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source: palm/trunk/SCRIPTS/mrun @ 251

Last change on this file since 251 was 251, checked in by raasch, 16 years ago
updates for using RIAMs NEC-SX9
Property svn:keywords set to `Id Rev`
File size: 157.2 KB

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1	#!/bin/ksh
2	# mrun - Plot-Shellskript
3	# $Id: mrun 251 2009-03-03 02:31:06Z raasch $
4
5	# Prozedur zum Starten von Modellaeufen
6
7	# letzte Aenderung:
8	# 03/03/94 - Siggi - Entwicklungsbeginn
9	# 21/03/94 - Siggi - Entwicklungsabschluss (Version 1.0)
10	# 09/12/94 - Siggi - allexport unterbunden; statt dessen werden jetzt ein-
11	# zelne Variable exportiert. Dies ist noetig, weil an-
12	# sonsten irgendein Speicher ueberlaeuft und von mrun
13	# aufgerufene Programme (z.B. stageout) mit Fehlern
14	# abbrechen (too many arguments)
15	# 20/06/95 - Siggi - noclobber muss explizit abgeschaltet, da jetzt
16	# defaultmaessig im RRZN-Profile eingeschaltet
17	# 10/06/97 - Siggi - Zusaetzliche Option -C bei cpp, damit // nicht
18	# wegfallen
19	# 25/04/00 - Siggi - Version 1.5
20	# remote_addres und remote_user in return_addres bzw.
21	# return_username umbenannt, return_username wird dem
22	# mrun-Aufruf im Job ueber Option -U mitgegeben.
23	# Neue Variable remote_username, die beim interaktiven
24	# mrun-Aufruf zwingend ueber die neue Option -u oder
25	# in der Konfigurationsdatei angegeben werden muss.
26	# 08/02/01 - Siggi - Alle mrun-Meldungen ins englische uebersetzt,
27	# Version 1.7
28	# 05/05/02 - Siggi - Uebersetzungen mittels make-Mechanismus moeglich
29	# 21/11/02 - Siggi - ENV-Variable XLFRTEOPTS wird vor Ausfuehrung auf
30	# IBM gesetzt, um Record-Laenge der NAMELIST-Dateien,
31	# zu bestimmen; Praeprozessoroptionen haben nun alle
32	# die Form -Dtext=text, weil auf IBM sonst text durch
33	# die leere Zeichenkette ersetzt wird
34	# 01/08/03 - Siggi - Test of implementing dvrp+1PE on ibm
35	# 07/01/04 - Siggi - additional preprocessor directive for ibm included
36	# (-D$OMP=OMP) in order to avoid problems with
37	# OMP_NUM_THREADS
38	# 04/01/05 - Siggi - archiving on hanni and berni is done in separate
39	# tar files, one for each node used
40	# 07/01/04 - Siggi - old code for t3e, vpp and hpcs eliminated
41	# 09/01/05 - Siggi - workaround for getting the IP address on gfdl3
42	# 17/01/05 - Siggi - job for data transfer to local machine now within
43	# job class c1 (HLRN)
44	# 27/01/05 - Siggi - IP address workaround for gfdl3 removed
45	# 28/01/05 - Siggi - tar-filenames on $PERM (HLRN) now include the
46	# base filename and cycle number
47	# 16/02/05 - Gerald - hababai validated
48	# 14/03/05 - Siggi - abort on NEC after first runtime error (F_ERRCNT)
49	# 29/03/05 - Marcus - berni*-en0 validated
50	# 21/04/05 - Siggi - transfer-job-protocol for avs-data is no more stored
51	# 24/04/05 - Siggi - netcdf support on lcmuk
52	# 25/04/05 - Siggi - netcdf support on gfld3 (decalpha)
53	# 11/05/05 - Siggi - files with non-numeric extensions (.xxx after cycle
54	# number) can now be used within interactive runs
55	# 12/05/05 - Siggi - netcdf support on ibm
56	# 13/05/05 - Siggi - error in tar-filenames on $PERM (HLRN) removed
57	# 18/05/05 - Siggi - netcdf support on nec
58	# 24/05/05 - Siggi - netcdf support on ibms
59	# 14/06/05 - Siggi - sleep interval after submit of restart job increased
60	# to 30 seconds
61	# 28/06/05 - Siggi - bora adjusted to new intel compiler (LD_LIBRARY_
62	# PATH is temporarily set)
63	# 07/09/05 - Siggi - setting of MP_EAGER_LIMIT switched off because it
64	# caused warnings in the job protocol
65	# 20/10/05 - Siggi - update of netcdf-version on decalpha (gfdl3)
66	# 25/10/05 - Siggi - error in listing files for getting the cycle number
67	# removed
68	# 26/10/05 - Siggi - new paths for dvrp-library, transfer of catalogs
69	# realized by file attribute trpe
70	# 28/10/05 - Siggi - if existing, the file extension is output in case
71	# of missing input file - no job abort in case of
72	# missing input files with file extensions
73	# (preliminary solution)
74	# 31/10/05 - Siggi - data transfer from nech now within seperate job
75	# 04/11/05 - Siggi - netcdf 3.6.0-p1 on ibmh/ibmb
76	# 07/12/05 - Siggi - gallego and elephanta admitted
77	# 30/12/05 - Siggi - gfdl5 (ibmy) admitted
78	# 10/01/06 - Siggi - cpp directive for NetCDF 64bit support
79	# 20/01/06 - Siggi - cpp directive for ibmy
80	# 09/02/06 - Siggi - ibmy admitted for batch mode
81	# 13/04/06 - Siggi - ostria admitted
82	# 18/04/06 - Siggi - usage of OpenMP implemented (additional option -O)
83	# 10/05/06 - Siggi - environment variable XLSMPOPTS set on IBM for
84	# optimization of OpenMP runs (option stacksize is
85	# necessary for large gridpoint numbers because
86	# otherwise a segmentation fault occurs)
87	# 23/05/05 - Siggi - lctit (SUN Fire X4600) admitted
88	# 21/08/06 - Siggi - standard mrun path on scirocco is as on bora
89	# 23/08/06 - Siggi - netcdf support for scirocco (notebook)
90	# 20/09/06 - Marcus - add DVRP library on nech
91	# 24/10/06 - Siggi - Environment variables for PALM steering are written
92	# on local NAMELIST file ENVPAR
93	# 24/11/06 - Siggi - levanto admitted, maestro switched to ifc 9.1
94	# 28/11/06 - Siggi - call to interpret_config.x_levanto because of SuSe 10
95	# 06/02/07 - Siggi - add DVRP library on lcmuk
96	# 07/02/07 - Siggi - revision of source code handling, source code is
97	# now expected in directory given by source_path and
98	# not in the current working directory, source code
99	# files provided in add_source_path are allways
100	# compiled, source code to be compiled is allways
101	# sampled in SOURCES_FOR_RUN_$fname which is a
102	# subdirectory of the current working directory,
103	# -s TEST changed to -s WRITE_PERMIT or -s WP,
104	# adapted for RIAM (neck)
105	# bugfix for cycle number of output file (extout)
106	# all hpmuk-related code removed
107	# 14/02/07 - Siggi - dvrp support for neck added
108	# 28/02/07 - Siggi - empty lines in configuration file are accepted
109	# mrun_path replaced by PALM_BIN,
110	# all machines are calling interpret_config.x
111	# 14/03/07 - Siggi - fimm admitted, revision number added to terminal
112	# output
113	# 16/03/07 - Siggi - adjustments for lctit
114	# 29/03/07 - Siggi - global revision transfered to batch job by new
115	# option -G
116	# 30/03/07 - Siggi - compilation "by hand" removed, cpp-directives/options
117	# + netcdf/dvrp-options are read from configuration
118	# file, host identifier (local_host) is read from
119	# config file, code related to ftp filetransfer
120	# removed (incl. option -f)
121	# 19/06/07 - Siggi - time limit for cdata jobs increased
122	# 25/07/07 - Siggi - two sets of executables can be started on lcmuk,
123	# if new option -Y (coupling) is given,
124	# output of executables to aout_output removed,
125	# messages are immediately written to stdout instead
126	# 03/08/07 - Marcus - add XOPT="-X $numprocs" for lcfimm
127	# 09/08/07 - Marcus - workaround on lcfimm to propagate environment
128	# variables out to the nodes in coupled mode -disabled-
129	# 13/08/07 - Marcus - start local restart jobs per ssh on lcfimm
130	# 28/08/07 - Marcus - completely remove workaround on lcfimm to propagate
131	# environment variables out to the nodes in coupled mode
132	# 15/10/07 - Siggi - Preliminary adjustments for lctit, based on Jin's
133	# suggestions
134	# 19/10/07 - Marcus - further adjustments for lctit: add new optional
135	# argument -g group_number, admit all sla* node_usage
136	# queues
137	# 30/10/07 - Marcus - further adjustments for queues on lctit
138	# 14/02/08 - Bjoern - link of restart files with long file name possible
139	# 28/02/08 - Marcus - If environment variable link_local_output is set to
140	# true, mrun tries "ln -f" on local output and resorts
141	# to "cp" or "cp -r" on error
142	# 15/04/08 - Siggi - argument -c introduced to most of the subjob calls,
143	# which allows the user to choose his own job catalog
144	# by setting job_catalog in the configuration file
145	# (default is ~/job_queue),
146	# workaround for mpiexec with -env option,
147	# adjustments for lcxt4 (Bergen Center for Computational
148	# Science)
149	# 22/05/08 - Marcus - If environment variable link_local_input is set to
150	# true, mrun tries "ln -f" on local input and resorts
151	# to "cp" or "cp -r" on error
152	# 27/05/08 - Siggi - PATH is set to PALM_BIN everywhere (missing so far)
153	# 14/07/08 - Siggi - adjustments for lcsgih
154	# 08/08/08 - Marcus - typo removed in lcxt4 branch
155	# 17/09/08 - Siggi - restart mechanism adjusted for lcsgi
156	# 02/10/08 - BjornM - argument "-Y" modified, adjustments for coupled runs
157	# 21/10/08 - Siggi - bugfix for the case that -K has more than one
158	# argument
159	# 08/11/08 - Siggi - bugfix for depository path settings in configuration
160	# file
161	# 11/11/08 - Siggi - rules for using user code files changed: user
162	# code splitted into one file per subroutine,
163	# user can provide his/her own makefile, only
164	# default source-code filenames are allowed
165	# 14/11/08 - Siggi - cond1 and cond2 are part of the depository name
166	# 08/01/09 - Siggi - mpi module on sgi machines to be used can be set
167	# with environment variable mpilib
168	# 13/01/09 - Siggi - totalview on hice/bice can be used in debug mode
169	# using environment variable totalview
170	# 25/02/09 - Siggi - cputime-option (-t) is allowed to be omitted for
171	# interactive runs
172	# 02/03/09 - Siggi - adjustments for new NEC-SX9 at RIAM (necriam)
173
174
175
176	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
177
178	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
179	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
180	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
181
182	AddFilenames=""
183	additional_conditions=""
184	add_source_path=""
185	afname=""
186	archive_save=true
187	archive_system=none
188	compiler_name=""
189	cond1=""
190	cond2=""
191	config_file=.mrun.config
192	coupled_dist=""
193	coupled_mode="mpi1"
194	cpp_opts=""
195	cpp_options=""
196	cpumax=0
197	cpurest=0
198	delete_temporary_catalog=true
199	do_batch=false
200	do_compile=true
201	do_remote=false
202	do_stagein=true
203	do_stageout=true
204	do_trace=false
205	email_notification=""
206	exclude=""
207	executable=""
208	execution_error=false
209	fimm=false
210	fname=test
211	fromhost=""
212	global_revision=""
213	group_number=none
214	host=""
215	host_file=""
216	hp=""
217	ignore_archive_error=false
218	input_list=""
219	interpreted_config_file=""
220	job_catalog="~/job_queue"
221	job_on_file=""
222	keep_data_from_previous_run=false
223	link_local_input=false
224	link_local_output=false
225	localhost_realname=$(hostname)
226	local_compile=false
227	locat=normal
228	mainprog=""
229	makefile=""
230	mc=$0
231	while [[ $(echo $mc \| grep -c "/") != 0 ]]
232	do
233	mc=`echo $mc \| cut -f2- -d"/"`
234	done
235	module_files=""
236	mrun_script_name=$mc
237	netcdf_inc=""
238	netcdf_lib=""
239	netcdf_support=false
240	node_usage=default
241	numprocs=""
242	numprocs_atmos=0
243	numprocs_ocean=0
244	OOPT=""
245	openmp=false
246	output_list=""
247	package_list=""
248	punkte="..........................................................."
249	queue=none
250	read_from_config=""
251	restart_run=false
252	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
253	if [[ $return_addres = 130.75.105.158 ]]
254	then
255	return_addres=172.20.25.41
256	echo "+++ WARNING: return_addres changed to $return_addres !!!!!"
257	fi
258	return_password=""
259	return_username=$LOGNAME
260	remotecall=false
261	remote_username=""
262	run_coupled_model=false
263	run_mode=""
264	scirocco=false
265	store_on_archive_system=true
266	striche=" ----------------------------------------------------------------------------"
267	silent=false
268	source_list=""
269	source_path=SOURCE
270	tasks_per_node=""
271	threads_per_task=1
272	tmpcreate=false
273	tmp_data_catalog=""
274	transfer_problems=false
275	usern=$LOGNAME
276	working_directory=`pwd`
277	TOPT=""
278	XOPT=""
279	zeit=$( date \| cut -c 12-19 )
280
281	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
282	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
283
284	typeset -R30 calltime
285	typeset -L20 spalte1
286	typeset -L40 spalte2
287	typeset -L60 spalte3
288	typeset -L35 string1=`date`
289	typeset -L12 string2=$usern
290	typeset -L12 string3=$localhost_realname
291	typeset -L12 string4
292	typeset -L12 string5
293	typeset -L30 version="MRUN 2.0 Rev$Rev: 251 $"
294
295
296
297	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
298	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
299
300	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
301	# EXPORTIERT WERDEN
302	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
303	export group_number input_list memory numprocs output_list queue run_mode
304
305
306
307	# FEHLERBEHANDLUNG
308	# BEI EXIT:
309	trap 'rm -rf $working_directory/tmp_mrun
310	if [[ $locat != localhost ]]
311	then
312	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
313	# then
314	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
315	#MRUN-calls on $localhost
316	#
317	#date and time user localhost remotehost termination mrun-command
318	#--------------------------------------------------------------------------------------------------------------------
319	#%STATEND%
320	# chmod 666 ${mrun_path}/statistik/mrun_statistik
321	# fi
322	#
323	# # EINTRAG IN DIE STATISTIK-DATEI
324	# string4=$host
325	# string5=$locat
326	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
327	# then
328	# if [[ $do_batch = true ]]
329	# then
330	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
331	# else
332	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
333	# fi
334	# fi
335	echo " " > /dev/null
336	fi
337
338	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
339	then
340
341	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
342	(( i = 0 ))
343	while (( i < iec ))
344	do
345	(( i = i + 1 ))
346	printf "\n *** Execution of ERROR-command:\n"
347	printf " >>> ${err_command[$i]}\n"
348	eval ${err_command[$i]}
349	done
350	if [[ -n $interpreted_config_file ]] then
351	rm -rf $interpreted_config_file
352	fi
353	if [[ -n .mrun_environment ]] then
354	rm -rf .mrun_environment
355	fi
356	if [[ $tmpcreate = true ]]
357	then
358	printf "\n *** Contents of \"$TEMPDIR\":\n"
359	ls -al; cd
360	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
361	fi
362	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
363	then
364	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
365	fi
366	printf "\n\n+++ MRUN killed \n\n"
367	elif [[ $locat != control_c ]]
368	then
369	printf "\n\n --> all actions finished\n\n"
370	printf " Bye, bye $usern !!\n\n"
371	fi' exit
372
373
374	# BEI TERMINAL-BREAK:
375	trap 'rm -rf $working_directory/tmp_mrun
376	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
377	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
378	then
379	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
380	fi
381	printf "\n+++ MRUN killed by \"^C\" \n\n"
382	locat=control_c
383	exit
384	' 2
385
386
387	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
388	# BEEN SET
389	if [[ "$PALM_BIN" = "" ]]
390	then
391	printf "\n +++ environment variable PALM_BIN has not been set"
392	printf "\n please set it to the directory where the PALM scripts are located"
393	locat=palm_bin; exit
394	fi
395	export PATH=$PALM_BIN:$PATH
396
397
398
399	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
400	# FUER FOLGEJOBS BENOETIGT WIRD
401	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:Op:P:q:r:R:s:St:T:u:U:vxX:Y: option
402	do
403	case $option in
404	(a) afname=$OPTARG;;
405	(A) store_on_archive_system=false; mc="$mc -A";;
406	(b) do_batch=true; mc="$mc -b";;
407	(B) delete_temporary_catalog=false; mc="$mc -B";;
408	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
409	(C) restart_run=true; mc="$mc -C";;
410	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
411	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
412	(F) job_on_file="-D"; mc="$mc -F";;
413	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
414	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
415	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
416	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
417	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
418	(I) ignore_archive_error=true; mc="$mc -I";;
419	(k) keep_data_from_previous_run=true; mc="$mc -k";;
420	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
421	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
422	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
423	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
424	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
425	(O) use_openmp=true; mc="$mc -O";;
426	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
427	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
428	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
429	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
430	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
431	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
432	(S) read_from_config=false; mc="$mc -S";;
433	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
434	(T) tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
435	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
436	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
437	(v) silent=true; mc="$mc -v";;
438	(x) do_trace=true;set -x; mc="$mc -x";;
439	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
440	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
441	(\?) printf "\n +++ unknown option $OPTARG \n"
442	printf "\n --> type \"$0 ?\" for available options \n"
443	locat=parameter;exit;;
444	esac
445	done
446
447
448	# EVTL. POSITIONSPARAMETER EINLESEN
449	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
450	shift OPTIND-1
451
452
453	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
454	if [[ "$1" = "?" ]]
455	then
456	(printf "\n *** mrun can be called as follows:\n"
457	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -Y.. <modus>\n"
458	printf "\n Description of available options:\n"
459	printf "\n Option Description Default-Value"
460	printf "\n -a base name of input files equiv. -d"
461	printf "\n -A no archiving when using file-attribute fl"
462	printf "\n -b batch-job on local machine ---"
463	printf "\n -B do not delete temporary directory at end ---"
464	printf "\n -c configuration file .mrun.config"
465	printf "\n -d base name of files attached to program test"
466	printf "\n -D preprocessor(cpp)-directives \"\" "
467	printf "\n -F create remote job file only ---"
468	printf "\n -h execution host $localhost_realname"
469	printf "\n -i INPUT control list \"\" "
470	printf "\n -I archiving errors of previous batch-jobs"
471	printf "\n will be ignored"
472	printf "\n -k keep data from previous run"
473	printf "\n -K additional conditions for controling"
474	printf "\n usage of conditional code and"
475	printf "\n env-variables in configuration file \"\" "
476	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
477	printf "\n -M Makefile name Makefile"
478	printf "\n -n node usage (shared/not_shared) depending on -h"
479	printf "\n -o OUTPUT control list \"\" "
480	printf "\n -O use OpenMP ---"
481	printf "\n -p software package list \"\" "
482	printf "\n -q queue \"$queue\" "
483	printf "\n -r run control list (combines -i -o) \"\" "
484	printf "\n -s filenames of routines to be compiled \"\" "
485	printf "\n must end with .f, .f90, .F, or .c !"
486	printf "\n use \"..\" for more than one file and wildcards"
487	printf "\n -s TEST compiles all files with w-permit"
488	printf "\n -S config file interpreted by shellscript ---"
489	printf "\n -t allowed cpu-time in seconds (batch) 0"
490	printf "\n -T tasks per node depending on -h"
491	printf "\n -u username on remote machine \"\" "
492	printf "\n -v no prompt for confirmation ---"
493	printf "\n -x tracing of mrun for debug purposes ---"
494	printf "\n -X # of processors (on parallel machines) 1"
495	printf "\n -Y run coupled model, \"#1 #2\" with"
496	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
497	printf "\n "
498	printf "\n Possible values of positional parameter <modus>:"
499	printf "\n \"?\" - this outline \n\n") \| more
500	exit
501	elif [[ "$1" != "" ]]
502	then
503	printf "\n +++ positional parameter $1 unknown \n"
504	locat=parameter; exit
505	fi
506
507
508
509	# KURZE STARTMELDUNG
510	printf "\n*** $version "
511	printf "\n will be executed. Please wait ..."
512
513
514
515	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
516	if [[ ! -f $config_file ]]
517	then
518	printf "\n\n +++ configuration file: "
519	printf "\n $config_file"
520	printf "\n does not exist"
521	locat=connect; exit
522	fi
523
524
525	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
526	line=""
527	grep "%host_identifier" $config_file > tmp_mrun
528	while read line
529	do
530	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
531	then
532	HOSTNAME=`echo $line \| cut -d" " -s -f2`
533	host_identifier=`echo $line \| cut -d" " -s -f3`
534	if [[ $localhost_realname = $HOSTNAME ]]
535	then
536	localhost=$host_identifier
537	break
538	fi
539	fi
540	done < tmp_mrun
541
542	if [[ "$localhost" = "" ]]
543	then
544	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
545	printf "\n for local host \"$localhost_realname\"."
546	printf "\n Please add line"
547	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
548	printf "\n to the configuration file."
549	locat=localhost; exit
550	fi
551
552
553	# HOSTSPEZIFISCHE VARIABLEN SETZEN
554	case $localhost_realname in
555	(breg-en0\|berni-en0) archive_system=tivoli;;
556	(cs*) archive_system=ut;;
557	(fimm.bccs.uib.no) fimm=true;;
558	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
559	(hreg-en0\|hanni-en0) archive_system=tivoli;;
560	(scirocco) scirocco=true;;
561	esac
562
563
564
565	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
566	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
567	[[ "$afname" = "" ]] && afname=$fname
568
569
570	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
571	if [[ "$run_mode" != "" ]]
572	then
573	input_list="$input_list $run_mode"
574	output_list="$output_list $run_mode"
575	fi
576
577
578	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
579	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
580	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
581	# STARTET)
582	if [[ "$fromhost" = "" ]]
583	then
584	fromhost=$localhost
585	fi
586
587
588	# PRUEFEN, OB MRUN NUR TESTWEISE AUF DER LOKALEN MASCHINE KOMPILIEREN SOLL
589	if [[ "$source_list" = LOCAL_COMPILE_TEST ]]
590	then
591	source_list=TEST
592	local_compile=true
593	host=$localhost
594	fi
595
596
597	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
598	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
599	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
600	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
601	if [[ -n $host && "$host" != $localhost ]]
602	then
603	do_batch=true
604	do_remote=true
605	case $host in
606	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|nech\|necriam\|lcsgib\|lcsgih\|lctit\|unics\|lcxt4) true;;
607	(*) printf "\n"
608	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
609	printf "\n is not available"
610	locat=nqs; (( iec = 0 )); exit;;
611	esac
612	else
613	host=$localhost
614	fi
615
616
617	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
618	if [[ -n $additional_conditions ]]
619	then
620	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
621	cond1=`echo $additional_conditions \| cut -d" " -f1`
622	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
623	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
624	if [[ -n $dummy ]]
625	then
626	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
627	locat=options; exit
628	fi
629	fi
630
631
632	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
633	if [[ $run_coupled_model = true ]]
634	then
635
636	if [[ -n $coupled_dist ]]
637	then
638
639	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
640	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
641
642	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
643	then
644
645	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
646	printf "\n PEs (total) : $numprocs"
647	printf "\n PEs (atmosphere): $numprocs_atmos"
648	printf "\n PEs (ocean) : $numprocs_ocean"
649	locat=coupling; exit
650
651	# REARRANGING BECAUSE CURRENTLY ONLY 1:1 TOPOLOGIES ARE SUPPORTED
652	# THIS SHOULD BE REMOVED IN FUTURE
653	elif (( $numprocs_ocean != $numprocs_atmos ))
654	then
655
656	printf "\n +++ currently only 1:1 topologies are supported"
657	printf "\n PEs (total) : $numprocs"
658	printf "\n PEs (atmosphere): $numprocs_atmos"
659	printf "\n PEs (ocean) : $numprocs_ocean"
660	(( numprocs_atmos = $numprocs / 2 ))
661	(( numprocs_ocean = $numprocs / 2 ))
662	printf "\n +++ rearranged topology to $numprocs_atmos:$numprocs_ocean"
663
664	fi
665
666	else
667
668	(( numprocs_ocean = $numprocs / 2 ))
669	(( numprocs_atmos = $numprocs / 2 ))
670
671	fi
672	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
673
674	# GET coupled_mode FROM THE CONFIG FILE
675	line=""
676	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
677	while read line
678	do
679	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && ( $(echo $line \| cut -d" " -s -f4) = $cond1 \|\| $(echo $line \| cut -d" " -s -f4) = $cond2 ) ]]
680	then
681	coupled_mode="mpi2"
682	fi
683	done < tmp_mrun
684
685	fi
686
687
688	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
689	# ARCHIVIERUNG FEHLGESCHLAGEN IST
690	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
691	then
692	if [[ $ignore_archive_error = false ]]
693	then
694	printf "\n +++ data archiving of previous run failed"
695	printf "\n see directory \~/job_queue on remote machine"
696	locat=archive; exit
697	else
698	printf "\n +++ warning: data archiving in a previous run failed"
699	printf "\n MRUN continues, trying to get backup copy"
700	fi
701	fi
702
703
704
705	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
706	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
707	if [[ "$read_from_config" = false ]]
708	then
709
710	[[ $silent = false ]] && printf "\n Reading the configuration file... "
711	while read zeile
712	do
713	[[ $silent = false ]] && printf "."
714
715
716	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
717	# ERSETZEN
718	eval zeile=\"$zeile\"
719
720
721	# INTERPRETATION DER ZEILE
722	if [[ "$(echo $zeile)" = "" ]]
723	then
724	# LEERZEILE, KEINE AKTION
725	continue
726
727	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
728	then
729
730	# ZEILE IST KOMMENTARZEILE
731	true
732
733	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
734	then
735
736	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
737	zeile=$(echo $zeile \| cut -c2-)
738	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
739	var=`echo $zeile \| cut -d" " -f1`
740	value=`echo $zeile \| cut -d" " -s -f2`
741	for_host=`echo $zeile \| cut -d" " -s -f3`
742	for_cond1=`echo $zeile \| cut -d" " -s -f4`
743	for_cond2=`echo $zeile \| cut -d" " -s -f5`
744
745	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
746	then
747
748	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
749	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
750	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
751
752
753	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
754	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
755	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
756	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
757	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
758	# KONFIGURATIONSDATEI
759	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
760	then
761	eval $var=\$value
762
763	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
764	if [[ $do_trace = true ]]
765	then
766	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
767	fi
768	fi
769
770	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
771	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
772	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
773	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
774	if [[ $var = host ]]
775	then
776	if [[ -n $host && "$host" != $localhost ]]
777	then
778	do_batch=true
779	do_remote=true
780	case $host in
781	(ibm\|ibms\|ibmy\|lcsgib\|lcsgih\|lctit\|nech\|necriam\|unics\|lcxt4) true;;
782	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
783	printf "\n is not available"
784	locat=nqs; exit;;
785	esac
786	else
787	host=$localhost
788	fi
789	fi
790
791	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
792	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
793	# DEN PROGRAMMEN BENOETIGT WERDEN
794	export $var
795	fi
796
797
798
799
800	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
801	then
802
803	# ZEILE DEFINIERT ERROR-KOMMANDO
804	(( iec = iec + 1 ))
805	zeile=$(echo $zeile \| cut -c4-)
806	err_command[$iec]="$zeile"
807
808	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
809	then
810
811	# ZEILE DEFINIERT INPUT-KOMMANDO
812	(( iic = iic + 1 ))
813	zeile=$(echo $zeile \| cut -c4-)
814	in_command[$iic]="$zeile"
815
816	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
817	then
818
819	# ZEILE DEFINIERT OUTPUT-KOMMANDO
820	(( ioc = ioc + 1 ))
821	zeile=$(echo $zeile \| cut -c4-)
822	out_command[$ioc]="$zeile"
823
824	else
825
826	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
827	# s2a: in/out - Feld
828	# s2b: loc - Feld (optional)
829	# s2c: tr/ar - Feld (optional)
830	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
831	s1=`echo $zeile \| cut -d" " -f1`
832	s2=`echo $zeile \| cut -d" " -s -f2`
833	s2a=$(echo $s2 \| cut -d":" -f1)
834	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
835	then
836	s2b=""
837	s2c=""
838	else
839	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
840	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
841	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
842	fi
843	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
844	s3=`echo $zeile \| cut -d" " -f3`
845	s4=`echo $zeile \| cut -d" " -s -f4`
846	s5=`echo $zeile \| cut -d" " -s -f5`
847	s6=`echo $zeile \| cut -d" " -s -f6`
848
849
850	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
851	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
852	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
853	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
854	# HANDEN SEIN MUSS (D.H. s2b = loc)
855	IFSALT="$IFS"; IFS="$IFS:"
856	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
857	then
858	found=false
859	for actual in $input_list
860	do
861	for formal in $s3
862	do
863	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
864	done
865	done
866	if [[ $found = true ]]
867	then
868	(( iin = iin + 1 ))
869	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
870	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
871	extin[$iin]=$s6
872	fi
873	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
874	then
875	found=false
876	for actual in $output_list
877	do
878	for formal in $s3
879	do
880	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
881	done
882	done
883	if [[ $found = true ]]
884	then
885	(( iout = iout + 1 ))
886	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
887	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
888	fi
889	elif [[ "$s2a" != in && "$s2a" != out ]]
890	then
891	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
892	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
893	locat=connect; exit
894	fi
895	IFS="$IFSALT"
896	fi
897	done < $config_file
898
899	else
900
901
902	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
903	[[ $silent = false ]] && printf "..."
904	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
905	export interpreted_config_file=.icf.$RANDOM
906
907
908
909	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
910	# VERFUEGUNG STELLEN
911	cat > .mrun_environment << %%END%%
912	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
913	config_file = '$config_file', do_remote = '$do_remote',
914	do_trace = '$do_trace', host = '$host',
915	input_list = '$input_list', icf = '$interpreted_config_file',
916	localhost = '$localhost', output_list = '$output_list' /
917
918	%%END%%
919
920	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
921	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
922	mrun_memory=$memory
923	mrun_group_number=$group_number
924	mrun_cpumax=$cpumax
925	mrun_numprocs=$numprocs
926
927	if [[ $localhost_realname = "sx-fep" ]]
928	then
929	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
930	else
931	interpret_config.x
932	fi
933	rm .mrun_environment
934
935
936	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
937	chmod u+x $interpreted_config_file
938	export PATH=$PATH:.
939	. $interpreted_config_file
940	rm $interpreted_config_file
941
942
943	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
944	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
945	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
946	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
947	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
948
949	fi
950
951
952	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
953	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
954	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
955	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
956	if [[ "$SOURCES_COMPLETE" = "" ]]
957	then
958
959	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
960	# VEREINBART WURDE
961	source_path=""
962	line=""
963	grep "%source_path" $config_file > tmp_mrun
964	while read line
965	do
966	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
967	then
968	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
969	then
970	global_source_path=`echo $line \| cut -d" " -f2`
971	fi
972	fi
973	done < tmp_mrun
974
975	line=""
976	found=false
977	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
978	while read line
979	do
980	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
981	then
982	if [[ $found = true ]]
983	then
984	printf "\n\n +++ more than one source path found in configuration file"
985	printf "\n for local host \"$localhost\" "
986	locat=source_path; exit
987	fi
988	source_path=`echo $line \| cut -d" " -f2`
989	found=true
990	fi
991	done < tmp_mrun
992	rm tmp_mrun
993
994	if [[ "$source_path" = "" ]]
995	then
996	if [[ "$global_source_path" != "" ]]
997	then
998	source_path=$global_source_path
999	else
1000	printf "\n\n +++ no source path found in configuration file"
1001	printf "\n for local host \"$localhost\" "
1002	locat=source_path; exit
1003	fi
1004	fi
1005	eval source_path=$source_path
1006
1007	if [[ ! -d $source_path ]]
1008	then
1009	printf "\n\n +++ source path \"$source_path\" on local host"
1010	printf "\n \"$localhost\" does not exist"
1011	locat=source_path; exit
1012	fi
1013
1014	fi
1015
1016
1017	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
1018	# DURCH OPTION -G MITGETEILT)
1019	if [[ "$global_revision" = "" ]]
1020	then
1021	global_revision=`svnversion $source_path 2>/dev/null`
1022	global_revision="Rev: $global_revision"
1023	fi
1024
1025
1026	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
1027	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
1028	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
1029	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
1030	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
1031	if [[ -n $host && "$host" != $localhost ]]
1032	then
1033	do_batch=true
1034	do_remote=true
1035	case $host in
1036	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|lcsgib\|lcsgih\|lctit\|nech\|necriam\|unics\|lcxt4) true;;
1037	(*) printf "\n"
1038	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
1039	printf "\n is not available"
1040	locat=nqs; (( iec = 0 )); exit;;
1041	esac
1042	else
1043	host=$localhost
1044	fi
1045
1046
1047	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
1048	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1049	then
1050
1051	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
1052	if [[ ! -n $numprocs ]]
1053	then
1054	printf "\n"
1055	printf "\n +++ option \"-K parallel\" requires additional specification"
1056	printf "\n of the number of processors to be used by"
1057	printf "\n mrun-option \"-X\" or by environment-variable"
1058	printf "\n \"numprocs\" in the configuration file"
1059	locat=numprocs; (( iec = 0 )); exit
1060	fi
1061
1062	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
1063	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
1064	# GESAMTPROZESSORANZAHL IST
1065	if [[ $host = nech \|\| $host = necriam \|\| $host = ibmh \|\| $host = ibmb \|\| $host = ibms ]]
1066	then
1067	[[ "$tasks_per_node" = "" ]] && tasks_per_node=6
1068	(( ival = $tasks_per_node ))
1069	(( pes = numprocs ))
1070	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1071	# then
1072	# (( pes = pes - 1 ))
1073	# fi
1074	(( ii = pes / ival ))
1075	if (( pes - ii * ival > 0 ))
1076	then
1077	printf "\n"
1078	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1079	printf "\n divisor of the total number of processors (option \"-X\")"
1080	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1081	locat=tasks_per_node; (( iec = 0 )); exit
1082	fi
1083	fi
1084
1085	# IBMY HAT NUR EINEN KNOTEN
1086	if [[ $host = ibmy ]]
1087	then
1088	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1089	then
1090	printf "\n"
1091	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1092	printf "\n total number of processors (option \"-X\")"
1093	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1094	locat=tasks_per_node; (( iec = 0 )); exit
1095	fi
1096	fi
1097
1098	# FALLS OPENMP PARALLELISIERUNG VERWENDET WERDEN SOLL, ANZAHL VON THREADS
1099	# SETZEN UND ZAHL DER TASKS PRO KNOTEN AUF 1 SETZEN
1100	if [[ $use_openmp = true ]]
1101	then
1102	threads_per_task=$tasks_per_node
1103	tasks_per_node=1
1104	fi
1105	OOPT="-O $threads_per_task"
1106	TOPT="-T $tasks_per_node"
1107
1108	# GESAMTZAHL DER KNOTEN BESTIMMEN
1109	if [[ "$tasks_per_node" != "" ]]
1110	then
1111	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1112	fi
1113
1114	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1115	# SETZEN
1116	if [[ $node_usage = default ]]
1117	then
1118	if [[ $host = ibms ]]
1119	then
1120	node_usage=shared
1121	elif [[ $host = lctit ]]
1122	then
1123	node_usage=sla3
1124	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1125	then
1126	node_usage=singlejob
1127	else
1128	node_usage=not_shared
1129	fi
1130	fi
1131
1132	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]]
1133	then
1134	printf "\n"
1135	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1136	printf "\n \"shared\" or \"not_shared\""
1137	locat=tasks_per_node; (( iec = 0 )); exit
1138	fi
1139
1140	fi
1141
1142	# PRUEFEN, OB HOSTFILE EXISTIERT
1143	if [[ -n $hostfile ]]
1144	then
1145	if [[ ! -f $hostfile ]]
1146	then
1147	printf "\n"
1148	printf "\n +++ hostfile \"$hostfile\" does not exist"
1149	locat=hostfile; exit
1150	fi
1151	fi
1152
1153	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1154	if [[ $host = ibmy && $do_remote = false ]]
1155	then
1156	if [[ ! -f $HOME/.rhosts ]]
1157	then
1158	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1159	printf "\n\n *** file:"
1160	printf "\n $HOME/.rhosts"
1161	printf "\n was created\n"
1162	fi
1163	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1164	then
1165	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1166	printf "\n\n *** file:"
1167	printf "\n $HOME/.rhosts"
1168	printf "\n was extended by the name of the current host\n"
1169	fi
1170	fi
1171
1172
1173
1174	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1175	if [[ $queue = none ]]
1176	then
1177	case $host in
1178	(ibmb) if [[ $node_usage = shared ]]
1179	then
1180	queue=cshare
1181	else
1182	queue=csolo
1183	fi;;
1184	(ibmh) if [[ $node_usage = shared ]]
1185	then
1186	queue=cshare
1187	else
1188	queue=csolo
1189	fi;;
1190	(ibmy) queue=parallel;;
1191	(lcsgib) queue=bigq;;
1192	(lcsgih) queue=bigq;;
1193	(lctit) queue=sla3;;
1194	(nech) queue=none;;
1195	(necriam) queue=SS;;
1196	(unics) queue=unics;;
1197	esac
1198	fi
1199
1200
1201	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1202	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1203	# ERMITTELN
1204	(( i = 0 ))
1205	while (( i < iin ))
1206	do
1207	(( i = i + 1 ))
1208	(( maxcycle = 0 ))
1209
1210	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1211	if [[ "${actionin[$i]}" = di ]]
1212	then
1213	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1214	# REM-MASCHINE AUSWERTEN
1215	eval filename=${pathin[$i]}/${endin[$i]}
1216	else
1217	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1218	# REM-MASCHINE AUSWERTEN
1219	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1220	fi
1221
1222	# PRUEFEN AUF VORHANDENSEIN
1223	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1224	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1225	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1226	then
1227	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1228	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1229	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1230	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1231	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1232	if [[ "${transin[$i]}" != "locopt" ]]
1233	then
1234	printf "\n\n +++ INPUT-file: "
1235	if [[ "${extin[$i]}" = "" ]]
1236	then
1237	printf "\n $filename"
1238	else
1239	printf "\n $filename.${extin[$i]}"
1240	fi
1241	printf "\n does not exist\n"
1242	locat=input; exit
1243	else
1244	transin[$i]="unavailable"
1245	fi
1246	else
1247
1248	# ZYKLUSNUMMER FESTSTELLEN
1249	ls -1 -d $filename > filelist 2>/dev/null
1250	ls -1 -d $filename.* >> filelist 2>/dev/null
1251	while read zeile
1252	do
1253	cycle=$(print $zeile \| cut -f2 -d".")
1254	if [[ "$cycle" = "$zeile" ]]
1255	then
1256	(( icycle = 0 ))
1257	elif [[ "$cycle" = "${extin[$i]}" ]]
1258	then
1259	(( icycle = 0 ))
1260	else
1261	(( icycle = $cycle ))
1262	fi
1263	if (( icycle > maxcycle ))
1264	then
1265	(( maxcycle = icycle ))
1266	file_to_be_used=$zeile
1267	fi
1268	done <filelist
1269	rm filelist
1270
1271	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1272	if (( maxcycle > 0 ))
1273	then
1274	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1275	then
1276	filename=${filename}.$maxcycle.${extin[$i]}
1277	else
1278	filename=${filename}.$maxcycle
1279	fi
1280	else
1281	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1282	then
1283	filename=${filename}.${extin[$i]}
1284	fi
1285	fi
1286
1287	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1288	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1289	absnamein[$i]=$filename
1290	if (( maxcycle > 0 ))
1291	then
1292	if [[ "${actionin[$i]}" = di ]]
1293	then
1294	frelin[$i]=${endin[$i]}.$maxcycle
1295	else
1296	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1297	fi
1298	else
1299	if [[ "${actionin[$i]}" = di ]]
1300	then
1301	frelin[$i]=${endin[$i]}
1302	else
1303	frelin[$i]=${afname}${endin[$i]}
1304	fi
1305	fi
1306
1307	fi
1308	done
1309
1310
1311	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1312	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1313	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1314	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1315	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1316	(( i = 0 ))
1317	while (( i < iout ))
1318	do
1319	(( i = i + 1 ))
1320	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1321	then
1322	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = trpe ]]
1323	then
1324	actionout[$i]=""
1325	elif [[ "${actionout[$i]}" = tra ]]
1326	then
1327	actionout[$i]=a
1328	fi
1329	(( maxcycle = 0 ))
1330	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1331	eval catalogname=${pathout[$i]}
1332	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1333	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1334	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1335	then
1336
1337	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1338	if cat /dev/null > $filename
1339	then
1340	rm $filename
1341	else
1342
1343	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1344	if [[ ! -d $catalogname ]]
1345	then
1346	if mkdir -p $catalogname
1347	then
1348	printf "\n\n *** directory:"
1349	printf "\n $catalogname"
1350	printf "\n was created\n"
1351	else
1352	printf "\n\n +++ OUTPUT-file:"
1353	printf "\n $filename"
1354	printf "\n cannot be created, because directory does not exist"
1355	printf "\n and cannot be created either"
1356	printf "\n"
1357	locat=output ; exit
1358	fi 2>/dev/null
1359	else
1360	printf "\n\n +++ OUTPUT-file:"
1361	printf "\n $filename"
1362	printf "\n cannot be created, although directory exists"
1363	printf "\n"
1364	locat=output ; exit
1365	fi
1366	fi 2>/dev/null
1367	else
1368
1369	# ZYKLUSNUMMER FESTSTELLEN
1370	ls -1 -d $filename > filelist 2>/dev/null
1371	ls -1 -d $filename.* >> filelist 2>/dev/null
1372	while read zeile
1373	do
1374	cycle=$(print $zeile \| cut -f2 -d".")
1375	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1376	then
1377	(( icycle = 1 ))
1378	else
1379	(( icycle = $cycle + 1 ))
1380	fi
1381	if (( icycle > maxcycle ))
1382	then
1383	(( maxcycle = icycle ))
1384	fi
1385	done <filelist
1386	rm filelist
1387	fi
1388
1389	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1390	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1391	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1392	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1393	if [[ "${actionout[$i]}" != a ]]
1394	then
1395	if (( maxcycle > 0 ))
1396	then
1397	filename=${filename}.$maxcycle
1398	if cat /dev/null > $filename
1399	then
1400	rm $filename
1401	else
1402	printf "\n +++ OUTPUT-file:"
1403	printf "\n $filename"
1404	printf "\n cannot be created"
1405	locat=output ; exit
1406	fi
1407	fi
1408	else
1409	(( maxcycle = maxcycle - 1 ))
1410	if (( maxcycle > 0 ))
1411	then
1412	filename=${filename}.$maxcycle
1413	fi
1414	fi
1415
1416	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1417	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1418	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1419	pathout[$i]=$filename
1420	if (( maxcycle > 0 ))
1421	then
1422	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1423	else
1424	frelout[$i]=${fname}${endout[$i]}
1425	fi
1426
1427	fi
1428	done
1429
1430
1431	# DAS DVRP-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1432	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1433	then
1434	if [[ "$dvrp_inc" = "" ]]
1435	then
1436	printf "\n\n +++ no value for \"dvrp_inc\" given in configuration file"
1437	printf "\n This is required for the dvrp_graphics package.\n"
1438	locat=dvrp; exit
1439	fi
1440	if [[ "$dvrp_lib" = "" ]]
1441	then
1442	printf "\n\n +++ no value for \"dvrp_lib\" given in configuration file"
1443	printf "\n This is required for the dvrp_graphics package.\n"
1444	locat=dvrp; exit
1445	fi
1446	fi
1447
1448
1449	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1450	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1451	# UEBERSETZT ZU WERDEN)
1452	if [[ "$mainprog" = "" && "$executable" = "" ]]
1453	then
1454	printf "\n +++ neither main program nor executable defined"
1455	locat=source; exit
1456	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1457	then
1458	printf "\n +++ main program as well as executable defined"
1459	locat=source; exit
1460	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1461	then
1462	do_compile=false
1463	fi
1464
1465
1466	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1467	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1468	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1469	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1470	then
1471	rm -rf SOURCES_FOR_RUN_$fname
1472	mkdir SOURCES_FOR_RUN_$fname
1473	fi
1474
1475
1476	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1477	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1478	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1479	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1480	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1481	then
1482
1483	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1484	[[ "$source_list" = WP ]] && source_list=WRITE_PERMIT
1485
1486
1487	# EVTL. ZU UEBERSETZENDE PROGRAMMTEILE DADURCH BESTIMMEN, DASS GEPRUEFT
1488	# WIRD, WELCHE DATEIEN WRITE-PERMIT BESITZEN (DATEIEN SOLLTEN DESHALB
1489	# UNTER RCS-KONTROLLE STEHEN). MIT DER VARIABLEN EXCLUDE KOENNEN
1490	# BESTIMMTE DATEIEN GRUNDSAETZLICH VON DER UEBERSETZUNG AUSGESCHLOSSEN
1491	# WERDEN. DIES IST NUR BEI MANUELLEM START VON MRUN DURCH DEN BENUTZER
1492	# MOEGLICH, DA BEI AUTOMATISCHEN RESTARTS TEST DURCH DIE TATSAECHLICH
1493	# ZU UBERSETZENDEN DATEIEN ERSETZT IST.
1494	# ALLE ERMITTELTEN DATEIEN WERDEN IM VERZEICHNIS SOURCES_FOR_RUN_...
1495	# GESAMMELT
1496	if [[ "$source_list" = WRITE_PERMIT ]]
1497	then
1498
1499	source_list=""
1500	cd $source_path
1501
1502
1503	# ALLE MOEGLICHEN QUELLCODEDATEIEN AUFLISTEN
1504	Names=$(ls -1 *.f90 2>&1)
1505	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && Filenames="$Names"
1506	Names=$(ls -1 *.F90 2>&1)
1507	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && Filenames="$Filenames $Names"
1508	Names=$(ls -1 *.F 2>&1)
1509	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && Filenames="$Filenames $Names"
1510	Names=$(ls -1 *.f 2>&1)
1511	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && Filenames="$Filenames $Names"
1512	Names=$(ls -1 *.c 2>&1)
1513	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && Filenames="$Filenames $Names"
1514
1515
1516	# DATEIEN MIT WRITE-PERMIT NACH SOURCES_FOR_RUN_... KOPIEREN
1517	for dateiname in $Filenames
1518	do
1519	if [[ -w $dateiname ]]
1520	then
1521	if [[ "$exclude" = "" \|\| $(echo $exclude \| grep -c $dateiname) = 0 ]]
1522	then
1523	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1524	source_list=$source_list"$dateiname "
1525	fi
1526	fi
1527	done
1528
1529	cd - > /dev/null
1530
1531
1532	elif [[ "$source_list" = LOCALLY_MODIFIED ]]
1533	then
1534
1535	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1536	source_list=""
1537	cd $source_path
1538
1539
1540	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1541	if [[ ! -d .svn ]]
1542	then
1543	printf "\n\n +++ source directory"
1544	printf "\n \"$source_path\" "
1545	printf "\n is not under control of \"subversion\"."
1546	printf "\n Please do not use mrun-option \"-s LOCALLY MODIFIED\"\n"
1547	fi
1548
1549
1550	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1551	Filenames=""
1552	svn status > tmp_mrun
1553	while read line
1554	do
1555	firstc=`echo $line \| cut -c1`
1556	if [[ $firstc = M \|\| $firstc = "?" ]]
1557	then
1558	Name=`echo "$line" \| cut -c8-`
1559	extension=`echo $Name \| cut -d. -f2`
1560	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1561	then
1562	Filenames="$Filenames "$Name
1563	fi
1564	fi
1565	done < tmp_mrun
1566
1567
1568	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1569	for dateiname in $Filenames
1570	do
1571	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1572	source_list=$source_list"$dateiname "
1573	done
1574
1575	cd - > /dev/null
1576
1577
1578	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1579	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1580	# VORHANDEN
1581	elif [[ "$source_list" != "" && $restart_run != true ]]
1582	then
1583
1584	cd $source_path
1585
1586	for filename in $source_list
1587	do
1588
1589	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1590	if [[ $(print $filename \| grep -c "/") != 0 ]]
1591	then
1592	printf "\n +++ source code file: $filename"
1593	printf "\n must not contain (\"/\") "
1594	locat=source; exit
1595	fi
1596
1597	if [[ ! -f $filename ]]
1598	then
1599	printf "\n +++ source code file: $filename"
1600	printf "\n does not exist"
1601	locat=source; exit
1602	else
1603	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1604	fi
1605
1606	done
1607
1608	cd - > /dev/null
1609
1610	fi
1611
1612
1613	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1614	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1615	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1616	if [[ $restart_run != true ]]
1617	then
1618
1619	if [[ ! -f "$source_path/$mainprog" ]]
1620	then
1621	printf "\n\n +++ main program: $mainprog"
1622	printf "\n does not exist in source directory"
1623	printf "\n \"$source_path\"\n"
1624	locat=source; exit
1625	else
1626	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1627	then
1628	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1629	source_list=${mainprog}" $source_list"
1630	fi
1631	fi
1632	fi
1633
1634
1635	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1636	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1637	if [[ "$restart_run" != true ]]
1638	then
1639	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1640	if [[ ! -f $makefile ]]
1641	then
1642	printf "\n +++ file \"$makefile\" does not exist"
1643	locat=make; exit
1644	else
1645	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1646	fi
1647	fi
1648
1649
1650	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1651	if [[ $restart_run != true && "$add_source_path" != "" ]]
1652	then
1653
1654	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1655	if [[ ! -d $add_source_path ]]
1656	then
1657	printf "\n\n +++ WARNING: additional source code directory"
1658	printf "\n \"$add_source_path\" "
1659	printf "\n does not exist or is not a directory."
1660	printf "\n No source code will be used from this directory!\n"
1661	add_source_path=""
1662	sleep 3
1663	else
1664
1665	cd $add_source_path
1666	found=false
1667
1668	Names=$(ls -1 *.f90 2>&1)
1669	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1670	Names=$(ls -1 *.F90 2>&1)
1671	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1672	Names=$(ls -1 *.F 2>&1)
1673	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1674	Names=$(ls -1 *.f 2>&1)
1675	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1676	Names=$(ls -1 *.c 2>&1)
1677	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1678
1679	cd - > /dev/null
1680	cd SOURCES_FOR_RUN_$fname
1681
1682	# COPY MAKEFILE IF EXISTING
1683	if [[ -f $add_source_path/Makefile ]]
1684	then
1685	printf "\n\n *** user Makefile from directory"
1686	printf "\n \"$add_source_path\" is used \n"
1687	sleep 1
1688	cp $add_source_path/Makefile .
1689	fi
1690
1691	for dateiname in $AddFilenames
1692	do
1693	if [[ -f $dateiname ]]
1694	then
1695	printf "\n +++ source code file \"$dateiname\" found in additional"
1696	printf "\n source code directory \"$add_source_path\" "
1697	printf "\n but was also given with option \"-s\" which means that it should be taken"
1698	printf "\n from directory \"$source_path\"."
1699	locat=source; exit
1700	fi
1701
1702	cp $add_source_path/$dateiname .
1703	source_list="$source_list $dateiname"
1704
1705	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1706	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1707	then
1708	printf "\n\n +++ user file \"$dateiname\" "
1709	printf "\n is not listed in Makefile \n"
1710	locat=source; exit
1711	else
1712
1713	# Default User-Interface von der Liste entfernen, falls Datei
1714	# ein User-Interface enthaelt
1715	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1716	# then
1717	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1718	# then
1719	# rm -rf user_interface.f90
1720	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1721	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1722	# printf "\n since a user-interface is found in file"
1723	# printf "\n \"$add_source_path/$dateiname\" \n"
1724	# sleep 3
1725	# else
1726	if [[ $found = false ]]
1727	then
1728	found=true
1729	printf "\n\n *** following user file(s) added to the"
1730	printf " files to be translated:\n "
1731	fi
1732	printf "$dateiname "
1733	sleep 0.5
1734	fi
1735	done
1736	[[ $found = true ]] && printf "\n"
1737	cd - > /dev/null
1738	fi
1739	fi
1740
1741
1742	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1743	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1744	if [[ $restart_run != true && -n $package_list ]]
1745	then
1746
1747	cd $source_path
1748
1749	for package in $package_list
1750	do
1751
1752	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1753
1754	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1755	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1756	# LIEFERT
1757	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1758
1759
1760	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1761	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1762	for source_list_name in $package_source_list
1763	do
1764	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1765	then
1766
1767	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1768	ending=`echo $source_list_name \| cut -f2 -d.`
1769	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1770	then
1771	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1772	source_list="$source_list $source_list_name"
1773	fi
1774	fi
1775	done
1776	done
1777
1778	cd - > /dev/null
1779	fi
1780
1781
1782	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1783	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1784	# if [[ "$restart_run" != true ]]
1785	# then
1786	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1787	# if [[ ! -f $makefile ]]
1788	# then
1789	# printf "\n +++ file \"$makefile\" does not exist"
1790	# locat=make; exit
1791	# else
1792	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1793	# fi
1794	# fi
1795
1796	fi # do_compile=true
1797
1798
1799	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1800	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1801	if [[ $do_compile = true ]]
1802	then
1803
1804	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1805	# ZUSAMMENSETZEN
1806	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1807	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1808	then
1809	cpp_options="${cpp_options},-D__ibm=__ibm"
1810	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1811	then
1812	cpp_options="$cpp_options -D__nec"
1813	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1814	then
1815	cpp_options="$cpp_options -D__lc"
1816	else
1817	cpp_options="$cpp_options -D__$localhost"
1818	fi
1819
1820	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1821	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1822	then
1823	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1824	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1825	else
1826	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1827	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1828	fi
1829
1830	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1831	if [[ -n $package_list ]]
1832	then
1833	for package in $package_list
1834	do
1835	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1836	then
1837	if [[ $package != "dvrp_graphics+1PE" ]]
1838	then
1839	cpp_options="${cpp_options},-D__$package=__$package"
1840	else
1841	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1842	export use_seperate_pe_for_dvrp_output=true
1843	fi
1844	else
1845	if [[ $package != "dvrp_graphics+1PE" ]]
1846	then
1847	cpp_options="$cpp_options -D__$package"
1848	else
1849	cpp_options="$cpp_options -D__dvrp_graphics"
1850	export use_seperate_pe_for_dvrp_output=true
1851	fi
1852	fi
1853	done
1854	fi
1855
1856	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1857	if [[ -n $cpp_opts ]]
1858	then
1859	for popts in $cpp_opts
1860	do
1861	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1862	then
1863	cpp_options="${cpp_options},-D__$popts=__$popts"
1864	else
1865	cpp_options="$cpp_options -D__$popts"
1866	fi
1867	done
1868	fi
1869
1870	else
1871
1872
1873	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1874	if [[ $do_remote = false ]]
1875	then
1876	if [[ ! -f $executable ]]
1877	then
1878	printf "\n +++ executable file: $executable"
1879	printf "\n does not exist"
1880	locat=executable; exit
1881	fi
1882	fi
1883	fi
1884
1885
1886	# JOBMODUS FESTSTELLEN
1887	if [[ "$ENVIRONMENT" = BATCH && $localhost != lctit \|\| "$QUEUE" != interactive && $localhost = lctit ]]
1888	then
1889	jobmo=BATCH
1890	else
1891	jobmo=INTERACTIVE
1892	fi
1893
1894
1895	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1896	# DURCH BENUTZER ANDERWEITIG VEREINBART
1897	if [[ "$compiler_name" = "" ]]
1898	then
1899
1900	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
1901	locat=compiler_name; exit
1902
1903	fi
1904
1905
1906	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
1907	[[ $localhost = necriam ]] && compiler_name=mpif90
1908
1909
1910
1911	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
1912	kennung=$RANDOM
1913	if [[ "$tmp_user_catalog" = "" ]]
1914	then
1915	if [[ $localhost = ibmb \|\| $localhost = ibmh ]]
1916	then
1917	tmp_user_catalog=$TMPDIR
1918	elif [[ $localhost = nech ]]
1919	then
1920	tmp_user_catalog=$WRKSHR
1921	else
1922	tmp_user_catalog=/tmp
1923	fi
1924	fi
1925	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
1926
1927
1928	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
1929	# BESTIMMEN
1930	if [[ "$tmp_data_catalog" = "" ]]
1931	then
1932	if [[ $localhost = ibmb \|\| $localhost = ibmh ]]
1933	then
1934	tmp_data_catalog=$WORK/mrun_restart_data
1935	elif [[ $localhost = nech ]]
1936	then
1937	tmp_data_catalog=$WRKSHR/mrun_restart_data
1938	else
1939	tmp_data_catalog=/tmp/mrun_restart_data
1940	fi
1941	fi
1942
1943
1944	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
1945	# ERSETZEN
1946	if [[ $do_remote = false && $do_compile = true ]]
1947	then
1948	eval fopts=\"$fopts\"
1949	eval lopts=\"$lopts\"
1950	fi
1951
1952
1953
1954	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
1955	fopts="$fopts $netcdf_inc $dvrp_inc"
1956	lopts="$lopts $netcdf_lib $dvrp_lib"
1957	ROPTS="$ropts"
1958	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxt4 ) && -n $numprocs ]]
1959	then
1960	XOPT="-X $numprocs"
1961	fi
1962
1963
1964
1965	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
1966	# GRAMM BENOETIGT
1967	done=false
1968	while [[ $done = false ]]
1969	do
1970	cputime=$cpumax
1971	if (( $cputime == 0 ))
1972	then
1973	if [[ $do_batch = true ]]
1974	then
1975	printf "\n +++ cpu-time is undefined"
1976	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
1977	printf "\n >>> "
1978	read cputime 1>/dev/null 2>&1
1979	else
1980	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
1981	fi
1982	else
1983	done=true
1984	fi
1985	cpumax=$cputime
1986	done
1987
1988	(( minuten = cputime / 60 ))
1989	(( sekunden = cputime - minuten * 60 ))
1990
1991
1992	# PRUEFEN DER KERNSPEICHERANFORDERUNG
1993	if [[ $do_batch = true ]]
1994	then
1995	done=false
1996	while [[ $done = false ]]
1997	do
1998	if (( memory == 0 ))
1999	then
2000	printf "\n +++ memory demand is undefined"
2001	printf "\n >>> Please type memory in MByte per process as INTEGER:"
2002	printf "\n >>> "
2003	read memory 1>/dev/null 2>&1
2004	else
2005	done=true
2006	fi
2007	done
2008	fi
2009
2010
2011	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
2012	if [[ $do_remote = true && -z $remote_username ]]
2013	then
2014	while [[ -z $remote_username ]]
2015	do
2016	printf "\n +++ username on remote host \"$host\" is undefined"
2017	printf "\n >>> Please type username:"
2018	printf "\n >>> "
2019	read remote_username
2020	done
2021	mc="$mc -u$remote_username"
2022	fi
2023
2024
2025	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
2026	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2027	then
2028	[[ "$mpilib" = "" ]] && export mpilib=mpt
2029	fi
2030
2031
2032
2033	###########################################################################
2034	# HEADER-AUSGABE
2035	###########################################################################
2036
2037
2038	calltime=$(date)
2039	printf "\n"
2040	# [[ $silent = false ]] && clear
2041	printf "#--------------------------------------------------------------# \n"
2042	printf "\| $version$calltime \| \n"
2043	printf "\| \| \n"
2044	spalte1="called on:"; spalte2=$localhost_realname
2045	printf "\| $spalte1$spalte2 \| \n"
2046	if [[ $local_compile = false ]]
2047	then
2048	if [[ $do_remote = true ]]
2049	then
2050	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2051	else
2052	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2053	fi
2054	else
2055	spalte1="compiling test only!"; spalte2=""
2056	fi
2057	printf "\| $spalte1$spalte2 \| \n"
2058	if [[ -n $numprocs ]]
2059	then
2060	spalte1="number of PEs:"; spalte2=$numprocs
2061	printf "\| $spalte1$spalte2 \| \n"
2062	fi
2063	if [[ -n $tasks_per_node ]]
2064	then
2065	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2066	printf "\| $spalte1$spalte2 \| \n"
2067	fi
2068	if [[ $threads_per_task != 1 ]]
2069	then
2070	spalte1="threads per task:"; spalte2="$threads_per_task"
2071	printf "\| $spalte1$spalte2 \| \n"
2072	fi
2073	printf "\| \| \n"
2074	if [[ $do_compile = true ]]
2075	then
2076	spalte1=cpp-directives:; spalte2=$cpp_options
2077	printf "\| $spalte1$spalte2 \| \n"
2078	zeile=$(echo "$cpp_options" \| cut -c41-)
2079	while [[ "$zeile" != "" ]]
2080	do
2081	spalte1=""
2082	spalte2=$zeile
2083	printf "\| $spalte1$spalte2 \| \n"
2084	zeile=$(echo "$zeile" \| cut -c41-)
2085	done
2086
2087	spalte1=compiler-options:; spalte2="$fopts"
2088	printf "\| $spalte1$spalte2 \| \n"
2089	zeile=$(echo "$fopts" \| cut -c41-)
2090	while [[ "$zeile" != "" ]]
2091	do
2092	spalte1=""
2093	spalte2=$zeile
2094	printf "\| $spalte1$spalte2 \| \n"
2095	zeile=$(echo "$zeile" \| cut -c41-)
2096	done
2097
2098	spalte1=linker-options:; spalte2=$lopts
2099	printf "\| $spalte1$spalte2 \| \n"
2100	zeile=$(echo "$lopts" \| cut -c41-)
2101	while [[ "$zeile" != "" ]]
2102	do
2103	spalte1=""
2104	spalte2=$zeile
2105	printf "\| $spalte1$spalte2 \| \n"
2106	zeile=$(echo "$zeile" \| cut -c41-)
2107	done
2108
2109	spalte1="main program":; spalte2=$mainprog
2110	printf "\| $spalte1$spalte2 \| \n"
2111	else
2112	spalte1=executable:; spalte2=$executable
2113	printf "\| $spalte1$spalte2 \| \n"
2114	fi
2115	printf "\| \| \n"
2116	spalte1="base name of files":; spalte2=$fname
2117	printf "\| $spalte1$spalte2 \| \n"
2118	if [[ $fname != $afname ]]
2119	then
2120	spalte1="base name of input files":; spalte2=$afname
2121	printf "\| $spalte1$spalte2 \| \n"
2122	fi
2123	spalte1="INPUT control list":; spalte2=$input_list
2124	printf "\| $spalte1$spalte2 \| \n"
2125	spalte1="OUTPUT control list":; spalte2=$output_list
2126	printf "\| $spalte1$spalte2 \| \n"
2127
2128	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2129	then
2130	spalte1="memory demand / PE":; spalte2="$memory MB"
2131	printf "\| $spalte1$spalte2 \| \n"
2132	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2133	printf "\| $spalte1$spalte2 \| \n"
2134	fi
2135
2136	if [[ $do_compile = true ]]
2137	then
2138	printf "\| \| \n"
2139	printf "\| Files to be compiled: \| \n"
2140	zeile=$source_list
2141	while [[ "$zeile" != "" ]]
2142	do
2143	spalte3=$zeile
2144	printf "\| $spalte3 \| \n"
2145	zeile=$(echo "$zeile" \| cut -c61-)
2146	done
2147	fi
2148	printf "#--------------------------------------------------------------#"
2149
2150
2151
2152	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2153	if [[ $do_trace = true ]]
2154	then
2155	(( i = 0 ))
2156	while (( i < iin ))
2157	do
2158	(( i = i + 1 ))
2159	if (( i == 1 ))
2160	then
2161	printf "\n\n >>> INPUT-file assignments:\n"
2162	fi
2163	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2164	done
2165	(( i = 0 ))
2166	while (( i < iout ))
2167	do
2168	(( i = i + 1 ))
2169	if (( i == 1 ))
2170	then
2171	printf "\n\n >>> OUTPUT-file assignments:\n"
2172	fi
2173	printf "\n ${localout[$i]} : ${pathout[$i]}"
2174	done
2175	(( i = 0 ))
2176	while (( i < iic ))
2177	do
2178	(( i = i + 1 ))
2179	if (( i == 1 ))
2180	then
2181	printf "\n\n >>> INPUT-commands:\n"
2182	fi
2183	printf "\n ${in_command[$i]}"
2184	done
2185	(( i = 0 ))
2186	while (( i < ioc ))
2187	do
2188	(( i = i + 1 ))
2189	if (( i == 1 ))
2190	then
2191	printf "\n\n >>> OUTPUT-commands:\n"
2192	fi
2193	printf "\n ${out_command[$i]}"
2194	done
2195	fi
2196
2197
2198	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2199	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2200	then
2201	antwort=dummy
2202	printf "\n\n"
2203	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2204	do
2205	printf " >>> everything o.k. (y/n) ? "
2206	read antwort
2207	done
2208	if [[ $antwort = n \|\| $antwort = N ]]
2209	then
2210	locat=user_abort; (( iec = 0 )); exit
2211	fi
2212	if [[ $do_batch = true ]]
2213	then
2214	printf " >>> batch-job will be created and submitted"
2215	else
2216	if [[ $local_compile = false ]]
2217	then
2218	printf " >>> MRUN will now continue to execute on this machine"
2219	else
2220	printf " >>> a test compilation will now be carried out on this machine"
2221	fi
2222	fi
2223	fi
2224
2225
2226
2227
2228	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2229	# CHENDE AKTIONEN DURCHGEFUEHRT
2230	if [[ $do_batch = false ]]
2231	then
2232
2233
2234	# TEMPORAEREN KATALOG ERZEUGEN
2235	mkdir -p $TEMPDIR
2236	chmod go+rx $TEMPDIR
2237	tmpcreate=true
2238
2239
2240	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2241	# TEMPORAERES VERZEICHNIS KOPIEREN
2242	if [[ $do_compile = true ]]
2243	then
2244
2245	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2246	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2247	if [[ $localhost = nech ]]
2248	then
2249	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2250	if mkdir -p $TEMPDIR_COMPILE
2251	then
2252	printf "\n *** \"$TEMPDIR_COMPILE\" "
2253	printf "\n is generated as temporary directory for cross compiling\n"
2254	else
2255	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2256	printf "\n needed for cross compilation failed"
2257	locat=compile
2258	exit
2259	fi
2260	else
2261	TEMPDIR_COMPILE=$TEMPDIR
2262	fi
2263
2264
2265	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2266	line=""
2267	grep "%depository_path" $config_file > tmp_mrun
2268	while read line
2269	do
2270	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2271	then
2272	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2273	then
2274	global_depository_path=`echo $line \| cut -d" " -s -f2`
2275	fi
2276	fi
2277	done < tmp_mrun
2278
2279	line=""
2280	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2281	while read line
2282	do
2283	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2284	then
2285	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2286	then
2287	local_depository_path=`echo $line \| cut -d" " -s -f2`
2288	fi
2289	fi
2290	done < tmp_mrun
2291
2292	if [[ "$local_depository_path" = "" ]]
2293	then
2294	if [[ "$global_depository_path" != "" ]]
2295	then
2296	local_depository_path=$global_depository_path
2297	else
2298	printf "\n\n +++ no depository path found in configuration file"
2299	printf "\n for local host \"$localhost\" "
2300	printf "\n please set \"\%depository_path\" in configuration file\n"
2301	locat=config_file; exit
2302	fi
2303	fi
2304	eval local_depository_path=$local_depository_path
2305	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2306	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2307
2308
2309	basename=`print $mainprog \| cut -f1 -d"."`
2310	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2311	if [[ ! -f $make_depository ]]
2312	then
2313	printf "\n"
2314	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2315	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2316	else
2317	cp $make_depository $TEMPDIR_COMPILE
2318	cd $TEMPDIR_COMPILE
2319	tar -xf $make_depository > /dev/null 2>&1
2320	cd - > /dev/null
2321	fi
2322
2323	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2324
2325	# FALLS USER-INTERFACE VORHANDEN UND AUF DATEI MIT ANDEREM NAMEN
2326	# ALS user_interface.f90 LIEGT, DIESEN GEAENDERTEN NAMEN INS
2327	# MAKEFILE EINTRAGEN
2328	# cd $TEMPDIR_COMPILE
2329	# interface_file=`grep -l "END SUBROUTINE user_parin" $source_list`
2330	# if [[ "$interface_file" != "" ]]
2331	# then
2332	# interface_file=`echo $interface_file \| cut -d"." -f1`
2333	# mv Makefile Makefile_old
2334	# sed "s/user_interface/$interface_file/g" Makefile_old > Makefile
2335	# fi
2336	# cd - > /dev/null
2337	else
2338	cp $executable ${TEMPDIR}/a.out
2339	fi
2340
2341
2342	# WECHSEL IN TEMPORAEREN KATALOG
2343	cd $TEMPDIR
2344	printf "\n *** changed to temporary directory: $TEMPDIR"
2345
2346
2347	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2348	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2349	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2350	# ERMITTELN
2351	(( i = 0 ))
2352	while (( i < iout ))
2353	do
2354	(( i = i + 1 ))
2355	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2356	then
2357	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2358	else
2359	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2360	fi
2361	done
2362
2363
2364	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2365	if [[ $do_compile = true ]]
2366	then
2367
2368
2369	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2370	printf "\n\n\n *** compilation starts \n$striche\n"
2371	printf " *** compilation with make using following options:\n"
2372	printf " make depository: $make_depository"
2373	printf " compilername: $compiler_name\n"
2374	printf " options: $fopts\n"
2375	printf " preprocessor-directives: $cpp_options \n"
2376	printf " linker-options: $lopts \n"
2377	printf " source code files: $source_list \n"
2378
2379	if [[ $localhost = nech ]]
2380	then
2381	ssh 136.172.44.192 -l $usern ". /SX/opt/etc/initsx.sh; cd \$HOME/work/${usern}.$kennung; sxmake -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2382	cp $TEMPDIR_COMPILE/a.out .
2383	[[ $? != 0 ]] && compile_error=true
2384	rm -rf $TEMPDIR_COMPILE
2385	elif [[ $localhost = lcsgib ]]
2386	then
2387	printf " compiler is called via ssh on \"bicegate\" using module \"$mpilib\" \n"
2388	ssh 130.73.232.102 -l $usern ". /usr/share/modules/init/bash; module load $mpilib; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2389	[[ ! -f a.out ]] && compile_error=true
2390	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2391	elif [[ $localhost = lcsgih ]]
2392	then
2393	printf " compiler is called via ssh on \"hicegate2\" using module \"$mpilib\" \n"
2394	ssh 130.75.4.103 -l $usern ". /usr/share/modules/init/bash; module load $mpilib; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2395	[[ ! -f a.out ]] && compile_error=true
2396	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2397	else
2398	[[ $localhost = lctit ]] && export LM_LICENSE_FILE=27050@tggls
2399	make -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2400	fi
2401
2402	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2403	then
2404	printf "\n +++ error occured while compiling or linking"
2405	locat=compile
2406
2407	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
2408	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
2409	# then
2410	exit
2411	# else
2412	# locat=normal
2413	# fi
2414	else
2415	printf "$striche\n *** compilation finished \n"
2416	fi
2417	fi
2418
2419
2420	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2421	if [[ $local_compile = true ]]
2422	then
2423	cd $HOME
2424	rm -rf $TEMPDIR
2425	locat=local_compile; exit
2426	fi
2427
2428
2429	# BEREITSTELLEN DER INPUT-DATEIEN
2430	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2431	(( i = 0 ))
2432	while (( i < iin ))
2433	do
2434	(( i = i + 1 ))
2435	if (( i == 1 ))
2436	then
2437	printf "\n\n *** providing INPUT-files:\n$striche"
2438	fi
2439
2440
2441	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2442	if [[ "${transin[$i]}" = unavailable ]]
2443	then
2444	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2445	then
2446	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2447	printf "\n is not available!"
2448	else
2449	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2450	printf "\n is not available!"
2451	fi
2452	continue
2453	fi
2454
2455	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2456	files_for_pes=false; datentyp=file
2457	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2458	then
2459	files_for_pes=true; datentyp=directory
2460	actionin[$i]=""
2461	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2462	then
2463	actionin[$i]=""
2464	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2465	then
2466	files_for_pes=true; datentyp=directory
2467	actionin[$i]="ar"
2468	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2469	then
2470	actionin[$i]="ar"
2471	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2472	then
2473	files_for_pes=true; datentyp=directory
2474	actionin[$i]="fl"
2475	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2476	then
2477	actionin[$i]="fl"
2478	fi
2479
2480	if [[ $files_for_pes = true ]]
2481	then
2482	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
2483	else
2484	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
2485	fi
2486
2487	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
2488	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
2489	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
2490	# SERVER ZU HOLEN
2491	if [[ "${actionin[$i]}" = fl ]]
2492	then
2493	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
2494	if [[ $files_for_pes = false ]]
2495	then
2496	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
2497	then
2498	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
2499	got_tmp[$i]=true
2500	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2501	then
2502	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2503	printf "\n *** trying to use backup copy in \"$WORK\" "
2504	cp $WORK/${frelin[$i]} ${localin[$i]}
2505	else
2506	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2507	printf "\n or \"$tmp_data_catalog\" does not exist!"
2508	printf "\n *** trying to get copy from archive"
2509	actionin[$i]=ar
2510	fi
2511	else
2512	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
2513	then
2514	mkdir ${localin[$i]}
2515	cd $tmp_data_catalog/${frelin[$i]}
2516	for file in $(ls *)
2517	do
2518	ln $file $TEMPDIR/${localin[$i]}
2519	done
2520	cd $TEMPDIR
2521	got_tmp[$i]=true
2522	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2523	then
2524	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2525	printf "\n *** trying to use backup copy in \"$WORK\" "
2526	cp -r $WORK/${frelin[$i]} ${localin[$i]}
2527	else
2528	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2529	printf "\n or \"$tmp_data_catalog\" does not exist!"
2530	printf "\n *** trying to get copy from archive"
2531	actionin[$i]=ar
2532	fi
2533	fi
2534	fi
2535
2536
2537	# DATEI LIEGT AUF ARCHIV-SERVER
2538	if [[ "${actionin[$i]}" = ar ]]
2539	then
2540
2541	if [[ $files_for_pes = false ]]
2542	then
2543	printf "\n file will be restored from archive-system ($archive_system)!"
2544	else
2545	printf "\n directory will be restored from archive-system ($archive_system)!"
2546	fi
2547
2548	file_restored=false
2549
2550	if [[ $archive_system = asterix ]]
2551	then
2552	do_stagein=true
2553	(( stagein_anz = 0 ))
2554	while [[ $do_stagein = true ]]
2555	do
2556	if [[ $files_for_pes = false ]]
2557	then
2558	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
2559	else
2560	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
2561	fi
2562	cat STAGEIN_OUTPUT
2563	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
2564	then
2565	file_restored=true
2566	do_stagein=false
2567	else
2568	(( stagein_anz = stagein_anz + 1 ))
2569	if (( stagein_anz == 10 ))
2570	then
2571	printf "\n +++ stagein stoped after 10 tries"
2572	locat=stage
2573	exit
2574	fi
2575	printf "\n +++ restoring from archive failed, trying again:"
2576	sleep 900
2577	fi
2578	done
2579	elif [[ $archive_system = DMF ]]
2580	then
2581	if [[ $files_for_pes = false ]]
2582	then
2583	printf "\n +++ restoring of single files impossible with $archive_system !\n"
2584	locat=DMF
2585	exit
2586	else
2587	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
2588	cp -r $ARCHIVE/${frelin[$i]} $PWD
2589	file_restored=true
2590	fi
2591	elif [[ $archive_system = tivoli ]]
2592	then
2593	if [[ $files_for_pes = false ]]
2594	then
2595	if [[ $localhost = ibmh ]]
2596	then
2597	ssh $usern@hdata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2598	else
2599	ssh $usern@bdata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2600	fi
2601	else
2602	(( inode = 0 ))
2603	while (( inode < nodes ))
2604	do
2605	if [[ $localhost = ibmh ]]
2606	then
2607	ssh $usern@hdata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2608	else
2609	ssh $usern@bdata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2610	fi
2611	(( inode = inode + 1 ))
2612	done
2613	fi
2614	file_restored=true
2615	elif [[ $archive_system = ut ]]
2616	then
2617	if [[ $files_for_pes = false ]]
2618	then
2619	cp $UT/${frelin[$i]} .
2620	else
2621	(( inode = 0 ))
2622	while (( inode < nodes ))
2623	do
2624	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
2625	(( inode = inode + 1 ))
2626	done
2627	fi
2628	file_restored=true
2629	else
2630	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
2631	locat=rearchive
2632	exit
2633	fi
2634
2635	if [[ $file_restored = true ]]
2636	then
2637
2638	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
2639	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
2640	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
2641	if [[ $files_for_pes = false ]]
2642	then
2643	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
2644	else
2645	mkdir $tmp_data_catalog/${frelin[$i]}
2646	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
2647	fi
2648	got_tmp[$i]=true
2649
2650	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
2651	mv ${frelin[$i]} ${localin[$i]}
2652
2653	fi
2654	fi
2655
2656
2657	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
2658	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
2659	then
2660
2661	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
2662	then
2663
2664	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
2665	printf "\n file will be provided for $numprocs processors"
2666	mkdir ${localin[$i]}
2667	ival=$numprocs
2668	(( ii = 0 ))
2669	while (( ii <= ival-1 ))
2670	do
2671	if (( ii < 10 ))
2672	then
2673	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
2674	elif (( ii < 100 ))
2675	then
2676	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
2677	elif (( ii < 1000 ))
2678	then
2679	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
2680	else
2681	cp ${absnamein[$i]} ${localin[$i]}/_$ii
2682	fi
2683	(( ii = ii + 1 ))
2684	done
2685
2686	else
2687
2688	if [[ $files_for_pes = true ]]
2689	then
2690
2691	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
2692	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
2693	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
2694	# PER MOVE UMBENANNT WERDEN
2695	printf "\n providing $numprocs files for the respective processors"
2696	mkdir ${localin[$i]}
2697	if [[ $link_local_input = true ]]
2698	then
2699	printf " using ln -f\n"
2700	cd ${absnamein[$i]}
2701	for file in $(ls *)
2702	do
2703	ln -f $file ${localin[$i]}
2704	done
2705	cd $TEMPDIR
2706	fi
2707	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
2708	if [[ ! -f "${localin[$i]}/_0000" ]]
2709	then
2710	if [[ $link_local_input = true ]]
2711	then
2712	printf " ln failed for .../_0000, using cp...\n"
2713	fi
2714	cp -r ${absnamein[$i]}/* ${localin[$i]}
2715	fi
2716
2717	else
2718	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
2719	if [[ $link_local_input = true ]]
2720	then
2721	printf " using ln -f\n"
2722	ln -f ${absnamein[$i]} ${localin[$i]}
2723	fi
2724	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
2725	if [[ ! -f "${localin[$i]}" ]]
2726	then
2727	if [[ $link_local_input = true ]]
2728	then
2729	printf " ln failed, using cp...\n"
2730	fi
2731	cp ${absnamein[$i]} ${localin[$i]}
2732	fi
2733	fi
2734	fi
2735	fi
2736
2737	done
2738	if (( i != 0 ))
2739	then
2740	printf "\n$striche\n *** all INPUT-files provided \n"
2741	fi
2742
2743
2744	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
2745	# LESEN VON PALM)
2746	cat > ENVPAR << %%END%%
2747	&envpar run_identifier = '$fname', host = '$localhost',
2748	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2749	maximum_cpu_time_allowed = ${cpumax}.,
2750	revision = '$global_revision' /
2751
2752	%%END%%
2753
2754
2755	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
2756	(( i = 0 ))
2757	while (( i < iic ))
2758	do
2759	(( i = i + 1 ))
2760	if (( i == 1 ))
2761	then
2762	printf "\n\n *** execution of INPUT-commands:\n$striche"
2763	fi
2764	printf "\n >>> ${in_command[$i]}"
2765	eval ${in_command[$i]}
2766	if (( i == iic ))
2767	then
2768	printf "\n$striche\n"
2769	fi
2770	done
2771
2772
2773	# VERBLEIBENDE CPU-ZEIT BERECHNEN
2774	cpurest=${cpumax}.
2775
2776
2777	# PROGRAMMSTART
2778	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
2779	PATH=$PATH:$TEMPDIR
2780
2781	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
2782	then
2783	if [[ "$ENVIRONMENT" = BATCH ]]
2784	then
2785	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
2786	then
2787	printf "\n +++ debug is allowed in interactive mode only"
2788	locat=debug
2789	exit
2790	fi
2791	fi
2792	if [[ $localhost = decalpha ]]
2793	then
2794	dxladebug a.out
2795	elif [[ $localhost = ibmb \|\| $localhost = ibmh ]]
2796	then
2797
2798	# SETUP THE IBM MPI ENVIRONMENT
2799	export MP_SHARED_MEMORY=yes
2800	export AIXTHREADS_SCOPE=S
2801	export OMP_NUM_THREADS=$threads_per_task
2802	export AUTHSTATE=files
2803	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
2804
2805	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
2806	export MP_ADAPTER_USE=shared
2807	export MP_CPU_USE=multiple
2808	export MP_TIMEOUT=1200
2809
2810	unset MP_TASK_AFFINITY
2811
2812	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
2813	#(( ii = 1 ))
2814	#while (( ii <= $numprocs ))
2815	#do
2816	# echo $localhost_realname >> hostfile
2817	# (( ii = ii + 1 ))
2818	#done
2819	#export MP_HOSTFILE=hostfile
2820
2821	if [[ "$LOADLBATCH" = yes ]]
2822	then
2823	totalview poe a.out $ROPTS
2824	else
2825	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
2826	export TVDSVRLAUNCHCMD=ssh
2827	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
2828	fi
2829	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
2830	then
2831	# CURRENTLY NO DEBUGGER ON LCSGI
2832	if [[ $run_coupled_model = true ]]
2833	then
2834	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
2835	locat=debug
2836	exit
2837	else
2838	echo "no_coupling" > runfile_atmos
2839	fi
2840	(( ii = $numprocs / $threads_per_task ))
2841	export OMP_NUM_THREADS=$threads_per_task
2842	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
2843	if [[ $threads_per_task != 1 ]]
2844	then
2845	printf "\n threads per task: $threads_per_task"
2846	fi
2847	printf "\n\n"
2848	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
2849	then
2850	# export MPI_LAUNCH_TIMEOUT=360
2851	if [[ "$totalview" = true ]]
2852	then
2853	printf "\n running totalview debugger"
2854	mpiexec_mpt -tv -n $ii ./a.out $ROPTS < runfile_atmos
2855	else
2856	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
2857	fi
2858	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
2859	then
2860	# ulimit -s 300000 # A too large stack size causes problems
2861	# export MV2_NUM_PORTS=2
2862	# export MV2_CPU_MAPPING=0:1:2:3
2863	mpiexec ./a.out $ROPTS < runfile_atmos
2864	fi
2865	else
2866	printf "\n +++ no debug available on \"$localhost\" "
2867	printf "\n or not implemented in mrun so far"
2868	locat=debug
2869	exit
2870	fi
2871	else
2872	if [[ -n $numprocs ]]
2873	then
2874
2875	# RUNNING THE PROGRAM ON PARALLEL MACHINES
2876	if [[ $(echo $host \| cut -c1-3) = ibm ]]
2877	then
2878	# SETUP THE IBM MPI ENVIRONMENT
2879	export MP_SHARED_MEMORY=yes
2880	export AIXTHREAD_SCOPE=S
2881	export OMP_NUM_THREADS=$threads_per_task
2882	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
2883	export AUTHSTATE=files
2884	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
2885	# export MP_PRINTENV=yes
2886
2887	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
2888	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
2889	export MP_WAIT_MODE=poll
2890	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
2891	# export MP_EAGER_LIMIT=65535
2892
2893	# # TESTWEISE FUER TURBOMPI (JAN 05)
2894	# export MPJ_MTAB=128
2895	# export MPJ_ALLTOALL=1
2896	# export MPJ_ALLTOALLV=1
2897
2898	if [[ "$LOADLBATCH" = yes ]]
2899	then
2900	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
2901	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
2902	then
2903	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
2904	else
2905	poe ./a.out $ROPTS
2906	fi
2907	else
2908	if [[ $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms ]]
2909	then
2910	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
2911	elif [[ $localhost = ibmy ]]
2912	then
2913	if [[ -f $hostfile ]]
2914	then
2915	cp $hostfile hostfile
2916	else
2917	(( ii = 1 ))
2918	while (( ii <= $numprocs ))
2919	do
2920	echo $localhost_realname >> hostfile
2921	(( ii = ii + 1 ))
2922	done
2923	fi
2924	export MP_HOSTFILE=hostfile
2925	./a.out -procs $tasks_per_node $ROPTS
2926	else
2927	if [[ "$host_file" = "" ]]
2928	then
2929	printf "\n +++ no hostfile given in configuration file"
2930	locat=config_file
2931	exit
2932	else
2933	eval host_file=$host_file
2934	fi
2935	export MP_HOSTFILE=$host_file
2936	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
2937	fi
2938	fi
2939	elif [[ $host = nech \|\| $host = necriam ]]
2940	then
2941	(( ii = nodes ))
2942	if [[ $ii = 1 ]]
2943	then
2944	export F_ERRCNT=0 # acceptable number of errors before program is stopped
2945	export MPIPROGINF=YES
2946	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
2947	echo "*** execution on single node with mpirun"
2948	mpirun -np $numprocs ./a.out $ROPTS
2949	else
2950	(( i = 0 ))
2951	while (( i < ii ))
2952	do
2953	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
2954	(( i = i + 1 ))
2955	done
2956
2957	echo "#!/bin/sh" > mpi_exec_shell
2958	echo " " >> mpi_exec_shell
2959	echo "set -u" >> mpi_exec_shell
2960	echo "F_ERRCNT=0" >> mpi_exec_shell
2961	echo "MPIPROGINV=YES" >> mpi_exec_shell
2962	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
2963	echo "cpurest=$cpurest" >> mpi_exec_shell
2964	echo "fname=$fname" >> mpi_exec_shell
2965	echo "localhost=$localhost" >> mpi_exec_shell
2966	echo "return_addres=$return_addres" >> mpi_exec_shell
2967	echo "return_username=$return_username" >> mpi_exec_shell
2968	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
2969	echo "write_binary=$write_binary" >> mpi_exec_shell
2970	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
2971	echo " " >> mpi_exec_shell
2972	echo "export F_ERRCNT" >> mpi_exec_shell
2973	echo "export MPIPROGINV" >> mpi_exec_shell
2974	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
2975	echo "export cpurest" >> mpi_exec_shell
2976	echo "export fname" >> mpi_exec_shell
2977	echo "export localhost" >> mpi_exec_shell
2978	echo "export return_addres" >> mpi_exec_shell
2979	echo "export return_username" >> mpi_exec_shell
2980	echo "export tasks_per_node" >> mpi_exec_shell
2981	echo "export write_binary" >> mpi_exec_shell
2982	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
2983	echo " " >> mpi_exec_shell
2984	echo "exec ./a.out" >> mpi_exec_shell
2985
2986	chmod u+x mpi_exec_shell
2987	export MPIPROGINF=YES
2988	mpirun -f multinode_config &
2989	wait
2990
2991	fi
2992	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lctit ]]
2993	then
2994
2995	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
2996	# DOES NOT EXIST
2997	if [[ $host != lcsgih && $host != lcsgib ]]
2998	then
2999	if [[ -f $hostfile ]]
3000	then
3001	cp $hostfile hostfile
3002	else
3003	(( ii = 1 ))
3004	while (( ii <= $numprocs / $threads_per_task ))
3005	do
3006	echo $localhost_realname >> hostfile
3007	(( ii = ii + 1 ))
3008	done
3009	fi
3010	eval zeile=\"`head -n $ii hostfile`\"
3011	printf "\n *** running on: $zeile"
3012	fi
3013
3014	(( ii = $numprocs / $threads_per_task ))
3015	export OMP_NUM_THREADS=$threads_per_task
3016	# echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3017	if [[ $threads_per_task != 1 ]]
3018	then
3019	printf "\n threads per task: $threads_per_task"
3020	fi
3021	if [[ $run_coupled_model = false ]]
3022	then
3023	echo "no_coupling" > runfile_atmos
3024	printf "\n\n"
3025	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3026	then
3027	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3028	then
3029	# export MPI_LAUNCH_TIMEOUT=360
3030	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3031	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3032	then
3033	# ulimit -s 300000 # A too large stack size causes problems
3034	# export MV2_NUM_PORTS=2
3035	# export MV2_CPU_MAPPING=0:1:2:3
3036	mpiexec ./a.out $ROPTS < runfile_atmos
3037	fi
3038	elif [[ $host = lcxt4 ]]
3039	then
3040	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3041	else
3042	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3043	fi
3044	else
3045
3046	# currently there is no full MPI-2 support on ICE and XT4
3047	(( iia = $numprocs_atmos / $threads_per_task ))
3048	(( iio = $numprocs_ocean / $threads_per_task ))
3049	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3050	printf "\n using $coupled_mode coupling"
3051	printf "\n\n"
3052
3053	if [[ $coupled_mode = "mpi2" ]]
3054	then
3055	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3056	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3057	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3058	then
3059
3060	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3061	then
3062	# export MPI_LAUNCH_TIMEOUT=360
3063	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3064	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3065	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3066	then
3067	# ulimit -s 300000 # A too large stack size causes problems
3068	# export MV2_NUM_PORTS=2
3069	# export MV2_CPU_MAPPING=0:1:2:3
3070	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3071	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3072	fi
3073
3074	elif [[ $host = lcxt4 ]]
3075	then
3076
3077	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3078	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3079
3080	else
3081	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3082	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3083	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3084	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3085	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3086	fi
3087	wait
3088
3089	else
3090
3091	echo "coupled_run $iia $iio" > runfile_atmos
3092	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3093	then
3094
3095	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3096	then
3097	# export MPI_LAUNCH_TIMEOUT=360
3098	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3099	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3100	then
3101	# ulimit -s 300000 # A too large stack size causes problems
3102	# export MV2_NUM_PORTS=2
3103	# export MV2_CPU_MAPPING=0:1:2:3
3104	mpiexec ./a.out $ROPTS < runfile_atmos
3105	fi
3106
3107	elif [[ $host = lcxt4 ]]
3108	then
3109
3110	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3111
3112	fi
3113	wait
3114	fi
3115
3116	# if [[ $scirocco = true ]]
3117	# then
3118	# mpiexec -machinefile hostfile -n $ii a.out $ROPTS
3119	# else
3120	# mpirun -machinefile hostfile -np $ii a.out $ROPTS
3121	# fi
3122	fi
3123	elif [[ $host = decalpha ]]
3124	then
3125	dmpirun -np $numprocs a.out $ROPTS
3126	elif [[ $host = lctit ]]
3127	then
3128	export runfile=runfile.$kennung
3129
3130	echo "cd $PWD" > $runfile
3131	echo "export OMP_NUM_THREADS=$OMP_NUM_THREADS" >> $runfile
3132	echo "export cpurest=$cpurest" >> $runfile
3133	echo "export fname=$fname" >> $runfile
3134	echo "export localhost=$localhost" >> $runfile
3135	echo "export return_addres=$return_addres" >> $runfile
3136	echo "export return_username=$return_username" >> $runfile
3137	echo "export tasks_per_node=$tasks_per_node" >> $runfile
3138	echo "export write_binary=$write_binary" >> $runfile
3139	echo "export use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> $runfile
3140	echo "./a.out" >> $runfile
3141	chmod u+x $runfile
3142
3143	if [[ "$QUEUE" = interactive ]]
3144	then
3145	mpirun -np $numprocs a.out $ROPTS
3146	else
3147	(( mem_tsubame = $memory / 1024.0 ))
3148	echo "Memory for Tsubame for each process in GB:", $mem_tsubame
3149	# n1ge -fore -g 1S060156 -mpi $numprocs -mem 4 -N palm -q $queue a.out $ROPTS
3150	/n1ge/TITECH_GRID/tools/bin/n1ge -fore -g $group_number -mpi ${numprocs}:$tasks_per_node -mem $mem_tsubame -N palm -rt $minuten -q $queue a.out $ROPTS
3151	fi
3152
3153	rm $runfile
3154	else
3155	mpprun -n $numprocs a.out $ROPTS
3156	fi
3157	[[ $? != 0 ]] && execution_error=true
3158
3159
3160	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3161	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3162	then
3163	apprentice
3164	fi
3165	else
3166	a.out $ROPTS
3167	fi
3168	fi
3169	if [[ $? != 0 \|\| $execution_error = true ]]
3170	then
3171
3172	# ABBRUCH BEI LAUFZEITFEHLER
3173	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3174	printf "\n +++ runtime error occured"
3175	locat=execution
3176	exit
3177	else
3178	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3179	printf "\n$striche\n *** execution finished \n"
3180	fi
3181
3182
3183
3184	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3185	(( i = 0 ))
3186	while (( i < ioc ))
3187	do
3188	(( i = i + 1 ))
3189	if (( i == 1 ))
3190	then
3191	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
3192	fi
3193	printf "\n >>> ${out_command[$i]}"
3194	eval ${out_command[$i]}
3195	if (( i == ioc ))
3196	then
3197	printf "\n$striche\n"
3198	fi
3199	done
3200
3201
3202	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
3203	if [[ $do_trace = true ]]
3204	then
3205	printf "\n\n"
3206	ls -al
3207	fi
3208
3209
3210
3211	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
3212	(( i = 0 ))
3213	while (( i < iout ))
3214	do
3215	(( i = i + 1 ))
3216	if (( i == 1 ))
3217	then
3218	printf "\n\n *** saving OUTPUT-files:\n$striche"
3219	fi
3220
3221	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3222	files_for_pes=false; filetyp=file
3223	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
3224	then
3225	files_for_pes=true; filetyp=directory
3226	actionout[$i]=""
3227	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
3228	then
3229	actionout[$i]=""
3230	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
3231	then
3232	files_for_pes=true; filetyp=directory
3233	actionout[$i]="ar"
3234	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
3235	then
3236	actionout[$i]="ar"
3237	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
3238	then
3239	files_for_pes=true; filetyp=directory
3240	actionout[$i]="fl"
3241	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
3242	then
3243	actionout[$i]="fl"
3244	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
3245	then
3246	files_for_pes=true; filetyp=directory
3247	actionout[$i]="tr"
3248	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
3249	then
3250	actionout[$i]="tr"
3251	fi
3252
3253	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
3254	then
3255	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
3256	elif [[ ! -f ${localout[$i]}/_0000 && $files_for_pes = true ]]
3257	then
3258	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
3259	else
3260
3261
3262	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3263	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3264	# REMOTE-RECHNUNGEN
3265	if [[ "${actionout[$i]}" = tr ]]
3266	then
3267	if [[ $localhost != $fromhost ]]
3268	then
3269	if [[ $files_for_pes = false ]]
3270	then
3271	cps=""
3272	cst=""
3273	else
3274	cps=-c
3275	cst="/"
3276	fi
3277	if [[ $localhost = ibmh \|\| $localhost = ibmb \|\| $localhost = nech ]]
3278	then
3279
3280	# TRANSFER IN EIGENSTAENDIGEM JOB
3281	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3282	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3283	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3284	if [[ $files_for_pes = false ]]
3285	then
3286	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3287	else
3288	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
3289	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
3290	fi
3291
3292	echo "set -x" > transfer_${localout[$i]}
3293	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3294
3295	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
3296	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
3297	printf "\n or higher cycle\n"
3298	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3299
3300	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3301
3302	if [[ $localhost = nech ]]
3303	then
3304	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3305	else
3306	if [[ "$LOGNAME" = b323013 ]]
3307	then
3308	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3309	else
3310	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3311	fi
3312	fi
3313
3314	else
3315
3316	# TRANSFER INNERHALB DIESES JOBS
3317	transfer_failed=false
3318	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
3319	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
3320	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3321	[[ $? != 0 ]] && transfer_failed=true
3322
3323	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3324	# LOKALER MASCHINE ANLEGEN
3325	if [[ $transfer_failed = true ]]
3326	then
3327	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3328	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3329
3330	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3331	# ANLEGEN.
3332	eval local_catalog=${pathout[$i]}
3333	if [[ ! -d $local_catalog ]]
3334	then
3335	printf " *** local directory does not exist. Trying to create:\n"
3336	printf " $local_catalog \n"
3337	mkdir -p $local_catalog
3338	fi
3339	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3340	transfer_problems=true
3341	fi
3342	fi
3343	else
3344
3345	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
3346	actionout[$i]=""
3347	fi
3348	fi
3349
3350
3351	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3352	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3353	# REMOTE-RECHNUNGEN
3354	if [[ "${actionout[$i]}" = tra ]]
3355	then
3356	if [[ $localhost != $fromhost ]]
3357	then
3358	if [[ $localhost = ibmh \|\| $localhost = ibmb \|\| $localhost = nech ]]
3359	then
3360
3361	# TRANSFER IN EIGENSTAENDIGEM JOB
3362	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3363	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3364	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3365	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3366
3367	echo "set -x" > transfer_${localout[$i]}
3368	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3369
3370	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
3371	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
3372	printf "\n or higher cycle\n"
3373	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3374
3375	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3376
3377	if [[ $localhost = nech ]]
3378	then
3379	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3380	else
3381	if [[ $LOGNAME = b323013 ]]
3382	then
3383	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3384	else
3385	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3386	fi
3387	fi
3388
3389	else
3390
3391	# TRANSFER INNERHALB DIESES JOBS
3392	transfer_failed=false
3393	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
3394	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
3395	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3396	[[ $? != 0 ]] && transfer_failed=true
3397
3398	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3399	# LOKALER MASCHINE ANLEGEN
3400	if [[ $transfer_failed = true ]]
3401	then
3402	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3403	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3404
3405	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3406	# ANLEGEN
3407	eval local_catalog=${pathout[$i]}
3408	if [[ ! -d $local_catalog ]]
3409	then
3410	printf " *** local directory does not exist. Trying to create:\n"
3411	printf " $local_catalog \n"
3412	mkdir -p $local_catalog
3413	fi
3414
3415	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3416	transfer_problems=true
3417	fi
3418	fi
3419	else
3420
3421	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
3422	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
3423	actionout[$i]=a
3424	fi
3425	fi
3426
3427
3428	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
3429	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
3430	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
3431	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
3432	if [[ "${actionout[$i]}" = fl ]]
3433	then
3434	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3435	chmod g+rx $tmp_data_catalog
3436	if [[ $files_for_pes = false ]]
3437	then
3438	printf "\n >>> OUTPUT: ${localout[$i]} to"
3439	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3440	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
3441	else
3442	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
3443	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3444	mkdir $tmp_data_catalog/${frelout[$i]}
3445	cd ${localout[$i]}
3446	for file in $(ls *)
3447	do
3448	ln -f $file $tmp_data_catalog/${frelout[$i]}
3449	done
3450	cd $TEMPDIR
3451	fi
3452
3453
3454	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
3455	if [[ $store_on_archive_system = true ]]
3456	then
3457
3458	if [[ $archive_system = asterix ]]
3459	then
3460	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3461	if [[ $files_for_pes = false ]]
3462	then
3463	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3464	else
3465	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3466	fi
3467	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3468	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
3469	echo "then" >> archive_${frelout[$i]}
3470	echo " do_stageout=false" >> archive_${frelout[$i]}
3471	echo "else" >> archive_${frelout[$i]}
3472	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
3473	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
3474	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
3475	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
3476	if [[ $files_for_pes = false ]]
3477	then
3478	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
3479	else
3480	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
3481	fi
3482	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
3483	echo "fi" >> archive_${frelout[$i]}
3484	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3485	elif [[ $archive_system = DMF ]]
3486	then
3487	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3488	if [[ $files_for_pes = false ]]
3489	then
3490	printf "\n +++ archiving of single files impossible with $archive_system !\n"
3491	locat=DMF
3492	exit
3493	else
3494	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
3495	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
3496	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
3497	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
3498	fi
3499	elif [[ $archive_system = tivoli ]]
3500	then
3501	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3502	if [[ $files_for_pes = false ]]
3503	then
3504	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3505	echo "set -x" >> archive_${frelout[$i]}
3506	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3507	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3508	else
3509
3510	echo "set -x" >> archive_${frelout[$i]}
3511	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
3512	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3513	cd $tmp_data_catalog
3514	all_files=`ls -1 ${frelout[$i]}/*`
3515	cd - > /dev/null
3516	(( inode = 0 ))
3517	(( tp1 = tasks_per_node + 1 ))
3518	while (( inode < nodes ))
3519	do
3520	# echo "*** all_files = \"$all_files\" "
3521	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3522	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3523	# echo "*** tasks_per_node = \"$tasks_per_node\" "
3524	# echo "*** files = \"$files\" "
3525	# echo "*** all_files = \"$all_files\" "
3526	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3527	echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3528	echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3529	(( inode = inode + 1 ))
3530	done
3531	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3532	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3533	fi
3534	elif [[ $archive_system = ut ]]
3535	then
3536	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3537	if [[ $files_for_pes = false ]]
3538	then
3539	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3540	echo "set -x" >> archive_${frelout[$i]}
3541	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3542	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3543	else
3544
3545	echo "set -x" >> archive_${frelout[$i]}
3546	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
3547	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
3548	cd $tmp_data_catalog
3549	all_files=`ls -1 ${frelout[$i]}/*`
3550	cd - > /dev/null
3551	(( inode = 0 ))
3552	(( tp1 = tasks_per_node + 1 ))
3553	while (( inode < nodes ))
3554	do
3555	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3556	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3557	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3558	(( inode = inode + 1 ))
3559	done
3560	fi
3561	elif [[ $archive_system = none ]]
3562	then
3563	printf " +++ archiving on $localhost not available!\n"
3564	fi
3565
3566	if [[ $archive_system != none ]]
3567	then
3568	if [[ $localhost = ibmh \|\| $localhost = ibmb ]]
3569	then
3570	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
3571	subjob -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
3572	elif [[ $localhost = nech ]]
3573	then
3574	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
3575	fi
3576	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3577	fi
3578	else
3579	printf " +++ caution: option -A is switched on. No archiving on $archive_system!\n"
3580	fi
3581
3582
3583	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
3584	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
3585	if [[ $files_for_pes = false ]]
3586	then
3587	cat /dev/null > ${pathout[$i]}
3588	else
3589	mkdir -p ${pathout[$i]}
3590	fi
3591
3592	fi
3593
3594
3595	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
3596	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
3597	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
3598	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
3599	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
3600	# GEMAESSEN ARCHIVIERUNGEN GESETZT
3601	if [[ "${actionout[$i]}" = ar ]]
3602	then
3603	if [[ $files_for_pes = false ]]
3604	then
3605	printf "\n >>> OUTPUT: ${localout[$i]} to"
3606	printf "\n ${pathout[$i]}"
3607	printf "\n File will be copied to archive-system ($archive_system) !\n"
3608	else
3609	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
3610	printf "\n ${pathout[$i]}"
3611	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
3612	fi
3613	mv ${localout[$i]} ${frelout[$i]}
3614
3615	file_saved=false
3616
3617	if [[ $archive_system = asterix ]]
3618	then
3619	do_stageout=true
3620	(( stageout_anz = 0 ))
3621	while [[ $do_stageout = true ]]
3622	do
3623	if [[ $files_for_pes = false ]]
3624	then
3625	stageout ${frelout[$i]} > STAGE_OUTPUT
3626	else
3627	stageout -t ${frelout[$i]} > STAGE_OUTPUT
3628	fi
3629	cat STAGE_OUTPUT
3630	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
3631	then
3632	file_saved=true
3633	do_stageout=false
3634	else
3635	if [[ $files_for_pes = false ]]
3636	then
3637	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
3638	else
3639	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
3640	fi
3641	(( stageout_anz = stageout_anz + 1 ))
3642	if (( stageout_anz == 10 ))
3643	then
3644	printf "\n +++ stoped after 10 unsuccessful tries!"
3645	archive_save=false
3646	do_stageout=false
3647	else
3648	printf "\n *** new try to store on archive after 15 min:"
3649	sleep 900
3650	fi
3651	fi
3652	done
3653	elif [[ $archive_system = DMF ]]
3654	then
3655	if [[ $files_for_pes = false ]]
3656	then
3657	printf "\n +++ archiving of single files impossible on $archive_system!\n"
3658	locat=DMF
3659	exit
3660	else
3661	rm -rf $ARCHIVE/${frelout[$i]}
3662	cp -r ${frelout[$i]} $ARCHIVE
3663	fi
3664	file_saved=true
3665	elif [[ $archive_system = tivoli ]]
3666	then
3667	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
3668	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
3669	# GELEGT WERDEN
3670	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3671	chmod g+rx $tmp_data_catalog
3672	if [[ $files_for_pes = false ]]
3673	then
3674	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
3675	else
3676	mkdir $tmp_data_catalog/${frelout[$i]}
3677	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
3678	fi
3679
3680	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
3681	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
3682	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
3683	if [[ $files_for_pes = false ]]
3684	then
3685	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3686	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3687	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3688	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3689	else
3690	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3691	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3692	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3693	fi
3694
3695	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
3696	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3697	file_saved=true
3698
3699	elif [[ $archive_system = ut ]]
3700	then
3701	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
3702	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
3703	# GELEGT WERDEN
3704	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3705	chmod g+rx $tmp_data_catalog
3706	if [[ $files_for_pes = false ]]
3707	then
3708	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
3709	else
3710	mkdir $tmp_data_catalog/${frelout[$i]}
3711	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
3712	fi
3713
3714	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
3715	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
3716	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
3717	if [[ $files_for_pes = false ]]
3718	then
3719	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3720	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3721	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3722	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3723	else
3724	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3725	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3726	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3727	fi
3728
3729	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
3730	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3731	file_saved=true
3732
3733	else
3734	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
3735	archive_save=false
3736	fi
3737	if [[ $file_saved = true ]]
3738	then
3739	if [[ $files_for_pes = false ]]
3740	then
3741	cat /dev/null > ${pathout[$i]}
3742	else
3743	mkdir -p ${pathout[$i]}
3744	fi
3745	fi
3746	fi
3747
3748	# APPEND AUF LOKALER MASCHINE
3749	if [[ "${actionout[$i]}" = "a" ]]
3750	then
3751	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
3752	cat ${localout[$i]} >> ${pathout[$i]}
3753	fi
3754
3755	# KOPIEREN AUF LOKALER MASCHINE
3756	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
3757	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
3758	then
3759
3760	# KOPIEREN AUF EINPROZESSORMASCHINE
3761	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
3762	then
3763	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
3764	if [[ $link_local_output = true ]]
3765	then
3766	printf " using ln -f\n"
3767	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
3768	fi
3769	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
3770	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
3771	then
3772	if [[ $link_local_output = true ]]
3773	then
3774	printf " ln failed, using cp...\n"
3775	fi
3776	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
3777	fi
3778	else
3779	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
3780	if [[ $link_local_output = true ]]
3781	then
3782	printf " using ln -f\n"
3783	ln -f ${localout[$i]} ${pathout[$i]}
3784	fi
3785	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
3786	if [[ ! -f "${pathout[$i]}" ]]
3787	then
3788	if [[ $link_local_output = true ]]
3789	then
3790	printf " ln failed, using cp...\n"
3791	fi
3792	cp ${localout[$i]} ${pathout[$i]}
3793	fi
3794	fi
3795
3796	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
3797	then
3798
3799	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
3800	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
3801	# WIRD DANN KOPIERT
3802	# PER MOVE UMBENANNT WERDEN
3803	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
3804	if [[ $link_local_output = true ]]
3805	then
3806	printf " using ln -f\n"
3807	mkdir ${pathout[$i]}
3808	cd ${localout[$i]}
3809	for file in $(ls *)
3810	do
3811	ln -f $file ${pathout[$i]}
3812	done
3813	cd $TEMPDIR
3814	fi
3815	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
3816	if [[ ! -f "${pathout[$i]}/_0000" ]]
3817	then
3818	if [[ $link_local_output = true ]]
3819	then
3820	printf " ln failed for .../_0000, using cp...\n"
3821	fi
3822	cp -r ${localout[$i]} ${pathout[$i]}
3823	fi
3824
3825	fi
3826	fi
3827	done
3828	if (( i != 0 ))
3829	then
3830	if [[ $transfer_problems = true ]]
3831	then
3832	printf "\n$striche\n *** OUTPUT-files saved"
3833	printf "\n +++ WARNING: some data transfers failed! \n"
3834	else
3835	printf "\n$striche\n *** all OUTPUT-files saved \n"
3836	fi
3837	fi
3838
3839
3840	# EVENTUELL FOLGEJOB STARTEN
3841	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
3842	if [[ -f CONTINUE_RUN ]]
3843	then
3844
3845	if [[ $archive_save = true ]]
3846	then
3847
3848	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
3849	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
3850	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
3851	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
3852	# HANDEN
3853	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
3854	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
3855	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
3856	if [[ $(echo $mc \| grep -c "#") != 0 ]]
3857	then
3858	mc=`echo $mc \| sed 's/#/f/g'`
3859	fi
3860
3861
3862	# JOB STARTEN
3863	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
3864	echo " $mc"
3865	printf "\n$striche\n"
3866	if [[ $localhost != $fromhost ]]
3867	then
3868
3869	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms \|\| $localhost = lctit ]]
3870	then
3871	echo "*** ssh will be used to initiate restart-runs!"
3872	echo " return_addres=\"$return_addres\" "
3873	echo " return_username=\"$return_username\" "
3874	if [[ $return_addres = 172.20.25.41 ]]
3875	then
3876	# WORKAROUND AUF SCIROCCO AM TIT
3877	print "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc " \| ssh $return_addres -l $return_username
3878	else
3879	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
3880	fi
3881	else
3882	printf "\n +++ no restart mechanism available for host \"$localhost\" "
3883	locat=restart; exit
3884	fi
3885
3886	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
3887	# DER AKTUELLE JOB ENDET
3888	sleep 30
3889
3890	else
3891
3892	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
3893	# RUFEN WERDEN, AUSSER AUF lcfimm
3894	cd $LOCAL_PWD
3895	if [[ $localhost = lcfimm ]]
3896	then
3897	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
3898	else
3899	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
3900	fi
3901	cd - > /dev/null
3902	fi
3903	printf "\n$striche\n *** restart-run initiated \n"
3904
3905
3906	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
3907	# GEHOLT WORDEN SIND, LOESCHEN
3908	(( i = 0 ))
3909	while (( i < iin ))
3910	do
3911	(( i = i + 1 ))
3912	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
3913	then
3914	rm -r $tmp_data_catalog/${frelin[$i]}
3915	fi
3916	done
3917
3918	else
3919
3920	printf "\n +++ no restart-run possible, since errors occured"
3921	printf "\n during the archive process"
3922	fi
3923
3924	fi
3925
3926
3927
3928	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
3929	if [[ "$email_notification" != "" ]]
3930	then
3931
3932	if [[ $localhost != $fromhost ]]
3933	then
3934	if [[ -f CONTINUE_RUN ]]
3935	then
3936	echo "PALM restart run necessary" > email_text
3937	echo "description header of actual run:" >> email_text
3938	cat CONTINUE_RUN >> email_text
3939	echo "mrun-command to restart:" >> email_text
3940	echo "$mc" >> email_text
3941	else
3942	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
3943	fi
3944	mail $email_notification < email_text
3945	printf "\n *** email notification sent to \"$email_notification\" "
3946	fi
3947	fi
3948
3949
3950
3951	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
3952	cd $HOME
3953	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
3954
3955	else
3956
3957
3958	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
3959	# CHENDE AKTIONEN DURCHGEFUEHRT
3960
3961	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
3962	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
3963	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
3964	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
3965	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
3966	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
3967	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
3968	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
3969	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
3970	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
3971	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
3972	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
3973	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
3974	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
3975	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
3976	if [[ $use_openmp = true ]]
3977	then
3978	mrun_com=${mrun_com}" -O"
3979	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $threads_per_task"
3980	else
3981	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
3982	fi
3983	[[ $store_on_archive_system = false ]] && mrun_com=${mrun_com}" -A"
3984	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
3985	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
3986	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
3987	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
3988	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
3989	if [[ $do_remote = true ]]
3990	then
3991	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
3992	fi
3993
3994
3995	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
3996	jobfile=jobfile.$RANDOM
3997
3998
3999	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4000	echo "mkdir $TEMPDIR" >> $jobfile
4001	echo "cd $TEMPDIR" >> $jobfile
4002
4003
4004	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4005	if [[ $do_trace = true ]]
4006	then
4007	echo "set -x" >> $jobfile
4008	else
4009	echo "set +vx" >> $jobfile
4010	fi
4011
4012
4013	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4014	# DATEI FUER DEN JOB
4015	if [[ $( echo $host \| cut -c1-5 ) = lcsgi ]]
4016	then
4017
4018	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4019	# KOPIEREN
4020	if [[ $restart_run != true ]]
4021	then
4022	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4023	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4024	fi
4025
4026	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4027	echo "set -x" >> $jobfile
4028	echo "scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4029	echo "export SOURCES_COMPLETE=true" >> $jobfile
4030
4031	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4032	# ARBEITSVERZEICHNIS VERSCHIEBEN
4033	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4034	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4035	echo "execute_mrun=true" >> $jobfile
4036	echo " " >> $jobfile
4037
4038	else
4039
4040	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4041	# SOWIE GEGEBENENFALLS DES MAKEFILES
4042	if [[ $do_compile = true ]]
4043	then
4044
4045	source_catalog=SOURCES_FOR_RUN_$fname
4046
4047	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4048	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4049	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4050	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4051	echo "export SOURCES_COMPLETE=true" >> $jobfile
4052	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4053
4054	for filename in $source_list
4055	do
4056	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4057	echo "cat > $filename << \"%END%\"" >> $jobfile
4058	cat $source_catalog/$filename >> $jobfile
4059	echo " " >> $jobfile
4060	echo "%END%" >> $jobfile
4061	echo " " >> $jobfile
4062	done
4063
4064	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4065	echo "cat > Makefile << \"%END%\"" >> $jobfile
4066	cat $source_catalog/Makefile >> $jobfile
4067	echo " " >> $jobfile
4068	echo "%END%" >> $jobfile
4069	echo " " >> $jobfile
4070
4071	echo "cd - > /dev/null" >> $jobfile
4072
4073	fi
4074
4075
4076	# ABSPEICHERN DER KONFIGURATIONSDATEI
4077	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4078	echo "cat > $config_file << \"%END%\"" >> $jobfile
4079	cat $config_file >> $jobfile
4080	echo "%END%" >> $jobfile
4081	echo " " >> $jobfile
4082
4083
4084	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
4085	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4086	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
4087	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
4088	echo "%END%" >> $jobfile
4089	if [[ $host = lctit ]]
4090	then
4091	echo "sed 's/bin\/ksh/home2\/usr5\/mkanda\/pub\/ksh/' < $mrun_script_name > mrun_new" >> $jobfile
4092	echo "mv mrun_new $mrun_script_name" >> $jobfile
4093	fi
4094	echo "chmod u+x $mrun_script_name" >> $jobfile
4095	echo "execute_mrun=true" >> $jobfile
4096	echo " " >> $jobfile
4097
4098	fi
4099
4100
4101	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
4102	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
4103	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
4104	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
4105	if [[ $do_remote = true ]]
4106	then
4107	(( i = 0 ))
4108	while (( i < iin ))
4109	do
4110	(( i = i + 1 ))
4111	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
4112	if [[ "${transin[$i]}" = job ]]
4113	then
4114	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
4115	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
4116	echo " " >> $jobfile
4117	echo "%END%" >> $jobfile
4118	else
4119	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
4120	fi
4121
4122	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
4123	echo "if [[ \$? = 1 ]]" >> $jobfile
4124	echo "then" >> $jobfile
4125	echo " echo \" \" " >> $jobfile
4126	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
4127	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
4128	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
4129	echo " execute_mrun=false" >> $jobfile
4130	echo "fi" >> $jobfile
4131	done
4132	fi
4133
4134	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
4135	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
4136	echo "LOCAL_PWD=$working_directory" >> $jobfile
4137	echo "export LOCAL_PWD" >> $jobfile
4138
4139	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
4140	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
4141	echo "export LOCAL_MRUN_PATH" >> $jobfile
4142
4143	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
4144	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
4145	then
4146	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
4147	fi
4148
4149	# MRUN AUF ZIELRECHNER AUFRUFEN
4150	echo "set -x" >> $jobfile
4151	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
4152
4153	echo 'ls -al; echo `pwd`' >> $jobfile
4154	echo "cd \$HOME" >> $jobfile
4155	echo "rm -rf $TEMPDIR" >> $jobfile
4156
4157
4158
4159
4160	# JOB PER SUBJOB STARTEN
4161	if [[ $silent = false ]]
4162	then
4163	printf "\n "
4164	else
4165	printf "\n\n"
4166	fi
4167
4168	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog $jobfile
4169	rm -rf $jobfile
4170
4171
4172	fi # ENDE REMOTE-TEIL
4173
4174
4175
4176	# ENDE DER PROZEDUR

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