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source: palm/trunk/SCRIPTS/mrun @ 190

Last change on this file since 190 was 188, checked in by letzel, 16 years ago
bugfix: typo removed in lcxt4 branch (mrun)
Property svn:keywords set to `Id`
File size: 145.6 KB

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1	#!/bin/ksh
2	# mrun - Plot-Shellskript
3	# $Id: mrun 188 2008-08-08 21:09:21Z letzel $
4
5	# Prozedur zum Starten von Modellaeufen
6
7	# letzte Aenderung:
8	# 03/03/94 - Siggi - Entwicklungsbeginn
9	# 21/03/94 - Siggi - Entwicklungsabschluss (Version 1.0)
10	# 09/12/94 - Siggi - allexport unterbunden; statt dessen werden jetzt ein-
11	# zelne Variable exportiert. Dies ist noetig, weil an-
12	# sonsten irgendein Speicher ueberlaeuft und von mrun
13	# aufgerufene Programme (z.B. stageout) mit Fehlern
14	# abbrechen (too many arguments)
15	# 20/06/95 - Siggi - noclobber muss explizit abgeschaltet, da jetzt
16	# defaultmaessig im RRZN-Profile eingeschaltet
17	# 10/06/97 - Siggi - Zusaetzliche Option -C bei cpp, damit // nicht
18	# wegfallen
19	# 25/04/00 - Siggi - Version 1.5
20	# remote_addres und remote_user in return_addres bzw.
21	# return_username umbenannt, return_username wird dem
22	# mrun-Aufruf im Job ueber Option -U mitgegeben.
23	# Neue Variable remote_username, die beim interaktiven
24	# mrun-Aufruf zwingend ueber die neue Option -u oder
25	# in der Konfigurationsdatei angegeben werden muss.
26	# 08/02/01 - Siggi - Alle mrun-Meldungen ins englische uebersetzt,
27	# Version 1.7
28	# 05/05/02 - Siggi - Uebersetzungen mittels make-Mechanismus moeglich
29	# 21/11/02 - Siggi - ENV-Variable XLFRTEOPTS wird vor Ausfuehrung auf
30	# IBM gesetzt, um Record-Laenge der NAMELIST-Dateien,
31	# zu bestimmen; Praeprozessoroptionen haben nun alle
32	# die Form -Dtext=text, weil auf IBM sonst text durch
33	# die leere Zeichenkette ersetzt wird
34	# 01/08/03 - Siggi - Test of implementing dvrp+1PE on ibm
35	# 07/01/04 - Siggi - additional preprocessor directive for ibm included
36	# (-D$OMP=OMP) in order to avoid problems with
37	# OMP_NUM_THREADS
38	# 04/01/05 - Siggi - archiving on hanni and berni is done in separate
39	# tar files, one for each node used
40	# 07/01/04 - Siggi - old code for t3e, vpp and hpcs eliminated
41	# 09/01/05 - Siggi - workaround for getting the IP address on gfdl3
42	# 17/01/05 - Siggi - job for data transfer to local machine now within
43	# job class c1 (HLRN)
44	# 27/01/05 - Siggi - IP address workaround for gfdl3 removed
45	# 28/01/05 - Siggi - tar-filenames on $PERM (HLRN) now include the
46	# base filename and cycle number
47	# 16/02/05 - Gerald - hababai validated
48	# 14/03/05 - Siggi - abort on NEC after first runtime error (F_ERRCNT)
49	# 29/03/05 - Marcus - berni*-en0 validated
50	# 21/04/05 - Siggi - transfer-job-protocol for avs-data is no more stored
51	# 24/04/05 - Siggi - netcdf support on lcmuk
52	# 25/04/05 - Siggi - netcdf support on gfld3 (decalpha)
53	# 11/05/05 - Siggi - files with non-numeric extensions (.xxx after cycle
54	# number) can now be used within interactive runs
55	# 12/05/05 - Siggi - netcdf support on ibm
56	# 13/05/05 - Siggi - error in tar-filenames on $PERM (HLRN) removed
57	# 18/05/05 - Siggi - netcdf support on nec
58	# 24/05/05 - Siggi - netcdf support on ibms
59	# 14/06/05 - Siggi - sleep interval after submit of restart job increased
60	# to 30 seconds
61	# 28/06/05 - Siggi - bora adjusted to new intel compiler (LD_LIBRARY_
62	# PATH is temporarily set)
63	# 07/09/05 - Siggi - setting of MP_EAGER_LIMIT switched off because it
64	# caused warnings in the job protocol
65	# 20/10/05 - Siggi - update of netcdf-version on decalpha (gfdl3)
66	# 25/10/05 - Siggi - error in listing files for getting the cycle number
67	# removed
68	# 26/10/05 - Siggi - new paths for dvrp-library, transfer of catalogs
69	# realized by file attribute trpe
70	# 28/10/05 - Siggi - if existing, the file extension is output in case
71	# of missing input file - no job abort in case of
72	# missing input files with file extensions
73	# (preliminary solution)
74	# 31/10/05 - Siggi - data transfer from nech now within seperate job
75	# 04/11/05 - Siggi - netcdf 3.6.0-p1 on ibmh/ibmb
76	# 07/12/05 - Siggi - gallego and elephanta admitted
77	# 30/12/05 - Siggi - gfdl5 (ibmy) admitted
78	# 10/01/06 - Siggi - cpp directive for NetCDF 64bit support
79	# 20/01/06 - Siggi - cpp directive for ibmy
80	# 09/02/06 - Siggi - ibmy admitted for batch mode
81	# 13/04/06 - Siggi - ostria admitted
82	# 18/04/06 - Siggi - usage of OpenMP implemented (additional option -O)
83	# 10/05/06 - Siggi - environment variable XLSMPOPTS set on IBM for
84	# optimization of OpenMP runs (option stacksize is
85	# necessary for large gridpoint numbers because
86	# otherwise a segmentation fault occurs)
87	# 23/05/05 - Siggi - lctit (SUN Fire X4600) admitted
88	# 21/08/06 - Siggi - standard mrun path on scirocco is as on bora
89	# 23/08/06 - Siggi - netcdf support for scirocco (notebook)
90	# 20/09/06 - Marcus - add DVRP library on nech
91	# 24/10/06 - Siggi - Environment variables for PALM steering are written
92	# on local NAMELIST file ENVPAR
93	# 24/11/06 - Siggi - levanto admitted, maestro switched to ifc 9.1
94	# 28/11/06 - Siggi - call to interpret_config.x_levanto because of SuSe 10
95	# 06/02/07 - Siggi - add DVRP library on lcmuk
96	# 07/02/07 - Siggi - revision of source code handling, source code is
97	# now expected in directory given by source_path and
98	# not in the current working directory, source code
99	# files provided in add_source_path are allways
100	# compiled, source code to be compiled is allways
101	# sampled in SOURCES_FOR_RUN_$fname which is a
102	# subdirectory of the current working directory,
103	# -s TEST changed to -s WRITE_PERMIT or -s WP,
104	# adapted for RIAM (neck)
105	# bugfix for cycle number of output file (extout)
106	# all hpmuk-related code removed
107	# 14/02/07 - Siggi - dvrp support for neck added
108	# 28/02/07 - Siggi - empty lines in configuration file are accepted
109	# mrun_path replaced by PALM_BIN,
110	# all machines are calling interpret_config.x
111	# 14/03/07 - Siggi - fimm admitted, revision number added to terminal
112	# output
113	# 16/03/07 - Siggi - adjustments for lctit
114	# 29/03/07 - Siggi - global revision transfered to batch job by new
115	# option -G
116	# 30/03/07 - Siggi - compilation "by hand" removed, cpp-directives/options
117	# + netcdf/dvrp-options are read from configuration
118	# file, host identifier (local_host) is read from
119	# config file, code related to ftp filetransfer
120	# removed (incl. option -f)
121	# 19/06/07 - Siggi - time limit for cdata jobs increased
122	# 25/07/07 - Siggi - two sets of executables can be started on lcmuk,
123	# if new option -Y (coupling) is given,
124	# output of executables to aout_output removed,
125	# messages are immediately written to stdout instead
126	# 03/08/07 - Marcus - add XOPT="-X $numprocs" for lcfimm
127	# 09/08/07 - Marcus - workaround on lcfimm to propagate environment
128	# variables out to the nodes in coupled mode -disabled-
129	# 13/08/07 - Marcus - start local restart jobs per ssh on lcfimm
130	# 28/08/07 - Marcus - completely remove workaround on lcfimm to propagate
131	# environment variables out to the nodes in coupled mode
132	# 15/10/07 - Siggi - Preliminary adjustments for lctit, based on Jin's
133	# suggestions
134	# 19/10/07 - Marcus - further adjustments for lctit: add new optional
135	# argument -g group_number, admit all sla* node_usage
136	# queues
137	# 30/10/07 - Marcus - further adjustments for queues on lctit
138	# 14/02/08 - Bjoern - link of restart files with long file name possible
139	# 28/02/08 - Marcus - If environment variable link_local_output is set to
140	# true, mrun tries "ln -f" on local output and resorts
141	# to "cp" or "cp -r" on error
142	# 15/04/08 - Siggi - argument -c introduced to most of the subjob calls,
143	# which allows the user to choose his own job catalog
144	# by setting job_catalog in the configuration file
145	# (default is ~/job_queue),
146	# workaround for mpiexec with -env option,
147	# adjustments for lcxt4 (Bergen Center for Computational
148	# Science)
149	# 22/05/08 - Marcus - If environment variable link_local_input is set to
150	# true, mrun tries "ln -f" on local input and resorts
151	# to "cp" or "cp -r" on error
152	# 27/05/08 - Siggi - PATH is set to PALM_BIN everywhere (missing so far)
153	# 14/07/08 - Siggi - adjustments for lcsgih
154	# 08/08/08 - Marcus - typo removed in lcxt4 branch
155
156	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
157
158	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
159	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
160	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
161
162	AddFilenames=""
163	additional_conditions=""
164	add_source_path=""
165	afname=""
166	archive_save=true
167	archive_system=none
168	compiler_name=""
169	cond1=""
170	cond2=""
171	config_file=.mrun.config
172	cpp_opts=""
173	cpp_options=""
174	cpumax=0
175	cpurest=0
176	delete_temporary_catalog=true
177	do_batch=false
178	do_compile=true
179	do_remote=false
180	do_stagein=true
181	do_stageout=true
182	do_trace=false
183	email_notification=""
184	exclude=""
185	executable=""
186	execution_error=false
187	fimm=false
188	fname=test
189	fromhost=""
190	global_revision=""
191	group_number=none
192	host=""
193	host_file=""
194	hp=""
195	ignore_archive_error=false
196	input_list=""
197	interpreted_config_file=""
198	job_catalog="~/job_queue"
199	job_on_file=""
200	keep_data_from_previous_run=false
201	link_local_input=false
202	link_local_output=false
203	localhost_realname=$(hostname)
204	local_compile=false
205	locat=normal
206	mainprog=""
207	makefile=""
208	mc=$0
209	while [[ $(echo $mc \| grep -c "/") != 0 ]]
210	do
211	mc=`echo $mc \| cut -f2- -d"/"`
212	done
213	module_files=""
214	mrun_script_name=$mc
215	netcdf_inc=""
216	netcdf_lib=""
217	netcdf_support=false
218	node_usage=default
219	numprocs=""
220	OOPT=""
221	openmp=false
222	output_list=""
223	package_list=""
224	punkte="..........................................................."
225	queue=none
226	read_from_config=""
227	restart_run=false
228	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
229	if [[ $return_addres = 130.75.105.158 ]]
230	then
231	return_addres=172.20.25.41
232	echo "+++ WARNING: return_addres changed to $return_addres !!!!!"
233	fi
234	# if [[ $return_addres = 210.117.65.1 ]]
235	# if [[ $(nslookup `hostname` 2>&1 \| grep -c 210.117.65.1) = 1 ]]
236	# then
237	# [[ $localhost_realname = gfdl3.yonsei.ac.kr ]] && return_addres=165.132.26.56
238	# fi
239	return_password=""
240	return_username=$LOGNAME
241	remotecall=false
242	remote_username=""
243	run_coupled_model=false
244	run_mode=""
245	scirocco=false
246	store_on_archive_system=true
247	striche=" ----------------------------------------------------------------------------"
248	silent=false
249	source_list=""
250	source_path=SOURCE
251	tasks_per_node=""
252	threads_per_task=1
253	tmpcreate=false
254	tmp_data_catalog=""
255	transfer_problems=false
256	usern=$LOGNAME
257	working_directory=`pwd`
258	TOPT=""
259	XOPT=""
260	zeit=$( date \| cut -c 12-19 )
261
262	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
263	typeset -i cputime i ii iii icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
264
265	typeset -R30 calltime
266	typeset -L20 spalte1
267	typeset -L40 spalte2
268	typeset -L60 spalte3
269	typeset -L35 string1=`date`
270	typeset -L12 string2=$usern
271	typeset -L12 string3=$localhost_realname
272	typeset -L12 string4
273	typeset -L12 string5
274	typeset -L30 version="MRUN 2.0 Rev$Rev: 164 $"
275
276
277
278	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
279	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
280
281	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
282	# EXPORTIERT WERDEN
283	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
284	export group_number input_list memory numprocs output_list queue run_mode
285
286
287
288	# FEHLERBEHANDLUNG
289	# BEI EXIT:
290	trap 'rm -rf $working_directory/tmp_mrun
291	if [[ $locat != localhost ]]
292	then
293	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
294	# then
295	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
296	#MRUN-calls on $localhost
297	#
298	#date and time user localhost remotehost termination mrun-command
299	#--------------------------------------------------------------------------------------------------------------------
300	#%STATEND%
301	# chmod 666 ${mrun_path}/statistik/mrun_statistik
302	# fi
303	#
304	# # EINTRAG IN DIE STATISTIK-DATEI
305	# string4=$host
306	# string5=$locat
307	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
308	# then
309	# if [[ $do_batch = true ]]
310	# then
311	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
312	# else
313	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
314	# fi
315	# fi
316	echo " " > /dev/null
317	fi
318
319	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
320	then
321
322	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
323	(( i = 0 ))
324	while (( i < iec ))
325	do
326	(( i = i + 1 ))
327	printf "\n *** Execution of ERROR-command:\n"
328	printf " >>> ${err_command[$i]}\n"
329	eval ${err_command[$i]}
330	done
331	if [[ -n $interpreted_config_file ]] then
332	rm -rf $interpreted_config_file
333	fi
334	if [[ -n .mrun_environment ]] then
335	rm -rf .mrun_environment
336	fi
337	if [[ $tmpcreate = true ]]
338	then
339	printf "\n *** Contents of \"$TEMPDIR\":\n"
340	ls -al; cd
341	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
342	fi
343	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
344	then
345	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
346	fi
347	printf "\n\n+++ MRUN killed \n\n"
348	elif [[ $locat != control_c ]]
349	then
350	printf "\n\n --> all actions finished\n\n"
351	printf " Bye, bye $usern !!\n\n"
352	fi' exit
353
354
355	# BEI TERMINAL-BREAK:
356	trap 'rm -rf $working_directory/tmp_mrun
357	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
358	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
359	then
360	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
361	fi
362	printf "\n+++ MRUN killed by \"^C\" \n\n"
363	locat=control_c
364	exit
365	' 2
366
367
368	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
369	# BEEN SET
370	if [[ "$PALM_BIN" = "" ]]
371	then
372	printf "\n +++ environment variable PALM_BIN has not been set"
373	printf "\n please set it to the directory where the PALM scripts are located"
374	locat=palm_bin; exit
375	fi
376	export PATH=$PALM_BIN:$PATH
377
378
379
380	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
381	# FUER FOLGEJOBS BENOETIGT WIRD
382	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:Op:P:q:r:R:s:St:T:u:U:vxX:Y option
383	do
384	case $option in
385	(a) afname=$OPTARG;;
386	(A) store_on_archive_system=false; mc="$mc -A";;
387	(b) do_batch=true; mc="$mc -b";;
388	(B) delete_temporary_catalog=false; mc="$mc -B";;
389	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
390	(C) restart_run=true; mc="$mc -C";;
391	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
392	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D$OPTARG";;
393	(F) job_on_file="-D"; mc="$mc -F";;
394	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
395	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
396	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
397	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
398	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
399	(I) ignore_archive_error=true; mc="$mc -I";;
400	(k) keep_data_from_previous_run=true; mc="$mc -k";;
401	(K) additional_conditions="$OPTARG"; mc="$mc -K$OPTARG";;
402	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
403	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
404	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
405	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
406	(O) use_openmp=true; mc="$mc -O";;
407	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
408	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
409	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
410	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
411	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
412	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
413	(S) read_from_config=false; mc="$mc -S";;
414	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
415	(T) tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
416	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
417	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
418	(v) silent=true; mc="$mc -v";;
419	(x) do_trace=true;set -x; mc="$mc -x";;
420	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
421	(Y) run_coupled_model=true; mc="$mc -Y";;
422	(\?) printf "\n +++ unknown option $OPTARG \n"
423	printf "\n --> type \"$0 ?\" for available options \n"
424	locat=parameter;exit;;
425	esac
426	done
427
428
429	# EVTL. POSITIONSPARAMETER EINLESEN
430	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
431	shift OPTIND-1
432
433
434	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
435	if [[ "$1" = "?" ]]
436	then
437	(printf "\n *** mrun can be called as follows:\n"
438	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. <modus>\n"
439	printf "\n Description of available options:\n"
440	printf "\n Option Description Default-Value"
441	printf "\n -a base name of input files equiv. -d"
442	printf "\n -A no archiving when using file-attribute fl"
443	printf "\n -b batch-job on local machine ---"
444	printf "\n -B do not delete temporary directory at end ---"
445	printf "\n -c configuration file .mrun.config"
446	printf "\n -d base name of files attached to program test"
447	printf "\n -D preprocessor(cpp)-directives \"\" "
448	printf "\n -F create remote job file only ---"
449	printf "\n -h execution host $localhost_realname"
450	printf "\n -i INPUT control list \"\" "
451	printf "\n -I archiving errors of previous batch-jobs"
452	printf "\n will be ignored"
453	printf "\n -k keep data from previous run"
454	printf "\n -K additional conditions for controling"
455	printf "\n usage of conditional code and"
456	printf "\n env-variables in configuration file \"\" "
457	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
458	printf "\n -M Makefile name Makefile"
459	printf "\n -n node usage (shared/not_shared) depending on -h"
460	printf "\n -o OUTPUT control list \"\" "
461	printf "\n -O use OpenMP ---"
462	printf "\n -p software package list \"\" "
463	printf "\n -q queue \"$queue\" "
464	printf "\n -r run control list (combines -i -o) \"\" "
465	printf "\n -s filenames of routines to be compiled \"\" "
466	printf "\n must end with .f, .f90, .F, or .c !"
467	printf "\n use \"..\" for more than one file and wildcards"
468	printf "\n -s TEST compiles all files with w-permit"
469	printf "\n -S config file interpreted by shellscript ---"
470	printf "\n -t allowed cpu-time in seconds (batch) 0"
471	printf "\n -T tasks per node depending on -h"
472	printf "\n -u username on remote machine \"\" "
473	printf "\n -v no prompt for confirmation ---"
474	printf "\n -x tracing of mrun for debug purposes ---"
475	printf "\n -X # of processors (on parallel machines) 1"
476	printf "\n -Y run coupled model ---"
477	printf "\n "
478	printf "\n Possible values of positional parameter <modus>:"
479	printf "\n \"?\" - this outline \n\n") \| more
480	exit
481	elif [[ "$1" != "" ]]
482	then
483	printf "\n +++ positional parameter $1 unknown \n"
484	locat=parameter; exit
485	fi
486
487
488
489	# KURZE STARTMELDUNG
490	printf "\n*** $version "
491	printf "\n will be executed. Please wait ..."
492
493
494
495	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
496	if [[ ! -f $config_file ]]
497	then
498	printf "\n\n +++ configuration file: "
499	printf "\n $config_file"
500	printf "\n does not exist"
501	locat=connect; exit
502	fi
503
504
505	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
506	line=""
507	grep "%host_identifier" $config_file > tmp_mrun
508	while read line
509	do
510	if [[ "$line" != "" \|\| $(echo $line \| cut -c1) != "#" ]]
511	then
512	HOSTNAME=`echo $line \| cut -d" " -s -f2`
513	host_identifier=`echo $line \| cut -d" " -s -f3`
514	if [[ $localhost_realname = $HOSTNAME ]]
515	then
516	localhost=$host_identifier
517	break
518	fi
519	fi
520	done < tmp_mrun
521
522	if [[ "$localhost" = "" ]]
523	then
524	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
525	printf "\n for local host \"$localhost_realname\"."
526	printf "\n Please add line"
527	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
528	printf "\n to the configuration file."
529	locat=localhost; exit
530	fi
531
532
533
534	# HOSTSPEZIFISCHE VARIABLEN SETZEN
535	case $localhost_realname in
536	(breg-en0\|berni-en0) archive_system=tivoli;;
537	(cs*) archive_system=ut;;
538	(fimm.bccs.uib.no) fimm=true;;
539	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
540	(hreg-en0\|hanni-en0) archive_system=tivoli;;
541	(scirocco) scirocco=true;;
542	esac
543
544
545
546	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
547	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
548	[[ "$afname" = "" ]] && afname=$fname
549
550
551	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
552	if [[ "$run_mode" != "" ]]
553	then
554	input_list="$input_list $run_mode"
555	output_list="$output_list $run_mode"
556	fi
557
558
559	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
560	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
561	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
562	# STARTET)
563	if [[ "$fromhost" = "" ]]
564	then
565	fromhost=$localhost
566	fi
567
568
569	# PRUEFEN, OB MRUN NUR TESTWEISE AUF DER LOKALEN MASCHINE KOMPILIEREN SOLL
570	if [[ "$source_list" = LOCAL_COMPILE_TEST ]]
571	then
572	source_list=TEST
573	local_compile=true
574	host=$localhost
575	fi
576
577
578	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
579	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
580	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
581	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
582	if [[ -n $host && "$host" != $localhost ]]
583	then
584	do_batch=true
585	do_remote=true
586	case $host in
587	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|nech\|neck\|lcsgib\|lcsgih\|lctit\|unics) true;;
588	(*) printf "\n"
589	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
590	printf "\n is not available"
591	locat=nqs; (( iec = 0 )); exit;;
592	esac
593	else
594	host=$localhost
595	fi
596
597
598	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
599	if [[ -n $additional_conditions ]]
600	then
601	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
602	cond1=`echo $additional_conditions \| cut -d" " -f1`
603	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
604	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
605	if [[ -n $dummy ]]
606	then
607	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
608	locat=options; exit
609	fi
610	fi
611
612
613	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
614	# ARCHIVIERUNG FEHLGESCHLAGEN IST
615	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
616	then
617	if [[ $ignore_archive_error = false ]]
618	then
619	printf "\n +++ data archiving of previous run failed"
620	printf "\n see directory \~/job_queue on remote machine"
621	locat=archive; exit
622	else
623	printf "\n +++ warning: data archiving in a previous run failed"
624	printf "\n MRUN continues, trying to get backup copy"
625	fi
626	fi
627
628
629
630	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
631	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
632	if [[ "$read_from_config" = false ]]
633	then
634
635	[[ $silent = false ]] && printf "\n Reading the configuration file... "
636	while read zeile
637	do
638	[[ $silent = false ]] && printf "."
639
640
641	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
642	# ERSETZEN
643	eval zeile=\"$zeile\"
644
645
646	# INTERPRETATION DER ZEILE
647	if [[ "$(echo $zeile)" = "" ]]
648	then
649	# LEERZEILE, KEINE AKTION
650	continue
651
652	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
653	then
654
655	# ZEILE IST KOMMENTARZEILE
656	true
657
658	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
659	then
660
661	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
662	zeile=$(echo $zeile \| cut -c2-)
663	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
664	var=`echo $zeile \| cut -d" " -f1`
665	value=`echo $zeile \| cut -d" " -s -f2`
666	for_host=`echo $zeile \| cut -d" " -s -f3`
667	for_cond1=`echo $zeile \| cut -d" " -s -f4`
668	for_cond2=`echo $zeile \| cut -d" " -s -f5`
669
670	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
671	then
672
673	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
674	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
675	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
676
677
678	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
679	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
680	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
681	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
682	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
683	# KONFIGURATIONSDATEI
684	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
685	then
686	eval $var=\$value
687
688	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
689	if [[ $do_trace = true ]]
690	then
691	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
692	fi
693	fi
694
695	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
696	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
697	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
698	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
699	if [[ $var = host ]]
700	then
701	if [[ -n $host && "$host" != $localhost ]]
702	then
703	do_batch=true
704	do_remote=true
705	case $host in
706	(ibm\|ibms\|ibmy\|lcsgib\|lcsgih\|lctit\|nech\|neck\|unics) true;;
707	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
708	printf "\n is not available"
709	locat=nqs; exit;;
710	esac
711	else
712	host=$localhost
713	fi
714	fi
715
716	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
717	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
718	# DEN PROGRAMMEN BENOETIGT WERDEN
719	export $var
720	fi
721
722
723
724
725	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
726	then
727
728	# ZEILE DEFINIERT ERROR-KOMMANDO
729	(( iec = iec + 1 ))
730	zeile=$(echo $zeile \| cut -c4-)
731	err_command[$iec]="$zeile"
732
733	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
734	then
735
736	# ZEILE DEFINIERT INPUT-KOMMANDO
737	(( iic = iic + 1 ))
738	zeile=$(echo $zeile \| cut -c4-)
739	in_command[$iic]="$zeile"
740
741	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
742	then
743
744	# ZEILE DEFINIERT OUTPUT-KOMMANDO
745	(( ioc = ioc + 1 ))
746	zeile=$(echo $zeile \| cut -c4-)
747	out_command[$ioc]="$zeile"
748
749	else
750
751	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
752	# s2a: in/out - Feld
753	# s2b: loc - Feld (optional)
754	# s2c: tr/ar - Feld (optional)
755	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
756	s1=`echo $zeile \| cut -d" " -f1`
757	s2=`echo $zeile \| cut -d" " -s -f2`
758	s2a=$(echo $s2 \| cut -d":" -f1)
759	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
760	then
761	s2b=""
762	s2c=""
763	else
764	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
765	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
766	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
767	fi
768	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
769	s3=`echo $zeile \| cut -d" " -f3`
770	s4=`echo $zeile \| cut -d" " -s -f4`
771	s5=`echo $zeile \| cut -d" " -s -f5`
772	s6=`echo $zeile \| cut -d" " -s -f6`
773
774
775	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
776	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
777	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
778	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
779	# HANDEN SEIN MUSS (D.H. s2b = loc)
780	IFSALT="$IFS"; IFS="$IFS:"
781	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
782	then
783	found=false
784	for actual in $input_list
785	do
786	for formal in $s3
787	do
788	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
789	done
790	done
791	if [[ $found = true ]]
792	then
793	(( iin = iin + 1 ))
794	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
795	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
796	extin[$iin]=$s6
797	fi
798	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
799	then
800	found=false
801	for actual in $output_list
802	do
803	for formal in $s3
804	do
805	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
806	done
807	done
808	if [[ $found = true ]]
809	then
810	(( iout = iout + 1 ))
811	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
812	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
813	fi
814	elif [[ "$s2a" != in && "$s2a" != out ]]
815	then
816	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
817	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
818	locat=connect; exit
819	fi
820	IFS="$IFSALT"
821	fi
822	done < $config_file
823
824	else
825
826
827	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
828	[[ $silent = false ]] && printf "..."
829	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
830	export interpreted_config_file=.icf.$RANDOM
831
832
833
834	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
835	# VERFUEGUNG STELLEN
836	cat > .mrun_environment << %%END%%
837	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
838	config_file = '$config_file', do_remote = '$do_remote',
839	do_trace = '$do_trace', host = '$host',
840	input_list = '$input_list', icf = '$interpreted_config_file',
841	localhost = '$localhost', output_list = '$output_list' /
842
843	%%END%%
844
845	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
846	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
847	mrun_memory=$memory
848	mrun_group_number=$group_number
849	mrun_cpumax=$cpumax
850	mrun_numprocs=$numprocs
851
852	if [[ $localhost_realname = "gate" ]]
853	then
854	interpret_config_gate.x
855	else
856	interpret_config.x
857	fi
858	rm .mrun_environment
859
860
861	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
862	chmod u+x $interpreted_config_file
863	export PATH=$PATH:.
864	. $interpreted_config_file
865	rm $interpreted_config_file
866
867
868	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
869	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
870	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
871	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
872	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
873
874	fi
875
876
877	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
878	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
879	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
880	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
881	if [[ "$SOURCES_COMPLETE" = "" ]]
882	then
883
884	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
885	# VEREINBART WURDE
886	source_path=""
887	line=""
888	grep "%source_path" $config_file > tmp_mrun
889	while read line
890	do
891	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
892	then
893	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
894	then
895	global_source_path=`echo $line \| cut -d" " -f2`
896	fi
897	fi
898	done < tmp_mrun
899
900	line=""
901	found=false
902	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
903	while read line
904	do
905	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
906	then
907	if [[ $found = true ]]
908	then
909	printf "\n\n +++ more than one source path found in configuration file"
910	printf "\n for local host \"$localhost\" "
911	locat=source_path; exit
912	fi
913	source_path=`echo $line \| cut -d" " -f2`
914	found=true
915	fi
916	done < tmp_mrun
917	rm tmp_mrun
918
919	if [[ "$source_path" = "" ]]
920	then
921	if [[ "$global_source_path" != "" ]]
922	then
923	source_path=$global_source_path
924	else
925	printf "\n\n +++ no source path found in configuration file"
926	printf "\n for local host \"$localhost\" "
927	locat=source_path; exit
928	fi
929	fi
930	eval source_path=$source_path
931
932	if [[ ! -d $source_path ]]
933	then
934	printf "\n\n +++ source path \"$source_path\" on local host"
935	printf "\n \"$localhost\" does not exist"
936	locat=source_path; exit
937	fi
938
939	fi
940
941
942	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
943	# DURCH OPTION -G MITGETEILT)
944	if [[ "$global_revision" = "" ]]
945	then
946	global_revision=`svnversion $source_path 2>/dev/null`
947	global_revision="Rev: $global_revision"
948	fi
949
950
951	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
952	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
953	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
954	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
955	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
956	if [[ -n $host && "$host" != $localhost ]]
957	then
958	do_batch=true
959	do_remote=true
960	case $host in
961	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|lcsgib\|lcsgih\|lctit\|nech\|neck\|unics) true;;
962	(*) printf "\n"
963	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
964	printf "\n is not available"
965	locat=nqs; (( iec = 0 )); exit;;
966	esac
967	else
968	host=$localhost
969	fi
970
971
972	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
973	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
974	then
975
976	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
977	if [[ ! -n $numprocs ]]
978	then
979	printf "\n"
980	printf "\n +++ option \"-K parallel\" requires additional specification"
981	printf "\n of the number of processors to be used by"
982	printf "\n mrun-option \"-X\" or by environment-variable"
983	printf "\n \"numprocs\" in the configuration file"
984	locat=numprocs; (( iec = 0 )); exit
985	fi
986
987	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
988	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
989	# GESAMTPROZESSORANZAHL IST
990	if [[ $host = nech \|\| $host = neck \|\| $host = ibmh \|\| $host = ibmb \|\| $host = ibms ]]
991	then
992	[[ "$tasks_per_node" = "" ]] && tasks_per_node=6
993	(( ival = $tasks_per_node ))
994	(( pes = numprocs ))
995	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
996	# then
997	# (( pes = pes - 1 ))
998	# fi
999	(( ii = pes / ival ))
1000	if (( pes - ii * ival > 0 ))
1001	then
1002	printf "\n"
1003	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1004	printf "\n divisor of the total number of processors (option \"-X\")"
1005	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1006	locat=tasks_per_node; (( iec = 0 )); exit
1007	fi
1008	fi
1009
1010	# IBMY HAT NUR EINEN KNOTEN
1011	if [[ $host = ibmy ]]
1012	then
1013	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1014	then
1015	printf "\n"
1016	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1017	printf "\n total number of processors (option \"-X\")"
1018	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1019	locat=tasks_per_node; (( iec = 0 )); exit
1020	fi
1021	fi
1022
1023	# FALLS OPENMP PARALLELISIERUNG VERWENDET WERDEN SOLL, ANZAHL VON THREADS
1024	# SETZEN UND ZAHL DER TASKS PRO KNOTEN AUF 1 SETZEN
1025	if [[ $use_openmp = true ]]
1026	then
1027	threads_per_task=$tasks_per_node
1028	tasks_per_node=1
1029	fi
1030	OOPT="-O $threads_per_task"
1031	TOPT="-T $tasks_per_node"
1032
1033	# GESAMTZAHL DER KNOTEN BESTIMMEN
1034	if [[ "$tasks_per_node" != "" ]]
1035	then
1036	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1037	fi
1038
1039	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1040	# SETZEN
1041	if [[ $node_usage = default ]]
1042	then
1043	if [[ $host = ibms ]]
1044	then
1045	node_usage=shared
1046	elif [[ $host = lctit ]]
1047	then
1048	node_usage=sla3
1049	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1050	then
1051	node_usage=singlejob
1052	else
1053	node_usage=not_shared
1054	fi
1055	fi
1056
1057	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]]
1058	then
1059	printf "\n"
1060	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1061	printf "\n \"shared\" or \"not_shared\""
1062	locat=tasks_per_node; (( iec = 0 )); exit
1063	fi
1064
1065	fi
1066
1067	# PRUEFEN, OB HOSTFILE EXISTIERT
1068	if [[ -n $hostfile ]]
1069	then
1070	if [[ ! -f $hostfile ]]
1071	then
1072	printf "\n"
1073	printf "\n +++ hostfile \"$hostfile\" does not exist"
1074	locat=hostfile; exit
1075	fi
1076	fi
1077
1078	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1079	if [[ $host = ibmy && $do_remote = false ]]
1080	then
1081	if [[ ! -f $HOME/.rhosts ]]
1082	then
1083	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1084	printf "\n\n *** file:"
1085	printf "\n $HOME/.rhosts"
1086	printf "\n was created\n"
1087	fi
1088	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1089	then
1090	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1091	printf "\n\n *** file:"
1092	printf "\n $HOME/.rhosts"
1093	printf "\n was extended by the name of the current host\n"
1094	fi
1095	fi
1096
1097
1098
1099	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1100	if [[ $queue = none ]]
1101	then
1102	case $host in
1103	(ibmb) if [[ $node_usage = shared ]]
1104	then
1105	queue=cshare
1106	else
1107	queue=csolo
1108	fi;;
1109	(ibmh) if [[ $node_usage = shared ]]
1110	then
1111	queue=cshare
1112	else
1113	queue=csolo
1114	fi;;
1115	(ibmy) queue=parallel;;
1116	(lctit) queue=sla3;;
1117	(nech) queue=none;;
1118	(neck) queue=P;;
1119	(unics) queue=unics;;
1120	esac
1121	fi
1122
1123
1124	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1125	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1126	# ERMITTELN
1127	(( i = 0 ))
1128	while (( i < iin ))
1129	do
1130	(( i = i + 1 ))
1131	(( maxcycle = 0 ))
1132
1133	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1134	if [[ "${actionin[$i]}" = di ]]
1135	then
1136	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1137	# REM-MASCHINE AUSWERTEN
1138	eval filename=${pathin[$i]}/${endin[$i]}
1139	else
1140	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1141	# REM-MASCHINE AUSWERTEN
1142	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1143	fi
1144
1145	# PRUEFEN AUF VORHANDENSEIN
1146	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1147	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1148	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1149	then
1150	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1151	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1152	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1153	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1154	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1155	if [[ "${transin[$i]}" != "locopt" ]]
1156	then
1157	printf "\n\n +++ INPUT-file: "
1158	if [[ "${extin[$i]}" = "" ]]
1159	then
1160	printf "\n $filename"
1161	else
1162	printf "\n $filename.${extin[$i]}"
1163	fi
1164	printf "\n does not exist\n"
1165	locat=input; exit
1166	else
1167	transin[$i]="unavailable"
1168	fi
1169	else
1170
1171	# ZYKLUSNUMMER FESTSTELLEN
1172	ls -1 -d $filename > filelist 2>/dev/null
1173	ls -1 -d $filename.* >> filelist 2>/dev/null
1174	while read zeile
1175	do
1176	cycle=$(print $zeile \| cut -f2 -d".")
1177	if [[ "$cycle" = "$zeile" ]]
1178	then
1179	(( icycle = 0 ))
1180	elif [[ "$cycle" = "${extin[$i]}" ]]
1181	then
1182	(( icycle = 0 ))
1183	else
1184	(( icycle = $cycle ))
1185	fi
1186	if (( icycle > maxcycle ))
1187	then
1188	(( maxcycle = icycle ))
1189	file_to_be_used=$zeile
1190	fi
1191	done <filelist
1192	rm filelist
1193
1194	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1195	if (( maxcycle > 0 ))
1196	then
1197	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1198	then
1199	filename=${filename}.$maxcycle.${extin[$i]}
1200	else
1201	filename=${filename}.$maxcycle
1202	fi
1203	else
1204	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1205	then
1206	filename=${filename}.${extin[$i]}
1207	fi
1208	fi
1209
1210	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1211	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1212	absnamein[$i]=$filename
1213	if (( maxcycle > 0 ))
1214	then
1215	if [[ "${actionin[$i]}" = di ]]
1216	then
1217	frelin[$i]=${endin[$i]}.$maxcycle
1218	else
1219	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1220	fi
1221	else
1222	if [[ "${actionin[$i]}" = di ]]
1223	then
1224	frelin[$i]=${endin[$i]}
1225	else
1226	frelin[$i]=${afname}${endin[$i]}
1227	fi
1228	fi
1229
1230	fi
1231	done
1232
1233
1234	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1235	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1236	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1237	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1238	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1239	(( i = 0 ))
1240	while (( i < iout ))
1241	do
1242	(( i = i + 1 ))
1243	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1244	then
1245	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = trpe ]]
1246	then
1247	actionout[$i]=""
1248	elif [[ "${actionout[$i]}" = tra ]]
1249	then
1250	actionout[$i]=a
1251	fi
1252	(( maxcycle = 0 ))
1253	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1254	eval catalogname=${pathout[$i]}
1255	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1256	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1257	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1258	then
1259
1260	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1261	if cat /dev/null > $filename
1262	then
1263	rm $filename
1264	else
1265
1266	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1267	if [[ ! -d $catalogname ]]
1268	then
1269	if mkdir -p $catalogname
1270	then
1271	printf "\n\n *** directory:"
1272	printf "\n $catalogname"
1273	printf "\n was created\n"
1274	else
1275	printf "\n\n +++ OUTPUT-file:"
1276	printf "\n $filename"
1277	printf "\n cannot be created, because directory does not exist"
1278	printf "\n and cannot be created either"
1279	printf "\n"
1280	locat=output ; exit
1281	fi 2>/dev/null
1282	else
1283	printf "\n\n +++ OUTPUT-file:"
1284	printf "\n $filename"
1285	printf "\n cannot be created, although directory exists"
1286	printf "\n"
1287	locat=output ; exit
1288	fi
1289	fi 2>/dev/null
1290	else
1291
1292	# ZYKLUSNUMMER FESTSTELLEN
1293	ls -1 -d $filename > filelist 2>/dev/null
1294	ls -1 -d $filename.* >> filelist 2>/dev/null
1295	while read zeile
1296	do
1297	cycle=$(print $zeile \| cut -f2 -d".")
1298	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1299	then
1300	(( icycle = 1 ))
1301	else
1302	(( icycle = $cycle + 1 ))
1303	fi
1304	if (( icycle > maxcycle ))
1305	then
1306	(( maxcycle = icycle ))
1307	fi
1308	done <filelist
1309	rm filelist
1310	fi
1311
1312	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1313	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1314	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1315	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1316	if [[ "${actionout[$i]}" != a ]]
1317	then
1318	if (( maxcycle > 0 ))
1319	then
1320	filename=${filename}.$maxcycle
1321	if cat /dev/null > $filename
1322	then
1323	rm $filename
1324	else
1325	printf "\n +++ OUTPUT-file:"
1326	printf "\n $filename"
1327	printf "\n cannot be created"
1328	locat=output ; exit
1329	fi
1330	fi
1331	else
1332	(( maxcycle = maxcycle - 1 ))
1333	if (( maxcycle > 0 ))
1334	then
1335	filename=${filename}.$maxcycle
1336	fi
1337	fi
1338
1339	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1340	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1341	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1342	pathout[$i]=$filename
1343	if (( maxcycle > 0 ))
1344	then
1345	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1346	else
1347	frelout[$i]=${fname}${endout[$i]}
1348	fi
1349
1350	fi
1351	done
1352
1353
1354	# DAS DVRP-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1355	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1356	then
1357	if [[ "$dvrp_inc" = "" ]]
1358	then
1359	printf "\n\n +++ no value for \"dvrp_inc\" given in configuration file"
1360	printf "\n This is required for the dvrp_graphics package.\n"
1361	locat=dvrp; exit
1362	fi
1363	if [[ "$dvrp_lib" = "" ]]
1364	then
1365	printf "\n\n +++ no value for \"dvrp_lib\" given in configuration file"
1366	printf "\n This is required for the dvrp_graphics package.\n"
1367	locat=dvrp; exit
1368	fi
1369	fi
1370
1371
1372	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1373	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1374	# UEBERSETZT ZU WERDEN)
1375	if [[ "$mainprog" = "" && "$executable" = "" ]]
1376	then
1377	printf "\n +++ neither main program nor executable defined"
1378	locat=source; exit
1379	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1380	then
1381	printf "\n +++ main program as well as executable defined"
1382	locat=source; exit
1383	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1384	then
1385	do_compile=false
1386	fi
1387
1388
1389	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1390	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1391	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1392	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1393	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1394	then
1395
1396	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1397	[[ "$source_list" = WP ]] && source_list=WRITE_PERMIT
1398
1399	if [[ $restart_run != true ]]
1400	then
1401	rm -rf SOURCES_FOR_RUN_$fname
1402	mkdir SOURCES_FOR_RUN_$fname
1403	fi
1404
1405
1406	# EVTL. ZU UEBERSETZENDE PROGRAMMTEILE DADURCH BESTIMMEN, DASS GEPRUEFT
1407	# WIRD, WELCHE DATEIEN WRITE-PERMIT BESITZEN (DATEIEN SOLLTEN DESHALB
1408	# UNTER RCS-KONTROLLE STEHEN). MIT DER VARIABLEN EXCLUDE KOENNEN
1409	# BESTIMMTE DATEIEN GRUNDSAETZLICH VON DER UEBERSETZUNG AUSGESCHLOSSEN
1410	# WERDEN. DIES IST NUR BEI MANUELLEM START VON MRUN DURCH DEN BENUTZER
1411	# MOEGLICH, DA BEI AUTOMATISCHEN RESTARTS TEST DURCH DIE TATSAECHLICH
1412	# ZU UBERSETZENDEN DATEIEN ERSETZT IST.
1413	# ALLE ERMITTELTEN DATEIEN WERDEN IM VERZEICHNIS SOURCES_FOR_RUN_...
1414	# GESAMMELT
1415	if [[ "$source_list" = WRITE_PERMIT ]]
1416	then
1417
1418	source_list=""
1419	cd $source_path
1420
1421
1422	# ALLE MOEGLICHEN QUELLCODEDATEIEN AUFLISTEN
1423	Names=$(ls -1 *.f90 2>&1)
1424	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && Filenames="$Names"
1425	Names=$(ls -1 *.F90 2>&1)
1426	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && Filenames="$Filenames $Names"
1427	Names=$(ls -1 *.F 2>&1)
1428	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && Filenames="$Filenames $Names"
1429	Names=$(ls -1 *.f 2>&1)
1430	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && Filenames="$Filenames $Names"
1431	Names=$(ls -1 *.c 2>&1)
1432	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && Filenames="$Filenames $Names"
1433
1434
1435	# DATEIEN MIT WRITE-PERMIT NACH SOURCES_FOR_RUN_... KOPIEREN
1436	for dateiname in $Filenames
1437	do
1438	if [[ -w $dateiname ]]
1439	then
1440	if [[ "$exclude" = "" \|\| $(echo $exclude \| grep -c $dateiname) = 0 ]]
1441	then
1442	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1443	source_list=$source_list"$dateiname "
1444	fi
1445	fi
1446	done
1447
1448	cd - > /dev/null
1449
1450
1451	elif [[ "$source_list" = LOCALLY_MODIFIED ]]
1452	then
1453
1454	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1455	source_list=""
1456	cd $source_path
1457
1458
1459	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1460	if [[ ! -d .svn ]]
1461	then
1462	printf "\n\n +++ source directory"
1463	printf "\n \"$source_path\" "
1464	printf "\n is not under control of \"subversion\"."
1465	printf "\n Please do not use mrun-option \"-s LOCALLY MODIFIED\"\n"
1466	fi
1467
1468
1469	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1470	Filenames=""
1471	svn status > tmp_mrun
1472	while read line
1473	do
1474	firstc=`echo $line \| cut -c1`
1475	if [[ $firstc = M \|\| $firstc = "?" ]]
1476	then
1477	Name=`echo "$line" \| cut -c8-`
1478	extension=`echo $Name \| cut -d. -f2`
1479	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1480	then
1481	Filenames="$Filenames "$Name
1482	fi
1483	fi
1484	done < tmp_mrun
1485
1486
1487	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1488	for dateiname in $Filenames
1489	do
1490	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1491	source_list=$source_list"$dateiname "
1492	done
1493
1494	cd - > /dev/null
1495
1496
1497	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1498	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1499	# VORHANDEN
1500	elif [[ "$source_list" != "" && $restart_run != true ]]
1501	then
1502
1503	cd $source_path
1504
1505	for filename in $source_list
1506	do
1507
1508	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1509	if [[ $(print $filename \| grep -c "/") != 0 ]]
1510	then
1511	printf "\n +++ source code file: $filename"
1512	printf "\n must not contain (\"/\") "
1513	locat=source; exit
1514	fi
1515
1516	if [[ ! -f $filename ]]
1517	then
1518	printf "\n +++ source code file: $filename"
1519	printf "\n does not exist"
1520	locat=source; exit
1521	else
1522	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1523	fi
1524
1525	done
1526
1527	cd - > /dev/null
1528
1529	fi
1530
1531
1532	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1533	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1534	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1535	if [[ $restart_run != true ]]
1536	then
1537
1538	if [[ ! -f "$source_path/$mainprog" ]]
1539	then
1540	printf "\n\n +++ main program: $mainprog"
1541	printf "\n does not exist in source directory"
1542	printf "\n \"$source_path\"\n"
1543	locat=source; exit
1544	else
1545	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1546	then
1547	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1548	source_list=${mainprog}" $source_list"
1549	fi
1550	fi
1551	fi
1552
1553
1554	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1555	if [[ $restart_run != true && "$add_source_path" != "" ]]
1556	then
1557
1558	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1559	if [[ ! -d $add_source_path ]]
1560	then
1561	printf "\n\n +++ WARNING: additional source code directory"
1562	printf "\n \"$add_source_path\" "
1563	printf "\n does not exist or is not a directory."
1564	printf "\n No source code will be used from this directory!\n"
1565	add_source_path=""
1566	sleep 3
1567	else
1568
1569	cd $add_source_path
1570
1571	Names=$(ls -1 *.f90 2>&1)
1572	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1573	Names=$(ls -1 *.F90 2>&1)
1574	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1575	Names=$(ls -1 *.F 2>&1)
1576	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1577	Names=$(ls -1 *.f 2>&1)
1578	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1579	Names=$(ls -1 *.c 2>&1)
1580	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1581
1582	cd - > /dev/null
1583	cd SOURCES_FOR_RUN_$fname
1584
1585	for dateiname in $AddFilenames
1586	do
1587	if [[ -f $dateiname ]]
1588	then
1589	printf "\n +++ source code file \"$dateiname\" found in additional"
1590	printf "\n source code directory \"$add_source_path\" "
1591	printf "\n as well as in directory \"$source_path\"."
1592	locat=source; exit
1593	fi
1594
1595	cp $add_source_path/$dateiname .
1596	source_list="$source_list $dateiname"
1597
1598	# Default User-Interface von der Liste entfernen, falls Datei
1599	# ein User-Interface enthaelt
1600	if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1601	then
1602	if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1603	then
1604	rm -rf user_interface.f90
1605	source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1606	printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1607	printf "\n since a user-interface is found in file"
1608	printf "\n \"$add_source_path/$dateiname\" \n"
1609	sleep 3
1610	else
1611	printf "\n\n *** user-interface file \"$dateiname\" "
1612	printf "\n added to the files to be translated \n"
1613	sleep 3
1614	fi
1615	fi
1616	done
1617
1618	cd - > /dev/null
1619	fi
1620	fi
1621
1622
1623	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1624	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1625	if [[ $restart_run != true && -n $package_list ]]
1626	then
1627
1628	cd $source_path
1629
1630	for package in $package_list
1631	do
1632
1633	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1634
1635	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1636	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1637	# LIEFERT
1638	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1639
1640
1641	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1642	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1643	for source_list_name in $package_source_list
1644	do
1645	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1646	then
1647
1648	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1649	ending=`echo $source_list_name \| cut -f2 -d.`
1650	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1651	then
1652	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1653	source_list="$source_list $source_list_name"
1654	fi
1655	fi
1656	done
1657	done
1658
1659	cd - > /dev/null
1660	fi
1661
1662
1663	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1664	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1665	if [[ "$restart_run" != true ]]
1666	then
1667	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1668	if [[ ! -f $makefile ]]
1669	then
1670	printf "\n +++ file \"$makefile\" does not exist"
1671	locat=make; exit
1672	else
1673	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1674	fi
1675	fi
1676
1677	fi # do_compile=true
1678
1679
1680	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1681	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1682	if [[ $do_compile = true ]]
1683	then
1684
1685	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1686	# ZUSAMMENSETZEN
1687	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1688	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1689	then
1690	cpp_options="${cpp_options},-D__ibm=__ibm"
1691	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1692	then
1693	cpp_options="$cpp_options -D__nec"
1694	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1695	then
1696	cpp_options="$cpp_options -D__lc"
1697	else
1698	cpp_options="$cpp_options -D__$localhost"
1699	fi
1700
1701	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1702	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1703	then
1704	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1705	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1706	else
1707	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1708	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1709	fi
1710
1711	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1712	if [[ -n $package_list ]]
1713	then
1714	for package in $package_list
1715	do
1716	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1717	then
1718	if [[ $package != "dvrp_graphics+1PE" ]]
1719	then
1720	cpp_options="${cpp_options},-D__$package=__$package"
1721	else
1722	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1723	export use_seperate_pe_for_dvrp_output=true
1724	fi
1725	else
1726	if [[ $package != "dvrp_graphics+1PE" ]]
1727	then
1728	cpp_options="$cpp_options -D__$package"
1729	else
1730	cpp_options="$cpp_options -D__dvrp_graphics"
1731	export use_seperate_pe_for_dvrp_output=true
1732	fi
1733	fi
1734	done
1735	fi
1736
1737	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1738	if [[ -n $cpp_opts ]]
1739	then
1740	for popts in $cpp_opts
1741	do
1742	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1743	then
1744	cpp_options="${cpp_options},-D__$popts=__$popts"
1745	else
1746	cpp_options="$cpp_options -D__$popts"
1747	fi
1748	done
1749	fi
1750
1751	else
1752
1753
1754	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1755	if [[ $do_remote = false ]]
1756	then
1757	if [[ ! -f $executable ]]
1758	then
1759	printf "\n +++ executable file: $executable"
1760	printf "\n does not exist"
1761	locat=executable; exit
1762	fi
1763	fi
1764	fi
1765
1766
1767	# JOBMODUS FESTSTELLEN
1768	if [[ "$ENVIRONMENT" = BATCH && $localhost != lctit \|\| "$QUEUE" != interactive && $localhost = lctit ]]
1769	then
1770	jobmo=BATCH
1771	else
1772	jobmo=INTERACTIVE
1773	fi
1774
1775
1776	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1777	# DURCH BENUTZER ANDERWEITIG VEREINBART
1778	if [[ "$compiler_name" = "" ]]
1779	then
1780
1781	printf "\n +++ no compiler specified for \"$localhost $cond1 $cond2\""
1782	locat=compiler_name; exit
1783
1784	fi
1785
1786
1787	# COMPILER AUF NECK UEBERSCHREIBEN
1788	[[ $localhost = neck ]] && compiler_name=mpif90
1789
1790
1791
1792	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
1793	kennung=$RANDOM
1794	if [[ "$tmp_user_catalog" = "" ]]
1795	then
1796	if [[ $localhost = ibmb \|\| $localhost = ibmh ]]
1797	then
1798	tmp_user_catalog=$TMPDIR
1799	elif [[ $localhost = nech ]]
1800	then
1801	tmp_user_catalog=$WRKSHR
1802	else
1803	tmp_user_catalog=/tmp
1804	fi
1805	fi
1806	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
1807
1808
1809	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
1810	# BESTIMMEN
1811	if [[ "$tmp_data_catalog" = "" ]]
1812	then
1813	if [[ $localhost = ibmb \|\| $localhost = ibmh ]]
1814	then
1815	tmp_data_catalog=$WORK/mrun_restart_data
1816	elif [[ $localhost = nech ]]
1817	then
1818	tmp_data_catalog=$WRKSHR/mrun_restart_data
1819	else
1820	tmp_data_catalog=/tmp/mrun_restart_data
1821	fi
1822	fi
1823
1824
1825	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
1826	# ERSETZEN
1827	if [[ $do_remote = false && $do_compile = true ]]
1828	then
1829	eval fopts=\"$fopts\"
1830	eval lopts=\"$lopts\"
1831	fi
1832
1833
1834
1835	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
1836	fopts="$fopts $netcdf_inc $dvrp_inc"
1837	lopts="$lopts $netcdf_lib $dvrp_lib"
1838	ROPTS="$ropts"
1839	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxt4 ) && -n $numprocs ]]
1840	then
1841	XOPT="-X $numprocs"
1842	fi
1843
1844
1845
1846	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
1847	# GRAMM BENOETIGT
1848	done=false
1849	while [[ $done = false ]]
1850	do
1851	cputime=$cpumax
1852	if (( $cputime == 0 ))
1853	then
1854	printf "\n +++ cpu-time is undefined"
1855	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
1856	printf "\n >>> "
1857	read cputime 1>/dev/null 2>&1
1858	else
1859	done=true
1860	fi
1861	cpumax=$cputime
1862	done
1863
1864	(( minuten = cputime / 60 ))
1865	(( sekunden = cputime - minuten * 60 ))
1866
1867
1868	# PRUEFEN DER KERNSPEICHERANFORDERUNG
1869	if [[ $do_batch = true ]]
1870	then
1871	done=false
1872	while [[ $done = false ]]
1873	do
1874	if (( memory == 0 ))
1875	then
1876	printf "\n +++ memory demand is undefined"
1877	printf "\n >>> Please type memory in MByte per process as INTEGER:"
1878	printf "\n >>> "
1879	read memory 1>/dev/null 2>&1
1880	else
1881	done=true
1882	fi
1883	done
1884	fi
1885
1886
1887	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
1888	if [[ $do_remote = true && -z $remote_username ]]
1889	then
1890	while [[ -z $remote_username ]]
1891	do
1892	printf "\n +++ username on remote host \"$host\" is undefined"
1893	printf "\n >>> Please type username:"
1894	printf "\n >>> "
1895	read remote_username
1896	done
1897	mc="$mc -u$remote_username"
1898	fi
1899
1900	###########################################################################
1901	# HEADER-AUSGABE
1902	###########################################################################
1903
1904
1905	calltime=$(date)
1906	printf "\n"
1907	# [[ $silent = false ]] && clear
1908	printf "#--------------------------------------------------------------# \n"
1909	printf "\| $version$calltime \| \n"
1910	printf "\| \| \n"
1911	spalte1="called on:"; spalte2=$localhost_realname
1912	printf "\| $spalte1$spalte2 \| \n"
1913	if [[ $local_compile = false ]]
1914	then
1915	if [[ $do_remote = true ]]
1916	then
1917	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
1918	else
1919	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
1920	fi
1921	else
1922	spalte1="compiling test only!"; spalte2=""
1923	fi
1924	printf "\| $spalte1$spalte2 \| \n"
1925	if [[ -n $numprocs ]]
1926	then
1927	spalte1="number of PEs:"; spalte2=$numprocs
1928	printf "\| $spalte1$spalte2 \| \n"
1929	fi
1930	if [[ -n $tasks_per_node ]]
1931	then
1932	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
1933	printf "\| $spalte1$spalte2 \| \n"
1934	fi
1935	if [[ $threads_per_task != 1 ]]
1936	then
1937	spalte1="threads per task:"; spalte2="$threads_per_task"
1938	printf "\| $spalte1$spalte2 \| \n"
1939	fi
1940	printf "\| \| \n"
1941	if [[ $do_compile = true ]]
1942	then
1943	spalte1=cpp-directives:; spalte2=$cpp_options
1944	printf "\| $spalte1$spalte2 \| \n"
1945	zeile=$(echo "$cpp_options" \| cut -c41-)
1946	while [[ "$zeile" != "" ]]
1947	do
1948	spalte1=""
1949	spalte2=$zeile
1950	printf "\| $spalte1$spalte2 \| \n"
1951	zeile=$(echo "$zeile" \| cut -c41-)
1952	done
1953
1954	spalte1=compiler-options:; spalte2="$fopts"
1955	printf "\| $spalte1$spalte2 \| \n"
1956	zeile=$(echo "$fopts" \| cut -c41-)
1957	while [[ "$zeile" != "" ]]
1958	do
1959	spalte1=""
1960	spalte2=$zeile
1961	printf "\| $spalte1$spalte2 \| \n"
1962	zeile=$(echo "$zeile" \| cut -c41-)
1963	done
1964
1965	spalte1=linker-options:; spalte2=$lopts
1966	printf "\| $spalte1$spalte2 \| \n"
1967	zeile=$(echo "$lopts" \| cut -c41-)
1968	while [[ "$zeile" != "" ]]
1969	do
1970	spalte1=""
1971	spalte2=$zeile
1972	printf "\| $spalte1$spalte2 \| \n"
1973	zeile=$(echo "$zeile" \| cut -c41-)
1974	done
1975
1976	spalte1="main program":; spalte2=$mainprog
1977	printf "\| $spalte1$spalte2 \| \n"
1978	else
1979	spalte1=executable:; spalte2=$executable
1980	printf "\| $spalte1$spalte2 \| \n"
1981	fi
1982	printf "\| \| \n"
1983	spalte1="base name of files":; spalte2=$fname
1984	printf "\| $spalte1$spalte2 \| \n"
1985	if [[ $fname != $afname ]]
1986	then
1987	spalte1="base name of input files":; spalte2=$afname
1988	printf "\| $spalte1$spalte2 \| \n"
1989	fi
1990	spalte1="INPUT control list":; spalte2=$input_list
1991	printf "\| $spalte1$spalte2 \| \n"
1992	spalte1="OUTPUT control list":; spalte2=$output_list
1993	printf "\| $spalte1$spalte2 \| \n"
1994
1995	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
1996	then
1997	spalte1="memory demand / PE":; spalte2="$memory MB"
1998	printf "\| $spalte1$spalte2 \| \n"
1999	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2000	printf "\| $spalte1$spalte2 \| \n"
2001	fi
2002
2003	if [[ $do_compile = true ]]
2004	then
2005	printf "\| \| \n"
2006	printf "\| Files to be compiled: \| \n"
2007	zeile=$source_list
2008	while [[ "$zeile" != "" ]]
2009	do
2010	spalte3=$zeile
2011	printf "\| $spalte3 \| \n"
2012	zeile=$(echo "$zeile" \| cut -c61-)
2013	done
2014	fi
2015	printf "#--------------------------------------------------------------#"
2016
2017
2018
2019	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2020	if [[ $do_trace = true ]]
2021	then
2022	(( i = 0 ))
2023	while (( i < iin ))
2024	do
2025	(( i = i + 1 ))
2026	if (( i == 1 ))
2027	then
2028	printf "\n\n >>> INPUT-file assignments:\n"
2029	fi
2030	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2031	done
2032	(( i = 0 ))
2033	while (( i < iout ))
2034	do
2035	(( i = i + 1 ))
2036	if (( i == 1 ))
2037	then
2038	printf "\n\n >>> OUTPUT-file assignments:\n"
2039	fi
2040	printf "\n ${localout[$i]} : ${pathout[$i]}"
2041	done
2042	(( i = 0 ))
2043	while (( i < iic ))
2044	do
2045	(( i = i + 1 ))
2046	if (( i == 1 ))
2047	then
2048	printf "\n\n >>> INPUT-commands:\n"
2049	fi
2050	printf "\n ${in_command[$i]}"
2051	done
2052	(( i = 0 ))
2053	while (( i < ioc ))
2054	do
2055	(( i = i + 1 ))
2056	if (( i == 1 ))
2057	then
2058	printf "\n\n >>> OUTPUT-commands:\n"
2059	fi
2060	printf "\n ${out_command[$i]}"
2061	done
2062	fi
2063
2064
2065	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2066	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2067	then
2068	antwort=dummy
2069	printf "\n\n"
2070	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2071	do
2072	printf " >>> everything o.k. (y/n) ? "
2073	read antwort
2074	done
2075	if [[ $antwort = n \|\| $antwort = N ]]
2076	then
2077	locat=user_abort; (( iec = 0 )); exit
2078	fi
2079	if [[ $do_batch = true ]]
2080	then
2081	printf " >>> batch-job will be created and submitted"
2082	else
2083	if [[ $local_compile = false ]]
2084	then
2085	printf " >>> MRUN will now continue to execute on this machine"
2086	else
2087	printf " >>> a test compilation will now be carried out on this machine"
2088	fi
2089	fi
2090	fi
2091
2092
2093
2094
2095	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2096	# CHENDE AKTIONEN DURCHGEFUEHRT
2097	if [[ $do_batch = false ]]
2098	then
2099
2100
2101	# TEMPORAEREN KATALOG ERZEUGEN
2102	mkdir -p $TEMPDIR
2103	chmod go+rx $TEMPDIR
2104	tmpcreate=true
2105
2106
2107	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2108	# TEMPORAERES VERZEICHNIS KOPIEREN
2109	if [[ $do_compile = true ]]
2110	then
2111
2112	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2113	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2114	if [[ $localhost = nech ]]
2115	then
2116	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2117	if mkdir -p $TEMPDIR_COMPILE
2118	then
2119	printf "\n *** \"$TEMPDIR_COMPILE\" "
2120	printf "\n is generated as temporary directory for cross compiling\n"
2121	else
2122	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2123	printf "\n needed for cross compilation failed"
2124	locat=compile
2125	exit
2126	fi
2127	else
2128	TEMPDIR_COMPILE=$TEMPDIR
2129	fi
2130
2131
2132	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2133	line=""
2134	grep "%depository_path" $config_file > tmp_mrun
2135	while read line
2136	do
2137	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2138	then
2139	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2140	then
2141	global_depository_path=`echo $line \| cut -d" " -s -f2`
2142	fi
2143	fi
2144	done < tmp_mrun
2145
2146	line=""
2147	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2148	while read line
2149	do
2150	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2151	then
2152	local_depository_path=`echo $line \| cut -d" " -s -f2`
2153	fi
2154	done < tmp_mrun
2155
2156	if [[ "$local_depository_path" = "" ]]
2157	then
2158	if [[ "$global_depository_path" != "" ]]
2159	then
2160	local_depository_path=$global_depository_path
2161	else
2162	printf "\n\n +++ no depository path found in configuration file"
2163	printf "\n for local host \"$localhost\" "
2164	printf "\n please set \"\%depository_path\" in configuration file\n"
2165	locat=config_file; exit
2166	fi
2167	fi
2168	eval local_depository_path=$local_depository_path
2169
2170	basename=`print $mainprog \| cut -f1 -d"."`
2171	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2172	if [[ ! -f $make_depository ]]
2173	then
2174	printf "\n"
2175	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2176	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2177	else
2178	cp $make_depository $TEMPDIR_COMPILE
2179	cd $TEMPDIR_COMPILE
2180	tar -xf $make_depository > /dev/null 2>&1
2181	cd - > /dev/null
2182	fi
2183
2184	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2185
2186	# FALLS USER-INTERFACE VORHANDEN UND AUF DATEI MIT ANDEREM NAMEN
2187	# ALS user_interface.f90 LIEGT, DIESEN GEAENDERTEN NAMEN INS
2188	# MAKEFILE EINTRAGEN
2189	cd $TEMPDIR_COMPILE
2190	interface_file=`grep -l "END SUBROUTINE user_parin" $source_list`
2191	if [[ "$interface_file" != "" ]]
2192	then
2193	interface_file=`echo $interface_file \| cut -d"." -f1`
2194	mv Makefile Makefile_old
2195	sed "s/user_interface/$interface_file/g" Makefile_old > Makefile
2196	fi
2197	cd - > /dev/null
2198	else
2199	cp $executable ${TEMPDIR}/a.out
2200	fi
2201
2202
2203	# WECHSEL IN TEMPORAEREN KATALOG
2204	cd $TEMPDIR
2205	printf "\n *** changed to temporary directory: $TEMPDIR"
2206
2207
2208	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2209	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2210	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2211	# ERMITTELN
2212	(( i = 0 ))
2213	while (( i < iout ))
2214	do
2215	(( i = i + 1 ))
2216	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2217	then
2218	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2219	else
2220	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2221	fi
2222	done
2223
2224
2225	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2226	if [[ $do_compile = true ]]
2227	then
2228
2229
2230	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2231	printf "\n\n\n *** compilation starts \n$striche\n"
2232	printf " *** compilation with make using following options:\n"
2233	printf " compilername: $compiler_name\n"
2234	printf " options: $fopts\n"
2235	printf " preprocessor-directives: $cpp_options \n"
2236	printf " linker-options: $lopts \n"
2237	printf " source code files: $source_list \n"
2238
2239	if [[ $localhost = nech ]]
2240	then
2241	ssh 136.172.44.192 -l $usern ". /SX/opt/etc/initsx.sh; cd \$HOME/work/${usern}.$kennung; sxmake -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2242	cp $TEMPDIR_COMPILE/a.out .
2243	[[ $? != 0 ]] && compile_error=true
2244	rm -rf $TEMPDIR_COMPILE
2245	else
2246	[[ $localhost = lctit ]] && export LM_LICENSE_FILE=27050@tggls
2247	make -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2248	fi
2249
2250	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2251	then
2252	printf "\n +++ error occured while compiling or linking"
2253	locat=compile
2254
2255	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
2256	if [[ $localhost != lcsgib && $localhost != lcsgih ]]
2257	then
2258	exit
2259	else
2260	locat=normal
2261	fi
2262	else
2263	printf "$striche\n *** compilation finished \n"
2264	fi
2265	fi
2266
2267
2268	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2269	if [[ $local_compile = true ]]
2270	then
2271	cd $HOME
2272	rm -rf $TEMPDIR
2273	locat=local_compile; exit
2274	fi
2275
2276
2277	# BEREITSTELLEN DER INPUT-DATEIEN
2278	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2279	(( i = 0 ))
2280	while (( i < iin ))
2281	do
2282	(( i = i + 1 ))
2283	if (( i == 1 ))
2284	then
2285	printf "\n\n *** providing INPUT-files:\n$striche"
2286	fi
2287
2288
2289	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2290	if [[ "${transin[$i]}" = unavailable ]]
2291	then
2292	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2293	then
2294	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2295	printf "\n is not available!"
2296	else
2297	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2298	printf "\n is not available!"
2299	fi
2300	continue
2301	fi
2302
2303	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2304	files_for_pes=false; datentyp=file
2305	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2306	then
2307	files_for_pes=true; datentyp=directory
2308	actionin[$i]=""
2309	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2310	then
2311	actionin[$i]=""
2312	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2313	then
2314	files_for_pes=true; datentyp=directory
2315	actionin[$i]="ar"
2316	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2317	then
2318	actionin[$i]="ar"
2319	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2320	then
2321	files_for_pes=true; datentyp=directory
2322	actionin[$i]="fl"
2323	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2324	then
2325	actionin[$i]="fl"
2326	fi
2327
2328	if [[ $files_for_pes = true ]]
2329	then
2330	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
2331	else
2332	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
2333	fi
2334
2335	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
2336	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
2337	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
2338	# SERVER ZU HOLEN
2339	if [[ "${actionin[$i]}" = fl ]]
2340	then
2341	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
2342	if [[ $files_for_pes = false ]]
2343	then
2344	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
2345	then
2346	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
2347	got_tmp[$i]=true
2348	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2349	then
2350	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2351	printf "\n *** trying to use backup copy in \"$WORK\" "
2352	cp $WORK/${frelin[$i]} ${localin[$i]}
2353	else
2354	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2355	printf "\n or \"$tmp_data_catalog\" does not exist!"
2356	printf "\n *** trying to get copy from archive"
2357	actionin[$i]=ar
2358	fi
2359	else
2360	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
2361	then
2362	mkdir ${localin[$i]}
2363	cd $tmp_data_catalog/${frelin[$i]}
2364	for file in $(ls *)
2365	do
2366	ln $file $TEMPDIR/${localin[$i]}
2367	done
2368	cd $TEMPDIR
2369	got_tmp[$i]=true
2370	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2371	then
2372	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2373	printf "\n *** trying to use backup copy in \"$WORK\" "
2374	cp -r $WORK/${frelin[$i]} ${localin[$i]}
2375	else
2376	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2377	printf "\n or \"$tmp_data_catalog\" does not exist!"
2378	printf "\n *** trying to get copy from archive"
2379	actionin[$i]=ar
2380	fi
2381	fi
2382	fi
2383
2384
2385	# DATEI LIEGT AUF ARCHIV-SERVER
2386	if [[ "${actionin[$i]}" = ar ]]
2387	then
2388
2389	if [[ $files_for_pes = false ]]
2390	then
2391	printf "\n file will be restored from archive-system ($archive_system)!"
2392	else
2393	printf "\n directory will be restored from archive-system ($archive_system)!"
2394	fi
2395
2396	file_restored=false
2397
2398	if [[ $archive_system = asterix ]]
2399	then
2400	do_stagein=true
2401	(( stagein_anz = 0 ))
2402	while [[ $do_stagein = true ]]
2403	do
2404	if [[ $files_for_pes = false ]]
2405	then
2406	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
2407	else
2408	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
2409	fi
2410	cat STAGEIN_OUTPUT
2411	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
2412	then
2413	file_restored=true
2414	do_stagein=false
2415	else
2416	(( stagein_anz = stagein_anz + 1 ))
2417	if (( stagein_anz == 10 ))
2418	then
2419	printf "\n +++ stagein stoped after 10 tries"
2420	locat=stage
2421	exit
2422	fi
2423	printf "\n +++ restoring from archive failed, trying again:"
2424	sleep 900
2425	fi
2426	done
2427	elif [[ $archive_system = DMF ]]
2428	then
2429	if [[ $files_for_pes = false ]]
2430	then
2431	printf "\n +++ restoring of single files impossible with $archive_system !\n"
2432	locat=DMF
2433	exit
2434	else
2435	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
2436	cp -r $ARCHIVE/${frelin[$i]} $PWD
2437	file_restored=true
2438	fi
2439	elif [[ $archive_system = tivoli ]]
2440	then
2441	if [[ $files_for_pes = false ]]
2442	then
2443	if [[ $localhost = ibmh ]]
2444	then
2445	ssh $usern@hdata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2446	else
2447	ssh $usern@bdata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2448	fi
2449	else
2450	(( inode = 0 ))
2451	while (( inode < nodes ))
2452	do
2453	if [[ $localhost = ibmh ]]
2454	then
2455	ssh $usern@hdata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2456	else
2457	ssh $usern@bdata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2458	fi
2459	(( inode = inode + 1 ))
2460	done
2461	fi
2462	file_restored=true
2463	elif [[ $archive_system = ut ]]
2464	then
2465	if [[ $files_for_pes = false ]]
2466	then
2467	cp $UT/${frelin[$i]} .
2468	else
2469	(( inode = 0 ))
2470	while (( inode < nodes ))
2471	do
2472	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
2473	(( inode = inode + 1 ))
2474	done
2475	fi
2476	file_restored=true
2477	else
2478	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
2479	locat=rearchive
2480	exit
2481	fi
2482
2483	if [[ $file_restored = true ]]
2484	then
2485
2486	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
2487	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
2488	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
2489	if [[ $files_for_pes = false ]]
2490	then
2491	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
2492	else
2493	mkdir $tmp_data_catalog/${frelin[$i]}
2494	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
2495	fi
2496	got_tmp[$i]=true
2497
2498	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
2499	mv ${frelin[$i]} ${localin[$i]}
2500
2501	fi
2502	fi
2503
2504
2505	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
2506	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
2507	then
2508
2509	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
2510	then
2511
2512	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
2513	printf "\n file will be provided for $numprocs processors"
2514	mkdir ${localin[$i]}
2515	ival=$numprocs
2516	(( ii = 0 ))
2517	while (( ii <= ival-1 ))
2518	do
2519	if (( ii < 10 ))
2520	then
2521	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
2522	elif (( ii < 100 ))
2523	then
2524	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
2525	elif (( ii < 1000 ))
2526	then
2527	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
2528	else
2529	cp ${absnamein[$i]} ${localin[$i]}/_$ii
2530	fi
2531	(( ii = ii + 1 ))
2532	done
2533
2534	else
2535
2536	if [[ $files_for_pes = true ]]
2537	then
2538
2539	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
2540	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
2541	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
2542	# PER MOVE UMBENANNT WERDEN
2543	printf "\n providing $numprocs files for the respective processors"
2544	mkdir ${localin[$i]}
2545	if [[ $link_local_input = true ]]
2546	then
2547	printf " using ln -f\n"
2548	cd ${absnamein[$i]}
2549	for file in $(ls *)
2550	do
2551	ln -f $file ${localin[$i]}
2552	done
2553	cd $TEMPDIR
2554	fi
2555	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
2556	if [[ ! -f "${localin[$i]}/_0000" ]]
2557	then
2558	if [[ $link_local_input = true ]]
2559	then
2560	printf " ln failed for .../_0000, using cp...\n"
2561	fi
2562	cp -r ${absnamein[$i]}/* ${localin[$i]}
2563	fi
2564
2565	else
2566	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
2567	if [[ $link_local_input = true ]]
2568	then
2569	printf " using ln -f\n"
2570	ln -f ${absnamein[$i]} ${localin[$i]}
2571	fi
2572	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
2573	if [[ ! -f "${localin[$i]}" ]]
2574	then
2575	if [[ $link_local_input = true ]]
2576	then
2577	printf " ln failed, using cp...\n"
2578	fi
2579	cp ${absnamein[$i]} ${localin[$i]}
2580	fi
2581	fi
2582	fi
2583	fi
2584
2585	done
2586	if (( i != 0 ))
2587	then
2588	printf "\n$striche\n *** all INPUT-files provided \n"
2589	fi
2590
2591
2592	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
2593	# LESEN VON PALM)
2594	cat > ENVPAR << %%END%%
2595	&envpar run_identifier = '$fname', host = '$localhost',
2596	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2597	maximum_cpu_time_allowed = ${cpumax}.,
2598	revision = '$global_revision' /
2599
2600	%%END%%
2601
2602
2603	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
2604	(( i = 0 ))
2605	while (( i < iic ))
2606	do
2607	(( i = i + 1 ))
2608	if (( i == 1 ))
2609	then
2610	printf "\n\n *** execution of INPUT-commands:\n$striche"
2611	fi
2612	printf "\n >>> ${in_command[$i]}"
2613	eval ${in_command[$i]}
2614	if (( i == iic ))
2615	then
2616	printf "\n$striche\n"
2617	fi
2618	done
2619
2620
2621	# VERBLEIBENDE CPU-ZEIT BERECHNEN
2622	cpurest=${cpumax}.
2623
2624
2625	# PROGRAMMSTART
2626	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
2627	PATH=$PATH:$TEMPDIR
2628
2629	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
2630	then
2631	if [[ "$ENVIRONMENT" = BATCH ]]
2632	then
2633	printf "\n +++ debug is allowed in interactive mode only"
2634	locat=debug
2635	exit
2636	fi
2637	if [[ $localhost = decalpha ]]
2638	then
2639	dxladebug a.out
2640	elif [[ $localhost = ibmb \|\| $localhost = ibmh ]]
2641	then
2642
2643	# SETUP THE IBM MPI ENVIRONMENT
2644	export MP_SHARED_MEMORY=yes
2645	export AIXTHREADS_SCOPE=S
2646	export OMP_NUM_THREADS=$threads_per_task
2647	export AUTHSTATE=files
2648	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
2649
2650	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
2651	export MP_ADAPTER_USE=shared
2652	export MP_CPU_USE=multiple
2653	export MP_TIMEOUT=1200
2654
2655	unset MP_TASK_AFFINITY
2656
2657	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
2658	#(( ii = 1 ))
2659	#while (( ii <= $numprocs ))
2660	#do
2661	# echo $localhost_realname >> hostfile
2662	# (( ii = ii + 1 ))
2663	#done
2664	#export MP_HOSTFILE=hostfile
2665
2666	if [[ "$LOADLBATCH" = yes ]]
2667	then
2668	totalview poe a.out $ROPTS
2669	else
2670	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
2671	export TVDSVRLAUNCHCMD=ssh
2672	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
2673	fi
2674	else
2675	printf "\n +++ no debug available on \"$localhost\" "
2676	printf "\n or not implemented in mrun so far"
2677	locat=debug
2678	exit
2679	fi
2680	else
2681	if [[ -n $numprocs ]]
2682	then
2683
2684	# RUNNING THE PROGRAM ON PARALLEL MACHINES
2685	if [[ $(echo $host \| cut -c1-3) = ibm ]]
2686	then
2687	# SETUP THE IBM MPI ENVIRONMENT
2688	export MP_SHARED_MEMORY=yes
2689	export AIXTHREAD_SCOPE=S
2690	export OMP_NUM_THREADS=$threads_per_task
2691	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
2692	export AUTHSTATE=files
2693	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
2694	# export MP_PRINTENV=yes
2695
2696	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
2697	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
2698	export MP_WAIT_MODE=poll
2699	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
2700	# export MP_EAGER_LIMIT=65535
2701
2702	# # TESTWEISE FUER TURBOMPI (JAN 05)
2703	# export MPJ_MTAB=128
2704	# export MPJ_ALLTOALL=1
2705	# export MPJ_ALLTOALLV=1
2706
2707	if [[ "$LOADLBATCH" = yes ]]
2708	then
2709	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
2710	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
2711	then
2712	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
2713	else
2714	poe ./a.out $ROPTS
2715	fi
2716	else
2717	if [[ $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms ]]
2718	then
2719	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
2720	elif [[ $localhost = ibmy ]]
2721	then
2722	if [[ -f $hostfile ]]
2723	then
2724	cp $hostfile hostfile
2725	else
2726	(( ii = 1 ))
2727	while (( ii <= $numprocs ))
2728	do
2729	echo $localhost_realname >> hostfile
2730	(( ii = ii + 1 ))
2731	done
2732	fi
2733	export MP_HOSTFILE=hostfile
2734	./a.out -procs $tasks_per_node $ROPTS
2735	else
2736	if [[ "$host_file" = "" ]]
2737	then
2738	printf "\n +++ no hostfile given in configuration file"
2739	locat=config_file
2740	exit
2741	else
2742	eval host_file=$host_file
2743	fi
2744	export MP_HOSTFILE=$host_file
2745	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
2746	fi
2747	fi
2748	elif [[ $host = nech \|\| $host = neck ]]
2749	then
2750	(( ii = nodes ))
2751	if [[ $ii = 1 ]]
2752	then
2753	export F_ERRCNT=0 # acceptable number of errors before program is stopped
2754	export MPIPROGINF=YES
2755	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
2756	echo "*** execution on single node with mpirun"
2757	mpirun -np $numprocs ./a.out $ROPTS
2758	else
2759	(( i = 0 ))
2760	while (( i < ii ))
2761	do
2762	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
2763	(( i = i + 1 ))
2764	done
2765
2766	echo "#!/bin/sh" > mpi_exec_shell
2767	echo " " >> mpi_exec_shell
2768	echo "set -u" >> mpi_exec_shell
2769	echo "F_ERRCNT=0" >> mpi_exec_shell
2770	echo "MPIPROGINV=YES" >> mpi_exec_shell
2771	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
2772	echo "cpurest=$cpurest" >> mpi_exec_shell
2773	echo "fname=$fname" >> mpi_exec_shell
2774	echo "localhost=$localhost" >> mpi_exec_shell
2775	echo "return_addres=$return_addres" >> mpi_exec_shell
2776	echo "return_username=$return_username" >> mpi_exec_shell
2777	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
2778	echo "write_binary=$write_binary" >> mpi_exec_shell
2779	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
2780	echo " " >> mpi_exec_shell
2781	echo "export F_ERRCNT" >> mpi_exec_shell
2782	echo "export MPIPROGINV" >> mpi_exec_shell
2783	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
2784	echo "export cpurest" >> mpi_exec_shell
2785	echo "export fname" >> mpi_exec_shell
2786	echo "export localhost" >> mpi_exec_shell
2787	echo "export return_addres" >> mpi_exec_shell
2788	echo "export return_username" >> mpi_exec_shell
2789	echo "export tasks_per_node" >> mpi_exec_shell
2790	echo "export write_binary" >> mpi_exec_shell
2791	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
2792	echo " " >> mpi_exec_shell
2793	echo "exec ./a.out" >> mpi_exec_shell
2794
2795	chmod u+x mpi_exec_shell
2796	export MPIPROGINF=YES
2797	mpirun -f multinode_config &
2798	wait
2799
2800	fi
2801	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lctit ]]
2802	then
2803
2804	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
2805	# DOES NOT EXIST
2806	if [[ $host != lcsgih && $host != lcsgib ]]
2807	then
2808	if [[ -f $hostfile ]]
2809	then
2810	cp $hostfile hostfile
2811	else
2812	(( ii = 1 ))
2813	while (( ii <= $numprocs / $threads_per_task ))
2814	do
2815	echo $localhost_realname >> hostfile
2816	(( ii = ii + 1 ))
2817	done
2818	fi
2819	eval zeile=\"`head -n $ii hostfile`\"
2820	printf "\n *** running on: $zeile"
2821	fi
2822
2823	(( ii = $numprocs / $threads_per_task ))
2824	export OMP_NUM_THREADS=$threads_per_task
2825	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
2826	if [[ $threads_per_task != 1 ]]
2827	then
2828	printf "\n threads per task: $threads_per_task"
2829	fi
2830	if [[ $run_coupled_model = false ]]
2831	then
2832	printf "\n\n"
2833	if [[ $host = lcsgih \|\| $host = lcsgib ]]
2834	then
2835	# mpirun -machinefile $PBS_NODEFILE -np $ii a.out $ROPTS
2836	ulimit -s 30000
2837	ulimit -a
2838	# mpirun_rsh -hostfile $PBS_NODEFILE -np $ii OMP_NUM_THREADS=$OMP_NUM_THREADS palm $ROPTS
2839	export MV2_NUM_PORTS=2
2840	# export MV2_CPU_MAPPING=0:1:2:3
2841	mpiexec ./palm $ROPTS
2842	elif [[ $host = lcxt4 ]]
2843	then
2844	aprun -n $ii -N $tasks_per_node a.out $ROPTS
2845	else
2846	echo "no_coupling" > runfile_atmos
2847	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
2848	fi
2849	else
2850	(( iii = ii / 2 ))
2851	echo "atmosphere_to_ocean" > runfile_atmos
2852	echo "ocean_to_atmosphere" > runfile_ocean
2853
2854	printf "\n coupled run ($iii atmosphere, $iii ocean)"
2855	printf "\n\n"
2856
2857	if [[ $host = lcxt4 ]]
2858	then
2859	aprun -n $iii -N $tasks_per_node a.out < runfile_atmos $ROPTS &
2860	aprun -n $iii -N $tasks_per_node a.out < runfile_ocean $ROPTS &
2861	else
2862
2863	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
2864	mpiexec -machinefile hostfile -n $iii a.out $ROPTS < runfile_atmos &
2865	mpiexec -machinefile hostfile -n $iii a.out $ROPTS < runfile_ocean &
2866	# mpiexec -machinefile hostfile -n $iii -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
2867	# mpiexec -machinefile hostfile -n $iii -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
2868	fi
2869	wait
2870	fi
2871
2872	# if [[ $scirocco = true ]]
2873	# then
2874	# mpiexec -machinefile hostfile -n $ii a.out $ROPTS
2875	# else
2876	# mpirun -machinefile hostfile -np $ii a.out $ROPTS
2877	# fi
2878
2879	elif [[ $host = decalpha ]]
2880	then
2881	dmpirun -np $numprocs a.out $ROPTS
2882	elif [[ $host = lctit ]]
2883	then
2884	export runfile=runfile.$kennung
2885
2886	echo "cd $PWD" > $runfile
2887	echo "export OMP_NUM_THREADS=$OMP_NUM_THREADS" >> $runfile
2888	echo "export cpurest=$cpurest" >> $runfile
2889	echo "export fname=$fname" >> $runfile
2890	echo "export localhost=$localhost" >> $runfile
2891	echo "export return_addres=$return_addres" >> $runfile
2892	echo "export return_username=$return_username" >> $runfile
2893	echo "export tasks_per_node=$tasks_per_node" >> $runfile
2894	echo "export write_binary=$write_binary" >> $runfile
2895	echo "export use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> $runfile
2896	echo "./a.out" >> $runfile
2897	chmod u+x $runfile
2898
2899	if [[ "$QUEUE" = interactive ]]
2900	then
2901	mpirun -np $numprocs a.out $ROPTS
2902	else
2903	(( mem_tsubame = $memory / 1024.0 ))
2904	echo "Memory for Tsubame for each process in GB:", $mem_tsubame
2905	# n1ge -fore -g 1S060156 -mpi $numprocs -mem 4 -N palm -q $queue a.out $ROPTS
2906	/n1ge/TITECH_GRID/tools/bin/n1ge -fore -g $group_number -mpi ${numprocs}:$tasks_per_node -mem $mem_tsubame -N palm -rt $minuten -q $queue a.out $ROPTS
2907	fi
2908
2909	rm $runfile
2910	else
2911	mpprun -n $numprocs a.out $ROPTS
2912	fi
2913	[[ $? != 0 ]] && execution_error=true
2914
2915
2916	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
2917	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
2918	then
2919	apprentice
2920	fi
2921	else
2922	a.out $ROPTS
2923	fi
2924	fi
2925	if [[ $? != 0 \|\| $execution_error = true ]]
2926	then
2927
2928	# ABBRUCH BEI LAUFZEITFEHLER
2929	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
2930	printf "\n +++ runtime error occured"
2931	locat=execution
2932	exit
2933	else
2934	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
2935	printf "\n$striche\n *** execution finished \n"
2936	fi
2937
2938
2939
2940	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
2941	(( i = 0 ))
2942	while (( i < ioc ))
2943	do
2944	(( i = i + 1 ))
2945	if (( i == 1 ))
2946	then
2947	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
2948	fi
2949	printf "\n >>> ${out_command[$i]}"
2950	eval ${out_command[$i]}
2951	if (( i == ioc ))
2952	then
2953	printf "\n$striche\n"
2954	fi
2955	done
2956
2957
2958	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
2959	if [[ $do_trace = true ]]
2960	then
2961	printf "\n\n"
2962	ls -al
2963	fi
2964
2965
2966
2967	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
2968	(( i = 0 ))
2969	while (( i < iout ))
2970	do
2971	(( i = i + 1 ))
2972	if (( i == 1 ))
2973	then
2974	printf "\n\n *** saving OUTPUT-files:\n$striche"
2975	fi
2976
2977	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2978	files_for_pes=false; filetyp=file
2979	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
2980	then
2981	files_for_pes=true; filetyp=directory
2982	actionout[$i]=""
2983	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
2984	then
2985	actionout[$i]=""
2986	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
2987	then
2988	files_for_pes=true; filetyp=directory
2989	actionout[$i]="ar"
2990	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
2991	then
2992	actionout[$i]="ar"
2993	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
2994	then
2995	files_for_pes=true; filetyp=directory
2996	actionout[$i]="fl"
2997	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
2998	then
2999	actionout[$i]="fl"
3000	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
3001	then
3002	files_for_pes=true; filetyp=directory
3003	actionout[$i]="tr"
3004	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
3005	then
3006	actionout[$i]="tr"
3007	fi
3008
3009	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
3010	then
3011	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
3012	elif [[ ! -f ${localout[$i]}/_0000 && $files_for_pes = true ]]
3013	then
3014	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
3015	else
3016
3017
3018	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3019	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3020	# REMOTE-RECHNUNGEN
3021	if [[ "${actionout[$i]}" = tr ]]
3022	then
3023	if [[ $localhost != $fromhost ]]
3024	then
3025	if [[ $files_for_pes = false ]]
3026	then
3027	cps=""
3028	cst=""
3029	else
3030	cps=-c
3031	cst="/"
3032	fi
3033	if [[ $localhost = ibmh \|\| $localhost = ibmb \|\| $localhost = nech ]]
3034	then
3035
3036	# TRANSFER IN EIGENSTAENDIGEM JOB
3037	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3038	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3039	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3040	if [[ $files_for_pes = false ]]
3041	then
3042	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3043	else
3044	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
3045	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
3046	fi
3047
3048	echo "set -x" > transfer_${localout[$i]}
3049	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3050
3051	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
3052	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
3053	printf "\n or higher cycle\n"
3054	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3055
3056	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3057
3058	if [[ $localhost = nech ]]
3059	then
3060	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3061	else
3062	if [[ "$LOGNAME" = b323013 ]]
3063	then
3064	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3065	else
3066	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3067	fi
3068	fi
3069
3070	else
3071
3072	# TRANSFER INNERHALB DIESES JOBS
3073	transfer_failed=false
3074	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
3075	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
3076	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3077	[[ $? != 0 ]] && transfer_failed=true
3078
3079	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3080	# LOKALER MASCHINE ANLEGEN
3081	if [[ $transfer_failed = true ]]
3082	then
3083	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3084	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3085
3086	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3087	# ANLEGEN.
3088	eval local_catalog=${pathout[$i]}
3089	if [[ ! -d $local_catalog ]]
3090	then
3091	printf " *** local directory does not exist. Trying to create:\n"
3092	printf " $local_catalog \n"
3093	mkdir -p $local_catalog
3094	fi
3095	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3096	transfer_problems=true
3097	fi
3098	fi
3099	else
3100
3101	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
3102	actionout[$i]=""
3103	fi
3104	fi
3105
3106
3107	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3108	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3109	# REMOTE-RECHNUNGEN
3110	if [[ "${actionout[$i]}" = tra ]]
3111	then
3112	if [[ $localhost != $fromhost ]]
3113	then
3114	if [[ $localhost = ibmh \|\| $localhost = ibmb \|\| $localhost = nech ]]
3115	then
3116
3117	# TRANSFER IN EIGENSTAENDIGEM JOB
3118	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3119	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3120	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3121	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3122
3123	echo "set -x" > transfer_${localout[$i]}
3124	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3125
3126	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
3127	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
3128	printf "\n or higher cycle\n"
3129	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3130
3131	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3132
3133	if [[ $localhost = nech ]]
3134	then
3135	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3136	else
3137	if [[ $LOGNAME = b323013 ]]
3138	then
3139	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3140	else
3141	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3142	fi
3143	fi
3144
3145	else
3146
3147	# TRANSFER INNERHALB DIESES JOBS
3148	transfer_failed=false
3149	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
3150	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
3151	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3152	[[ $? != 0 ]] && transfer_failed=true
3153
3154	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3155	# LOKALER MASCHINE ANLEGEN
3156	if [[ $transfer_failed = true ]]
3157	then
3158	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3159	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3160
3161	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3162	# ANLEGEN
3163	eval local_catalog=${pathout[$i]}
3164	if [[ ! -d $local_catalog ]]
3165	then
3166	printf " *** local directory does not exist. Trying to create:\n"
3167	printf " $local_catalog \n"
3168	mkdir -p $local_catalog
3169	fi
3170
3171	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3172	transfer_problems=true
3173	fi
3174	fi
3175	else
3176
3177	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
3178	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
3179	actionout[$i]=a
3180	fi
3181	fi
3182
3183
3184	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
3185	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
3186	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
3187	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
3188	if [[ "${actionout[$i]}" = fl ]]
3189	then
3190	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3191	chmod g+rx $tmp_data_catalog
3192	if [[ $files_for_pes = false ]]
3193	then
3194	printf "\n >>> OUTPUT: ${localout[$i]} to"
3195	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3196	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
3197	else
3198	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
3199	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3200	mkdir $tmp_data_catalog/${frelout[$i]}
3201	cd ${localout[$i]}
3202	for file in $(ls *)
3203	do
3204	ln -f $file $tmp_data_catalog/${frelout[$i]}
3205	done
3206	cd $TEMPDIR
3207	fi
3208
3209
3210	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
3211	if [[ $store_on_archive_system = true ]]
3212	then
3213
3214	if [[ $archive_system = asterix ]]
3215	then
3216	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3217	if [[ $files_for_pes = false ]]
3218	then
3219	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3220	else
3221	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3222	fi
3223	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3224	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
3225	echo "then" >> archive_${frelout[$i]}
3226	echo " do_stageout=false" >> archive_${frelout[$i]}
3227	echo "else" >> archive_${frelout[$i]}
3228	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
3229	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
3230	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
3231	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
3232	if [[ $files_for_pes = false ]]
3233	then
3234	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
3235	else
3236	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
3237	fi
3238	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
3239	echo "fi" >> archive_${frelout[$i]}
3240	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3241	elif [[ $archive_system = DMF ]]
3242	then
3243	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3244	if [[ $files_for_pes = false ]]
3245	then
3246	printf "\n +++ archiving of single files impossible with $archive_system !\n"
3247	locat=DMF
3248	exit
3249	else
3250	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
3251	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
3252	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
3253	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
3254	fi
3255	elif [[ $archive_system = tivoli ]]
3256	then
3257	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3258	if [[ $files_for_pes = false ]]
3259	then
3260	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3261	echo "set -x" >> archive_${frelout[$i]}
3262	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3263	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3264	else
3265
3266	echo "set -x" >> archive_${frelout[$i]}
3267	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
3268	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3269	cd $tmp_data_catalog
3270	all_files=`ls -1 ${frelout[$i]}/*`
3271	cd - > /dev/null
3272	(( inode = 0 ))
3273	(( tp1 = tasks_per_node + 1 ))
3274	while (( inode < nodes ))
3275	do
3276	# echo "*** all_files = \"$all_files\" "
3277	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3278	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3279	# echo "*** tasks_per_node = \"$tasks_per_node\" "
3280	# echo "*** files = \"$files\" "
3281	# echo "*** all_files = \"$all_files\" "
3282	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3283	echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3284	echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3285	(( inode = inode + 1 ))
3286	done
3287	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3288	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3289	fi
3290	elif [[ $archive_system = ut ]]
3291	then
3292	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3293	if [[ $files_for_pes = false ]]
3294	then
3295	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3296	echo "set -x" >> archive_${frelout[$i]}
3297	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3298	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3299	else
3300
3301	echo "set -x" >> archive_${frelout[$i]}
3302	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
3303	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
3304	cd $tmp_data_catalog
3305	all_files=`ls -1 ${frelout[$i]}/*`
3306	cd - > /dev/null
3307	(( inode = 0 ))
3308	(( tp1 = tasks_per_node + 1 ))
3309	while (( inode < nodes ))
3310	do
3311	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3312	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3313	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3314	(( inode = inode + 1 ))
3315	done
3316	fi
3317	elif [[ $archive_system = none ]]
3318	then
3319	printf " +++ archiving on $localhost not available!\n"
3320	fi
3321
3322	if [[ $archive_system != none ]]
3323	then
3324	if [[ $localhost = ibmh \|\| $localhost = ibmb ]]
3325	then
3326	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
3327	subjob -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
3328	elif [[ $localhost = nech ]]
3329	then
3330	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
3331	fi
3332	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3333	fi
3334	else
3335	printf " +++ caution: option -A is switched on. No archiving on $archive_system!\n"
3336	fi
3337
3338
3339	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
3340	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
3341	if [[ $files_for_pes = false ]]
3342	then
3343	cat /dev/null > ${pathout[$i]}
3344	else
3345	mkdir -p ${pathout[$i]}
3346	fi
3347
3348	fi
3349
3350
3351	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
3352	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
3353	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
3354	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
3355	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
3356	# GEMAESSEN ARCHIVIERUNGEN GESETZT
3357	if [[ "${actionout[$i]}" = ar ]]
3358	then
3359	if [[ $files_for_pes = false ]]
3360	then
3361	printf "\n >>> OUTPUT: ${localout[$i]} to"
3362	printf "\n ${pathout[$i]}"
3363	printf "\n File will be copied to archive-system ($archive_system) !\n"
3364	else
3365	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
3366	printf "\n ${pathout[$i]}"
3367	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
3368	fi
3369	mv ${localout[$i]} ${frelout[$i]}
3370
3371	file_saved=false
3372
3373	if [[ $archive_system = asterix ]]
3374	then
3375	do_stageout=true
3376	(( stageout_anz = 0 ))
3377	while [[ $do_stageout = true ]]
3378	do
3379	if [[ $files_for_pes = false ]]
3380	then
3381	stageout ${frelout[$i]} > STAGE_OUTPUT
3382	else
3383	stageout -t ${frelout[$i]} > STAGE_OUTPUT
3384	fi
3385	cat STAGE_OUTPUT
3386	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
3387	then
3388	file_saved=true
3389	do_stageout=false
3390	else
3391	if [[ $files_for_pes = false ]]
3392	then
3393	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
3394	else
3395	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
3396	fi
3397	(( stageout_anz = stageout_anz + 1 ))
3398	if (( stageout_anz == 10 ))
3399	then
3400	printf "\n +++ stoped after 10 unsuccessful tries!"
3401	archive_save=false
3402	do_stageout=false
3403	else
3404	printf "\n *** new try to store on archive after 15 min:"
3405	sleep 900
3406	fi
3407	fi
3408	done
3409	elif [[ $archive_system = DMF ]]
3410	then
3411	if [[ $files_for_pes = false ]]
3412	then
3413	printf "\n +++ archiving of single files impossible on $archive_system!\n"
3414	locat=DMF
3415	exit
3416	else
3417	rm -rf $ARCHIVE/${frelout[$i]}
3418	cp -r ${frelout[$i]} $ARCHIVE
3419	fi
3420	file_saved=true
3421	elif [[ $archive_system = tivoli ]]
3422	then
3423	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
3424	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
3425	# GELEGT WERDEN
3426	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3427	chmod g+rx $tmp_data_catalog
3428	if [[ $files_for_pes = false ]]
3429	then
3430	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
3431	else
3432	mkdir $tmp_data_catalog/${frelout[$i]}
3433	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
3434	fi
3435
3436	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
3437	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
3438	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
3439	if [[ $files_for_pes = false ]]
3440	then
3441	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3442	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3443	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3444	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3445	else
3446	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3447	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3448	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3449	fi
3450
3451	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
3452	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3453	file_saved=true
3454
3455	elif [[ $archive_system = ut ]]
3456	then
3457	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
3458	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
3459	# GELEGT WERDEN
3460	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3461	chmod g+rx $tmp_data_catalog
3462	if [[ $files_for_pes = false ]]
3463	then
3464	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
3465	else
3466	mkdir $tmp_data_catalog/${frelout[$i]}
3467	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
3468	fi
3469
3470	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
3471	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
3472	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
3473	if [[ $files_for_pes = false ]]
3474	then
3475	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3476	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3477	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3478	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3479	else
3480	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3481	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3482	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3483	fi
3484
3485	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
3486	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3487	file_saved=true
3488
3489	else
3490	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
3491	archive_save=false
3492	fi
3493	if [[ $file_saved = true ]]
3494	then
3495	if [[ $files_for_pes = false ]]
3496	then
3497	cat /dev/null > ${pathout[$i]}
3498	else
3499	mkdir -p ${pathout[$i]}
3500	fi
3501	fi
3502	fi
3503
3504	# APPEND AUF LOKALER MASCHINE
3505	if [[ "${actionout[$i]}" = "a" ]]
3506	then
3507	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
3508	cat ${localout[$i]} >> ${pathout[$i]}
3509	fi
3510
3511	# KOPIEREN AUF LOKALER MASCHINE
3512	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
3513	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
3514	then
3515
3516	# KOPIEREN AUF EINPROZESSORMASCHINE
3517	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
3518	then
3519	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
3520	if [[ $link_local_output = true ]]
3521	then
3522	printf " using ln -f\n"
3523	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
3524	fi
3525	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
3526	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
3527	then
3528	if [[ $link_local_output = true ]]
3529	then
3530	printf " ln failed, using cp...\n"
3531	fi
3532	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
3533	fi
3534	else
3535	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
3536	if [[ $link_local_output = true ]]
3537	then
3538	printf " using ln -f\n"
3539	ln -f ${localout[$i]} ${pathout[$i]}
3540	fi
3541	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
3542	if [[ ! -f "${pathout[$i]}" ]]
3543	then
3544	if [[ $link_local_output = true ]]
3545	then
3546	printf " ln failed, using cp...\n"
3547	fi
3548	cp ${localout[$i]} ${pathout[$i]}
3549	fi
3550	fi
3551
3552	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
3553	then
3554
3555	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
3556	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
3557	# WIRD DANN KOPIERT
3558	# PER MOVE UMBENANNT WERDEN
3559	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
3560	if [[ $link_local_output = true ]]
3561	then
3562	printf " using ln -f\n"
3563	mkdir ${pathout[$i]}
3564	cd ${localout[$i]}
3565	for file in $(ls *)
3566	do
3567	ln -f $file ${pathout[$i]}
3568	done
3569	cd $TEMPDIR
3570	fi
3571	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
3572	if [[ ! -f "${pathout[$i]}/_0000" ]]
3573	then
3574	if [[ $link_local_output = true ]]
3575	then
3576	printf " ln failed for .../_0000, using cp...\n"
3577	fi
3578	cp -r ${localout[$i]} ${pathout[$i]}
3579	fi
3580
3581	fi
3582	fi
3583	done
3584	if (( i != 0 ))
3585	then
3586	if [[ $transfer_problems = true ]]
3587	then
3588	printf "\n$striche\n *** OUTPUT-files saved"
3589	printf "\n +++ WARNING: some data transfers failed! \n"
3590	else
3591	printf "\n$striche\n *** all OUTPUT-files saved \n"
3592	fi
3593	fi
3594
3595
3596	# EVENTUELL FOLGEJOB STARTEN
3597	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
3598	if [[ -f CONTINUE_RUN ]]
3599	then
3600
3601	if [[ $archive_save = true ]]
3602	then
3603
3604	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
3605	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
3606	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
3607	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
3608	# HANDEN
3609	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
3610	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
3611	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
3612	if [[ $(echo $mc \| grep -c "#") != 0 ]]
3613	then
3614	mc=`echo $mc \| sed 's/#/f/g'`
3615	fi
3616
3617
3618	# JOB STARTEN
3619	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
3620	echo " $mc"
3621	printf "\n$striche\n"
3622	if [[ $localhost != $fromhost ]]
3623	then
3624
3625	if [[ $localhost = nech \|\| $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms \|\| $localhost = lctit ]]
3626	then
3627	echo "*** ssh will be used to initiate restart-runs!"
3628	echo " return_addres=\"$return_addres\" "
3629	echo " return_username=\"$return_username\" "
3630	if [[ $return_addres = 172.20.25.41 ]]
3631	then
3632	# WORKAROUND AUF SCIROCCO AM TIT
3633	print "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc " \| ssh $return_addres -l $return_username
3634	else
3635	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
3636	fi
3637	else
3638	printf "\n +++ no restart mechanism available for host \"$localhost\" "
3639	locat=restart; exit
3640	fi
3641
3642	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
3643	# DER AKTUELLE JOB ENDET
3644	sleep 30
3645
3646	else
3647
3648	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
3649	# RUFEN WERDEN, AUSSER AUF lcfimm
3650	cd $LOCAL_PWD
3651	if [[ $localhost = lcfimm ]]
3652	then
3653	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
3654	else
3655	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
3656	fi
3657	cd - > /dev/null
3658	fi
3659	printf "\n$striche\n *** restart-run initiated \n"
3660
3661
3662	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
3663	# GEHOLT WORDEN SIND, LOESCHEN
3664	(( i = 0 ))
3665	while (( i < iin ))
3666	do
3667	(( i = i + 1 ))
3668	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
3669	then
3670	rm -r $tmp_data_catalog/${frelin[$i]}
3671	fi
3672	done
3673
3674	else
3675
3676	printf "\n +++ no restart-run possible, since errors occured"
3677	printf "\n during the archive process"
3678	fi
3679
3680	fi
3681
3682
3683
3684	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
3685	if [[ "$email_notification" != "" ]]
3686	then
3687
3688	if [[ $localhost != $fromhost ]]
3689	then
3690	if [[ -f CONTINUE_RUN ]]
3691	then
3692	echo "PALM restart run necessary" > email_text
3693	echo "description header of actual run:" >> email_text
3694	cat CONTINUE_RUN >> email_text
3695	echo "mrun-command to restart:" >> email_text
3696	echo "$mc" >> email_text
3697	else
3698	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
3699	fi
3700	mail $email_notification < email_text
3701	printf "\n *** email notification sent to \"$email_notification\" "
3702	fi
3703	fi
3704
3705
3706
3707	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
3708	cd $HOME
3709	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
3710
3711	else
3712
3713
3714	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
3715	# CHENDE AKTIONEN DURCHGEFUEHRT
3716
3717	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
3718	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
3719	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
3720	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
3721	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
3722	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
3723	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
3724	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
3725	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
3726	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
3727	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
3728	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
3729	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
3730	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
3731	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
3732	if [[ $use_openmp = true ]]
3733	then
3734	mrun_com=${mrun_com}" -O"
3735	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $threads_per_task"
3736	else
3737	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
3738	fi
3739	[[ $store_on_archive_system = false ]] && mrun_com=${mrun_com}" -A"
3740	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
3741	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
3742	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
3743	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
3744	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y"
3745	if [[ $do_remote = true ]]
3746	then
3747	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
3748	fi
3749
3750
3751	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
3752	jobfile=jobfile.$RANDOM
3753
3754
3755	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
3756	echo "mkdir $TEMPDIR" >> $jobfile
3757	echo "cd $TEMPDIR" >> $jobfile
3758
3759
3760	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
3761	if [[ $do_trace = true ]]
3762	then
3763	echo "set -x" >> $jobfile
3764	else
3765	echo "set +vx" >> $jobfile
3766	fi
3767
3768
3769	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
3770	# SOWIE GEGEBENENFALLS DES MAKEFILES
3771	if [[ $do_compile = true ]]
3772	then
3773
3774	source_catalog=SOURCES_FOR_RUN_$fname
3775
3776	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
3777	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
3778	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
3779	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
3780	echo "export SOURCES_COMPLETE=true" >> $jobfile
3781	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
3782
3783	for filename in $source_list
3784	do
3785	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
3786	echo "cat > $filename << \"%END%\"" >> $jobfile
3787	cat $source_catalog/$filename >> $jobfile
3788	echo " " >> $jobfile
3789	echo "%END%" >> $jobfile
3790	echo " " >> $jobfile
3791	done
3792
3793	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
3794	echo "cat > Makefile << \"%END%\"" >> $jobfile
3795	cat $source_catalog/Makefile >> $jobfile
3796	echo " " >> $jobfile
3797	echo "%END%" >> $jobfile
3798	echo " " >> $jobfile
3799
3800	echo "cd - > /dev/null" >> $jobfile
3801
3802	fi
3803
3804
3805	# ABSPEICHERN DER KONFIGURATIONSDATEI
3806	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
3807	echo "cat > $config_file << \"%END%\"" >> $jobfile
3808	cat $config_file >> $jobfile
3809	echo "%END%" >> $jobfile
3810	echo " " >> $jobfile
3811
3812
3813	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
3814	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
3815	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
3816	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
3817	echo "%END%" >> $jobfile
3818	if [[ $host = lctit ]]
3819	then
3820	echo "sed 's/bin\/ksh/home2\/usr5\/mkanda\/pub\/ksh/' < $mrun_script_name > mrun_new" >> $jobfile
3821	echo "mv mrun_new $mrun_script_name" >> $jobfile
3822	fi
3823	echo "chmod u+x $mrun_script_name" >> $jobfile
3824	echo "execute_mrun=true" >> $jobfile
3825	echo " " >> $jobfile
3826
3827	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
3828	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
3829	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
3830	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
3831	if [[ $do_remote = true ]]
3832	then
3833	(( i = 0 ))
3834	while (( i < iin ))
3835	do
3836	(( i = i + 1 ))
3837	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
3838	if [[ "${transin[$i]}" = job ]]
3839	then
3840	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
3841	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
3842	echo " " >> $jobfile
3843	echo "%END%" >> $jobfile
3844	else
3845	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
3846	fi
3847
3848	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
3849	echo "if [[ \$? = 1 ]]" >> $jobfile
3850	echo "then" >> $jobfile
3851	echo " echo \" \" " >> $jobfile
3852	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
3853	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
3854	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
3855	echo " execute_mrun=false" >> $jobfile
3856	echo "fi" >> $jobfile
3857	done
3858	fi
3859
3860	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
3861	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
3862	echo "LOCAL_PWD=$working_directory" >> $jobfile
3863	echo "export LOCAL_PWD" >> $jobfile
3864
3865	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
3866	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
3867	echo "export LOCAL_MRUN_PATH" >> $jobfile
3868
3869	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
3870	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
3871	then
3872	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
3873	fi
3874
3875	# MRUN AUF ZIELRECHNER AUFRUFEN
3876	echo "set -x" >> $jobfile
3877	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
3878
3879	echo 'ls -al; echo `pwd`' >> $jobfile
3880	echo "cd \$HOME" >> $jobfile
3881	echo "rm -rf $TEMPDIR" >> $jobfile
3882
3883
3884
3885
3886	# JOB PER SUBJOB STARTEN
3887	if [[ $silent = false ]]
3888	then
3889	printf "\n "
3890	else
3891	printf "\n\n"
3892	fi
3893
3894	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog $jobfile
3895	rm -rf $jobfile
3896
3897
3898	fi # ENDE REMOTE-TEIL
3899
3900
3901
3902	# ENDE DER PROZEDUR

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