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source: palm/trunk/SCRIPTS/mrun @ 1278

Last change on this file since 1278 was 1275, checked in by heinze, 10 years ago
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1	#!/bin/ksh
2
3	# mrun - script for running PALM jobs
4
5	#--------------------------------------------------------------------------------#
6	# This file is part of PALM.
7	#
8	# PALM is free software: you can redistribute it and/or modify it under the terms
9	# of the GNU General Public License as published by the Free Software Foundation,
10	# either version 3 of the License, or (at your option) any later version.
11	#
12	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
13	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
14	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
15	#
16	# You should have received a copy of the GNU General Public License along with
17	# PALM. If not, see <http://www.gnu.org/licenses/>.
18	#
19	# Copyright 1997-2012 Leibniz University Hannover
20	#--------------------------------------------------------------------------------#
21	#
22	# Current revisions:
23	# ------------------
24	#
25	#
26	# Former revisions:
27	# -----------------
28	# $Id: mrun 1275 2014-01-09 13:17:01Z fricke $
29	#
30	# 1274 2014-01-09 13:14:54Z heinze
31	# adjustments for lccrayh
32	#
33	# 1272 2014-01-08 10:19:32Z witha
34	# small adjustment for lcflow
35	#
36	# 1270 2013-12-16 11:05:01Z fricke
37	# call of combine_plot_fields adjusted for lccrayb/lccrayh
38	#
39	# 1255 2013-11-07 14:43:35Z raasch
40	# further adjustments for lccrayb remote access
41	#
42	# 1241 2013-10-30 11:36:58Z heinze
43	# Enable use of nudging input and input of large scale forcing from
44	# external files
45	#
46	# 1229 2013-09-20 06:55:19Z raasch
47	# further adjustments for lccrayb
48	#
49	# 1224 2013-09-16 07:27:23Z raasch
50	# first adjustments for lccrayb
51	#
52	# 1210 2013-08-14 10:58:20Z raasch
53	# fftw support added
54	#
55	# 1201 2013-07-10 16:17:59Z witha
56	# adjustments for Forwind cluster (lcflow)
57	#
58	# 1199 2013-07-05 14:52:22Z raasch
59	# adjustments for CSC Helsinki (lccrayf),
60	# executables for batch jobs can be created in advance, in order to avoid calling
61	# the compiler within the batch job (only works if batch jobs are submitted on
62	# local host)
63	#
64	# 1190 2013-06-25 09:39:21Z heinze
65	# enable use of automatic restarts for ibmh
66	# use of cluster/express queue enabled (ibmh)
67	#
68	# 1124 2013-04-09 15:46:52Z raasch
69	# variable "memory" is exported via typeset option -x, because otherwise an unknown
70	# side effect may lead to data loss while getopts is reading the script-option arguments
71	#
72	# 1122 2013-04-09 08:37:16Z heinze
73	# Bugfix: change type of variable last_char
74	#
75	# 1119 2013-04-05 15:11:19Z raasch
76	# Bugfix for setting -T option for subjob
77	#
78	# 1108 2013-03-05 07:03:32Z raasch
79	# bugfix for coupled runs on lckyut/lckyuh
80	#
81	# 1106 2013-03-04 05:31:38Z raasch
82	# --stdin argument for mpiexec on lckyuh
83	# -y and -Y settings output to header
84	#
85	# 1103 2013-02-20 02:15:53Z raasch
86	# default script runs again under ksh, because of unsolved problems with read
87	# from stdin: when bash script is called from a ksh, message "read error: 0:
88	# Resource temporarily unavailable" appears and script does not stop,
89	# further bash compatibility adjustments,
90	# shebang line replaced by /bin/bash when running jobs on lckyuh; no restarts
91	# on lckyuh, but mrun does not terminate and issues a warning instead
92	#
93	# 1101 2013-02-17 10:20:21Z raasch
94	# script now running under bash instead of ksh, which required small adjustments
95	# (output formatting with printf instead "typeset -L/-R", print replaced by echo,
96	# read from stdin),
97	# cross compilername on lckyuh compute nodes replaced by real compiler name
98	#
99	# 1099 2013-02-10 01:47:43Z raasch
100	# adjustments for Kyushu-University computing center (lckyuh - hayaka)
101	# and for Forwind cluster (lcflow)
102	# small further adjustments for lckyut
103	#
104	# 1094 2013-02-03 01:52:12Z raasch
105	# explicit ssh/scp port can be set in config file with environment variable
106	# scp_port. This port is handled to all ssh/scp/batch_scp calls.
107	# decalpha parts (yonsei) removed
108	#
109	# 2013-02-02 07:06:13Z raasch
110	# adjustments for Kyushu-University computing center (lckyut - tatara)
111	#
112	# 1083 2013-01-04 10:22:09Z maronga
113	# bugfix in parameter file check (read %cpp_options was missing)
114	#
115	# 1069 2012-11-28 16:18:43Z maronga
116	# bugfix: coupling mode was always set to mpi2, typos removed
117	#
118	# 1058 2012-11-21 07:00:35Z raasch
119	# Intel inspector (inspxe) is given the number of PEs instead of the number of
120	# nodes
121	#
122	# 1046 2012-11-09 14:38:45Z maronga
123	# code put under GPL (PALM 3.9)
124	#
125	# 21/03/94 - Siggi - first version finished
126	# 03/03/94 - Siggi - script development started
127	#
128	#--------------------------------------------------------------------------------#
129	# mrun - script for running PALM jobs
130	#--------------------------------------------------------------------------------#
131
132
133
134	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
135
136	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
137	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
138	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
139
140	AddFilenames=""
141	additional_conditions=""
142	add_source_path=""
143	afname=""
144	archive_save=true
145	archive_system=none
146	check_namelist_files=true
147	combine_plot_fields=true
148	compiler_name=""
149	cond1=""
150	cond2=""
151	config_file=.mrun.config
152	coupled_dist=""
153	coupled_mode="mpi1"
154	cpp_opts=""
155	cpp_options=""
156	cpumax=0
157	cpurest=0
158	create_executable_for_batch=false
159	delete_temporary_catalog=true
160	do_batch=false
161	do_compile=true
162	do_remote=false
163	do_stagein=true
164	do_stageout=true
165	do_trace=false
166	email_notification="none"
167	exclude=""
168	executable=""
169	execution_error=false
170	fftw_inc=""
171	fftw_lib=""
172	fftw_support=false
173	fimm=false
174	fname=test
175	fromhost=""
176	global_revision=""
177	group_number=none
178	host=""
179	host_file=""
180	hp=""
181	ignore_archive_error=false
182	input_list=""
183	interpreted_config_file=""
184	job_catalog="~/job_queue"
185	job_on_file=""
186	keep_data_from_previous_run=false
187	link_local_input=false
188	link_local_output=false
189	localhost_realname=$(hostname)
190	local_compile=false
191	local_dvrserver_running=.FALSE.
192	locat=normal
193	mainprog=""
194	makefile=""
195	max_par_io_str=""
196	mc=$0
197	while [[ $(echo $mc \| grep -c "/") != 0 ]]
198	do
199	mc=`echo $mc \| cut -f2- -d"/"`
200	done
201	module_calls=""
202	mrun_script_name=$mc
203	netcdf_inc=""
204	netcdf_lib=""
205	netcdf_support=false
206	node_usage=default
207	numprocs=""
208	numprocs_atmos=0
209	numprocs_ocean=0
210	OOPT=""
211	openmp=false
212	output_list=""
213	package_list=""
214	punkte="..........................................................."
215	queue=none
216	read_from_config=""
217	restart_run=false
218	if [[ `hostname` = rte10 ]]
219	then
220	return_addres=133.5.185.60
221	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
222	elif [[ `hostname` = climate0 ]]
223	then
224	return_addres=165.132.26.68
225	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
226	elif [[ `hostname` = urban00 ]]
227	then
228	return_addres=147.46.30.151
229	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
230	else
231	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
232	fi
233	return_password=""
234	return_username=$LOGNAME
235	remotecall=false
236	remote_username=""
237	run_coupled_model=false
238	run_mode=""
239	scirocco=false
240	store_on_archive_system=false
241	striche=" ----------------------------------------------------------------------------"
242	silent=false
243	source_list=""
244	source_path=SOURCE
245	tasks_per_node=""
246	threads_per_task=1
247	tmpcreate=false
248	tmp_data_catalog=""
249	transfer_problems=false
250	usern=$LOGNAME
251	use_openmp=false
252	version="MRUN 2.0 Rev$Rev: 1275 $"
253	working_directory=`pwd`
254	TOPT=""
255	XOPT=""
256	zeit=$( date \| cut -c 12-19 )
257
258	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 stagein_anz=0 stageout_anz=0
259	typeset -x -i memory=0 # has to be exported here, otherwise an unknown side
260	# effect may cause data loss when getopts is reading the
261	# script-option arguments
262	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek last_char_int maxcycle minuten nodes pes sekunden tp1
263
264
265
266
267	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
268	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
269
270	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
271	# EXPORTIERT WERDEN
272	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
273	export group_number input_list numprocs output_list queue run_mode
274
275
276
277	# FEHLERBEHANDLUNG
278	# BEI EXIT:
279	trap 'rm -rf $working_directory/tmp_mrun
280	if [[ $locat != localhost ]]
281	then
282	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
283	# then
284	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
285	#MRUN-calls on $localhost
286	#
287	#date and time user localhost remotehost termination mrun-command
288	#--------------------------------------------------------------------------------------------------------------------
289	#%STATEND%
290	# chmod 666 ${mrun_path}/statistik/mrun_statistik
291	# fi
292	#
293	# # EINTRAG IN DIE STATISTIK-DATEI
294	# string1=`date` #-L35
295	# string2=$usern #-L12
296	# string3=$localhost_realname #-L12
297	# string4=$host #-L12
298	# string5=$locat #-L12
299	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
300	# then
301	# if [[ $do_batch = true ]]
302	# then
303	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
304	# else
305	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
306	# fi
307	# fi
308	echo " " > /dev/null
309	fi
310
311	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
312	then
313
314	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
315	(( i = 0 ))
316	while (( i < iec ))
317	do
318	(( i = i + 1 ))
319	printf "\n *** Execution of ERROR-command:\n"
320	printf " >>> ${err_command[$i]}\n"
321	eval ${err_command[$i]}
322	done
323	if [[ -n $interpreted_config_file ]]
324	then
325	rm -rf $interpreted_config_file
326	fi
327	if [[ -n .mrun_environment ]]
328	then
329	rm -rf .mrun_environment
330	fi
331	if [[ $tmpcreate = true ]]
332	then
333	printf "\n *** Contents of \"$TEMPDIR\":\n"
334	ls -al; cd
335	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
336	fi
337	if [[ "$dvrserver_id" != "" ]]
338	then
339	echo "+++ killing dvrserver_id=$dvrserver_id"
340	kill $dvrserver_id
341	fi
342	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
343	then
344	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
345	fi
346	printf "\n\n+++ MRUN killed \n\n"
347	elif [[ $locat != control_c ]]
348	then
349	printf "\n\n --> all actions finished\n\n"
350	printf " Bye, bye $usern !!\n\n"
351	fi' exit
352
353
354	# BEI TERMINAL-BREAK:
355	trap 'rm -rf $working_directory/tmp_mrun
356	rm -rf $working_directory/tmp_check_namelist_files
357	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
358	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
359	then
360	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
361	fi
362	if [[ "$dvrserver_id" != "" ]]
363	then
364	echo "+++ killing dvrserver_id=$dvrserver_id"
365	kill $dvrserver_id
366	fi
367	printf "\n+++ MRUN killed by \"^C\" \n\n"
368	locat=control_c
369	exit
370	' 2
371
372
373	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
374	# BEEN SET
375	if [[ "$PALM_BIN" = "" ]]
376	then
377	printf "\n +++ environment variable PALM_BIN has not been set"
378	printf "\n please set it to the directory where the PALM scripts are located"
379	locat=palm_bin; exit
380	fi
381	export PATH=$PALM_BIN:$PATH
382
383
384
385	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
386	# FUER FOLGEJOBS BENOETIGT WIRD
387	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vw:xX:yY:zZ option
388	do
389	case $option in
390	(a) afname=$OPTARG;;
391	(A) store_on_archive_system=true; mc="$mc -A";;
392	(b) do_batch=true; mc="$mc -b";;
393	(B) delete_temporary_catalog=false; mc="$mc -B";;
394	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
395	(C) restart_run=true; mc="$mc -C";;
396	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
397	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
398	(F) job_on_file="-D"; mc="$mc -F";;
399	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
400	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
401	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
402	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
403	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
404	(I) ignore_archive_error=true; mc="$mc -I";;
405	(k) keep_data_from_previous_run=true; mc="$mc -k";;
406	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
407	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
408	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
409	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
410	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
411	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
412	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
413	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
414	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
415	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
416	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
417	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
418	(S) read_from_config=false; mc="$mc -S";;
419	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
420	(T) mrun_tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
421	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
422	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
423	(v) silent=true; mc="$mc -v";;
424	(w) max_par_io_str=$OPTARG; mc="$mc -w$OPTARG";;
425	(x) do_trace=true;set -x; mc="$mc -x";;
426	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
427	(y) ocean_file_appendix=true; mc="$mc -y";;
428	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
429	(z) check_namelist_files=false; mc="$mc -z";;
430	(Z) combine_plot_fields=false; mc="$mc -Z";;
431	(\?) printf "\n +++ unknown option $OPTARG \n"
432	printf "\n --> type \"$0 ?\" for available options \n"
433	locat=parameter;exit;;
434	esac
435	done
436
437
438	# EVTL. POSITIONSPARAMETER EINLESEN
439	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
440	(( to_shift = $OPTIND - 1 ))
441	shift $to_shift
442
443	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
444	if [[ "$1" = "?" ]]
445	then
446	(printf "\n *** mrun can be called as follows:\n"
447	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. -z -Z <modus> \n"
448	printf "\n Description of available options:\n"
449	printf "\n Option Description Default-Value"
450	printf "\n -a base name of input files equiv. -d"
451	printf "\n -A archiving when using file-attribute fl"
452	printf "\n -b batch-job on local machine ---"
453	printf "\n -B do not delete temporary directory at end ---"
454	printf "\n -c configuration file .mrun.config"
455	printf "\n -d base name of files attached to program test"
456	printf "\n -D preprocessor(cpp)-directives \"\" "
457	printf "\n -F create remote job file only ---"
458	printf "\n -h execution host $localhost_realname"
459	printf "\n -i INPUT control list \"\" "
460	printf "\n -I archiving errors of previous batch-jobs"
461	printf "\n will be ignored"
462	printf "\n -k keep data from previous run"
463	printf "\n -K additional conditions for controling"
464	printf "\n usage of conditional code and"
465	printf "\n env-variables in configuration file \"\" "
466	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
467	printf "\n -M Makefile name Makefile"
468	printf "\n -n node usage (shared/not_shared) depending on -h"
469	printf "\n -o OUTPUT control list \"\" "
470	printf "\n -O use OpenMP ---"
471	printf "\n -p software package list \"\" "
472	printf "\n -q queue \"$queue\" "
473	printf "\n -r run control list (combines -i -o) \"\" "
474	printf "\n -s filenames of routines to be compiled \"\" "
475	printf "\n must end with .f, .f90, .F, or .c !"
476	printf "\n use \"..\" for more than one file and wildcards"
477	printf "\n -s LM compiles all locally modified files"
478	printf "\n -S config file interpreted by shellscript ---"
479	printf "\n -t allowed cpu-time in seconds (batch) 0"
480	printf "\n -T tasks per node depending on -h"
481	printf "\n -u username on remote machine \"\" "
482	printf "\n -v no prompt for confirmation ---"
483	printf "\n -w maximum parallel io streams as given by -X"
484	printf "\n -x tracing of mrun for debug purposes ---"
485	printf "\n -X # of processors (on parallel machines) 1"
486	printf "\n -y add appendix \"_O\" to all local output"
487	printf "\n files (ocean precursor runs followed by"
488	printf "\n coupled atmosphere-ocean runs) ---"
489	printf "\n -Y run coupled model, \"#1 #2\" with"
490	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
491	printf "\n -z disable a priori parameter file check ---"
492	printf "\n -Z skip combine_plot_fields at the end of "
493	printf "\n the simulation ---"
494	printf "\n "
495	printf "\n Possible values of positional parameter <modus>:"
496	printf "\n \"?\" - this outline \n\n") \| more
497	exit
498	elif [[ "$1" != "" ]]
499	then
500	printf "\n +++ positional parameter $1 unknown \n"
501	locat=parameter; exit
502	fi
503
504
505
506	# KURZE STARTMELDUNG
507	printf "\n*** $version "
508	printf "\n will be executed. Please wait ..."
509
510
511
512	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
513	if [[ ! -f $config_file ]]
514	then
515	printf "\n\n +++ configuration file: "
516	printf "\n $config_file"
517	printf "\n does not exist"
518	locat=connect; exit
519	fi
520
521
522	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
523	line=""
524	grep "%host_identifier" $config_file > tmp_mrun
525	while read line
526	do
527	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
528	then
529	HOSTNAME=`echo $line \| cut -d" " -s -f2`
530	host_identifier=`echo $line \| cut -d" " -s -f3`
531	if [[ $localhost_realname = $HOSTNAME ]]
532	then
533	localhost=$host_identifier
534	break
535	fi
536	fi
537	done < tmp_mrun
538
539	if [[ "$localhost" = "" ]]
540	then
541	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
542	printf "\n for local host \"$localhost_realname\"."
543	printf "\n Please add line"
544	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
545	printf "\n to the configuration file."
546	locat=localhost; exit
547	fi
548
549
550	# HOSTSPEZIFISCHE VARIABLEN SETZEN
551	case $localhost_realname in
552	(r1\|r2\|h01\|b01) archive_system=tivoli;;
553	(cs*) archive_system=ut;;
554	(fimm.bccs.uib.no) fimm=true;;
555	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
556	(scirocco) scirocco=true;;
557	esac
558
559
560
561	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
562	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
563	[[ "$afname" = "" ]] && afname=$fname
564
565
566	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
567	if [[ "$run_mode" != "" ]]
568	then
569	input_list="$input_list $run_mode"
570	output_list="$output_list $run_mode"
571	fi
572
573
574	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
575	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
576	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
577	# STARTET)
578	if [[ "$fromhost" = "" ]]
579	then
580	fromhost=$localhost
581	fi
582
583
584	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
585	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
586	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
587	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
588	if [[ -n $host && "$host" != $localhost ]]
589	then
590	do_batch=true
591	do_remote=true
592	case $host in
593	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|nech\|necriam\|lccrayb\|lccrayh\|lccrayf\|lcflow\|lckyoto\|lcsgib\|lcsgih\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
594	(*) printf "\n"
595	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
596	printf "\n is not available"
597	locat=nqs; (( iec = 0 )); exit;;
598	esac
599	else
600	host=$localhost
601	fi
602
603
604	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
605	if [[ -n $additional_conditions ]]
606	then
607	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
608	cond1=`echo $additional_conditions \| cut -d" " -f1`
609	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
610	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
611	if [[ -n $dummy ]]
612	then
613	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
614	locat=options; exit
615	fi
616	block=_$cond1
617	[[ -n $cond2 ]] && block=${block}_$cond2
618	fi
619
620
621	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
622	if [[ $run_coupled_model = true ]]
623	then
624
625	if [[ -n $coupled_dist ]]
626	then
627
628	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
629	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
630
631	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
632	then
633
634	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
635	printf "\n PEs (total) : $numprocs"
636	printf "\n PEs (atmosphere): $numprocs_atmos"
637	printf "\n PEs (ocean) : $numprocs_ocean"
638	locat=coupling; exit
639
640	fi
641
642	else
643
644	(( numprocs_ocean = $numprocs / 2 ))
645	(( numprocs_atmos = $numprocs / 2 ))
646
647	fi
648	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
649
650	# GET coupled_mode FROM THE CONFIG FILE
651	line=""
652	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
653	while read line
654	do
655	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && $(echo $line \| cut -d" " -s -f4) = $cond1 && $(echo $line \| cut -d" " -s -f4) = $cond2 ]]
656	then
657	coupled_mode="mpi2"
658	fi
659	done < tmp_mrun
660
661	fi
662
663
664	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
665	# ARCHIVIERUNG FEHLGESCHLAGEN IST
666	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
667	then
668	if [[ $ignore_archive_error = false ]]
669	then
670	printf "\n +++ data archiving of previous run failed"
671	printf "\n see directory \~/job_queue on remote machine"
672	locat=archive; exit
673	else
674	printf "\n +++ warning: data archiving in a previous run failed"
675	printf "\n MRUN continues, trying to get backup copy"
676	fi
677	fi
678
679
680	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
681	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
682	mrun_memory=$memory
683	mrun_group_number=$group_number
684	mrun_cpumax=$cpumax
685	mrun_numprocs=$numprocs
686
687
688	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
689	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
690	if [[ "$read_from_config" = false ]]
691	then
692
693	[[ $silent = false ]] && printf "\n Reading the configuration file... "
694	while read zeile
695	do
696	[[ $silent = false ]] && printf "."
697
698
699	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
700	# ERSETZEN
701	eval zeile=\"$zeile\"
702
703
704	# INTERPRETATION DER ZEILE
705	if [[ "$(echo $zeile)" = "" ]]
706	then
707	# LEERZEILE, KEINE AKTION
708	continue
709
710	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
711	then
712
713	# ZEILE IST KOMMENTARZEILE
714	true
715
716	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
717	then
718
719	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
720	zeile=$(echo $zeile \| cut -c2-)
721	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
722	var=`echo $zeile \| cut -d" " -f1`
723	value=`echo $zeile \| cut -d" " -s -f2`
724	for_host=`echo $zeile \| cut -d" " -s -f3`
725	for_cond1=`echo $zeile \| cut -d" " -s -f4`
726	for_cond2=`echo $zeile \| cut -d" " -s -f5`
727
728	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
729	then
730
731	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
732	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
733	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
734
735
736	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
737	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
738	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
739	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
740	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
741	# KONFIGURATIONSDATEI
742	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
743	then
744	eval $var=\$value
745
746	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
747	if [[ $do_trace = true ]]
748	then
749	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
750	fi
751	fi
752
753	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
754	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
755	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
756	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
757	if [[ $var = host ]]
758	then
759	if [[ -n $host && "$host" != $localhost ]]
760	then
761	do_batch=true
762	do_remote=true
763	case $host in
764	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lccrayb\|lccrayh\|lccrayf\|lcflow\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
765	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
766	printf "\n is not available"
767	locat=nqs; exit;;
768	esac
769	else
770	host=$localhost
771	fi
772	fi
773
774	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
775	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
776	# DEN PROGRAMMEN BENOETIGT WERDEN
777	export $var
778	fi
779
780
781
782
783	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
784	then
785
786	# ZEILE DEFINIERT ERROR-KOMMANDO
787	(( iec = iec + 1 ))
788	zeile=$(echo $zeile \| cut -c4-)
789	err_command[$iec]="$zeile"
790
791	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
792	then
793
794	# ZEILE DEFINIERT INPUT-KOMMANDO
795	(( iic = iic + 1 ))
796	zeile=$(echo $zeile \| cut -c4-)
797	in_command[$iic]="$zeile"
798
799	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
800	then
801
802	# ZEILE DEFINIERT OUTPUT-KOMMANDO
803	(( ioc = ioc + 1 ))
804	zeile=$(echo $zeile \| cut -c4-)
805	out_command[$ioc]="$zeile"
806
807	else
808
809	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
810	# s2a: in/out - Feld
811	# s2b: loc - Feld (optional)
812	# s2c: tr/ar - Feld (optional)
813	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
814	s1=`echo $zeile \| cut -d" " -f1`
815	s2=`echo $zeile \| cut -d" " -s -f2`
816	s2a=$(echo $s2 \| cut -d":" -f1)
817	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
818	then
819	s2b=""
820	s2c=""
821	else
822	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
823	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
824	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
825	fi
826	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
827	s3=`echo $zeile \| cut -d" " -f3`
828	s4=`echo $zeile \| cut -d" " -s -f4`
829	s5=`echo $zeile \| cut -d" " -s -f5`
830	s6=`echo $zeile \| cut -d" " -s -f6`
831
832
833	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
834	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
835	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
836	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
837	# HANDEN SEIN MUSS (D.H. s2b = loc)
838	IFSALT="$IFS"; IFS="$IFS:"
839	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
840	then
841	found=false
842	for actual in $input_list
843	do
844	for formal in $s3
845	do
846	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
847	done
848	done
849	if [[ $found = true ]]
850	then
851	(( iin = iin + 1 ))
852	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
853	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
854	extin[$iin]=$s6
855	fi
856	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
857	then
858	found=false
859	for actual in $output_list
860	do
861	for formal in $s3
862	do
863	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
864	done
865	done
866	if [[ $found = true ]]
867	then
868	(( iout = iout + 1 ))
869	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
870	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
871	fi
872	elif [[ "$s2a" != in && "$s2a" != out ]]
873	then
874	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
875	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
876	locat=connect; exit
877	fi
878	IFS="$IFSALT"
879	fi
880	done < $config_file
881
882	else
883
884
885	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
886	[[ $silent = false ]] && printf "..."
887	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
888	export interpreted_config_file=.icf.$RANDOM
889
890
891
892	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
893	# VERFUEGUNG STELLEN
894	cat > .mrun_environment << %%END%%
895	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
896	config_file = '$config_file', do_remote = '$do_remote',
897	do_trace = '$do_trace', host = '$host',
898	input_list = '$input_list', icf = '$interpreted_config_file',
899	localhost = '$localhost', output_list = '$output_list' /
900
901	%%END%%
902
903	if [[ $localhost_realname = "sx-fep" ]]
904	then
905	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
906	else
907
908	if [[ "$host" != $localhost ]]
909	then
910
911	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
912	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
913	if [[ $? != 0 ]]
914	then
915	printf "\n\n +++ no interpret_config found"
916	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
917	locat=interpret_config; exit
918	fi
919	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
920	$interpret_config_executable
921
922	else
923
924	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
925	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
926	then
927	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
928	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
929	locat=interpret_config; exit
930	else
931	interpret_config${block}.x
932	fi
933
934	fi
935	fi
936	rm .mrun_environment
937
938
939	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
940	chmod u+x $interpreted_config_file
941	export PATH=$PATH:.
942	. $interpreted_config_file
943	rm $interpreted_config_file
944
945	fi
946
947
948	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
949	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
950	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
951	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
952	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
953	[[ "$max_par_io_str" != "" ]] && maximum_parallel_io_streams=$max_par_io_str
954	[[ "$mrun_tasks_per_node" != "" ]] && tasks_per_node=$mrun_tasks_per_node
955
956
957	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
958	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
959	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
960	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
961	if [[ "$SOURCES_COMPLETE" = "" ]]
962	then
963
964	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
965	# VEREINBART WURDE
966	source_path=""
967	line=""
968	grep "%source_path" $config_file > tmp_mrun
969	while read line
970	do
971	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
972	then
973	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
974	then
975	global_source_path=`echo $line \| cut -d" " -f2`
976	fi
977	fi
978	done < tmp_mrun
979
980	line=""
981	found=false
982	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
983	while read line
984	do
985	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
986	then
987	if [[ $found = true ]]
988	then
989	printf "\n\n +++ more than one source path found in configuration file"
990	printf "\n for local host \"$localhost\" "
991	locat=source_path; exit
992	fi
993	source_path=`echo $line \| cut -d" " -f2`
994	found=true
995	fi
996	done < tmp_mrun
997	rm tmp_mrun
998
999	if [[ "$source_path" = "" ]]
1000	then
1001	if [[ "$global_source_path" != "" ]]
1002	then
1003	source_path=$global_source_path
1004	else
1005	printf "\n\n +++ no source path found in configuration file"
1006	printf "\n for local host \"$localhost\" "
1007	locat=source_path; exit
1008	fi
1009	fi
1010	eval source_path=$source_path
1011
1012	if [[ ! -d $source_path ]]
1013	then
1014	printf "\n\n +++ source path \"$source_path\" on local host"
1015	printf "\n \"$localhost\" does not exist"
1016	locat=source_path; exit
1017	fi
1018
1019	fi
1020
1021
1022	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
1023	# DURCH OPTION -G MITGETEILT)
1024	if [[ "$global_revision" = "" && $host != "ibmkisti" ]]
1025	then
1026	global_revision=`svnversion $source_path 2>/dev/null`
1027	global_revision="Rev: $global_revision"
1028	fi
1029
1030
1031	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
1032	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
1033	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
1034	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
1035	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
1036	if [[ -n $host && "$host" != $localhost ]]
1037	then
1038	do_batch=true
1039	do_remote=true
1040	case $host in
1041	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lccrayb\|lccrayh\|lccrayf\|lcflow\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
1042	(*) printf "\n"
1043	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
1044	printf "\n is not available"
1045	locat=nqs; (( iec = 0 )); exit;;
1046	esac
1047	else
1048	host=$localhost
1049	fi
1050
1051
1052	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
1053	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1054	then
1055
1056	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
1057	if [[ ! -n $numprocs ]]
1058	then
1059	printf "\n"
1060	printf "\n +++ option \"-K parallel\" requires additional specification"
1061	printf "\n of the number of processors to be used by"
1062	printf "\n mrun-option \"-X\" or by environment-variable"
1063	printf "\n \"numprocs\" in the configuration file"
1064	locat=numprocs; (( iec = 0 )); exit
1065	fi
1066
1067	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
1068	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
1069	# GESAMTPROZESSORANZAHL IST
1070	if [[ "$tasks_per_node" = "" && $host != lcflow && $host != lcxt5m ]]
1071	then
1072	printf "\n"
1073	printf "\n +++ option \"-T\" (tasks per node) is missing"
1074	printf "\n set -T option or define tasks_per_node in the config file"
1075	locat=tasks_per_node; (( iec = 0 )); exit
1076	fi
1077	if [[ $host != lcflow && $host != lcxt5m ]]
1078	then
1079	(( ival = $tasks_per_node ))
1080	(( pes = numprocs ))
1081	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1082	# then
1083	# (( pes = pes - 1 ))
1084	# fi
1085	(( ii = pes / ival ))
1086	if (( pes - ii * ival > 0 ))
1087	then
1088	printf "\n"
1089	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1090	printf "\n divisor of the total number of processors (option \"-X\")"
1091	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1092	locat=tasks_per_node; (( iec = 0 )); exit
1093	fi
1094	fi
1095
1096
1097	# IBMY HAT NUR EINEN KNOTEN
1098	if [[ $host = ibmy ]]
1099	then
1100	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1101	then
1102	printf "\n"
1103	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1104	printf "\n total number of processors (option \"-X\")"
1105	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1106	locat=tasks_per_node; (( iec = 0 )); exit
1107	fi
1108	fi
1109
1110
1111	# SETTINGS FOR SUBJOB-COMMAND
1112	OOPT="-O $threads_per_task"
1113
1114	# GESAMTZAHL DER KNOTEN BESTIMMEN
1115	if [[ "$tasks_per_node" != "" ]]
1116	then
1117	TOPT="-T $tasks_per_node"
1118	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1119	fi
1120
1121	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1122	# SETZEN
1123	if [[ $node_usage = default ]]
1124	then
1125	if [[ $host = ibms ]]
1126	then
1127	node_usage=shared
1128	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1129	then
1130	node_usage=singlejob
1131	else
1132	node_usage=not_shared
1133	fi
1134	fi
1135
1136	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
1137	then
1138	printf "\n"
1139	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1140	printf "\n \"shared\" or \"not_shared\""
1141	locat=tasks_per_node; (( iec = 0 )); exit
1142	fi
1143
1144	fi
1145
1146	# PRUEFEN, OB HOSTFILE EXISTIERT
1147	if [[ -n $hostfile ]]
1148	then
1149	if [[ ! -f $hostfile ]]
1150	then
1151	printf "\n"
1152	printf "\n +++ hostfile \"$hostfile\" does not exist"
1153	locat=hostfile; exit
1154	fi
1155	fi
1156
1157	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1158	if [[ $host = ibmy && $do_remote = false ]]
1159	then
1160	if [[ ! -f $HOME/.rhosts ]]
1161	then
1162	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1163	printf "\n\n *** file:"
1164	printf "\n $HOME/.rhosts"
1165	printf "\n was created\n"
1166	fi
1167	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1168	then
1169	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1170	printf "\n\n *** file:"
1171	printf "\n $HOME/.rhosts"
1172	printf "\n was extended by the name of the current host\n"
1173	fi
1174	fi
1175
1176
1177	# Set default value for the maximum number of parallel io streams
1178	if [[ "$maximum_parallel_io_streams" = "" ]]
1179	then
1180	maximum_parallel_io_streams=$numprocs
1181	fi
1182
1183
1184	# Set port number option for calls of ssh/scp, subjob and batch_scp scripts
1185	if [[ "$scp_port" != "" ]]
1186	then
1187	PORTOPT="-P $scp_port"
1188	SSH_PORTOPT="-p $scp_port"
1189	fi
1190
1191
1192	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1193	if [[ $queue = none ]]
1194	then
1195	case $host in
1196	(ibmh) queue=cluster;;
1197	(ibmkisti) queue=class.32plus;;
1198	(ibmy) queue=parallel;;
1199	(lckiaps) queue=normal;;
1200	(lckyoto) queue=ph;;
1201	(lckyuh) queue=fx-single;;
1202	(lckyut) queue=cx-single;;
1203	(lcsgib) queue=testq;;
1204	(lcsgih) queue=testq;;
1205	(lctit) queue=S;;
1206	(nech) queue=none;;
1207	(necriam) queue=SP;;
1208	(unics) queue=unics;;
1209	esac
1210	fi
1211
1212
1213	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1214	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1215	# ERMITTELN
1216	(( i = 0 ))
1217	while (( i < iin ))
1218	do
1219	(( i = i + 1 ))
1220	(( maxcycle = 0 ))
1221
1222	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1223	if [[ "${actionin[$i]}" = di ]]
1224	then
1225	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1226	# REM-MASCHINE AUSWERTEN
1227	eval filename=${pathin[$i]}/${endin[$i]}
1228	else
1229	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1230	# REM-MASCHINE AUSWERTEN
1231	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1232	fi
1233	eval pathname=${pathin[$i]}
1234
1235	# SAVE INPUT FILE NAME FOR PARAMETER FILE CHECK
1236	if [[ ("${transin[$i]}" = job) && (-f $filename) ]]
1237	then
1238	filename_input=$filename
1239	fi
1240
1241	# PRUEFEN AUF VORHANDENSEIN
1242	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1243	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1244	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1245	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1246	then
1247	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1248	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1249	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1250	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1251	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1252	if [[ "${transin[$i]}" != "locopt" ]]
1253	then
1254	printf "\n\n +++ INPUT-file: "
1255	if [[ "${extin[$i]}" = "" ]]
1256	then
1257	printf "\n $filename"
1258	else
1259	printf "\n $filename.${extin[$i]}"
1260	fi
1261	printf "\n does not exist\n"
1262	locat=input; exit
1263	else
1264	transin[$i]="unavailable"
1265	fi
1266	else
1267
1268	# ZYKLUSNUMMER FESTSTELLEN
1269	ls -1 -d $filename > filelist 2>/dev/null
1270	ls -1 -d $filename.* >> filelist 2>/dev/null
1271	while read zeile
1272	do
1273	cycle=$(echo $zeile \| cut -f2 -d".")
1274	if [[ "$cycle" = "$zeile" ]]
1275	then
1276	(( icycle = 0 ))
1277	elif [[ "$cycle" = "${extin[$i]}" ]]
1278	then
1279	(( icycle = 0 ))
1280	else
1281	(( icycle = $cycle ))
1282	fi
1283	if (( icycle > maxcycle ))
1284	then
1285	(( maxcycle = icycle ))
1286	file_to_be_used=$zeile
1287	fi
1288	done <filelist
1289	rm filelist
1290
1291	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1292	if (( maxcycle > 0 ))
1293	then
1294	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1295	then
1296	filename=${filename}.$maxcycle.${extin[$i]}
1297	else
1298	filename=${filename}.$maxcycle
1299	fi
1300	else
1301	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1302	then
1303	filename=${filename}.${extin[$i]}
1304	fi
1305	fi
1306
1307	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1308	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1309	absnamein[$i]=$filename
1310	if (( maxcycle > 0 ))
1311	then
1312	if [[ "${actionin[$i]}" = di ]]
1313	then
1314	frelin[$i]=${endin[$i]}.$maxcycle
1315	else
1316	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1317	fi
1318	else
1319	if [[ "${actionin[$i]}" = di ]]
1320	then
1321	frelin[$i]=${endin[$i]}
1322	else
1323	frelin[$i]=${afname}${endin[$i]}
1324	fi
1325	fi
1326
1327	fi
1328	done
1329
1330	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1331	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1332	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1333	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1334	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1335	(( i = 0 ))
1336	while (( i < iout ))
1337	do
1338	(( i = i + 1 ))
1339	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1340	then
1341	if [[ "${actionout[$i]}" = tr ]]
1342	then
1343	actionout[$i]=""
1344	elif [[ "${actionout[$i]}" = trpe ]]
1345	then
1346	actionout[$i]=pe
1347	elif [[ "${actionout[$i]}" = tra ]]
1348	then
1349	actionout[$i]=a
1350	fi
1351	(( maxcycle = 0 ))
1352	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1353	eval catalogname=${pathout[$i]}
1354	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1355	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1356	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1357	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1358	then
1359
1360	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1361	if cat /dev/null > $filename
1362	then
1363	rm $filename
1364	else
1365
1366	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1367	if [[ ! -d $catalogname ]]
1368	then
1369	if mkdir -p $catalogname
1370	then
1371	printf "\n\n *** directory:"
1372	printf "\n $catalogname"
1373	printf "\n was created\n"
1374	else
1375	printf "\n\n +++ OUTPUT-file:"
1376	printf "\n $filename"
1377	printf "\n cannot be created, because directory does not exist"
1378	printf "\n and cannot be created either"
1379	printf "\n"
1380	locat=output ; exit
1381	fi 2>/dev/null
1382	else
1383	printf "\n\n +++ OUTPUT-file:"
1384	printf "\n $filename"
1385	printf "\n cannot be created, although directory exists"
1386	printf "\n"
1387	locat=output ; exit
1388	fi
1389	fi 2>/dev/null
1390	else
1391
1392	# ZYKLUSNUMMER FESTSTELLEN
1393	ls -1 -d $filename > filelist 2>/dev/null
1394	ls -1 -d $filename.* >> filelist 2>/dev/null
1395	while read zeile
1396	do
1397	cycle=$(echo $zeile \| cut -f2 -d".")
1398	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1399	then
1400	(( icycle = 1 ))
1401	else
1402	(( icycle = $cycle + 1 ))
1403	fi
1404	if (( icycle > maxcycle ))
1405	then
1406	(( maxcycle = icycle ))
1407	fi
1408	done <filelist
1409	rm filelist
1410	fi
1411
1412	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1413	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1414	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1415	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1416	if [[ "${actionout[$i]}" != a ]]
1417	then
1418	if (( maxcycle > 0 ))
1419	then
1420	filename=${filename}.$maxcycle
1421	if cat /dev/null > $filename
1422	then
1423	rm $filename
1424	else
1425	printf "\n +++ OUTPUT-file:"
1426	printf "\n $filename"
1427	printf "\n cannot be created"
1428	locat=output ; exit
1429	fi
1430	fi
1431	else
1432	(( maxcycle = maxcycle - 1 ))
1433	if (( maxcycle > 0 ))
1434	then
1435	filename=${filename}.$maxcycle
1436	fi
1437	fi
1438
1439	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1440	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1441	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1442	pathout[$i]=$filename
1443	if (( maxcycle > 0 ))
1444	then
1445	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1446	else
1447	frelout[$i]=${fname}${endout[$i]}
1448	fi
1449
1450	fi
1451	done
1452
1453
1454	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1455	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1456	then
1457	if [[ "$dvr_inc" = "" ]]
1458	then
1459	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1460	printf "\n This is required for the dvrp_graphics package.\n"
1461	locat=dvr; exit
1462	fi
1463	if [[ "$dvr_lib" = "" ]]
1464	then
1465	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1466	printf "\n This is required for the dvrp_graphics package.\n"
1467	locat=dvr; exit
1468	fi
1469	fi
1470
1471
1472	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1473	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1474	# UEBERSETZT ZU WERDEN)
1475	if [[ "$mainprog" = "" && "$executable" = "" ]]
1476	then
1477	printf "\n +++ neither main program nor executable defined"
1478	locat=source; exit
1479	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1480	then
1481	printf "\n +++ main program as well as executable defined"
1482	locat=source; exit
1483	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1484	then
1485	do_compile=false
1486	fi
1487
1488
1489	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1490	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1491	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1492	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1493	then
1494	rm -rf SOURCES_FOR_RUN_$fname
1495	mkdir SOURCES_FOR_RUN_$fname
1496	fi
1497
1498
1499	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1500	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1501	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1502	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1503	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1504	then
1505
1506	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1507
1508	if [[ "$source_list" = LOCALLY_MODIFIED ]]
1509	then
1510
1511	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1512	source_list=""
1513	cd $source_path
1514
1515
1516	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1517	if [[ ! -d .svn ]]
1518	then
1519	printf "\n\n +++ source directory"
1520	printf "\n \"$source_path\" "
1521	printf "\n is not under control of \"subversion\"."
1522	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1523	fi
1524
1525
1526	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1527	Filenames=""
1528	svn status > tmp_mrun
1529	while read line
1530	do
1531	firstc=`echo $line \| cut -c1`
1532	if [[ $firstc = M \|\| $firstc = "?" ]]
1533	then
1534	Name=`echo "$line" \| cut -c8-`
1535	extension=`echo $Name \| cut -d. -f2`
1536	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1537	then
1538	Filenames="$Filenames "$Name
1539	fi
1540	fi
1541	done < tmp_mrun
1542
1543
1544	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1545	for dateiname in $Filenames
1546	do
1547	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1548	source_list=$source_list"$dateiname "
1549	done
1550
1551	cd - > /dev/null
1552
1553
1554	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1555	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1556	# VORHANDEN
1557	elif [[ "$source_list" != "" && $restart_run != true ]]
1558	then
1559
1560	cd $source_path
1561
1562	for filename in $source_list
1563	do
1564
1565	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1566	if [[ $(echo $filename \| grep -c "/") != 0 ]]
1567	then
1568	printf "\n +++ source code file: $filename"
1569	printf "\n must not contain (\"/\") "
1570	locat=source; exit
1571	fi
1572
1573	if [[ ! -f $filename ]]
1574	then
1575	printf "\n +++ source code file: $filename"
1576	printf "\n does not exist"
1577	locat=source; exit
1578	else
1579	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1580	fi
1581
1582	done
1583
1584	cd - > /dev/null
1585
1586	fi
1587
1588
1589	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1590	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1591	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1592	if [[ $restart_run != true ]]
1593	then
1594
1595	if [[ ! -f "$source_path/$mainprog" ]]
1596	then
1597	printf "\n\n +++ main program: $mainprog"
1598	printf "\n does not exist in source directory"
1599	printf "\n \"$source_path\"\n"
1600	locat=source; exit
1601	else
1602	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1603	then
1604	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1605	source_list=${mainprog}" $source_list"
1606	fi
1607	fi
1608	fi
1609
1610
1611	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1612	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1613	if [[ "$restart_run" != true ]]
1614	then
1615	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1616	if [[ ! -f $makefile ]]
1617	then
1618	printf "\n +++ file \"$makefile\" does not exist"
1619	locat=make; exit
1620	else
1621	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1622	fi
1623	fi
1624
1625
1626	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1627	if [[ $restart_run != true && "$add_source_path" != "" ]]
1628	then
1629
1630	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1631	if [[ ! -d $add_source_path ]]
1632	then
1633	printf "\n\n +++ WARNING: additional source code directory"
1634	printf "\n \"$add_source_path\" "
1635	printf "\n does not exist or is not a directory."
1636	printf "\n No source code will be used from this directory!\n"
1637	add_source_path=""
1638	if [[ $silent == false ]]
1639	then
1640	sleep 3
1641	fi
1642	else
1643
1644	cd $add_source_path
1645	found=false
1646
1647	Names=$(ls -1 *.f90 2>&1)
1648	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1649	Names=$(ls -1 *.F90 2>&1)
1650	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1651	Names=$(ls -1 *.F 2>&1)
1652	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1653	Names=$(ls -1 *.f 2>&1)
1654	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1655	Names=$(ls -1 *.c 2>&1)
1656	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1657
1658	cd - > /dev/null
1659	cd SOURCES_FOR_RUN_$fname
1660
1661	# COPY MAKEFILE IF EXISTING
1662	if [[ -f $add_source_path/Makefile ]]
1663	then
1664	printf "\n\n *** user Makefile from directory"
1665	printf "\n \"$add_source_path\" is used \n"
1666	if [[ $silent == false ]]
1667	then
1668	sleep 1
1669	fi
1670	cp $add_source_path/Makefile .
1671	fi
1672
1673	for dateiname in $AddFilenames
1674	do
1675	if [[ -f $dateiname ]]
1676	then
1677	printf "\n +++ source code file \"$dateiname\" found in additional"
1678	printf "\n source code directory \"$add_source_path\" "
1679	printf "\n but was also given with option \"-s\" which means that it should be taken"
1680	printf "\n from directory \"$source_path\"."
1681	locat=source; exit
1682	fi
1683
1684	cp $add_source_path/$dateiname .
1685	source_list="$source_list $dateiname"
1686
1687	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1688	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1689	then
1690	printf "\n\n +++ user file \"$dateiname\" "
1691	printf "\n is not listed in Makefile \n"
1692	locat=source; exit
1693	else
1694
1695	# Default User-Interface von der Liste entfernen, falls Datei
1696	# ein User-Interface enthaelt
1697	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1698	# then
1699	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1700	# then
1701	# rm -rf user_interface.f90
1702	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1703	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1704	# printf "\n since a user-interface is found in file"
1705	# printf "\n \"$add_source_path/$dateiname\" \n"
1706	# sleep 3
1707	# else
1708	if [[ $found = false ]]
1709	then
1710	found=true
1711	printf "\n\n *** following user file(s) added to the"
1712	printf " files to be translated:\n "
1713	fi
1714	printf "$dateiname "
1715	if [[ $silent == false ]]
1716	then
1717	sleep 0.5
1718	fi
1719
1720	fi
1721	done
1722	[[ $found = true ]] && printf "\n"
1723	cd - > /dev/null
1724	fi
1725	fi
1726
1727
1728	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1729	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1730	if [[ $restart_run != true && -n $package_list ]]
1731	then
1732
1733	cd $source_path
1734
1735	for package in $package_list
1736	do
1737
1738	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1739
1740	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1741	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1742	# LIEFERT
1743	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1744
1745
1746	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1747	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1748	for source_list_name in $package_source_list
1749	do
1750	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1751	then
1752
1753	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1754	ending=`echo $source_list_name \| cut -f2 -d.`
1755	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1756	then
1757	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1758	source_list="$source_list $source_list_name"
1759	fi
1760	fi
1761	done
1762	done
1763
1764	cd - > /dev/null
1765	fi
1766
1767
1768	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1769	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1770	# if [[ "$restart_run" != true ]]
1771	# then
1772	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1773	# if [[ ! -f $makefile ]]
1774	# then
1775	# printf "\n +++ file \"$makefile\" does not exist"
1776	# locat=make; exit
1777	# else
1778	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1779	# fi
1780	# fi
1781
1782	fi # do_compile=true
1783
1784
1785	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1786	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1787	if [[ $do_compile = true \|\| $create_executable_for_batch = true ]]
1788	then
1789
1790	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1791	# ZUSAMMENSETZEN
1792	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1793	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1794	then
1795	cpp_options="${cpp_options},-D__ibm=__ibm"
1796	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1797	then
1798	cpp_options="$cpp_options -D__nec"
1799	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1800	then
1801	cpp_options="$cpp_options -D__lc"
1802	else
1803	cpp_options="$cpp_options -D__$localhost"
1804	fi
1805
1806	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1807	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1808	then
1809	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1810	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1811	else
1812	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1813	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1814	fi
1815
1816	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1817	if [[ -n $package_list ]]
1818	then
1819	for package in $package_list
1820	do
1821	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1822	then
1823	if [[ $package != "dvrp_graphics+1PE" ]]
1824	then
1825	cpp_options="${cpp_options},-D__$package=__$package"
1826	else
1827	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1828	export use_seperate_pe_for_dvrp_output=true
1829	fi
1830	else
1831	if [[ $package != "dvrp_graphics+1PE" ]]
1832	then
1833	cpp_options="$cpp_options -D__$package"
1834	else
1835	cpp_options="$cpp_options -D__dvrp_graphics"
1836	export use_seperate_pe_for_dvrp_output=true
1837	fi
1838	fi
1839	done
1840	fi
1841
1842	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1843	if [[ -n $cpp_opts ]]
1844	then
1845	for popts in $cpp_opts
1846	do
1847	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1848	then
1849	cpp_options="${cpp_options},-D__$popts=__$popts"
1850	else
1851	cpp_options="$cpp_options -D__$popts"
1852	fi
1853	done
1854	fi
1855
1856	else
1857
1858
1859	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1860	if [[ $do_remote = false ]]
1861	then
1862	if [[ ! -f $executable ]]
1863	then
1864	printf "\n +++ executable file: $executable"
1865	printf "\n does not exist"
1866	locat=executable; exit
1867	fi
1868	fi
1869	fi
1870
1871
1872	# JOBMODUS FESTSTELLEN
1873	if [[ "$ENVIRONMENT" = BATCH ]]
1874	then
1875	jobmo=BATCH
1876	else
1877	jobmo=INTERACTIVE
1878	fi
1879
1880
1881	# no interactive runs on lctit
1882	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
1883	then
1884	printf "\n +++ no interactive runs allowed on host \"$host\" "
1885	printf "\n please submit batch job using mrun option \"-b\" \n"
1886	locat=normal; exit
1887	fi
1888
1889
1890	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1891	# DURCH BENUTZER ANDERWEITIG VEREINBART
1892	if [[ "$compiler_name" = "" ]]
1893	then
1894
1895	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
1896	locat=compiler_name; exit
1897
1898	fi
1899
1900
1901	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
1902	[[ $localhost = necriam ]] && compiler_name=mpif90
1903
1904
1905
1906	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
1907	kennung=$RANDOM
1908	if [[ "$tmp_user_catalog" = "" ]]
1909	then
1910	if [[ $localhost = ibmh ]]
1911	then
1912	tmp_user_catalog=$SCRATCH
1913	elif [[ $localhost = nech ]]
1914	then
1915	tmp_user_catalog=$WRKSHR
1916	else
1917	tmp_user_catalog=/tmp
1918	fi
1919	fi
1920	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
1921
1922
1923	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
1924	# BESTIMMEN
1925	if [[ "$tmp_data_catalog" = "" ]]
1926	then
1927	if [[ $localhost = nech ]]
1928	then
1929	tmp_data_catalog=$WRKSHR/mrun_restart_data
1930	else
1931	tmp_data_catalog=/tmp/mrun_restart_data
1932	fi
1933	fi
1934
1935
1936	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
1937	# ERSETZEN
1938	if [[ $do_remote = false && $do_compile = true \|\| $create_executable_for_batch = true ]]
1939	then
1940	eval fopts=\"$fopts\"
1941	eval lopts=\"$lopts\"
1942	fi
1943
1944
1945
1946	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
1947	fopts="$fopts $netcdf_inc $fftw_inc $dvr_inc"
1948	lopts="$lopts $netcdf_lib $fftw_lib $dvr_lib"
1949	ROPTS="$ropts"
1950	# if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcflow \|\| $host = lcxe6 \|\| $host = lcxt5m \|\| $host = lck \|\| $host = lckiaps \|\| $host = lckordi \|\| $host = lcsb \|\| $host ) && -n $numprocs ]]
1951	# then
1952	XOPT="-X $numprocs"
1953	# fi
1954
1955
1956
1957	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
1958	# GRAMM BENOETIGT
1959	done=false
1960	while [[ $done = false ]]
1961	do
1962	cputime=$cpumax
1963	if (( $cputime == 0 ))
1964	then
1965	if [[ $do_batch = true ]]
1966	then
1967	printf "\n +++ cpu-time is undefined"
1968	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
1969	printf "\n >>> "
1970	read cputime 1>/dev/null 2>&1
1971	else
1972	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
1973	fi
1974	else
1975	done=true
1976	fi
1977	cpumax=$cputime
1978	done
1979
1980	(( minuten = cputime / 60 ))
1981	(( sekunden = cputime - minuten * 60 ))
1982
1983
1984	# PRUEFEN DER KERNSPEICHERANFORDERUNG
1985	if [[ $do_batch = true ]]
1986	then
1987	done=false
1988	while [[ $done = false ]]
1989	do
1990	if (( memory == 0 ))
1991	then
1992	printf "\n +++ memory demand is undefined"
1993	printf "\n >>> Please type memory in MByte per process as INTEGER:"
1994	printf "\n >>> "
1995	read memory 1>/dev/null 2>&1
1996	else
1997	done=true
1998	fi
1999	done
2000	fi
2001
2002
2003	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
2004	if [[ $do_remote = true && -z $remote_username ]]
2005	then
2006	while [[ -z $remote_username ]]
2007	do
2008	printf "\n +++ username on remote host \"$host\" is undefined"
2009	printf "\n >>> Please type username:"
2010	printf "\n >>> "
2011	read remote_username
2012	done
2013	mc="$mc -u$remote_username"
2014	fi
2015
2016	# CHECK FOR INITIAL COMMANDS AFTER LOGIN
2017	if [[ "$login_init_cmd" != "" ]]
2018	then
2019	export init_cmds="${login_init_cmd};"
2020	fi
2021
2022
2023	# set module load command and export for subjob
2024	if [[ "$modules" != "" ]]
2025	then
2026	if [[ $host = lctit ]]
2027	then
2028	export module_calls=". $modules"
2029	else
2030	export module_calls="module load ${modules};"
2031	fi
2032	fi
2033
2034	# bugfix for wrong netcdf module and for netCDF4 usage in case of mpt
2035	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2036	then
2037	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
2038	then
2039	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
2040	fi
2041	# if [[ $(echo $module_calls \| grep -c mpt) != 0 ]]
2042	# then
2043	# export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/sgi/mpt/2011-02-07/lib:\$LD_LIBRARY_PATH;"
2044	# echo "*** module_calls = $module_calls"
2045	# fi
2046	fi
2047
2048
2049	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
2050	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2051	then
2052	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
2053	then
2054	mpilib=mpt
2055	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
2056	then
2057	mpilib=mvapich
2058	elif [[ $(echo $modules \| grep -c impi ) != 0 ]]
2059	then
2060	mpilib=impi
2061	fi
2062	fi
2063
2064
2065
2066	###########################################################################
2067	# HEADER-AUSGABE
2068	###########################################################################
2069
2070
2071	calltime=$(date)
2072	printf "\n"
2073	# [[ $silent = false ]] && clear
2074	printf "#------------------------------------------------------------------------# \n"
2075	printf "\| %-35s%35s \| \n" "$version" "$calltime"
2076	printf "\| \| \n"
2077	spalte1="called on:"; spalte2=$localhost_realname
2078	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2079	if [[ $local_compile = false ]]
2080	then
2081	if [[ $do_remote = true ]]
2082	then
2083	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2084	else
2085	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2086	fi
2087	else
2088	spalte1="compiling test only!"; spalte2=""
2089	fi
2090	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2091	if [[ -n $numprocs ]]
2092	then
2093	if [[ $run_coupled_model = false ]]
2094	then
2095	spalte1="number of PEs:"; spalte2=$numprocs
2096	else
2097	spalte1="number of PEs:"; spalte2="$numprocs (atmosphere: $numprocs_atmos, ocean: $numprocs_ocean)"
2098	fi
2099	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2100	fi
2101	if [[ -n $tasks_per_node ]]
2102	then
2103	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2104	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2105	fi
2106	if [[ $maximum_parallel_io_streams != $numprocs ]]
2107	then
2108	spalte1="max par io streams:"; spalte2="$maximum_parallel_io_streams"
2109	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2110	fi
2111	if [[ $use_openmp = true ]]
2112	then
2113	spalte1="threads per task:"; spalte2="$threads_per_task"
2114	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2115	fi
2116	printf "\| \| \n"
2117	if [[ $do_compile = true ]]
2118	then
2119	if [[ "$mopts" != "" ]]
2120	then
2121	spalte1="make options:"; spalte2=$(echo "$mopts" \| cut -c-45)
2122	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2123	zeile=$(echo "$mopts" \| cut -c46-)
2124	while [[ "$zeile" != "" ]]
2125	do
2126	spalte1=""
2127	spalte2=$(echo "$zeile" \| cut -c-45)
2128	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2129	zeile=$(echo "$zeile" \| cut -c46-)
2130	done
2131	fi
2132
2133	spalte1="cpp directives:"; spalte2=$(echo "$cpp_options" \| cut -c-45)
2134	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2135	zeile=$(echo "$cpp_options" \| cut -c46-)
2136	while [[ "$zeile" != "" ]]
2137	do
2138	spalte1=""
2139	spalte2=$(echo "$zeile" \| cut -c-45)
2140	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2141	zeile=$(echo "$zeile" \| cut -c46-)
2142	done
2143
2144	spalte1="compiler options:"; spalte2=$(echo "$fopts" \| cut -c-45)
2145	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2146	zeile=$(echo "$fopts" \| cut -c46-)
2147	while [[ "$zeile" != "" ]]
2148	do
2149	spalte1=""
2150	spalte2=$(echo "$zeile" \| cut -c-45)
2151	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2152	zeile=$(echo "$zeile" \| cut -c46-)
2153	done
2154
2155	spalte1="linker options:"; spalte2=$(echo "$lopts" \| cut -c-45)
2156	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2157	zeile=$(echo "$lopts" \| cut -c46-)
2158	while [[ "$zeile" != "" ]]
2159	do
2160	spalte1=""
2161	spalte2=$(echo "$zeile" \| cut -c-45)
2162	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2163	zeile=$(echo "$zeile" \| cut -c46-)
2164	done
2165
2166	spalte1="modules to be load:"; spalte2=$(echo "$modules" \| cut -c-45)
2167	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2168	zeile=$(echo "$modules" \| cut -c46-)
2169	while [[ "$zeile" != "" ]]
2170	do
2171	spalte1=""
2172	spalte2=$(echo "$zeile" \| cut -c-45)
2173	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2174	zeile=$(echo "$zeile" \| cut -c46-)
2175	done
2176
2177	spalte1="main program:"; spalte2=$mainprog
2178	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2179	else
2180	spalte1=executable:; spalte2=$executable
2181	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2182	fi
2183	printf "\| \| \n"
2184	spalte1="base name of files:"; spalte2=$fname
2185	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2186	if [[ $fname != $afname ]]
2187	then
2188	spalte1="base name of input files:"; spalte2=$afname
2189	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2190	fi
2191	spalte1="INPUT control list:"; spalte2=$(echo $input_list)
2192	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2193	spalte1="OUTPUT control list:"; spalte2=$(echo $output_list)
2194	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2195
2196	if [[ "$ocean_file_appendix" = true ]]
2197	then
2198	printf "\| %-35s%-35s \| \n" "suffix \"_O\" is added to local files" " "
2199	fi
2200
2201	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2202	then
2203	spalte1="memory demand / PE":; spalte2="$memory MB"
2204	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2205	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2206	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2207	fi
2208
2209	if [[ $do_compile = true ]]
2210	then
2211	printf "\| \| \n"
2212	printf "\| Files to be compiled: \| \n"
2213	zeile=$source_list
2214	while [[ "$zeile" != "" ]]
2215	do
2216	linestart=$(echo $zeile \| cut -c-70)
2217	printf "\| %-70s \| \n" "$linestart"
2218	zeile=$(echo "$zeile" \| cut -c71-)
2219	done
2220	fi
2221	printf "#------------------------------------------------------------------------#"
2222
2223
2224
2225	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2226	if [[ $do_trace = true ]]
2227	then
2228	(( i = 0 ))
2229	while (( i < iin ))
2230	do
2231	(( i = i + 1 ))
2232	if (( i == 1 ))
2233	then
2234	printf "\n\n >>> INPUT-file assignments:\n"
2235	fi
2236	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2237	done
2238	(( i = 0 ))
2239	while (( i < iout ))
2240	do
2241	(( i = i + 1 ))
2242	if (( i == 1 ))
2243	then
2244	printf "\n\n >>> OUTPUT-file assignments:\n"
2245	fi
2246	printf "\n ${localout[$i]} : ${pathout[$i]}"
2247	done
2248	(( i = 0 ))
2249	while (( i < iic ))
2250	do
2251	(( i = i + 1 ))
2252	if (( i == 1 ))
2253	then
2254	printf "\n\n >>> INPUT-commands:\n"
2255	fi
2256	printf "\n ${in_command[$i]}"
2257	done
2258	(( i = 0 ))
2259	while (( i < ioc ))
2260	do
2261	(( i = i + 1 ))
2262	if (( i == 1 ))
2263	then
2264	printf "\n\n >>> OUTPUT-commands:\n"
2265	fi
2266	printf "\n ${out_command[$i]}"
2267	done
2268	fi
2269
2270
2271	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2272	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2273	then
2274	antwort=dummy
2275	printf "\n\n"
2276	printf " >>> everything o.k. (y/n) ? "
2277	while read antwort
2278	do
2279	if [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2280	then
2281	printf " >>> everything o.k. (y/n) ? "
2282	else
2283	break
2284	fi
2285	done
2286	if [[ $antwort = n \|\| $antwort = N ]]
2287	then
2288	locat=user_abort; (( iec = 0 )); exit
2289	fi
2290	if [[ $do_batch = true ]]
2291	then
2292	printf " >>> batch-job will be created and submitted"
2293	else
2294	if [[ $local_compile = false ]]
2295	then
2296	printf " >>> MRUN will now continue to execute on this machine"
2297	else
2298	printf " >>> a test compilation will now be carried out on this machine"
2299	fi
2300	fi
2301	fi
2302
2303
2304	# PERFORM PARAMETER FILE CHECK (COUPLED RUNS ARE NOT SUPPORTED YET)
2305	# DEFINE VARIABLES FOR FREQUENTLY USED DIRECTORIES
2306	check_depository="${working_directory}/trunk/UTIL"
2307	check_sources="${working_directory}/tmp_check_namelist_files"
2308	skip_check=false
2309
2310	# CHECK IF NAMELIST_FILE_CHECK HAS BEEN COMPILED SUCCESSFULLY
2311	if [[ ! -f $check_depository/check_namelist_files.tar ]]
2312	then
2313	skip_check=true
2314	reason="run on remote host or parameter file check has not been compiled."
2315	fi
2316	if [[ ! -f $PALM_BIN/check_namelist_files.x ]]
2317	then
2318	skip_check=true
2319	reason="parameter file check has not been compiled."
2320	fi
2321
2322	# CHECK FOR PARALLEL RUN; OTHERWISE SKIP CHECK
2323	if [[ "$cond1" != "parallel" && "$cond2" != "parallel" ]]
2324	then
2325	skip_check=true
2326	reason="serial run."
2327	fi
2328
2329	# ONLY PERFORM CHECK IF -z OPTION IS NOT SET, NO RESTART RUN IS CARRIED OUT
2330	# AND IF THE EXECUTION HOST IS THE LOCAL HOST
2331	# ATTENTION: THIS ROUTINE DOES NOT WORK IF THE COMPILER ON THE LOCAL HOST
2332	# DIFFERS FROM THE COMPILER ON THE REMOTE HOST
2333	if [[ $check_namelist_files == false ]]
2334	then
2335	skip_check=true
2336	reason="-z option set."
2337	fi
2338
2339	if [[ $fromhost != $localhost ]]
2340	then
2341	skip_check=true
2342	reason="submitting host is local host."
2343	fi
2344
2345	if [[ $run_coupled_model == true ]]
2346	then
2347	skip_check=true
2348	reason="coupled run."
2349	fi
2350
2351	if [[ $restart_run == true ]]
2352	then
2353	skip_check=true
2354	reason="restart run."
2355	fi
2356
2357	# SKIP CHECK IN CASE OF RESTART RUN: CHECK WHETHER THE LAST CHAR IS "f" IN PARIN
2358	(( last_char_int = `echo $filename_input \| wc -c` - 1 ))
2359	last_char=`echo $filename_input \| cut -c $last_char_int`
2360	if [[ "$last_char" == "f" ]]
2361	then
2362	skip_check=true
2363	reason="restart run."
2364	fi
2365
2366	if [[ $skip_check == false ]]
2367	then
2368	tmp_check=${working_directory}/tmp_check
2369
2370	# GET TOPOGRAPHY PARAMETER FILE SUFFIX (USUALLY "_TOPO"). THIS FILE IS
2371	# NOT NECESSARILY REQUIRED
2372	line=""
2373	found=false
2374	grep "TOPOGRAPHY_DATA" $config_file > $tmp_check
2375	while read line1
2376	do
2377	line="$line1"
2378	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2379	then
2380	topo_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2381	found=true
2382	fi
2383	done < $tmp_check
2384
2385	if [[ $found = false ]]
2386	then
2387	printf "\n +++ no TOPOGRAPHY list entry found in the configuration file."
2388	fi
2389
2390	# GET NUDGING PARAMETER FILE SUFFIX (USUALLY "_NUDGE"). THIS FILE IS
2391	# NOT NECESSARILY REQUIRED
2392	line=""
2393	found=false
2394	grep "NUDGING_DATA" $config_file > $tmp_check
2395	while read line1
2396	do
2397	line="$line1"
2398	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2399	then
2400	nudge_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2401	found=true
2402	fi
2403	done < $tmp_check
2404
2405	if [[ $found = false ]]
2406	then
2407	printf "\n +++ no NUDGING list entry found in the configuration file."
2408	fi
2409
2410	# GET LARGE SCALE FORCING PARAMETER FILE SUFFIX (USUALLY "_LSF"). THIS FILE IS
2411	# NOT NECESSARILY REQUIRED
2412	line=""
2413	found=false
2414	grep "LSF_DATA" $config_file > $tmp_check
2415	while read line1
2416	do
2417	line="$line1"
2418	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2419	then
2420	lsf_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2421	found=true
2422	fi
2423	done < $tmp_check
2424
2425	if [[ $found = false ]]
2426	then
2427	printf "\n +++ no LSF list entry found in the configuration file."
2428	fi
2429
2430	rm -rf ${working_directory}/tmp_check
2431
2432	# CHECK IF THE P3DF FILE MUST BE CHECKED
2433	for item in $input_list
2434	do
2435	if [[ "$item" == "restart" ]]
2436	then
2437	check_restart=1
2438	else
2439	check_restart=0
2440	fi
2441	done
2442
2443	# ERROR IF NO PARAMETER FILE WAS FOUND, OTHERWISE PROCEED
2444	if [[ (! -f $filename_input) && ( "$filename_input" != "" ) ]]
2445	then
2446	printf "\n\n +++ ERROR: parameter file ($filename_input) not found."
2447	locat=check_namelist; exit
2448	fi
2449
2450	# CHECK IF THE RESTART PARAMETER FILE EXISTS (IF NECESSARY)
2451	if [[ $check_restart == 1 ]]
2452	then
2453
2454	filenamef="${filename_input}f"
2455	if [[ ! -f $filenamef ]]
2456	then
2457	printf "\n\n +++ WARNING: restart parameter file ($filenamef) is missing."
2458	check_restart=0
2459	answer=dummy
2460	printf "\n\n"
2461
2462	if [[ $silent == false ]]
2463	then
2464	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2465	do
2466	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2467	read answer
2468	done
2469	if [[ $answer = a \|\| $answer = A ]]
2470	then
2471	printf "\n +++ Aborting...."
2472	locat=normal; exit
2473	fi
2474	fi
2475	else
2476	check_restart=1
2477	fi
2478	fi
2479
2480	# CREATE TEMPORARY SOURCES_FOR_CHECK PATH
2481	mkdir $check_sources
2482	cd $check_sources
2483
2484
2485	# CHECK FOR USER CODE, OTHERWISE USE THE PRECOMPILED CHECK_NAMELIST_FILES.X
2486	if [[ -d $add_source_path ]]
2487	then
2488	printf "\n\n *** copying files from $check_depository"
2489	cp $check_depository/check_namelist_files.tar ./
2490
2491	printf "\n\n *** untar of makefile and source files in $check_sources"
2492	tar -xf check_namelist_files.tar > /dev/null 2>&1
2493
2494	printf "\n\n *** adding user code."
2495	cp $add_source_path/* ./
2496	touch check_namelist_files.f90
2497
2498	# GET COMPILER OPTIONS AND PERFORM MAKE
2499	printf "\n\n *** compiling code if necessary...\n"
2500
2501	# workaround for batch jobs on local machine (lcxe6)
2502	if [[ $do_batch == true && $do_remote == false ]]
2503	then
2504	eval $init_cmds
2505	fi
2506
2507	# GET CHECK OPTIONS
2508	line=""
2509	found=false
2510
2511	grep "$localhost" ${base_directory}/${config_file} \| grep "%cpp_options" > $tmp_check
2512
2513	while read line1
2514	do
2515
2516	if [[ $(echo $line1 \| cut -d" " -s -f3-) = "$localhost" ]]
2517	then
2518	line="$line1"
2519	fi
2520
2521	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2522	then
2523	# EVENTUELLE DOPPELPUNKTE AUS OPTIONSSTRING UND ALLE -D ENTFERNEN
2524	line="$line "
2525	copts_check=`echo $line \| cut -d" " -s -f2 \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g' \| sed 's/-D[^ ]* //g' \| sed 's/ -D.*//g'`
2526	found=true
2527	fi
2528
2529	done < $tmp_check
2530	copts_check="$copts_check -D__check -D__parallel"
2531
2532	make -f Makefile_check F90=$compiler_name_ser COPT="$copts_check"
2533
2534	# GET MAKE OUTPUT
2535	if [[ $? != 0 ]]
2536	then
2537	printf "\n +++ error during make."
2538	answer=dummy
2539	printf "\n\n"
2540	if [[ $silent == false ]]
2541	then
2542	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2543	do
2544	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2545	read answer
2546	done
2547	if [[ $answer = a \|\| $answer = A ]]
2548	then
2549	printf "\n +++ Aborting..."
2550	rm -rf $check_sources
2551	locat=normal; exit
2552	else
2553	skip_check=true
2554	fi
2555	else
2556	skip_check=true
2557	fi
2558	fi
2559	else
2560	cp $PALM_BIN/check_namelist_files.x ./
2561	fi
2562
2563	cp $filename_input ./PARIN
2564	if [[ $check_restart == 1 ]]
2565	then
2566	cp $filenamef ./PARINF
2567	fi
2568
2569	if [[ -f ${pathname}/${fname}${topo_suffix} && $skip_check == false ]]
2570	then
2571	printf "\n *** adding topography data"
2572	cp ${pathname}/${fname}${topo_suffix} ./TOPOGRAPHY_DATA
2573
2574	# IN CASE OF TOPOGRAPHY AND HIGH GRID POINT NUMBERS, THE STACK SIZE
2575	# MUST BE INCREASED. THIS IS DUE TO THE ARRAY nzb_local AND topo_height,
2576	# WHICH REQUIRE SUFFICIENT MEMORY
2577	ulimit -s unlimited
2578	fi
2579
2580	if [[ -f ${pathname}/${fname}${nudge_suffix} && $skip_check == false ]]
2581	then
2582	printf "\n *** adding nudging data"
2583	cp ${pathname}/${fname}${nudge_suffix} ./NUDGING_DATA
2584	fi
2585
2586	if [[ -f ${pathname}/${fname}${lsf_suffix} && $skip_check == false ]]
2587	then
2588	printf "\n *** adding large scale forcing data"
2589	cp ${pathname}/${fname}${lsf_suffix} ./LSF_DATA
2590	fi
2591
2592	# CREATE ENVPAR FILE, WHICH IS NEEDED BY CHECK_NAMELIST_FILES.X
2593	cat > ENVPAR << %%END%%
2594	&envpar run_identifier = '$fname', host = '$host',
2595	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2596	maximum_parallel_io_streams = $maximum_parallel_io_streams,
2597	maximum_cpu_time_allowed = ${cpumax}.,
2598	revision = '$global_revision',
2599	local_dvrserver_running = $local_dvrserver_running /
2600
2601	%%END%%
2602
2603	# SAFETY CHECK: ONLY PROCEED IF THE PARAMETER CHECK PROGRAM WAS PROPERLY COMPILED
2604	if [[ ! -f check_namelist_files.x && $skip_check == false ]]
2605	then
2606	printf "\n +++ WARNING: check_namelist_files.x not found."
2607	answer=dummy
2608	printf "\n\n"
2609
2610	if [[ $silent == false ]]
2611	then
2612	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2613	do
2614	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2615	read answer
2616	done
2617	if [[ $answer = a \|\| $answer = A ]]
2618	then
2619	printf "\n +++ Aborting..."
2620	rm -rf $check_sources
2621	locat=normal; exit
2622	else
2623	printf "\n *** skipping parameter file check."
2624	fi
2625	fi
2626
2627	elif [[ $skip_check == false ]]
2628	then
2629	# STARTING THE PARAMETER FILE CHECK
2630	printf "\n\n *** starting parameter file check..."
2631
2632	# CHECKING THE P3D FILE
2633	printf "\n\n (1) checking $filename_input"
2634	echo "$numprocs 0 0" > VARIN
2635	errors=`./check_namelist_files.x < VARIN 2>&1`
2636
2637	check_error=false
2638	if [[ "$errors" == "" ]]
2639	then
2640	printf " --> o.k."
2641	else
2642	printf " --> failed."
2643	check_error=true
2644	printf "\n\n $errors"
2645	fi
2646
2647	# CHECKING THE PD3F FILE IF NECESSARY
2648	if [[ $check_restart == 1 && $check_error == false ]]
2649	then
2650	printf "\n\n (2) checking $filenamef"
2651
2652	# FIRST CHECK IF INITIALIZING_ACTIONS="READ_RESTART_DATA" IS SET
2653	# IN &INIPAR LIST
2654	found=false
2655	cat PARINF \| while read line
2656	do
2657	line=$(echo $line\|sed 's/ //g')
2658	if [[ $line == "&inipar" ]]
2659	then
2660	start_search=true
2661	fi
2662
2663	if [[ $start_search == true ]]
2664	then
2665	if [[ $line == "initializing_actions='read_restart_data'" ]]
2666	then
2667	found=true
2668	break
2669	fi
2670	fi
2671
2672	if [[ $line == "/" ]]
2673	then
2674	start_search=false
2675	fi
2676
2677	done
2678
2679	if [[ $found = false ]]
2680	then
2681	printf "\n\n +++ ERROR: initializing_actions = 'read_restart_data' not found"
2682	printf "\n in &inipar list in $fname$p3df_suffix."
2683	rm -rf $check_sources
2684	locat=check_namelist; exit
2685	fi
2686
2687	# READ max_user_pr FROM FILES
2688	if [[ -f parin_for_check ]]
2689	then
2690	read max_pr_user < parin_for_check
2691	else
2692	max_user_pr=0
2693	fi
2694
2695	echo "$numprocs 1 $max_pr_user" > VARIN
2696	errors=`./check_namelist_files.x < VARIN 2>&1`
2697
2698	if [[ "$errors" == "" ]]
2699	then
2700	printf " --> o.k."
2701	else
2702	printf " --> failed."
2703	check_error=true
2704	printf "\n\n $errors"
2705	fi
2706	fi
2707
2708	# REPORT ERRORS AND CONTINUE/EXIT
2709	if [[ $check_error == true ]]
2710	then
2711	printf "\n +++ errors found in the parameter file!\n"
2712	answer=dummy
2713	printf "\n\n"
2714
2715	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2716	do
2717	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2718	read answer
2719	done
2720
2721	if [[ $answer = a \|\| $answer = A ]]
2722	then
2723	printf "\n +++ Aborting..."
2724	rm -rf $check_sources
2725	locat=normal; exit
2726	fi
2727	else
2728	printf "\n\n *** parameter file(s) seem(s) to be o.k.\n"
2729	fi
2730	rm -rf $check_sources
2731	fi
2732	else
2733	printf "\n\n +++ skipping parameter file check due to following reason: $reason \n"
2734	fi
2735
2736	# DELETE TEMPORARY DIRECTORY AND FINISH NAMELIST FILE CHECK
2737	rm -rf $check_sources
2738	cd $working_directory
2739
2740
2741	# DETERMINE PATH FOR MAKE DEPOSITORY
2742	if [[ $do_batch = false \|\| $create_executable_for_batch = true ]]
2743	then
2744
2745	line=""
2746	grep "%depository_path" $config_file > tmp_mrun
2747	while read line
2748	do
2749	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2750	then
2751	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2752	then
2753	global_depository_path=`echo $line \| cut -d" " -s -f2`
2754	fi
2755	fi
2756	done < tmp_mrun
2757
2758	line=""
2759	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2760	while read line
2761	do
2762	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2763	then
2764	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2765	then
2766	local_depository_path=`echo $line \| cut -d" " -s -f2`
2767	fi
2768	fi
2769	done < tmp_mrun
2770
2771	if [[ "$local_depository_path" = "" ]]
2772	then
2773	if [[ "$global_depository_path" != "" ]]
2774	then
2775	local_depository_path=$global_depository_path
2776	else
2777	printf "\n\n +++ no depository path found in configuration file"
2778	printf "\n for local host \"$localhost\" "
2779	printf "\n please set \"\%depository_path\" in configuration file\n"
2780	locat=config_file; exit
2781	fi
2782	fi
2783	eval local_depository_path=$local_depository_path
2784	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2785	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2786
2787
2788	basename=`echo $mainprog \| cut -f1 -d"."`
2789	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2790	if [[ ! -f $make_depository ]]
2791	then
2792	printf "\n"
2793	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2794	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2795	fi
2796
2797	fi
2798
2799
2800	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2801	# CHENDE AKTIONEN DURCHGEFUEHRT
2802	if [[ $do_batch = false ]]
2803	then
2804
2805
2806	# TEMPORAEREN KATALOG ERZEUGEN
2807	mkdir -p $TEMPDIR
2808	chmod go+rx $TEMPDIR
2809	tmpcreate=true
2810
2811
2812	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2813	# TEMPORAERES VERZEICHNIS KOPIEREN
2814	if [[ $do_compile = true ]]
2815	then
2816
2817	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2818	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2819	if [[ $localhost = nech ]]
2820	then
2821	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2822	if mkdir -p $TEMPDIR_COMPILE
2823	then
2824	printf "\n *** \"$TEMPDIR_COMPILE\" "
2825	printf "\n is generated as temporary directory for cross compiling\n"
2826	else
2827	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2828	printf "\n needed for cross compilation failed"
2829	locat=compile
2830	exit
2831	fi
2832	else
2833	TEMPDIR_COMPILE=$TEMPDIR
2834	fi
2835
2836	cp $make_depository $TEMPDIR_COMPILE
2837	cd $TEMPDIR_COMPILE
2838	tar -xf $make_depository > /dev/null 2>&1
2839	cd - > /dev/null
2840
2841	# DUE TO UNKNOWN REASONS, COPY WITH cp COMMAND CREATES CORRUPT
2842	# FILES ON CRAY XC30 SYSTEMS (HLRN III), rsync IS USED INSTEAD
2843	rsync -av -t SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE > /dev/null
2844
2845	else
2846
2847	cp $executable ${TEMPDIR}/a.out
2848
2849	fi
2850
2851
2852	# WECHSEL IN TEMPORAEREN KATALOG
2853	cd $TEMPDIR
2854	printf "\n *** changed to temporary directory: $TEMPDIR"
2855
2856
2857	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2858	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2859	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2860	# ERMITTELN
2861	(( i = 0 ))
2862	while (( i < iout ))
2863	do
2864	(( i = i + 1 ))
2865	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2866	then
2867	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2868	else
2869	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2870	fi
2871	done
2872
2873
2874	# IF REQUIRED, START WITH COMPILING ACTIONS
2875	if [[ $do_compile = true ]]
2876	then
2877
2878
2879	if [[ -f a.out ]]
2880	then
2881
2882	# EXECUTABLE WAS CREATED DURING INTERACTIVE CALL OF MRUN
2883	printf "\n\n\n *** executable a.out found"
2884	printf "\n no compilation required \n"
2885
2886	else
2887
2888	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2889	printf "\n\n\n *** compilation starts \n$striche\n"
2890	printf " *** compilation with make using following options:\n"
2891	printf " make depository: $make_depository"
2892	if [[ "$mopts" != "" ]]
2893	then
2894	printf " make options: $mopts\n"
2895	fi
2896	printf " compilername: $compiler_name\n"
2897	printf " compiler options: $fopts\n"
2898	printf " preprocessor directives: $cpp_options \n"
2899	printf " linker options: $lopts \n"
2900	if [[ "$modules" != "" ]]
2901	then
2902	printf " modules to be load: $modules \n"
2903	fi
2904	printf " source code files: $source_list \n"
2905
2906	if [[ $localhost = nech ]]
2907	then
2908	ssh $SSH_PORTOPT 136.172.44.192 -l $usern "$init_cmds $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2909	cp $TEMPDIR_COMPILE/a.out .
2910	[[ $? != 0 ]] && compile_error=true
2911	rm -rf $TEMPDIR_COMPILE
2912	elif [[ $localhost = ibmh ]]
2913	then
2914	printf " compiler is called via ssh on \"plogin1\" \n"
2915	ssh $SSH_PORTOPT plogin1 -l $usern "$init_cmds export PATH=/sw/ibm/xlf/13.1.0.8/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2916	[[ ! -f a.out ]] && compile_error=true
2917	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2918	elif [[ $localhost = lcsgib ]]
2919	then
2920	printf " compiler is called via ssh on \"bicegate0\" \n"
2921	ssh $SSH_PORTOPT bicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2922	[[ ! -f a.out ]] && compile_error=true
2923	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2924	elif [[ $localhost = lcsgih ]]
2925	then
2926	printf " compiler is called via ssh on \"hicegate0\" \n"
2927	ssh $SSH_PORTOPT hicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2928	[[ ! -f a.out ]] && compile_error=true
2929	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2930	elif [[ $localhost = lcflow ]]
2931	then
2932	printf " compiler is called via ssh on \"flow\" \n"
2933	/usr/bin/ssh $SSH_PORTOPT flow02.hpc.uni-oldenburg.de -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2934	check_for_file=`/usr/bin/ssh $SSH_PORTOPT flow02.hpc.uni-oldenburg.de -l $usern "ls $TEMPDIR/a.out 2> /dev/null"`
2935	[[ "$check_for_file" = "" ]] && compile_error=true
2936	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2937	elif [[ $localhost = lccrayb \|\| $localhost = lccrayf \|\| $localhost = lccrayh ]]
2938	then
2939	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2940	else
2941	[[ "$init_cmds" != "" ]] && eval $init_cmds
2942	[[ "$module_calls" != "" ]] && eval $module_calls
2943	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2944	fi
2945
2946	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2947	then
2948	printf "\n +++ error occured while compiling or linking"
2949	locat=compile
2950
2951	exit
2952	else
2953	printf "$striche\n *** compilation finished \n"
2954	fi
2955
2956	fi
2957
2958	fi
2959
2960
2961	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2962	if [[ $local_compile = true ]]
2963	then
2964	cd $HOME
2965	rm -rf $TEMPDIR
2966	locat=local_compile; exit
2967	fi
2968
2969
2970	# BEREITSTELLEN DER INPUT-DATEIEN
2971	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2972	(( i = 0 ))
2973	while (( i < iin ))
2974	do
2975	(( i = i + 1 ))
2976	if (( i == 1 ))
2977	then
2978	printf "\n\n *** providing INPUT-files:\n$striche"
2979	fi
2980
2981
2982	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2983	if [[ "${transin[$i]}" = unavailable ]]
2984	then
2985	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2986	then
2987	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2988	printf "\n is not available!"
2989	else
2990	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2991	printf "\n is not available!"
2992	fi
2993	continue
2994	fi
2995
2996	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2997	files_for_pes=false; datentyp=file
2998	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2999	then
3000	files_for_pes=true; datentyp=directory
3001	actionin[$i]=""
3002	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
3003	then
3004	actionin[$i]=""
3005	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
3006	then
3007	files_for_pes=true; datentyp=directory
3008	actionin[$i]="ar"
3009	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
3010	then
3011	actionin[$i]="ar"
3012	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
3013	then
3014	files_for_pes=true; datentyp=directory
3015	actionin[$i]="fl"
3016	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
3017	then
3018	actionin[$i]="fl"
3019	fi
3020
3021	if [[ $files_for_pes = true ]]
3022	then
3023	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
3024	else
3025	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
3026	fi
3027
3028	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
3029	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
3030	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
3031	# SERVER ZU HOLEN
3032	if [[ "${actionin[$i]}" = fl ]]
3033	then
3034	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
3035	if [[ $files_for_pes = false ]]
3036	then
3037	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
3038	then
3039	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
3040	got_tmp[$i]=true
3041	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
3042	then
3043	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
3044	printf "\n *** trying to use backup copy in \"$WORK\" "
3045	cp $WORK/${frelin[$i]} ${localin[$i]}
3046	else
3047	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
3048	printf "\n or \"$tmp_data_catalog\" does not exist!"
3049	printf "\n *** trying to get copy from archive"
3050	actionin[$i]=ar
3051	fi
3052	else
3053	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
3054	then
3055	mkdir ${localin[$i]}
3056	cd $tmp_data_catalog/${frelin[$i]}
3057	for file in $(ls *)
3058	do
3059	ln $file $TEMPDIR/${localin[$i]}
3060	done
3061	cd $TEMPDIR
3062	got_tmp[$i]=true
3063	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
3064	then
3065	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
3066	printf "\n *** trying to use backup copy in \"$WORK\" "
3067	cp -r $WORK/${frelin[$i]} ${localin[$i]}
3068	else
3069	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
3070	printf "\n or \"$tmp_data_catalog\" does not exist!"
3071	printf "\n *** trying to get copy from archive"
3072	actionin[$i]=ar
3073	fi
3074	fi
3075	fi
3076
3077
3078	# DATEI LIEGT AUF ARCHIV-SERVER
3079	if [[ "${actionin[$i]}" = ar ]]
3080	then
3081
3082	if [[ $files_for_pes = false ]]
3083	then
3084	printf "\n file will be restored from archive-system ($archive_system)!"
3085	else
3086	printf "\n directory will be restored from archive-system ($archive_system)!"
3087	fi
3088
3089	file_restored=false
3090
3091	if [[ $archive_system = asterix ]]
3092	then
3093	do_stagein=true
3094	(( stagein_anz = 0 ))
3095	while [[ $do_stagein = true ]]
3096	do
3097	if [[ $files_for_pes = false ]]
3098	then
3099	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
3100	else
3101	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
3102	fi
3103	cat STAGEIN_OUTPUT
3104	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
3105	then
3106	file_restored=true
3107	do_stagein=false
3108	else
3109	(( stagein_anz = stagein_anz + 1 ))
3110	if (( stagein_anz == 10 ))
3111	then
3112	printf "\n +++ stagein stoped after 10 tries"
3113	locat=stage
3114	exit
3115	fi
3116	printf "\n +++ restoring from archive failed, trying again:"
3117	sleep 900
3118	fi
3119	done
3120	elif [[ $archive_system = DMF ]]
3121	then
3122	if [[ $files_for_pes = false ]]
3123	then
3124	printf "\n +++ restoring of single files impossible with $archive_system !\n"
3125	locat=DMF
3126	exit
3127	else
3128	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
3129	cp -r $ARCHIVE/${frelin[$i]} $PWD
3130	file_restored=true
3131	fi
3132	elif [[ $archive_system = tivoli ]]
3133	then
3134	if [[ $files_for_pes = false ]]
3135	then
3136	if [[ $localhost = lcsgih ]]
3137	then
3138	ssh $SSH_PORTOPT $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3139	else
3140	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3141	fi
3142	else
3143	(( inode = 0 ))
3144	while (( inode < nodes ))
3145	do
3146	if [[ $localhost = lcsgih ]]
3147	then
3148	ssh $SSH_PORTOPT $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3149	else
3150	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3151	fi
3152	(( inode = inode + 1 ))
3153	done
3154	fi
3155	file_restored=true
3156	elif [[ $archive_system = ut ]]
3157	then
3158	if [[ $files_for_pes = false ]]
3159	then
3160	cp $UT/${frelin[$i]} .
3161	else
3162	(( inode = 0 ))
3163	while (( inode < nodes ))
3164	do
3165	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
3166	(( inode = inode + 1 ))
3167	done
3168	fi
3169	file_restored=true
3170	else
3171	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
3172	locat=rearchive
3173	exit
3174	fi
3175
3176	if [[ $file_restored = true ]]
3177	then
3178
3179	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
3180	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
3181	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
3182	if [[ $files_for_pes = false ]]
3183	then
3184	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
3185	else
3186	mkdir $tmp_data_catalog/${frelin[$i]}
3187	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
3188	fi
3189	got_tmp[$i]=true
3190
3191	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
3192	mv ${frelin[$i]} ${localin[$i]}
3193
3194	fi
3195	fi
3196
3197
3198	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
3199	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
3200	then
3201
3202	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
3203	then
3204
3205	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
3206	printf "\n file will be provided for $numprocs processors"
3207	mkdir ${localin[$i]}
3208	ival=$numprocs
3209	(( ii = 0 ))
3210	while (( ii <= ival-1 ))
3211	do
3212	if (( ii < 10 ))
3213	then
3214	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
3215	elif (( ii < 100 ))
3216	then
3217	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
3218	elif (( ii < 1000 ))
3219	then
3220	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
3221	else
3222	cp ${absnamein[$i]} ${localin[$i]}/_$ii
3223	fi
3224	(( ii = ii + 1 ))
3225	done
3226
3227	else
3228
3229	if [[ $files_for_pes = true ]]
3230	then
3231
3232	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
3233	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
3234	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
3235	# PER MOVE UMBENANNT WERDEN
3236	printf "\n providing $numprocs files for the respective processors"
3237	mkdir ${localin[$i]}
3238	if [[ $link_local_input = true ]]
3239	then
3240	printf " using ln -f\n"
3241	cd ${absnamein[$i]}
3242	for file in $(ls *)
3243	do
3244	ln -f $file ${localin[$i]}
3245	done
3246	cd $TEMPDIR
3247	fi
3248	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
3249	if [[ ! -f "${localin[$i]}/_0000" ]]
3250	then
3251	if [[ $link_local_input = true ]]
3252	then
3253	printf " ln failed for .../_0000, using cp...\n"
3254	fi
3255	cp -r ${absnamein[$i]}/* ${localin[$i]}
3256	fi
3257
3258	else
3259	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
3260	if [[ $link_local_input = true ]]
3261	then
3262	printf " using ln -f\n"
3263	ln -f ${absnamein[$i]} ${localin[$i]}
3264	fi
3265	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
3266	if [[ ! -f "${localin[$i]}" ]]
3267	then
3268	if [[ $link_local_input = true ]]
3269	then
3270	printf " ln failed, using cp...\n"
3271	fi
3272	cp ${absnamein[$i]} ${localin[$i]}
3273	fi
3274	fi
3275	fi
3276	fi
3277
3278	done
3279	if (( i != 0 ))
3280	then
3281	printf "\n$striche\n *** all INPUT-files provided \n"
3282	fi
3283
3284
3285	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
3286	(( i = 0 ))
3287	while (( i < iic ))
3288	do
3289	(( i = i + 1 ))
3290	if (( i == 1 ))
3291	then
3292	printf "\n\n *** execution of INPUT-commands:\n$striche"
3293	fi
3294	printf "\n >>> ${in_command[$i]}"
3295	eval ${in_command[$i]}
3296	if (( i == iic ))
3297	then
3298	printf "\n$striche\n"
3299	fi
3300	done
3301
3302
3303	# VERBLEIBENDE CPU-ZEIT BERECHNEN
3304	cpurest=${cpumax}.
3305
3306
3307	# START DVR STREAMING SERVER
3308	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3309	then
3310	if [[ "$dvr_server" != "" ]]
3311	then
3312
3313	printf "\n\n *** preparing the dvr streaming server configuration file"
3314
3315	# Check, if a dvr server is already running
3316	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
3317	if [[ "$running_dvrserver_id" != "" ]]
3318	then
3319
3320	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
3321	printf "\n This server is used instead starting a new one!"
3322	printf "\n If required, script \"process_dvr_output\" has to be run manually."
3323
3324	else
3325
3326	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
3327	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
3328	then
3329	cp ${PALM_BIN}/.dvrserver.config .
3330
3331	# Entering the BASEDIR, UID and GID into this file
3332	user_id=`id -u`
3333	group_id=`id -g`
3334	# & is needed as seperator, because TEMPDIR contains /
3335	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
3336	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
3337	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
3338	mv .dvrserver.3 .dvrserver.config
3339	rm .dvrserver.1 .dvrserver.2
3340
3341	# Start dvr server in background, get his id and print on terminal
3342	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
3343	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
3344	printf "\n *** streaming server with id=$dvrserver_id is started in background"
3345	local_dvrserver_running=.TRUE.
3346	else
3347	printf "\n +++ missing file \".dvrserver.config\" in directory:"
3348	printf "\n \"$PALM_BIN\" "
3349	locat=dvr
3350	exit
3351	fi
3352
3353	fi
3354
3355	else
3356	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
3357	fi
3358	fi
3359
3360
3361	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
3362	# LESEN VON PALM)
3363	cat > ENVPAR << %%END%%
3364	&envpar run_identifier = '$fname', host = '$localhost',
3365	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
3366	maximum_parallel_io_streams = $maximum_parallel_io_streams,
3367	maximum_cpu_time_allowed = ${cpumax}.,
3368	revision = '$global_revision',
3369	local_dvrserver_running = $local_dvrserver_running /
3370
3371	%%END%%
3372
3373
3374	# PROGRAMMSTART
3375	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
3376	PATH=$PATH:$TEMPDIR
3377
3378	# MPI debug option (argument checking, slows down execution due to increased latency)
3379	if [[ "$mpi_debug" = true ]]
3380	then
3381	export MPI_CHECK_ARGS=1
3382	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
3383	fi
3384
3385	if [[ "$totalview" = true ]]
3386	then
3387	printf "\n *** totalview debugger will be used"
3388	tv_opt="-tv"
3389	else
3390	tv_opt=""
3391	fi
3392
3393	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
3394	then
3395	if [[ "$ENVIRONMENT" = BATCH ]]
3396	then
3397	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
3398	then
3399	printf "\n +++ debug is allowed in interactive mode only"
3400	locat=debug
3401	exit
3402	fi
3403	fi
3404	if [[ $localhost = ibmh ]]
3405	then
3406
3407	# SETUP THE IBM MPI ENVIRONMENT
3408	export MP_SHARED_MEMORY=yes
3409	export AIXTHREADS_SCOPE=S
3410	export OMP_NUM_THREADS=$threads_per_task
3411	export AUTHSTATE=files
3412	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3413
3414	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
3415	export MP_ADAPTER_USE=shared
3416	export MP_CPU_USE=multiple
3417	export MP_TIMEOUT=1200
3418
3419	unset MP_TASK_AFFINITY
3420
3421	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
3422	#(( ii = 1 ))
3423	#while (( ii <= $numprocs ))
3424	#do
3425	# echo $localhost_realname >> hostfile
3426	# (( ii = ii + 1 ))
3427	#done
3428	#export MP_HOSTFILE=hostfile
3429
3430	if [[ "$LOADLBATCH" = yes ]]
3431	then
3432	totalview poe a.out $ROPTS
3433	else
3434	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3435	export TVDSVRLAUNCHCMD=ssh
3436	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3437	fi
3438	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
3439	then
3440	# CURRENTLY NO DEBUGGER ON LCSGI
3441	if [[ $run_coupled_model = true ]]
3442	then
3443	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
3444	locat=debug
3445	exit
3446	else
3447	echo "no_coupling" > runfile_atmos
3448	fi
3449	(( ii = $numprocs / $threads_per_task ))
3450	export OMP_NUM_THREADS=$threads_per_task
3451	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3452	if [[ $threads_per_task != 1 ]]
3453	then
3454	printf "\n threads per task: $threads_per_task"
3455	fi
3456	printf "\n\n"
3457	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3458	then
3459	# export MPI_LAUNCH_TIMEOUT=360
3460	if [[ "$totalview" = true ]]
3461	then
3462	printf "\n running totalview debugger"
3463	mpiexec_mpt $tv_opt -n $ii ./a.out $ROPTS < runfile_atmos
3464	else
3465	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3466	fi
3467	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3468	then
3469	# ulimit -s 300000 # A too large stack size causes problems
3470	# export MV2_NUM_PORTS=2
3471	# export MV2_CPU_MAPPING=0:1:2:3
3472	if [[ "$totalview" = true ]]
3473	then
3474	printf "\n running totalview debugger"
3475	mpiexec $tv_opt ./a.out $ROPTS < runfile_atmos
3476	else
3477	mpiexec ./a.out $ROPTS < runfile_atmos
3478	fi
3479	fi
3480	else
3481	printf "\n +++ no debug available on \"$localhost\" "
3482	printf "\n or not implemented in mrun so far"
3483	locat=debug
3484	exit
3485	fi
3486
3487	# end debug mode
3488	else
3489
3490	# normal execution
3491	if [[ -n $numprocs ]]
3492	then
3493	# RUNNING THE PROGRAM ON PARALLEL MACHINES
3494	if [[ $(echo $host \| cut -c1-3) = ibm ]]
3495	then
3496	# SETUP THE IBM MPI ENVIRONMENT
3497	if [[ $host != ibmh && $host != ibmkisti ]]
3498	then
3499	export MP_SHARED_MEMORY=yes
3500	export AIXTHREAD_SCOPE=S
3501	export OMP_NUM_THREADS=$threads_per_task
3502	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
3503	export AUTHSTATE=files
3504	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3505	# export MP_PRINTENV=yes
3506
3507	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3508	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3509	export MP_WAIT_MODE=poll
3510	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3511	fi
3512
3513	if [[ $host = ibmkisti ]]
3514	then
3515	export LANG=en_US
3516	export MP_SHARED_MEMORY=yes
3517	if [[ $threads_per_task = 1 ]]
3518	then
3519	export MP_SINGLE_THREAD=yes
3520	export MEMORY_AFFINITY=MCM
3521	else
3522	export OMP_NUM_THREADS=$threads_per_task
3523	fi
3524	fi
3525
3526	if [[ "$LOADLBATCH" = yes ]]
3527	then
3528	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3529	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3530	then
3531	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3532	else
3533	if [[ $run_coupled_model = false ]]
3534	then
3535	if [[ "$ocean_file_appendix" = true ]]
3536	then
3537	echo "precursor_ocean" > runfile_atmos
3538	else
3539	echo "precursor_atmos" > runfile_atmos
3540	fi
3541	else
3542	(( iia = $numprocs_atmos / $threads_per_task ))
3543	(( iio = $numprocs_ocean / $threads_per_task ))
3544	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3545	printf "\n using $coupled_mode coupling"
3546	printf "\n\n"
3547	echo "coupled_run $iia $iio" > runfile_atmos
3548	fi
3549	poe ./a.out $ROPTS < runfile_atmos
3550	fi
3551	else
3552	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
3553	then
3554	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3555	elif [[ $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibmy ]]
3556	then
3557	if [[ -f $hostfile ]]
3558	then
3559	cp $hostfile hostfile
3560	else
3561	(( ii = 1 ))
3562	while (( ii <= $numprocs ))
3563	do
3564	echo $localhost_realname >> hostfile
3565	(( ii = ii + 1 ))
3566	done
3567	fi
3568	export MP_HOSTFILE=hostfile
3569	if [[ $run_coupled_model = false ]]
3570	then
3571	if [[ "$ocean_file_appendix" = true ]]
3572	then
3573	echo "precursor_ocean" > runfile_atmos
3574	else
3575	echo "precursor_atmos" > runfile_atmos
3576	fi
3577	else
3578	(( iia = $numprocs_atmos / $threads_per_task ))
3579	(( iio = $numprocs_ocean / $threads_per_task ))
3580	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3581	printf "\n using $coupled_mode coupling"
3582	printf "\n\n"
3583	echo "coupled_run $iia $iio" > runfile_atmos
3584	fi
3585	if [[ $localhost = ibmy ]]
3586	then
3587	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3588	else
3589	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
3590	fi
3591
3592	else
3593	if [[ "$host_file" = "" ]]
3594	then
3595	printf "\n +++ no hostfile given in configuration file"
3596	locat=config_file
3597	exit
3598	else
3599	eval host_file=$host_file
3600	fi
3601	export MP_HOSTFILE=$host_file
3602	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3603	fi
3604	fi
3605	elif [[ $host = nech \|\| $host = necriam ]]
3606	then
3607	(( ii = nodes ))
3608	if [[ $ii = 1 ]]
3609	then
3610	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3611	export MPIPROGINF=YES
3612	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3613	echo "*** execution on single node with mpirun"
3614	mpirun -np $numprocs ./a.out $ROPTS
3615	else
3616	(( i = 0 ))
3617	while (( i < ii ))
3618	do
3619	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3620	(( i = i + 1 ))
3621	done
3622
3623	echo "#!/bin/sh" > mpi_exec_shell
3624	echo " " >> mpi_exec_shell
3625	echo "set -u" >> mpi_exec_shell
3626	echo "F_ERRCNT=0" >> mpi_exec_shell
3627	echo "MPIPROGINV=YES" >> mpi_exec_shell
3628	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3629	echo "cpurest=$cpurest" >> mpi_exec_shell
3630	echo "fname=$fname" >> mpi_exec_shell
3631	echo "localhost=$localhost" >> mpi_exec_shell
3632	echo "return_addres=$return_addres" >> mpi_exec_shell
3633	echo "return_username=$return_username" >> mpi_exec_shell
3634	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3635	echo "write_binary=$write_binary" >> mpi_exec_shell
3636	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3637	echo " " >> mpi_exec_shell
3638	echo "export F_ERRCNT" >> mpi_exec_shell
3639	echo "export MPIPROGINV" >> mpi_exec_shell
3640	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3641	echo "export cpurest" >> mpi_exec_shell
3642	echo "export fname" >> mpi_exec_shell
3643	echo "export localhost" >> mpi_exec_shell
3644	echo "export return_addres" >> mpi_exec_shell
3645	echo "export return_username" >> mpi_exec_shell
3646	echo "export tasks_per_node" >> mpi_exec_shell
3647	echo "export write_binary" >> mpi_exec_shell
3648	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3649	echo " " >> mpi_exec_shell
3650	echo "exec ./a.out" >> mpi_exec_shell
3651
3652	chmod u+x mpi_exec_shell
3653	export MPIPROGINF=YES
3654	mpirun -f multinode_config &
3655	wait
3656
3657	fi
3658	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
3659	then
3660
3661	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3662	# DOES NOT EXIST
3663	if [[ $host != lccrayb &&$host != lccrayf && $host != lccrayh && $host != lcsgih && $host != lcsgib && $host != lckyuh && $host != lckyut ]]
3664	then
3665	if [[ -f $hostfile ]]
3666	then
3667	cp $hostfile hostfile
3668	(( ii = $numprocs / $threads_per_task ))
3669	else
3670	(( ii = 1 ))
3671	while (( ii <= $numprocs / $threads_per_task ))
3672	do
3673	echo $localhost_realname >> hostfile
3674	(( ii = ii + 1 ))
3675	done
3676	fi
3677	eval zeile=\"`head -n $ii hostfile`\"
3678	printf "\n *** running on: $zeile"
3679	fi
3680
3681	(( ii = $numprocs / $threads_per_task ))
3682	export OMP_NUM_THREADS=$threads_per_task
3683	# echo "*** OMP_NUM_THREADS=$OMP_NUM_THREADS"
3684	if [[ $threads_per_task != 1 ]]
3685	then
3686	# increase stack size to unlimited, because large runs
3687	# may abort otherwise
3688	ulimit -Ss unlimited
3689	printf "\n threads per task: $threads_per_task stacksize: unlimited"
3690	fi
3691	if [[ $run_coupled_model = false ]]
3692	then
3693	if [[ "$ocean_file_appendix" = true ]]
3694	then
3695	echo "precursor_ocean" > runfile_atmos
3696	else
3697	echo "precursor_atmos" > runfile_atmos
3698	fi
3699	printf "\n\n"
3700	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3701	then
3702	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3703	then
3704	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3705	# export MPI_DSM_DISTRIBUTE=1
3706	# MPI_DSM_CPULIST: pin MPI processes to cores
3707	if [[ $use_openmp = false ]]
3708	then
3709	if [[ "$sgi_feature" = ice2 ]]
3710	then
3711	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
3712	else
3713	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3714	fi
3715	else
3716	unset MPI_DSM_CPULIST
3717	fi
3718	# MPI_IB_RAILS: use both IB rails on ICE2
3719	export MPI_BUFS_PER_HOST=512
3720	export MPI_IB_RAILS=2
3721	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3722	export MPI_CONNECTIONS_THRESHOLD=8192
3723	# echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
3724	export MPI_TYPE_DEPTH=20
3725	# echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
3726	export MPI_GROUP_MAX=64
3727	# echo "*** MPI_GROUP_MAX=$MPI_GROUP_MAX"
3728	if [[ $use_openmp = true ]]
3729	then
3730	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3731	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3732	else
3733	mpiexec_mpt -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3734	fi
3735
3736	# next is test for openmp usage
3737	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3738	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
3739	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3740	then
3741	export MV2_NUM_PORTS=2
3742	# The default setting of MV2_CPU_MAPPING gives best results
3743	# export MV2_ENABLE_AFFINITY=1
3744	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3745	# if [[ "$sgi_feature" = ice2 ]]
3746	# then
3747	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
3748	# else
3749	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3750	# fi
3751	if [[ $use_openmp = true ]]
3752	then
3753	unset MV2_CPU_MAPPING
3754	export MV2_ENABLE_AFFINITY=0
3755	fi
3756	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
3757	echo "*** MV2_ENABLE_AFFINITY=$MV2_ENABLE_AFFINITY"
3758	if [[ $use_openmp = true ]]
3759	then
3760	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3761	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3762	else
3763	mpiexec -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3764	fi
3765	elif [[ "$mpilib" = impi ]]
3766	then
3767	echo "mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos"
3768	mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos
3769	fi
3770	elif [[ $host = lccrayb \|\| $host = lccrayh ]]
3771	then
3772	echo "--- aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos"
3773	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3774	# aprun -n $ii -ss -r2 -j1 a.out $ROPTS < runfile_atmos
3775	elif [[ $host = lccrayf ]]
3776	then
3777	aprun -n $ii -N $tasks_per_node -m ${memory}M a.out $ROPTS < runfile_atmos
3778	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3779	then
3780	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3781	elif [[ $host = lcflow ]]
3782	then
3783	mpirun -bootstrap sge -np $ii -env I_MPI_FABRICS shm:ofa a.out < runfile_atmos $ROPTS
3784	elif [[ $host = lcsb ]]
3785	then
3786	mpirun_rsh -hostfile $PBS_NODEFILE -np `cat $PBS_NODEFILE \| wc -l` a.out < runfile_atmos $ROPTS
3787	elif [[ $host = lckiaps ]]
3788	then
3789	mpirun -np $ii -f $PBS_NODEFILE a.out < runfile_atmos $ROPTS
3790	elif [[ $host = lckyu* ]]
3791	then
3792	mpiexec -n $ii --stdin runfile_atmos ./a.out $ROPTS
3793	else
3794	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3795	fi
3796	else
3797
3798	# currently there is no full MPI-2 support on ICE and XT4
3799	(( iia = $numprocs_atmos / $threads_per_task ))
3800	(( iio = $numprocs_ocean / $threads_per_task ))
3801	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3802	printf "\n using $coupled_mode coupling"
3803	printf "\n\n"
3804
3805	if [[ $coupled_mode = "mpi2" ]]
3806	then
3807	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3808	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3809	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3810	then
3811
3812	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3813	then
3814	# export MPI_LAUNCH_TIMEOUT=360
3815	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3816	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3817	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3818	then
3819	# ulimit -s 300000 # A too large stack size causes problems
3820	# export MV2_NUM_PORTS=2
3821	# export MV2_CPU_MAPPING=0:1:2:3
3822	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3823	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3824	fi
3825
3826	elif [[ $host = lccrayf \|\| $host = lcxe6 \|\| $host = lcxt5m ]]
3827	then
3828
3829	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3830	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3831
3832	else
3833	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3834	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3835	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3836	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3837	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3838	fi
3839	wait
3840
3841	else
3842
3843	echo "coupled_run $iia $iio" > runfile_atmos
3844	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3845	then
3846
3847	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3848	then
3849	# export MPI_LAUNCH_TIMEOUT=360
3850	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3851	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3852	then
3853	# ulimit -s 300000 # A too large stack size causes problems
3854	# export MV2_NUM_PORTS=2
3855	# export MV2_CPU_MAPPING=0:1:2:3
3856	mpiexec ./a.out $ROPTS < runfile_atmos
3857	fi
3858
3859	elif [[ $host = lccrayf \|\| $host = lcxe6 \|\| $host = lcxt5m ]]
3860	then
3861
3862	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3863
3864	elif [[ $host = lck \|\| $host = lckordi ]]
3865	then
3866
3867	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3868
3869	elif [[ $host = lckyu* ]]
3870	then
3871
3872	mpiexec -n $ii --stdin runfile_atmos ./a.out $ROPTS
3873
3874	fi
3875	wait
3876	fi
3877
3878	fi
3879	elif [[ $host = lckyoto ]]
3880	then
3881	set -xv
3882	export P4_RSHCOMMAND=plesh
3883	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
3884	if [[ "$ENVIRONMENT" = BATCH ]]
3885	then
3886	if [[ "$cond2" = fujitsu ]]
3887	then
3888	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
3889	elif [[ "cond2" = pgi ]]
3890	then
3891	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
3892	else
3893	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
3894	fi
3895	else
3896	if [[ "$cond2" = "" ]]
3897	then
3898	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
3899	else
3900	mpirun -np $numprocs ./a.out $ROPTS
3901	fi
3902	fi
3903	set +xv
3904	elif [[ $host = lctit ]]
3905	then
3906	export OMP_NUM_THREADS=$threads_per_task
3907	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3908	if [[ "$threads_per_task" != 1 ]]
3909	then
3910	export MV2_ENABLE_AFFINITY=0
3911	fi
3912	echo "----- PBS_NODEFILE content:"
3913	cat $PBS_NODEFILE
3914	echo "-----"
3915	(( ii = $numprocs / $threads_per_task ))
3916	echo "mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS"
3917	mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS
3918	else
3919	mpprun -n $numprocs a.out $ROPTS
3920	fi
3921	[[ $? != 0 ]] && execution_error=true
3922
3923
3924	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3925	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3926	then
3927	apprentice
3928	fi
3929	else
3930	a.out $ROPTS
3931	fi
3932	fi
3933	if [[ $? != 0 \|\| $execution_error = true ]]
3934	then
3935
3936	# ABBRUCH BEI LAUFZEITFEHLER
3937	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3938	printf "\n +++ runtime error occured"
3939	locat=execution
3940	exit
3941	else
3942	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3943	printf "\n$striche\n *** execution finished \n"
3944
3945	# Stop the dvr streaming server and process the dvr output in order
3946	# to create dvrs- and html-files containing all streams
3947	if [[ "$dvrserver_id" != "" ]]
3948	then
3949	kill $dvrserver_id
3950	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3951
3952	# If there is a directory, data have been output by the
3953	# streaming server. Otherwise, user has chosen dvrp_output=local
3954	if [[ -d DATA_DVR ]]
3955	then
3956
3957	# Add the current dvr configuration file to the dvr output
3958	# directory
3959	cp .dvrserver.config DATA_DVR
3960
3961	# Process the dvr output (option -s for also generating
3962	# sequence mode data)
3963	process_dvr_output -d DATA_DVR -f $fname -s
3964
3965	else
3966
3967	# Process the local output
3968	process_dvr_output -l -d DATA_DVR -f $fname
3969
3970	fi
3971
3972	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3973	then
3974
3975	# Process dvr output generated in local mode (dvrp_output=local)
3976	process_dvr_output -l -d DATA_DVR -f $fname
3977
3978	fi
3979	fi
3980
3981
3982
3983	# Call of combine_plot_fields in order to merge single files written
3984	# by each PE into one file.
3985	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
3986	then
3987	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
3988	printf "\n 2d- and/or 3d-data may be incomplete!"
3989	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
3990	elif [[ "$combine_plot_fields" == true ]]
3991	then
3992	if [[ $localhost = lccrayh \|\| $localhost = lccrayb ]]
3993	then
3994	printf "\n\n\n *** post-processing: now executing \"aprun -n 1 -N 1 combine_plot_fields${block}.x\" ..."
3995	aprun -n 1 -N 1 combine_plot_fields${block}.x #$ROPTS < runfile_atmos
3996	else
3997	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
3998	combine_plot_fields${block}.x
3999	fi
4000	else
4001	# Temporary solution to skip combine_plot_fields. This is necessary in case of huge amount of
4002	# data output. To do: extend this branch by creating a batch job for combine_plot_fields.
4003	printf "\n\n\n *** post-processing: skipping combine_plot_fields (-Z option set) ..."
4004	fi
4005
4006
4007
4008	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
4009	(( i = 0 ))
4010	while (( i < ioc ))
4011	do
4012	(( i = i + 1 ))
4013	if (( i == 1 ))
4014	then
4015	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
4016	fi
4017	printf "\n >>> ${out_command[$i]}"
4018	eval ${out_command[$i]}
4019	if (( i == ioc ))
4020	then
4021	printf "\n$striche\n"
4022	fi
4023	done
4024
4025
4026	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
4027	if [[ $do_trace = true ]]
4028	then
4029	printf "\n\n"
4030	ls -al
4031	fi
4032
4033
4034
4035	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
4036	(( i = 0 ))
4037	while (( i < iout ))
4038	do
4039	(( i = i + 1 ))
4040	if (( i == 1 ))
4041	then
4042	printf "\n\n *** saving OUTPUT-files:\n$striche"
4043	fi
4044
4045	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
4046	files_for_pes=false; filetyp=file
4047	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
4048	then
4049	files_for_pes=true; filetyp=directory
4050	actionout[$i]=""
4051	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
4052	then
4053	actionout[$i]=""
4054	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
4055	then
4056	files_for_pes=true; filetyp=directory
4057	actionout[$i]="ar"
4058	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
4059	then
4060	actionout[$i]="ar"
4061	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
4062	then
4063	files_for_pes=true; filetyp=directory
4064	actionout[$i]="fl"
4065	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
4066	then
4067	actionout[$i]="fl"
4068	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
4069	then
4070	files_for_pes=true; filetyp=directory
4071	actionout[$i]="tr"
4072	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
4073	then
4074	actionout[$i]="tr"
4075	fi
4076
4077	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
4078	then
4079	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
4080	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
4081	then
4082	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
4083	else
4084
4085
4086	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
4087	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
4088	# REMOTE-RECHNUNGEN
4089	if [[ "${actionout[$i]}" = tr ]]
4090	then
4091	if [[ $localhost != $fromhost ]]
4092	then
4093	if [[ $files_for_pes = false ]]
4094	then
4095	cps=""
4096	cst=""
4097	else
4098	cps=-c
4099	cst="/"
4100	fi
4101	if [[ $localhost = nech ]]
4102	then
4103
4104	# TRANSFER IN EIGENSTAENDIGEM JOB
4105	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4106	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4107	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4108	if [[ $files_for_pes = false ]]
4109	then
4110	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4111	else
4112	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
4113	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
4114	fi
4115
4116	echo "set -x" > transfer_${localout[$i]}
4117	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4118
4119	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
4120	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
4121	printf "\n or higher cycle\n"
4122	echo "batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4123
4124	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4125
4126	if [[ $localhost = nech ]]
4127	then
4128	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
4129	else
4130	if [[ "$LOGNAME" = b323013 ]]
4131	then
4132	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4133	else
4134	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4135	fi
4136	fi
4137
4138	else
4139
4140	# TRANSFER INNERHALB DIESES JOBS
4141	transfer_failed=false
4142	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
4143	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
4144	if [[ $localhost = lccrayb ]]
4145	then
4146	ssh $usern@blogin1 "cd $TEMPDIR; batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres ${localout[$i]} \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}"
4147	elif [[ $localhost = lccrayh ]]
4148	then
4149	ssh $usern@hlogin1 "cd $TEMPDIR; batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres ${localout[$i]} \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}"
4150	else
4151	batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4152	fi
4153	[[ $? != 0 ]] && transfer_failed=true
4154
4155	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4156	# LOKALER MASCHINE ANLEGEN
4157	if [[ $transfer_failed = true ]]
4158	then
4159	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4160	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4161
4162	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4163	# ANLEGEN.
4164	eval local_catalog=${pathout[$i]}
4165	if [[ ! -d $local_catalog ]]
4166	then
4167	printf " *** local directory does not exist. Trying to create:\n"
4168	printf " $local_catalog \n"
4169	mkdir -p $local_catalog
4170	fi
4171	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4172	transfer_problems=true
4173	fi
4174	fi
4175	else
4176
4177	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
4178	actionout[$i]=""
4179	fi
4180	fi
4181
4182
4183	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
4184	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
4185	# REMOTE-RECHNUNGEN
4186	if [[ "${actionout[$i]}" = tra ]]
4187	then
4188	if [[ $localhost != $fromhost ]]
4189	then
4190	if [[ $localhost = ibmh \|\| $localhost = nech ]]
4191	then
4192
4193	# TRANSFER IN EIGENSTAENDIGEM JOB
4194	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4195	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4196	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4197	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4198
4199	echo "set -x" > transfer_${localout[$i]}
4200	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4201
4202	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
4203	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
4204	printf "\n or higher cycle\n"
4205	echo "batch_scp $PORTOPT -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4206
4207	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4208
4209	if [[ $localhost = nech ]]
4210	then
4211	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
4212	else
4213	if [[ $LOGNAME = b323013 ]]
4214	then
4215	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4216	else
4217	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4218	fi
4219	fi
4220
4221	else
4222
4223	# TRANSFER INNERHALB DIESES JOBS
4224	transfer_failed=false
4225	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
4226	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
4227	if [[ $localhost = lccrayb ]]
4228	then
4229	ssh $usern@blogin1 "cd $TEMPDIR; batch_scp $PORTOPT -A -b -m -u $return_username $return_addres ${localout[$i]} \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}"
4230	elif [[ $localhost = lccrayh ]]
4231	then
4232	ssh $usern@hlogin1 "cd $TEMPDIR; batch_scp $PORTOPT -A -b -m -u $return_username $return_addres ${localout[$i]} \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}"
4233	else
4234	batch_scp $PORTOPT -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4235	fi
4236	[[ $? != 0 ]] && transfer_failed=true
4237
4238	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4239	# LOKALER MASCHINE ANLEGEN
4240	if [[ $transfer_failed = true ]]
4241	then
4242	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4243	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4244
4245	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4246	# ANLEGEN
4247	eval local_catalog=${pathout[$i]}
4248	if [[ ! -d $local_catalog ]]
4249	then
4250	printf " *** local directory does not exist. Trying to create:\n"
4251	printf " $local_catalog \n"
4252	mkdir -p $local_catalog
4253	fi
4254
4255	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4256	transfer_problems=true
4257	fi
4258	fi
4259	else
4260
4261	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
4262	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
4263	actionout[$i]=a
4264	fi
4265	fi
4266
4267
4268	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
4269	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
4270	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
4271	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
4272	if [[ "${actionout[$i]}" = fl ]]
4273	then
4274	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4275	chmod g+rx $tmp_data_catalog
4276	if [[ $files_for_pes = false ]]
4277	then
4278	printf "\n >>> OUTPUT: ${localout[$i]} to"
4279	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4280	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
4281	else
4282	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
4283	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4284	mkdir $tmp_data_catalog/${frelout[$i]}
4285	cd ${localout[$i]}
4286	for file in $(ls *)
4287	do
4288	ln -f $file $tmp_data_catalog/${frelout[$i]}
4289	done
4290	cd $TEMPDIR
4291	fi
4292
4293
4294	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
4295	if [[ $store_on_archive_system = true ]]
4296	then
4297
4298	if [[ $archive_system = asterix ]]
4299	then
4300	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4301	if [[ $files_for_pes = false ]]
4302	then
4303	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4304	else
4305	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4306	fi
4307	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4308	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
4309	echo "then" >> archive_${frelout[$i]}
4310	echo " do_stageout=false" >> archive_${frelout[$i]}
4311	echo "else" >> archive_${frelout[$i]}
4312	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
4313	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
4314	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
4315	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
4316	if [[ $files_for_pes = false ]]
4317	then
4318	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
4319	else
4320	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
4321	fi
4322	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
4323	echo "fi" >> archive_${frelout[$i]}
4324	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4325	elif [[ $archive_system = DMF ]]
4326	then
4327	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4328	if [[ $files_for_pes = false ]]
4329	then
4330	printf "\n +++ archiving of single files impossible with $archive_system !\n"
4331	locat=DMF
4332	exit
4333	else
4334	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
4335	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
4336	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
4337	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
4338	fi
4339	elif [[ $archive_system = tivoli ]]
4340	then
4341	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4342	if [[ $files_for_pes = false ]]
4343	then
4344	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4345	echo "set -x" >> archive_${frelout[$i]}
4346	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4347	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4348	else
4349
4350	echo "set -x" >> archive_${frelout[$i]}
4351	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
4352	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4353	cd $tmp_data_catalog
4354	all_files=`ls -1 ${frelout[$i]}/*`
4355	cd - > /dev/null
4356	(( inode = 0 ))
4357	(( tp1 = tasks_per_node + 1 ))
4358	while (( inode < nodes ))
4359	do
4360	# echo "*** all_files = \"$all_files\" "
4361	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4362	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4363	# echo "*** tasks_per_node = \"$tasks_per_node\" "
4364	# echo "*** files = \"$files\" "
4365	# echo "*** all_files = \"$all_files\" "
4366	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4367	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4368	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
4369	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4370	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4371	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4372	(( inode = inode + 1 ))
4373	done
4374	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4375	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4376	fi
4377	elif [[ $archive_system = ut ]]
4378	then
4379	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4380	if [[ $files_for_pes = false ]]
4381	then
4382	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4383	echo "set -x" >> archive_${frelout[$i]}
4384	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4385	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4386	else
4387
4388	echo "set -x" >> archive_${frelout[$i]}
4389	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
4390	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
4391	cd $tmp_data_catalog
4392	all_files=`ls -1 ${frelout[$i]}/*`
4393	cd - > /dev/null
4394	(( inode = 0 ))
4395	(( tp1 = tasks_per_node + 1 ))
4396	while (( inode < nodes ))
4397	do
4398	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4399	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4400	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4401	(( inode = inode + 1 ))
4402	done
4403	fi
4404	elif [[ $archive_system = none ]]
4405	then
4406	printf " +++ archiving on $localhost not available!\n"
4407	fi
4408
4409	if [[ $archive_system != none ]]
4410	then
4411	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
4412	then
4413	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4414	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4415	elif [[ $localhost = nech ]]
4416	then
4417	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
4418	fi
4419	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4420	fi
4421	else
4422	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
4423	fi
4424
4425
4426	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
4427	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4428	if [[ $files_for_pes = false ]]
4429	then
4430	cat /dev/null > ${pathout[$i]}
4431	else
4432	mkdir -p ${pathout[$i]}
4433	fi
4434
4435	fi
4436
4437
4438	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
4439	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
4440	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4441	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
4442	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
4443	# GEMAESSEN ARCHIVIERUNGEN GESETZT
4444	if [[ "${actionout[$i]}" = ar ]]
4445	then
4446	if [[ $files_for_pes = false ]]
4447	then
4448	printf "\n >>> OUTPUT: ${localout[$i]} to"
4449	printf "\n ${pathout[$i]}"
4450	printf "\n File will be copied to archive-system ($archive_system) !\n"
4451	else
4452	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
4453	printf "\n ${pathout[$i]}"
4454	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
4455	fi
4456	mv ${localout[$i]} ${frelout[$i]}
4457
4458	file_saved=false
4459
4460	if [[ $archive_system = asterix ]]
4461	then
4462	do_stageout=true
4463	(( stageout_anz = 0 ))
4464	while [[ $do_stageout = true ]]
4465	do
4466	if [[ $files_for_pes = false ]]
4467	then
4468	stageout ${frelout[$i]} > STAGE_OUTPUT
4469	else
4470	stageout -t ${frelout[$i]} > STAGE_OUTPUT
4471	fi
4472	cat STAGE_OUTPUT
4473	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
4474	then
4475	file_saved=true
4476	do_stageout=false
4477	else
4478	if [[ $files_for_pes = false ]]
4479	then
4480	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
4481	else
4482	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
4483	fi
4484	(( stageout_anz = stageout_anz + 1 ))
4485	if (( stageout_anz == 10 ))
4486	then
4487	printf "\n +++ stoped after 10 unsuccessful tries!"
4488	archive_save=false
4489	do_stageout=false
4490	else
4491	printf "\n *** new try to store on archive after 15 min:"
4492	sleep 900
4493	fi
4494	fi
4495	done
4496	elif [[ $archive_system = DMF ]]
4497	then
4498	if [[ $files_for_pes = false ]]
4499	then
4500	printf "\n +++ archiving of single files impossible on $archive_system!\n"
4501	locat=DMF
4502	exit
4503	else
4504	rm -rf $ARCHIVE/${frelout[$i]}
4505	cp -r ${frelout[$i]} $ARCHIVE
4506	fi
4507	file_saved=true
4508	elif [[ $archive_system = tivoli ]]
4509	then
4510	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4511	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4512	# GELEGT WERDEN
4513	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4514	chmod g+rx $tmp_data_catalog
4515	if [[ $files_for_pes = false ]]
4516	then
4517	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4518	else
4519	mkdir $tmp_data_catalog/${frelout[$i]}
4520	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4521	fi
4522
4523	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4524	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4525	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4526	if [[ $files_for_pes = false ]]
4527	then
4528	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4529	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4530	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4531	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4532	else
4533	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4534	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4535	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4536	fi
4537
4538	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4539	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4540	file_saved=true
4541
4542	elif [[ $archive_system = ut ]]
4543	then
4544	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4545	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4546	# GELEGT WERDEN
4547	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4548	chmod g+rx $tmp_data_catalog
4549	if [[ $files_for_pes = false ]]
4550	then
4551	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4552	else
4553	mkdir $tmp_data_catalog/${frelout[$i]}
4554	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4555	fi
4556
4557	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4558	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4559	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4560	if [[ $files_for_pes = false ]]
4561	then
4562	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4563	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4564	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4565	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4566	else
4567	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4568	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4569	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4570	fi
4571
4572	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
4573	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4574	file_saved=true
4575
4576	else
4577	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
4578	archive_save=false
4579	fi
4580	if [[ $file_saved = true ]]
4581	then
4582	if [[ $files_for_pes = false ]]
4583	then
4584	cat /dev/null > ${pathout[$i]}
4585	else
4586	mkdir -p ${pathout[$i]}
4587	fi
4588	fi
4589	fi
4590
4591	# APPEND AUF LOKALER MASCHINE
4592	if [[ "${actionout[$i]}" = "a" ]]
4593	then
4594	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4595	then
4596	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}.${extout[$i]}\n"
4597	cat ${localout[$i]} >> ${pathout[$i]}.${extout[$i]}
4598	else
4599	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
4600	cat ${localout[$i]} >> ${pathout[$i]}
4601	fi
4602	fi
4603
4604	# KOPIEREN AUF LOKALER MASCHINE
4605	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
4606	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
4607	then
4608
4609	# KOPIEREN AUF EINPROZESSORMASCHINE
4610	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4611	then
4612	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
4613	if [[ $link_local_output = true ]]
4614	then
4615	printf " using ln -f\n"
4616	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4617	fi
4618	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4619	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
4620	then
4621	if [[ $link_local_output = true ]]
4622	then
4623	printf " ln failed, using cp...\n"
4624	fi
4625	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4626	fi
4627	else
4628	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
4629	if [[ $link_local_output = true ]]
4630	then
4631	printf " using ln -f\n"
4632	ln -f ${localout[$i]} ${pathout[$i]}
4633	fi
4634	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4635	if [[ ! -f "${pathout[$i]}" ]]
4636	then
4637	if [[ $link_local_output = true ]]
4638	then
4639	printf " ln failed, using cp...\n"
4640	fi
4641	cp ${localout[$i]} ${pathout[$i]}
4642	fi
4643	fi
4644
4645	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
4646	then
4647
4648	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
4649	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
4650	# WIRD DANN KOPIERT
4651	# PER MOVE UMBENANNT WERDEN
4652	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4653	if [[ $link_local_output = true ]]
4654	then
4655	printf " using ln -f\n"
4656	mkdir ${pathout[$i]}
4657	cd ${localout[$i]}
4658	for file in $(ls *)
4659	do
4660	ln -f $file ${pathout[$i]}
4661	done
4662	cd $TEMPDIR
4663	fi
4664	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4665	if [[ ! -f "${pathout[$i]}/_0000" ]]
4666	then
4667	if [[ $link_local_output = true ]]
4668	then
4669	printf " ln failed for .../_0000, using cp...\n"
4670	fi
4671	cp -r ${localout[$i]} ${pathout[$i]}
4672	fi
4673
4674	fi
4675	fi
4676	done
4677	if (( i != 0 ))
4678	then
4679	if [[ $transfer_problems = true ]]
4680	then
4681	printf "\n$striche\n *** OUTPUT-files saved"
4682	printf "\n +++ WARNING: some data transfers failed! \n"
4683	else
4684	printf "\n$striche\n *** all OUTPUT-files saved \n"
4685	fi
4686	fi
4687
4688
4689	# EVENTUELL FOLGEJOB STARTEN
4690	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4691	if [[ -f CONTINUE_RUN ]]
4692	then
4693
4694	if [[ $archive_save = true ]]
4695	then
4696
4697	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4698	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4699	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4700	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4701	# HANDEN
4702	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4703	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4704	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4705	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4706	then
4707	mc=`echo $mc \| sed 's/#/f/g'`
4708	fi
4709
4710
4711	# JOB STARTEN
4712	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4713	echo " $mc"
4714	printf "\n$striche\n"
4715	if [[ $localhost != $fromhost ]]
4716	then
4717
4718	if [[ $localhost = lcsgih \|\| $localhost = lccrayb \|\| $localhost = lccrayh \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibms \|\| $localhost = lcflow \|\| $localhost = lckyu* ]]
4719	then
4720	echo "*** ssh will be used to initiate restart-runs!"
4721	echo " return_addres=\"$return_addres\" "
4722	echo " return_username=\"$return_username\" "
4723	if [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4724	then
4725	if [[ $localhost = ibmh ]]
4726	then
4727	ssh $SSH_PORTOPT $usern@136.172.40.15 "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4728	elif [[ $localhost = lccrayb ]]
4729	then
4730	ssh $usern@blogin1 "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4731	elif [[ $localhost = lccrayh ]]
4732	then
4733	ssh $usern@hlogin1 "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4734
4735	else
4736	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4737	fi
4738	else
4739	if [[ $localhost = ibmkisti ]]
4740	then
4741	ssh $SSH_PORTOPT $usern@gaiad "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4742	elif [[ $localhost = lcflow ]]
4743	then
4744	/usr/bin/ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4745	elif [[ $localhost = lccrayb ]]
4746	then
4747	ssh $usern@blogin1 "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4748	elif [[ $localhost = lccrayh ]]
4749	then
4750	ssh $usern@130.75.4.1 "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4751	else
4752	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4753	fi
4754	fi
4755	else
4756	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4757	locat=restart; exit
4758	fi
4759
4760	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4761	# DER AKTUELLE JOB ENDET
4762	if [[ $queue = special1q ]]
4763	then
4764	sleep 120
4765	else
4766	sleep 30
4767	fi
4768
4769	else
4770
4771	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4772	# RUFEN WERDEN, AUSSER AUF lcfimm
4773	cd $LOCAL_PWD
4774	if [[ $localhost = lcfimm ]]
4775	then
4776	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4777	elif [[ $localhost = lckyuh ]]
4778	then
4779	printf "\n +++ WARNING: no restart mechanism available for host \"$localhost\" "
4780	printf "\n please restart job manually using command:\n"
4781	printf "\n \"$mc\" "
4782	else
4783	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4784	fi
4785	cd - > /dev/null
4786	fi
4787	if [[ $localhost = lckyuh ]]
4788	then
4789	printf "\n$striche\n *** restart-run to be initiated manually\n"
4790	else
4791	printf "\n$striche\n *** restart-run initiated \n"
4792	fi
4793
4794
4795	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4796	# GEHOLT WORDEN SIND, LOESCHEN
4797	(( i = 0 ))
4798	while (( i < iin ))
4799	do
4800	(( i = i + 1 ))
4801	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4802	then
4803	rm -r $tmp_data_catalog/${frelin[$i]}
4804	fi
4805	done
4806
4807	else
4808
4809	printf "\n +++ no restart-run possible, since errors occured"
4810	printf "\n during the archive process"
4811	fi
4812
4813	fi
4814
4815
4816
4817	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4818	if [[ "$email_notification" != "none" ]]
4819	then
4820
4821	if [[ $localhost != $fromhost ]]
4822	then
4823	if [[ -f CONTINUE_RUN ]]
4824	then
4825	echo "PALM restart run necessary" > email_text
4826	echo "description header of actual run:" >> email_text
4827	cat CONTINUE_RUN >> email_text
4828	echo "mrun-command to restart:" >> email_text
4829	echo "$mc" >> email_text
4830	else
4831	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4832	fi
4833	mail $email_notification < email_text
4834	printf "\n *** email notification sent to \"$email_notification\" "
4835	fi
4836	fi
4837
4838
4839
4840	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4841	cd $HOME
4842	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4843
4844	else
4845
4846
4847	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4848	# CHENDE AKTIONEN DURCHGEFUEHRT
4849
4850	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4851	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
4852	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4853	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4854	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4855	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4856	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4857	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4858	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4859	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4860	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4861	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4862	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4863	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4864	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4865	if [[ $use_openmp = true ]]
4866	then
4867	mrun_com=${mrun_com}" -O $threads_per_task"
4868	fi
4869	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4870	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
4871	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4872	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4873	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4874	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4875	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4876	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4877	[[ "$check_namelist_files" = false ]] && mrun_com=${mrun_com}" -z"
4878	[[ "$combine_plot_fields" = false ]] && mrun_com=${mrun_com}" -Z"
4879	[[ "$max_par_io_str" != "" ]] && mrun_com=${mrun_com}" -w $max_par_io_str"
4880	if [[ $do_remote = true ]]
4881	then
4882	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4883	fi
4884
4885
4886	# create executable for batch job
4887	if [[ $create_executable_for_batch = true && $restart_run != true ]]
4888	then
4889
4890	printf "\n *** creating the executable for batch job\n"
4891
4892	# method only works for batch jobs on local hosts
4893	if [[ $host != $localhost ]]
4894	then
4895	printf "\n +++ creation of executables is only allowed for batch jobs on local hosts."
4896	printf "\n Please set create_executable_for_batch = false in the config-file.\n"
4897	locat=create_executable; exit
4898	fi
4899
4900	mkdir $working_directory/SOURCES_FOR_RUN_${fname}/TMPDIR_FOR_CREATING_EXECUTABLE
4901	cd $working_directory/SOURCES_FOR_RUN_${fname}/TMPDIR_FOR_CREATING_EXECUTABLE
4902
4903	cp $make_depository .
4904	tar -xf $make_depository > /dev/null 2>&1
4905	cp ../* . > /dev/null 2>&1
4906
4907	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
4908
4909	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
4910	then
4911	printf "\n +++ error occured while compiling or linking"
4912	locat=compile
4913	exit
4914	fi
4915
4916	mv a.out ..
4917	cd - > /dev/null 2>&1
4918	rm -rf $working_directory/SOURCES_FOR_RUN_${fname}/TMPDIR_FOR_CREATING_EXECUTABLE
4919
4920	printf " *** executable created in \"$working_directory/SOURCES_FOR_RUN_${fname}\"\n "
4921
4922	fi
4923
4924
4925	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4926	jobfile=jobfile.$RANDOM
4927
4928
4929	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4930	echo "mkdir $TEMPDIR" >> $jobfile
4931	echo "cd $TEMPDIR" >> $jobfile
4932
4933
4934	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4935	if [[ $do_trace = true ]]
4936	then
4937	echo "set -x" >> $jobfile
4938	else
4939	echo "set +vx" >> $jobfile
4940	fi
4941
4942
4943	# initialize the environment and load modules
4944	if [[ "$init_cmds" != "" ]]
4945	then
4946	echo "$init_cmds" >> $jobfile
4947	fi
4948	if [[ "$module_calls" != "" ]]
4949	then
4950	echo "$module_calls" >> $jobfile
4951	fi
4952
4953
4954	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4955	# DATEI FUER DEN JOB
4956	if [[ $( echo $host \| cut -c1-5 ) = lcsgi \|\| $host = ibmkisti \|\| $host = lccrayb \|\| $host = lccrayf \|\| $host = lccrayh ]]
4957	then
4958
4959	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4960	# KOPIEREN
4961	if [[ $restart_run != true ]]
4962	then
4963	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4964	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4965	fi
4966
4967	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4968	# (BEI JOBS AUF LOKALEM RECHNER REICHT CP)
4969	echo "set -x" >> $jobfile
4970	if [[ $host = $localhost ]]
4971	then
4972
4973	# DUE TO UNKNOWN REASONS, COPY WITH cp COMMAND CREATES CORRUPT
4974	# FILES ON CRAY XC30 SYSTEMS (CSC HELSINKI), rsync IS USED INSTEAD
4975	echo "rsync -av -t $working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4976
4977	else
4978	if [[ $host = ibmkisti ]]
4979	then
4980	# on KISTI's IBM firewall is only opened on interactive node
4981	echo "localdir=\`pwd\`" >> $jobfile
4982	echo "ssh $SSH_PORTOPT $remote_username@gaiad \"cd \$localdir; scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
4983	elif [[ $host = lccrayb ]]
4984	then
4985	echo "localdir=\`pwd\`" >> $jobfile
4986	echo "ssh $SSH_PORTOPT $remote_username@blogin1 \"cd \$localdir; scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
4987	elif [[ $host = lccrayh ]]
4988	then
4989	echo "localdir=\`pwd\`" >> $jobfile
4990	echo "ssh $SSH_PORTOPT $remote_username@hlogin1 \"cd \$localdir; scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
4991
4992	else
4993	echo "scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4994	fi
4995	fi
4996	echo "export SOURCES_COMPLETE=true" >> $jobfile
4997
4998	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4999	# ARBEITSVERZEICHNIS VERSCHIEBEN
5000	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
5001	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
5002	echo "chmod u+rwx $mrun_script_name" >> $jobfile
5003	echo "execute_mrun=true" >> $jobfile
5004	echo " " >> $jobfile
5005
5006	else
5007
5008	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
5009	# SOWIE GEGEBENENFALLS DES MAKEFILES
5010	if [[ $do_compile = true ]]
5011	then
5012
5013	source_catalog=SOURCES_FOR_RUN_$fname
5014
5015	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
5016	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
5017	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
5018	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
5019	echo "export SOURCES_COMPLETE=true" >> $jobfile
5020	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
5021
5022	for filename in $source_list
5023	do
5024	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
5025	echo "cat > $filename << \"%END%\"" >> $jobfile
5026	cat $source_catalog/$filename >> $jobfile
5027	echo " " >> $jobfile
5028	echo "%END%" >> $jobfile
5029	echo " " >> $jobfile
5030	done
5031
5032	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
5033	echo "cat > Makefile << \"%END%\"" >> $jobfile
5034	cat $source_catalog/Makefile >> $jobfile
5035	echo " " >> $jobfile
5036	echo "%END%" >> $jobfile
5037	echo " " >> $jobfile
5038
5039	echo "cd - > /dev/null" >> $jobfile
5040
5041	fi
5042
5043
5044	# ABSPEICHERN DER KONFIGURATIONSDATEI
5045	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
5046	# Lines with #$ coming from the svn keyword substitution are
5047	# removed from the config file in order to avoid problems
5048	# with the SGE batch system
5049	echo "cat > $config_file << \"%END%\"" >> $jobfile
5050	if [[ $host = lckyuh ]]
5051	then
5052	# no cross compiler on compute node
5053	sed 's/frtpx/frt/g' $config_file >> $jobfile
5054	else
5055	sed 's/#$.*//g' $config_file >> $jobfile
5056	fi
5057	echo "%END%" >> $jobfile
5058	echo " " >> $jobfile
5059
5060
5061	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
5062	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
5063	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
5064	if [[ $host = lckyuh ]]
5065	then
5066	sed 's/\/bin\/ksh/\/bin\/bash/g' ${PALM_BIN}/$mrun_script_name >> $jobfile
5067	else
5068	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
5069	fi
5070	echo "%END%" >> $jobfile
5071	echo "chmod u+x $mrun_script_name" >> $jobfile
5072	echo "execute_mrun=true" >> $jobfile
5073	echo " " >> $jobfile
5074
5075	fi
5076
5077
5078	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
5079	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
5080	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
5081	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
5082	if [[ $do_remote = true ]]
5083	then
5084	(( i = 0 ))
5085	while (( i < iin ))
5086	do
5087	(( i = i + 1 ))
5088	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
5089	if [[ "${transin[$i]}" = job ]]
5090	then
5091	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
5092	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
5093	echo " " >> $jobfile
5094	echo "%END%" >> $jobfile
5095	else
5096	echo "batch_scp $PORTOPT -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
5097	fi
5098
5099	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
5100	echo "if [[ \$? = 1 ]]" >> $jobfile
5101	echo "then" >> $jobfile
5102	echo " echo \" \" " >> $jobfile
5103	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
5104	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
5105	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
5106	echo " execute_mrun=false" >> $jobfile
5107	echo "fi" >> $jobfile
5108	done
5109	fi
5110
5111	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
5112	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
5113	echo "LOCAL_PWD=$working_directory" >> $jobfile
5114	echo "export LOCAL_PWD" >> $jobfile
5115
5116	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
5117	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
5118	echo "export LOCAL_MRUN_PATH" >> $jobfile
5119
5120	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
5121	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
5122	then
5123	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
5124	elif [[ $host = lcflow \|\| $localhost = lcflow ]]
5125	then
5126	echo "export PALM_BIN=$PALM_BIN" \| sed -e 's:'$HOME':$HOME:' >> $jobfile
5127	echo "export PATH=\$PATH:\$PALM_BIN" >> $jobfile
5128	fi
5129
5130	# MRUN AUF ZIELRECHNER AUFRUFEN (queue is workaround for ibmkisti)
5131	echo "set -x" >> $jobfile
5132	echo "queue=$queue" >> $jobfile
5133	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
5134	echo 'ls -al; echo `pwd`' >> $jobfile
5135	echo "cd \$HOME" >> $jobfile
5136	echo "rm -rf $TEMPDIR" >> $jobfile
5137
5138
5139
5140
5141	# JOB PER SUBJOB STARTEN
5142	if [[ $silent = false ]]
5143	then
5144	printf "\n "
5145	else
5146	printf "\n\n"
5147	fi
5148
5149	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $PORTOPT $jobfile
5150	rm -rf $jobfile
5151
5152
5153	fi # ENDE REMOTE-TEIL
5154
5155
5156
5157	# ENDE DER PROZEDUR

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