	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3618	if [[ $files_for_pes = false ]]
3619	then
3620	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3621	echo "set -x" >> archive_${frelout[$i]}
3622	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3623	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3624	else
3625
3626	echo "set -x" >> archive_${frelout[$i]}
3627	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
3628	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
3629	cd $tmp_data_catalog
3630	all_files=`ls -1 ${frelout[$i]}/*`
3631	cd - > /dev/null
3632	(( inode = 0 ))
3633	(( tp1 = tasks_per_node + 1 ))
3634	while (( inode < nodes ))
3635	do
3636	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3637	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3638	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3639	(( inode = inode + 1 ))
3640	done
3641	fi
3642	elif [[ $archive_system = none ]]
3643	then
3644	printf " +++ archiving on $localhost not available!\n"
3645	fi
3646
3647	if [[ $archive_system != none ]]
3648	then
3649	if [[ $localhost = ibmh \|\| $localhost = ibmb ]]
3650	then
3651	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
3652	subjob -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
3653	elif [[ $localhost = nech ]]
3654	then
3655	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
3656	fi
3657	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3658	fi
3659	else
3660	printf " +++ caution: option -A is switched on. No archiving on $archive_system!\n"
3661	fi
3662
3663
3664	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
3665	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
3666	if [[ $files_for_pes = false ]]
3667	then
3668	cat /dev/null > ${pathout[$i]}
3669	else
3670	mkdir -p ${pathout[$i]}
3671	fi
3672
3673	fi
3674
3675
3676	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
3677	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
3678	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
3679	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
3680	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
3681	# GEMAESSEN ARCHIVIERUNGEN GESETZT
3682	if [[ "${actionout[$i]}" = ar ]]
3683	then
3684	if [[ $files_for_pes = false ]]
3685	then
3686	printf "\n >>> OUTPUT: ${localout[$i]} to"
3687	printf "\n ${pathout[$i]}"
3688	printf "\n File will be copied to archive-system ($archive_system) !\n"
3689	else
3690	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
3691	printf "\n ${pathout[$i]}"
3692	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
3693	fi
3694	mv ${localout[$i]} ${frelout[$i]}
3695
3696	file_saved=false
3697
3698	if [[ $archive_system = asterix ]]
3699	then
3700	do_stageout=true
3701	(( stageout_anz = 0 ))
3702	while [[ $do_stageout = true ]]
3703	do
3704	if [[ $files_for_pes = false ]]
3705	then
3706	stageout ${frelout[$i]} > STAGE_OUTPUT
3707	else
3708	stageout -t ${frelout[$i]} > STAGE_OUTPUT
3709	fi
3710	cat STAGE_OUTPUT
3711	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
3712	then
3713	file_saved=true
3714	do_stageout=false
3715	else
3716	if [[ $files_for_pes = false ]]
3717	then
3718	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
3719	else
3720	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
3721	fi
3722	(( stageout_anz = stageout_anz + 1 ))
3723	if (( stageout_anz == 10 ))
3724	then
3725	printf "\n +++ stoped after 10 unsuccessful tries!"
3726	archive_save=false
3727	do_stageout=false
3728	else
3729	printf "\n *** new try to store on archive after 15 min:"
3730	sleep 900
3731	fi
3732	fi
3733	done
3734	elif [[ $archive_system = DMF ]]
3735	then
3736	if [[ $files_for_pes = false ]]
3737	then
3738	printf "\n +++ archiving of single files impossible on $archive_system!\n"
3739	locat=DMF
3740	exit
3741	else
3742	rm -rf $ARCHIVE/${frelout[$i]}
3743	cp -r ${frelout[$i]} $ARCHIVE
3744	fi
3745	file_saved=true
3746	elif [[ $archive_system = tivoli ]]
3747	then
3748	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
3749	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
3750	# GELEGT WERDEN
3751	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3752	chmod g+rx $tmp_data_catalog
3753	if [[ $files_for_pes = false ]]
3754	then
3755	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
3756	else
3757	mkdir $tmp_data_catalog/${frelout[$i]}
3758	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
3759	fi
3760
3761	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
3762	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
3763	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
3764	if [[ $files_for_pes = false ]]
3765	then
3766	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3767	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3768	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3769	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3770	else
3771	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3772	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3773	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3774	fi
3775
3776	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
3777	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3778	file_saved=true
3779
3780	elif [[ $archive_system = ut ]]
3781	then
3782	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
3783	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
3784	# GELEGT WERDEN
3785	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3786	chmod g+rx $tmp_data_catalog
3787	if [[ $files_for_pes = false ]]
3788	then
3789	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
3790	else
3791	mkdir $tmp_data_catalog/${frelout[$i]}
3792	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
3793	fi
3794
3795	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
3796	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
3797	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
3798	if [[ $files_for_pes = false ]]
3799	then
3800	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3801	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3802	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3803	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3804	else
3805	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3806	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3807	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3808	fi
3809
3810	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
3811	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3812	file_saved=true
3813
3814	else
3815	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
3816	archive_save=false
3817	fi
3818	if [[ $file_saved = true ]]
3819	then
3820	if [[ $files_for_pes = false ]]
3821	then
3822	cat /dev/null > ${pathout[$i]}
3823	else
3824	mkdir -p ${pathout[$i]}
3825	fi
3826	fi
3827	fi
3828
3829	# APPEND AUF LOKALER MASCHINE
3830	if [[ "${actionout[$i]}" = "a" ]]
3831	then
3832	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
3833	cat ${localout[$i]} >> ${pathout[$i]}
3834	fi
3835
3836	# KOPIEREN AUF LOKALER MASCHINE
3837	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
3838	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
3839	then
3840
3841	# KOPIEREN AUF EINPROZESSORMASCHINE
3842	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
3843	then
3844	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
3845	if [[ $link_local_output = true ]]
3846	then
3847	printf " using ln -f\n"
3848	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
3849	fi
3850	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
3851	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
3852	then
3853	if [[ $link_local_output = true ]]
3854	then
3855	printf " ln failed, using cp...\n"
3856	fi
3857	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
3858	fi
3859	else
3860	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
3861	if [[ $link_local_output = true ]]
3862	then
3863	printf " using ln -f\n"
3864	ln -f ${localout[$i]} ${pathout[$i]}
3865	fi
3866	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
3867	if [[ ! -f "${pathout[$i]}" ]]
3868	then
3869	if [[ $link_local_output = true ]]
3870	then
3871	printf " ln failed, using cp...\n"
3872	fi
3873	cp ${localout[$i]} ${pathout[$i]}
3874	fi
3875	fi
3876
3877	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
3878	then
3879
3880	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
3881	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
3882	# WIRD DANN KOPIERT
3883	# PER MOVE UMBENANNT WERDEN
3884	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
3885	if [[ $link_local_output = true ]]
3886	then
3887	printf " using ln -f\n"
3888	mkdir ${pathout[$i]}
3889	cd ${localout[$i]}
3890	for file in $(ls *)
3891	do
3892	ln -f $file ${pathout[$i]}
3893	done
3894	cd $TEMPDIR
3895	fi
3896	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
3897	if [[ ! -f "${pathout[$i]}/_0000" ]]
3898	then
3899	if [[ $link_local_output = true ]]
3900	then
3901	printf " ln failed for .../_0000, using cp...\n"
3902	fi
3903	cp -r ${localout[$i]} ${pathout[$i]}
3904	fi
3905
3906	fi
3907	fi
3908	done
3909	if (( i != 0 ))
3910	then
3911	if [[ $transfer_problems = true ]]
3912	then
3913	printf "\n$striche\n *** OUTPUT-files saved"
3914	printf "\n +++ WARNING: some data transfers failed! \n"
3915	else
3916	printf "\n$striche\n *** all OUTPUT-files saved \n"
3917	fi
3918	fi
3919
3920
3921	# EVENTUELL FOLGEJOB STARTEN
3922	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
3923	if [[ -f CONTINUE_RUN ]]
3924	then
3925
3926	if [[ $archive_save = true ]]
3927	then
3928
3929	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
3930	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
3931	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
3932	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
3933	# HANDEN
3934	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
3935	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
3936	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
3937	if [[ $(echo $mc \| grep -c "#") != 0 ]]
3938	then
3939	mc=`echo $mc \| sed 's/#/f/g'`
3940	fi
3941
3942
3943	# JOB STARTEN
3944	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
3945	echo " $mc"
3946	printf "\n$striche\n"
3947	if [[ $localhost != $fromhost ]]
3948	then
3949
3950	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms \|\| $localhost = lctit ]]
3951	then
3952	echo "*** ssh will be used to initiate restart-runs!"
3953	echo " return_addres=\"$return_addres\" "
3954	echo " return_username=\"$return_username\" "
3955	if [[ $return_addres = 172.20.25.41 ]]
3956	then
3957	# WORKAROUND AUF SCIROCCO AM TIT
3958	print "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc " \| ssh $return_addres -l $return_username
3959	else
3960	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
3961	fi
3962	else
3963	printf "\n +++ no restart mechanism available for host \"$localhost\" "
3964	locat=restart; exit
3965	fi
3966
3967	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
3968	# DER AKTUELLE JOB ENDET
3969	sleep 30
3970
3971	else
3972
3973	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
3974	# RUFEN WERDEN, AUSSER AUF lcfimm
3975	cd $LOCAL_PWD
3976	if [[ $localhost = lcfimm ]]
3977	then
3978	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
3979	else
3980	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
3981	fi
3982	cd - > /dev/null
3983	fi
3984	printf "\n$striche\n *** restart-run initiated \n"
3985
3986
3987	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
3988	# GEHOLT WORDEN SIND, LOESCHEN
3989	(( i = 0 ))
3990	while (( i < iin ))
3991	do
3992	(( i = i + 1 ))
3993	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
3994	then
3995	rm -r $tmp_data_catalog/${frelin[$i]}
3996	fi
3997	done
3998
3999	else
4000
4001	printf "\n +++ no restart-run possible, since errors occured"
4002	printf "\n during the archive process"
4003	fi
4004
4005	fi
4006
4007
4008
4009	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4010	if [[ "$email_notification" != "" ]]
4011	then
4012
4013	if [[ $localhost != $fromhost ]]
4014	then
4015	if [[ -f CONTINUE_RUN ]]
4016	then
4017	echo "PALM restart run necessary" > email_text
4018	echo "description header of actual run:" >> email_text
4019	cat CONTINUE_RUN >> email_text
4020	echo "mrun-command to restart:" >> email_text
4021	echo "$mc" >> email_text
4022	else
4023	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4024	fi
4025	mail $email_notification < email_text
4026	printf "\n *** email notification sent to \"$email_notification\" "
4027	fi
4028	fi
4029
4030
4031
4032	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4033	cd $HOME
4034	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4035
4036	else
4037
4038
4039	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4040	# CHENDE AKTIONEN DURCHGEFUEHRT
4041
4042	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4043	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
4044	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4045	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4046	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4047	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4048	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4049	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4050	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4051	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4052	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4053	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4054	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4055	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4056	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4057	if [[ $use_openmp = true ]]
4058	then
4059	mrun_com=${mrun_com}" -O"
4060	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $threads_per_task"
4061	else
4062	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4063	fi
4064	[[ $store_on_archive_system = false ]] && mrun_com=${mrun_com}" -A"
4065	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4066	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4067	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4068	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4069	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4070	if [[ $do_remote = true ]]
4071	then
4072	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4073	fi
4074
4075
4076	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4077	jobfile=jobfile.$RANDOM
4078
4079
4080	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4081	echo "mkdir $TEMPDIR" >> $jobfile
4082	echo "cd $TEMPDIR" >> $jobfile
4083
4084
4085	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4086	if [[ $do_trace = true ]]
4087	then
4088	echo "set -x" >> $jobfile
4089	else
4090	echo "set +vx" >> $jobfile
4091	fi
4092
4093
4094	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4095	# DATEI FUER DEN JOB
4096	if [[ $( echo $host \| cut -c1-5 ) = lcsgi ]]
4097	then
4098
4099	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4100	# KOPIEREN
4101	if [[ $restart_run != true ]]
4102	then
4103	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4104	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4105	fi
4106
4107	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4108	echo "set -x" >> $jobfile
4109	echo "scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4110	echo "export SOURCES_COMPLETE=true" >> $jobfile
4111
4112	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4113	# ARBEITSVERZEICHNIS VERSCHIEBEN
4114	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4115	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4116	echo "execute_mrun=true" >> $jobfile
4117	echo " " >> $jobfile
4118
4119	else
4120
4121	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4122	# SOWIE GEGEBENENFALLS DES MAKEFILES
4123	if [[ $do_compile = true ]]
4124	then
4125
4126	source_catalog=SOURCES_FOR_RUN_$fname
4127
4128	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4129	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4130	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4131	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4132	echo "export SOURCES_COMPLETE=true" >> $jobfile
4133	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4134
4135	for filename in $source_list
4136	do
4137	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4138	echo "cat > $filename << \"%END%\"" >> $jobfile
4139	cat $source_catalog/$filename >> $jobfile
4140	echo " " >> $jobfile
4141	echo "%END%" >> $jobfile
4142	echo " " >> $jobfile
4143	done
4144
4145	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4146	echo "cat > Makefile << \"%END%\"" >> $jobfile
4147	cat $source_catalog/Makefile >> $jobfile
4148	echo " " >> $jobfile
4149	echo "%END%" >> $jobfile
4150	echo " " >> $jobfile
4151
4152	echo "cd - > /dev/null" >> $jobfile
4153
4154	fi
4155
4156
4157	# ABSPEICHERN DER KONFIGURATIONSDATEI
4158	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4159	echo "cat > $config_file << \"%END%\"" >> $jobfile
4160	cat $config_file >> $jobfile
4161	echo "%END%" >> $jobfile
4162	echo " " >> $jobfile
4163
4164
4165	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
4166	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4167	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
4168	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
4169	echo "%END%" >> $jobfile
4170	if [[ $host = lctit ]]
4171	then
4172	echo "sed 's/bin\/ksh/home2\/usr5\/mkanda\/pub\/ksh/' < $mrun_script_name > mrun_new" >> $jobfile
4173	echo "mv mrun_new $mrun_script_name" >> $jobfile
4174	fi
4175	echo "chmod u+x $mrun_script_name" >> $jobfile
4176	echo "execute_mrun=true" >> $jobfile
4177	echo " " >> $jobfile
4178
4179	fi
4180
4181
4182	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
4183	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
4184	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
4185	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
4186	if [[ $do_remote = true ]]
4187	then
4188	(( i = 0 ))
4189	while (( i < iin ))
4190	do
4191	(( i = i + 1 ))
4192	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
4193	if [[ "${transin[$i]}" = job ]]
4194	then
4195	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
4196	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
4197	echo " " >> $jobfile
4198	echo "%END%" >> $jobfile
4199	else
4200	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
4201	fi
4202
4203	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
4204	echo "if [[ \$? = 1 ]]" >> $jobfile
4205	echo "then" >> $jobfile
4206	echo " echo \" \" " >> $jobfile
4207	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
4208	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
4209	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
4210	echo " execute_mrun=false" >> $jobfile
4211	echo "fi" >> $jobfile
4212	done
4213	fi
4214
4215	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
4216	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
4217	echo "LOCAL_PWD=$working_directory" >> $jobfile
4218	echo "export LOCAL_PWD" >> $jobfile
4219
4220	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
4221	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
4222	echo "export LOCAL_MRUN_PATH" >> $jobfile
4223
4224	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
4225	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
4226	then
4227	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
4228	fi
4229
4230	# MRUN AUF ZIELRECHNER AUFRUFEN
4231	echo "set -x" >> $jobfile
4232	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
4233
4234	echo 'ls -al; echo `pwd`' >> $jobfile
4235	echo "cd \$HOME" >> $jobfile
4236	echo "rm -rf $TEMPDIR" >> $jobfile
4237
4238
4239
4240
4241	# JOB PER SUBJOB STARTEN
4242	if [[ $silent = false ]]
4243	then
4244	printf "\n "
4245	else
4246	printf "\n\n"
4247	fi
4248
4249	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog $jobfile
4250	rm -rf $jobfile
4251
4252
4253	fi # ENDE REMOTE-TEIL
4254
4255
4256
4257	# ENDE DER PROZEDUR

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