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source: palm/trunk/SCRIPTS/mrun @ 1225

Last change on this file since 1225 was 1225, checked in by raasch, 11 years ago
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1	#!/bin/ksh
2
3	# mrun - script for running PALM jobs
4
5	#--------------------------------------------------------------------------------#
6	# This file is part of PALM.
7	#
8	# PALM is free software: you can redistribute it and/or modify it under the terms
9	# of the GNU General Public License as published by the Free Software Foundation,
10	# either version 3 of the License, or (at your option) any later version.
11	#
12	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
13	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
14	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
15	#
16	# You should have received a copy of the GNU General Public License along with
17	# PALM. If not, see <http://www.gnu.org/licenses/>.
18	#
19	# Copyright 1997-2012 Leibniz University Hannover
20	#--------------------------------------------------------------------------------#
21	#
22	# Current revisions:
23	# ------------------
24	#
25	#
26	# Former revisions:
27	# -----------------
28	# $Id: mrun 1225 2013-09-16 07:33:10Z raasch $
29	#
30	# 1224 2013-09-16 07:27:23Z raasch
31	# first adjustments for lccrayb
32	#
33	# 1210 2013-08-14 10:58:20Z raasch
34	# fftw support added
35	#
36	# 1201 2013-07-10 16:17:59Z witha
37	# adjustments for Forwind cluster (lcflow)
38	#
39	# 1199 2013-07-05 14:52:22Z raasch
40	# adjustments for CSC Helsinki (lccrayf),
41	# executables for batch jobs can be created in advance, in order to avoid calling
42	# the compiler within the batch job (only works if batch jobs are submitted on
43	# local host)
44	#
45	# 1190 2013-06-25 09:39:21Z heinze
46	# enable use of automatic restarts for ibmh
47	# use of cluster/express queue enabled (ibmh)
48	#
49	# 1124 2013-04-09 15:46:52Z raasch
50	# variable "memory" is exported via typeset option -x, because otherwise an unknown
51	# side effect may lead to data loss while getopts is reading the script-option arguments
52	#
53	# 1122 2013-04-09 08:37:16Z heinze
54	# Bugfix: change type of variable last_char
55	#
56	# 1119 2013-04-05 15:11:19Z raasch
57	# Bugfix for setting -T option for subjob
58	#
59	# 1108 2013-03-05 07:03:32Z raasch
60	# bugfix for coupled runs on lckyut/lckyuh
61	#
62	# 1106 2013-03-04 05:31:38Z raasch
63	# --stdin argument for mpiexec on lckyuh
64	# -y and -Y settings output to header
65	#
66	# 1103 2013-02-20 02:15:53Z raasch
67	# default script runs again under ksh, because of unsolved problems with read
68	# from stdin: when bash script is called from a ksh, message "read error: 0:
69	# Resource temporarily unavailable" appears and script does not stop,
70	# further bash compatibility adjustments,
71	# shebang line replaced by /bin/bash when running jobs on lckyuh; no restarts
72	# on lckyuh, but mrun does not terminate and issues a warning instead
73	#
74	# 1101 2013-02-17 10:20:21Z raasch
75	# script now running under bash instead of ksh, which required small adjustments
76	# (output formatting with printf instead "typeset -L/-R", print replaced by echo,
77	# read from stdin),
78	# cross compilername on lckyuh compute nodes replaced by real compiler name
79	#
80	# 1099 2013-02-10 01:47:43Z raasch
81	# adjustments for Kyushu-University computing center (lckyuh - hayaka)
82	# and for Forwind cluster (lcflow)
83	# small further adjustments for lckyut
84	#
85	# 1094 2013-02-03 01:52:12Z raasch
86	# explicit ssh/scp port can be set in config file with environment variable
87	# scp_port. This port is handled to all ssh/scp/batch_scp calls.
88	# decalpha parts (yonsei) removed
89	#
90	# 2013-02-02 07:06:13Z raasch
91	# adjustments for Kyushu-University computing center (lckyut - tatara)
92	#
93	# 1083 2013-01-04 10:22:09Z maronga
94	# bugfix in parameter file check (read %cpp_options was missing)
95	#
96	# 1069 2012-11-28 16:18:43Z maronga
97	# bugfix: coupling mode was always set to mpi2, typos removed
98	#
99	# 1058 2012-11-21 07:00:35Z raasch
100	# Intel inspector (inspxe) is given the number of PEs instead of the number of
101	# nodes
102	#
103	# 1046 2012-11-09 14:38:45Z maronga
104	# code put under GPL (PALM 3.9)
105	#
106	# 21/03/94 - Siggi - first version finished
107	# 03/03/94 - Siggi - script development started
108	#
109	#--------------------------------------------------------------------------------#
110	# mrun - script for running PALM jobs
111	#--------------------------------------------------------------------------------#
112
113
114
115	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
116
117	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
118	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
119	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
120
121	AddFilenames=""
122	additional_conditions=""
123	add_source_path=""
124	afname=""
125	archive_save=true
126	archive_system=none
127	check_namelist_files=true
128	combine_plot_fields=true
129	compiler_name=""
130	cond1=""
131	cond2=""
132	config_file=.mrun.config
133	coupled_dist=""
134	coupled_mode="mpi1"
135	cpp_opts=""
136	cpp_options=""
137	cpumax=0
138	cpurest=0
139	create_executable_for_batch=false
140	delete_temporary_catalog=true
141	do_batch=false
142	do_compile=true
143	do_remote=false
144	do_stagein=true
145	do_stageout=true
146	do_trace=false
147	email_notification="none"
148	exclude=""
149	executable=""
150	execution_error=false
151	fftw_inc=""
152	fftw_lib=""
153	fftw_support=false
154	fimm=false
155	fname=test
156	fromhost=""
157	global_revision=""
158	group_number=none
159	host=""
160	host_file=""
161	hp=""
162	ignore_archive_error=false
163	input_list=""
164	interpreted_config_file=""
165	job_catalog="~/job_queue"
166	job_on_file=""
167	keep_data_from_previous_run=false
168	link_local_input=false
169	link_local_output=false
170	localhost_realname=$(hostname)
171	local_compile=false
172	local_dvrserver_running=.FALSE.
173	locat=normal
174	mainprog=""
175	makefile=""
176	max_par_io_str=""
177	mc=$0
178	while [[ $(echo $mc \| grep -c "/") != 0 ]]
179	do
180	mc=`echo $mc \| cut -f2- -d"/"`
181	done
182	module_calls=""
183	mrun_script_name=$mc
184	netcdf_inc=""
185	netcdf_lib=""
186	netcdf_support=false
187	node_usage=default
188	numprocs=""
189	numprocs_atmos=0
190	numprocs_ocean=0
191	OOPT=""
192	openmp=false
193	output_list=""
194	package_list=""
195	punkte="..........................................................."
196	queue=none
197	read_from_config=""
198	restart_run=false
199	if [[ `hostname` = rte10 ]]
200	then
201	return_addres=133.5.185.60
202	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
203	elif [[ `hostname` = climate0 ]]
204	then
205	return_addres=165.132.26.68
206	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
207	elif [[ `hostname` = urban00 ]]
208	then
209	return_addres=147.46.30.151
210	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
211	else
212	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
213	fi
214	return_password=""
215	return_username=$LOGNAME
216	remotecall=false
217	remote_username=""
218	run_coupled_model=false
219	run_mode=""
220	scirocco=false
221	store_on_archive_system=false
222	striche=" ----------------------------------------------------------------------------"
223	silent=false
224	source_list=""
225	source_path=SOURCE
226	tasks_per_node=""
227	threads_per_task=1
228	tmpcreate=false
229	tmp_data_catalog=""
230	transfer_problems=false
231	usern=$LOGNAME
232	use_openmp=false
233	version="MRUN 2.0 Rev$Rev: 1225 $"
234	working_directory=`pwd`
235	TOPT=""
236	XOPT=""
237	zeit=$( date \| cut -c 12-19 )
238
239	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 stagein_anz=0 stageout_anz=0
240	typeset -x -i memory=0 # has to be exported here, otherwise an unknown side
241	# effect may cause data loss when getopts is reading the
242	# script-option arguments
243	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek last_char_int maxcycle minuten nodes pes sekunden tp1
244
245
246
247
248	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
249	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
250
251	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
252	# EXPORTIERT WERDEN
253	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
254	export group_number input_list numprocs output_list queue run_mode
255
256
257
258	# FEHLERBEHANDLUNG
259	# BEI EXIT:
260	trap 'rm -rf $working_directory/tmp_mrun
261	if [[ $locat != localhost ]]
262	then
263	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
264	# then
265	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
266	#MRUN-calls on $localhost
267	#
268	#date and time user localhost remotehost termination mrun-command
269	#--------------------------------------------------------------------------------------------------------------------
270	#%STATEND%
271	# chmod 666 ${mrun_path}/statistik/mrun_statistik
272	# fi
273	#
274	# # EINTRAG IN DIE STATISTIK-DATEI
275	# string1=`date` #-L35
276	# string2=$usern #-L12
277	# string3=$localhost_realname #-L12
278	# string4=$host #-L12
279	# string5=$locat #-L12
280	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
281	# then
282	# if [[ $do_batch = true ]]
283	# then
284	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
285	# else
286	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
287	# fi
288	# fi
289	echo " " > /dev/null
290	fi
291
292	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
293	then
294
295	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
296	(( i = 0 ))
297	while (( i < iec ))
298	do
299	(( i = i + 1 ))
300	printf "\n *** Execution of ERROR-command:\n"
301	printf " >>> ${err_command[$i]}\n"
302	eval ${err_command[$i]}
303	done
304	if [[ -n $interpreted_config_file ]]
305	then
306	rm -rf $interpreted_config_file
307	fi
308	if [[ -n .mrun_environment ]]
309	then
310	rm -rf .mrun_environment
311	fi
312	if [[ $tmpcreate = true ]]
313	then
314	printf "\n *** Contents of \"$TEMPDIR\":\n"
315	ls -al; cd
316	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
317	fi
318	if [[ "$dvrserver_id" != "" ]]
319	then
320	echo "+++ killing dvrserver_id=$dvrserver_id"
321	kill $dvrserver_id
322	fi
323	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
324	then
325	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
326	fi
327	printf "\n\n+++ MRUN killed \n\n"
328	elif [[ $locat != control_c ]]
329	then
330	printf "\n\n --> all actions finished\n\n"
331	printf " Bye, bye $usern !!\n\n"
332	fi' exit
333
334
335	# BEI TERMINAL-BREAK:
336	trap 'rm -rf $working_directory/tmp_mrun
337	rm -rf $working_directory/tmp_check_namelist_files
338	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
339	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
340	then
341	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
342	fi
343	if [[ "$dvrserver_id" != "" ]]
344	then
345	echo "+++ killing dvrserver_id=$dvrserver_id"
346	kill $dvrserver_id
347	fi
348	printf "\n+++ MRUN killed by \"^C\" \n\n"
349	locat=control_c
350	exit
351	' 2
352
353
354	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
355	# BEEN SET
356	if [[ "$PALM_BIN" = "" ]]
357	then
358	printf "\n +++ environment variable PALM_BIN has not been set"
359	printf "\n please set it to the directory where the PALM scripts are located"
360	locat=palm_bin; exit
361	fi
362	export PATH=$PALM_BIN:$PATH
363
364
365
366	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
367	# FUER FOLGEJOBS BENOETIGT WIRD
368	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vw:xX:yY:zZ option
369	do
370	case $option in
371	(a) afname=$OPTARG;;
372	(A) store_on_archive_system=true; mc="$mc -A";;
373	(b) do_batch=true; mc="$mc -b";;
374	(B) delete_temporary_catalog=false; mc="$mc -B";;
375	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
376	(C) restart_run=true; mc="$mc -C";;
377	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
378	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
379	(F) job_on_file="-D"; mc="$mc -F";;
380	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
381	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
382	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
383	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
384	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
385	(I) ignore_archive_error=true; mc="$mc -I";;
386	(k) keep_data_from_previous_run=true; mc="$mc -k";;
387	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
388	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
389	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
390	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
391	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
392	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
393	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
394	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
395	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
396	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
397	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
398	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
399	(S) read_from_config=false; mc="$mc -S";;
400	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
401	(T) mrun_tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
402	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
403	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
404	(v) silent=true; mc="$mc -v";;
405	(w) max_par_io_str=$OPTARG; mc="$mc -w$OPTARG";;
406	(x) do_trace=true;set -x; mc="$mc -x";;
407	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
408	(y) ocean_file_appendix=true; mc="$mc -y";;
409	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
410	(z) check_namelist_files=false; mc="$mc -z";;
411	(Z) combine_plot_fields=false; mc="$mc -Z";;
412	(\?) printf "\n +++ unknown option $OPTARG \n"
413	printf "\n --> type \"$0 ?\" for available options \n"
414	locat=parameter;exit;;
415	esac
416	done
417
418
419	# EVTL. POSITIONSPARAMETER EINLESEN
420	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
421	(( to_shift = $OPTIND - 1 ))
422	shift $to_shift
423
424	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
425	if [[ "$1" = "?" ]]
426	then
427	(printf "\n *** mrun can be called as follows:\n"
428	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. -z -Z <modus> \n"
429	printf "\n Description of available options:\n"
430	printf "\n Option Description Default-Value"
431	printf "\n -a base name of input files equiv. -d"
432	printf "\n -A archiving when using file-attribute fl"
433	printf "\n -b batch-job on local machine ---"
434	printf "\n -B do not delete temporary directory at end ---"
435	printf "\n -c configuration file .mrun.config"
436	printf "\n -d base name of files attached to program test"
437	printf "\n -D preprocessor(cpp)-directives \"\" "
438	printf "\n -F create remote job file only ---"
439	printf "\n -h execution host $localhost_realname"
440	printf "\n -i INPUT control list \"\" "
441	printf "\n -I archiving errors of previous batch-jobs"
442	printf "\n will be ignored"
443	printf "\n -k keep data from previous run"
444	printf "\n -K additional conditions for controling"
445	printf "\n usage of conditional code and"
446	printf "\n env-variables in configuration file \"\" "
447	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
448	printf "\n -M Makefile name Makefile"
449	printf "\n -n node usage (shared/not_shared) depending on -h"
450	printf "\n -o OUTPUT control list \"\" "
451	printf "\n -O use OpenMP ---"
452	printf "\n -p software package list \"\" "
453	printf "\n -q queue \"$queue\" "
454	printf "\n -r run control list (combines -i -o) \"\" "
455	printf "\n -s filenames of routines to be compiled \"\" "
456	printf "\n must end with .f, .f90, .F, or .c !"
457	printf "\n use \"..\" for more than one file and wildcards"
458	printf "\n -s LM compiles all locally modified files"
459	printf "\n -S config file interpreted by shellscript ---"
460	printf "\n -t allowed cpu-time in seconds (batch) 0"
461	printf "\n -T tasks per node depending on -h"
462	printf "\n -u username on remote machine \"\" "
463	printf "\n -v no prompt for confirmation ---"
464	printf "\n -w maximum parallel io streams as given by -X"
465	printf "\n -x tracing of mrun for debug purposes ---"
466	printf "\n -X # of processors (on parallel machines) 1"
467	printf "\n -y add appendix \"_O\" to all local output"
468	printf "\n files (ocean precursor runs followed by"
469	printf "\n coupled atmosphere-ocean runs) ---"
470	printf "\n -Y run coupled model, \"#1 #2\" with"
471	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
472	printf "\n -z disable a priori parameter file check ---"
473	printf "\n -Z skip combine_plot_fields at the end of "
474	printf "\n the simulation ---"
475	printf "\n "
476	printf "\n Possible values of positional parameter <modus>:"
477	printf "\n \"?\" - this outline \n\n") \| more
478	exit
479	elif [[ "$1" != "" ]]
480	then
481	printf "\n +++ positional parameter $1 unknown \n"
482	locat=parameter; exit
483	fi
484
485
486
487	# KURZE STARTMELDUNG
488	printf "\n*** $version "
489	printf "\n will be executed. Please wait ..."
490
491
492
493	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
494	if [[ ! -f $config_file ]]
495	then
496	printf "\n\n +++ configuration file: "
497	printf "\n $config_file"
498	printf "\n does not exist"
499	locat=connect; exit
500	fi
501
502
503	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
504	line=""
505	grep "%host_identifier" $config_file > tmp_mrun
506	while read line
507	do
508	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
509	then
510	HOSTNAME=`echo $line \| cut -d" " -s -f2`
511	host_identifier=`echo $line \| cut -d" " -s -f3`
512	if [[ $localhost_realname = $HOSTNAME ]]
513	then
514	localhost=$host_identifier
515	break
516	fi
517	fi
518	done < tmp_mrun
519
520	if [[ "$localhost" = "" ]]
521	then
522	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
523	printf "\n for local host \"$localhost_realname\"."
524	printf "\n Please add line"
525	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
526	printf "\n to the configuration file."
527	locat=localhost; exit
528	fi
529
530
531	# HOSTSPEZIFISCHE VARIABLEN SETZEN
532	case $localhost_realname in
533	(r1\|r2\|h01\|b01) archive_system=tivoli;;
534	(cs*) archive_system=ut;;
535	(fimm.bccs.uib.no) fimm=true;;
536	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
537	(scirocco) scirocco=true;;
538	esac
539
540
541
542	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
543	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
544	[[ "$afname" = "" ]] && afname=$fname
545
546
547	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
548	if [[ "$run_mode" != "" ]]
549	then
550	input_list="$input_list $run_mode"
551	output_list="$output_list $run_mode"
552	fi
553
554
555	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
556	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
557	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
558	# STARTET)
559	if [[ "$fromhost" = "" ]]
560	then
561	fromhost=$localhost
562	fi
563
564
565	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
566	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
567	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
568	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
569	if [[ -n $host && "$host" != $localhost ]]
570	then
571	do_batch=true
572	do_remote=true
573	case $host in
574	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|nech\|necriam\|lccrayb\|lccrayf\|lcflow\|lckyoto\|lcsgib\|lcsgih\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
575	(*) printf "\n"
576	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
577	printf "\n is not available"
578	locat=nqs; (( iec = 0 )); exit;;
579	esac
580	else
581	host=$localhost
582	fi
583
584
585	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
586	if [[ -n $additional_conditions ]]
587	then
588	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
589	cond1=`echo $additional_conditions \| cut -d" " -f1`
590	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
591	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
592	if [[ -n $dummy ]]
593	then
594	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
595	locat=options; exit
596	fi
597	block=_$cond1
598	[[ -n $cond2 ]] && block=${block}_$cond2
599	fi
600
601
602	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
603	if [[ $run_coupled_model = true ]]
604	then
605
606	if [[ -n $coupled_dist ]]
607	then
608
609	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
610	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
611
612	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
613	then
614
615	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
616	printf "\n PEs (total) : $numprocs"
617	printf "\n PEs (atmosphere): $numprocs_atmos"
618	printf "\n PEs (ocean) : $numprocs_ocean"
619	locat=coupling; exit
620
621	fi
622
623	else
624
625	(( numprocs_ocean = $numprocs / 2 ))
626	(( numprocs_atmos = $numprocs / 2 ))
627
628	fi
629	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
630
631	# GET coupled_mode FROM THE CONFIG FILE
632	line=""
633	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
634	while read line
635	do
636	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && $(echo $line \| cut -d" " -s -f4) = $cond1 && $(echo $line \| cut -d" " -s -f4) = $cond2 ]]
637	then
638	coupled_mode="mpi2"
639	fi
640	done < tmp_mrun
641
642	fi
643
644
645	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
646	# ARCHIVIERUNG FEHLGESCHLAGEN IST
647	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
648	then
649	if [[ $ignore_archive_error = false ]]
650	then
651	printf "\n +++ data archiving of previous run failed"
652	printf "\n see directory \~/job_queue on remote machine"
653	locat=archive; exit
654	else
655	printf "\n +++ warning: data archiving in a previous run failed"
656	printf "\n MRUN continues, trying to get backup copy"
657	fi
658	fi
659
660
661	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
662	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
663	mrun_memory=$memory
664	mrun_group_number=$group_number
665	mrun_cpumax=$cpumax
666	mrun_numprocs=$numprocs
667
668
669	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
670	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
671	if [[ "$read_from_config" = false ]]
672	then
673
674	[[ $silent = false ]] && printf "\n Reading the configuration file... "
675	while read zeile
676	do
677	[[ $silent = false ]] && printf "."
678
679
680	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
681	# ERSETZEN
682	eval zeile=\"$zeile\"
683
684
685	# INTERPRETATION DER ZEILE
686	if [[ "$(echo $zeile)" = "" ]]
687	then
688	# LEERZEILE, KEINE AKTION
689	continue
690
691	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
692	then
693
694	# ZEILE IST KOMMENTARZEILE
695	true
696
697	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
698	then
699
700	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
701	zeile=$(echo $zeile \| cut -c2-)
702	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
703	var=`echo $zeile \| cut -d" " -f1`
704	value=`echo $zeile \| cut -d" " -s -f2`
705	for_host=`echo $zeile \| cut -d" " -s -f3`
706	for_cond1=`echo $zeile \| cut -d" " -s -f4`
707	for_cond2=`echo $zeile \| cut -d" " -s -f5`
708
709	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
710	then
711
712	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
713	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
714	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
715
716
717	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
718	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
719	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
720	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
721	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
722	# KONFIGURATIONSDATEI
723	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
724	then
725	eval $var=\$value
726
727	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
728	if [[ $do_trace = true ]]
729	then
730	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
731	fi
732	fi
733
734	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
735	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
736	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
737	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
738	if [[ $var = host ]]
739	then
740	if [[ -n $host && "$host" != $localhost ]]
741	then
742	do_batch=true
743	do_remote=true
744	case $host in
745	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lccrayb\|lccrayf\|lcflow\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
746	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
747	printf "\n is not available"
748	locat=nqs; exit;;
749	esac
750	else
751	host=$localhost
752	fi
753	fi
754
755	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
756	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
757	# DEN PROGRAMMEN BENOETIGT WERDEN
758	export $var
759	fi
760
761
762
763
764	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
765	then
766
767	# ZEILE DEFINIERT ERROR-KOMMANDO
768	(( iec = iec + 1 ))
769	zeile=$(echo $zeile \| cut -c4-)
770	err_command[$iec]="$zeile"
771
772	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
773	then
774
775	# ZEILE DEFINIERT INPUT-KOMMANDO
776	(( iic = iic + 1 ))
777	zeile=$(echo $zeile \| cut -c4-)
778	in_command[$iic]="$zeile"
779
780	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
781	then
782
783	# ZEILE DEFINIERT OUTPUT-KOMMANDO
784	(( ioc = ioc + 1 ))
785	zeile=$(echo $zeile \| cut -c4-)
786	out_command[$ioc]="$zeile"
787
788	else
789
790	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
791	# s2a: in/out - Feld
792	# s2b: loc - Feld (optional)
793	# s2c: tr/ar - Feld (optional)
794	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
795	s1=`echo $zeile \| cut -d" " -f1`
796	s2=`echo $zeile \| cut -d" " -s -f2`
797	s2a=$(echo $s2 \| cut -d":" -f1)
798	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
799	then
800	s2b=""
801	s2c=""
802	else
803	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
804	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
805	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
806	fi
807	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
808	s3=`echo $zeile \| cut -d" " -f3`
809	s4=`echo $zeile \| cut -d" " -s -f4`
810	s5=`echo $zeile \| cut -d" " -s -f5`
811	s6=`echo $zeile \| cut -d" " -s -f6`
812
813
814	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
815	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
816	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
817	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
818	# HANDEN SEIN MUSS (D.H. s2b = loc)
819	IFSALT="$IFS"; IFS="$IFS:"
820	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
821	then
822	found=false
823	for actual in $input_list
824	do
825	for formal in $s3
826	do
827	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
828	done
829	done
830	if [[ $found = true ]]
831	then
832	(( iin = iin + 1 ))
833	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
834	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
835	extin[$iin]=$s6
836	fi
837	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
838	then
839	found=false
840	for actual in $output_list
841	do
842	for formal in $s3
843	do
844	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
845	done
846	done
847	if [[ $found = true ]]
848	then
849	(( iout = iout + 1 ))
850	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
851	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
852	fi
853	elif [[ "$s2a" != in && "$s2a" != out ]]
854	then
855	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
856	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
857	locat=connect; exit
858	fi
859	IFS="$IFSALT"
860	fi
861	done < $config_file
862
863	else
864
865
866	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
867	[[ $silent = false ]] && printf "..."
868	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
869	export interpreted_config_file=.icf.$RANDOM
870
871
872
873	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
874	# VERFUEGUNG STELLEN
875	cat > .mrun_environment << %%END%%
876	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
877	config_file = '$config_file', do_remote = '$do_remote',
878	do_trace = '$do_trace', host = '$host',
879	input_list = '$input_list', icf = '$interpreted_config_file',
880	localhost = '$localhost', output_list = '$output_list' /
881
882	%%END%%
883
884	if [[ $localhost_realname = "sx-fep" ]]
885	then
886	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
887	else
888
889	if [[ "$host" != $localhost ]]
890	then
891
892	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
893	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
894	if [[ $? != 0 ]]
895	then
896	printf "\n\n +++ no interpret_config found"
897	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
898	locat=interpret_config; exit
899	fi
900	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
901	$interpret_config_executable
902
903	else
904
905	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
906	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
907	then
908	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
909	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
910	locat=interpret_config; exit
911	else
912	interpret_config${block}.x
913	fi
914
915	fi
916	fi
917	rm .mrun_environment
918
919
920	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
921	chmod u+x $interpreted_config_file
922	export PATH=$PATH:.
923	. $interpreted_config_file
924	rm $interpreted_config_file
925
926	fi
927
928
929	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
930	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
931	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
932	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
933	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
934	[[ "$max_par_io_str" != "" ]] && maximum_parallel_io_streams=$max_par_io_str
935	[[ "$mrun_tasks_per_node" != "" ]] && tasks_per_node=$mrun_tasks_per_node
936
937
938	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
939	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
940	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
941	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
942	if [[ "$SOURCES_COMPLETE" = "" ]]
943	then
944
945	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
946	# VEREINBART WURDE
947	source_path=""
948	line=""
949	grep "%source_path" $config_file > tmp_mrun
950	while read line
951	do
952	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
953	then
954	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
955	then
956	global_source_path=`echo $line \| cut -d" " -f2`
957	fi
958	fi
959	done < tmp_mrun
960
961	line=""
962	found=false
963	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
964	while read line
965	do
966	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
967	then
968	if [[ $found = true ]]
969	then
970	printf "\n\n +++ more than one source path found in configuration file"
971	printf "\n for local host \"$localhost\" "
972	locat=source_path; exit
973	fi
974	source_path=`echo $line \| cut -d" " -f2`
975	found=true
976	fi
977	done < tmp_mrun
978	rm tmp_mrun
979
980	if [[ "$source_path" = "" ]]
981	then
982	if [[ "$global_source_path" != "" ]]
983	then
984	source_path=$global_source_path
985	else
986	printf "\n\n +++ no source path found in configuration file"
987	printf "\n for local host \"$localhost\" "
988	locat=source_path; exit
989	fi
990	fi
991	eval source_path=$source_path
992
993	if [[ ! -d $source_path ]]
994	then
995	printf "\n\n +++ source path \"$source_path\" on local host"
996	printf "\n \"$localhost\" does not exist"
997	locat=source_path; exit
998	fi
999
1000	fi
1001
1002
1003	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
1004	# DURCH OPTION -G MITGETEILT)
1005	if [[ "$global_revision" = "" && $host != "ibmkisti" ]]
1006	then
1007	global_revision=`svnversion $source_path 2>/dev/null`
1008	global_revision="Rev: $global_revision"
1009	fi
1010
1011
1012	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
1013	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
1014	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
1015	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
1016	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
1017	if [[ -n $host && "$host" != $localhost ]]
1018	then
1019	do_batch=true
1020	do_remote=true
1021	case $host in
1022	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lccrayb\|lccrayf\|lcflow\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
1023	(*) printf "\n"
1024	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
1025	printf "\n is not available"
1026	locat=nqs; (( iec = 0 )); exit;;
1027	esac
1028	else
1029	host=$localhost
1030	fi
1031
1032
1033	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
1034	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1035	then
1036
1037	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
1038	if [[ ! -n $numprocs ]]
1039	then
1040	printf "\n"
1041	printf "\n +++ option \"-K parallel\" requires additional specification"
1042	printf "\n of the number of processors to be used by"
1043	printf "\n mrun-option \"-X\" or by environment-variable"
1044	printf "\n \"numprocs\" in the configuration file"
1045	locat=numprocs; (( iec = 0 )); exit
1046	fi
1047
1048	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
1049	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
1050	# GESAMTPROZESSORANZAHL IST
1051	if [[ "$tasks_per_node" = "" && $host != lcflow && $host != lcxt5m ]]
1052	then
1053	printf "\n"
1054	printf "\n +++ option \"-T\" (tasks per node) is missing"
1055	printf "\n set -T option or define tasks_per_node in the config file"
1056	locat=tasks_per_node; (( iec = 0 )); exit
1057	fi
1058	if [[ $host != lcflow && $host != lcxt5m ]]
1059	then
1060	(( ival = $tasks_per_node ))
1061	(( pes = numprocs ))
1062	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1063	# then
1064	# (( pes = pes - 1 ))
1065	# fi
1066	(( ii = pes / ival ))
1067	if (( pes - ii * ival > 0 ))
1068	then
1069	printf "\n"
1070	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1071	printf "\n divisor of the total number of processors (option \"-X\")"
1072	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1073	locat=tasks_per_node; (( iec = 0 )); exit
1074	fi
1075	fi
1076
1077
1078	# IBMY HAT NUR EINEN KNOTEN
1079	if [[ $host = ibmy ]]
1080	then
1081	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1082	then
1083	printf "\n"
1084	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1085	printf "\n total number of processors (option \"-X\")"
1086	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1087	locat=tasks_per_node; (( iec = 0 )); exit
1088	fi
1089	fi
1090
1091
1092	# SETTINGS FOR SUBJOB-COMMAND
1093	OOPT="-O $threads_per_task"
1094
1095	# GESAMTZAHL DER KNOTEN BESTIMMEN
1096	if [[ "$tasks_per_node" != "" ]]
1097	then
1098	TOPT="-T $tasks_per_node"
1099	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1100	fi
1101
1102	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1103	# SETZEN
1104	if [[ $node_usage = default ]]
1105	then
1106	if [[ $host = ibms ]]
1107	then
1108	node_usage=shared
1109	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1110	then
1111	node_usage=singlejob
1112	else
1113	node_usage=not_shared
1114	fi
1115	fi
1116
1117	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
1118	then
1119	printf "\n"
1120	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1121	printf "\n \"shared\" or \"not_shared\""
1122	locat=tasks_per_node; (( iec = 0 )); exit
1123	fi
1124
1125	fi
1126
1127	# PRUEFEN, OB HOSTFILE EXISTIERT
1128	if [[ -n $hostfile ]]
1129	then
1130	if [[ ! -f $hostfile ]]
1131	then
1132	printf "\n"
1133	printf "\n +++ hostfile \"$hostfile\" does not exist"
1134	locat=hostfile; exit
1135	fi
1136	fi
1137
1138	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1139	if [[ $host = ibmy && $do_remote = false ]]
1140	then
1141	if [[ ! -f $HOME/.rhosts ]]
1142	then
1143	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1144	printf "\n\n *** file:"
1145	printf "\n $HOME/.rhosts"
1146	printf "\n was created\n"
1147	fi
1148	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1149	then
1150	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1151	printf "\n\n *** file:"
1152	printf "\n $HOME/.rhosts"
1153	printf "\n was extended by the name of the current host\n"
1154	fi
1155	fi
1156
1157
1158	# Set default value for the maximum number of parallel io streams
1159	if [[ "$maximum_parallel_io_streams" = "" ]]
1160	then
1161	maximum_parallel_io_streams=$numprocs
1162	fi
1163
1164
1165	# Set port number option for calls of ssh/scp, subjob and batch_scp scripts
1166	if [[ "$scp_port" != "" ]]
1167	then
1168	PORTOPT="-P $scp_port"
1169	SSH_PORTOPT="-p $scp_port"
1170	fi
1171
1172
1173	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1174	if [[ $queue = none ]]
1175	then
1176	case $host in
1177	(ibmh) queue=cluster;;
1178	(ibmkisti) queue=class.32plus;;
1179	(ibmy) queue=parallel;;
1180	(lckiaps) queue=normal;;
1181	(lckyoto) queue=ph;;
1182	(lckyuh) queue=fx-single;;
1183	(lckyut) queue=cx-single;;
1184	(lcsgib) queue=testq;;
1185	(lcsgih) queue=testq;;
1186	(lctit) queue=S;;
1187	(nech) queue=none;;
1188	(necriam) queue=SP;;
1189	(unics) queue=unics;;
1190	esac
1191	fi
1192
1193
1194	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1195	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1196	# ERMITTELN
1197	(( i = 0 ))
1198	while (( i < iin ))
1199	do
1200	(( i = i + 1 ))
1201	(( maxcycle = 0 ))
1202
1203	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1204	if [[ "${actionin[$i]}" = di ]]
1205	then
1206	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1207	# REM-MASCHINE AUSWERTEN
1208	eval filename=${pathin[$i]}/${endin[$i]}
1209	else
1210	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1211	# REM-MASCHINE AUSWERTEN
1212	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1213	fi
1214	eval pathname=${pathin[$i]}
1215
1216	# SAVE INPUT FILE NAME FOR PARAMETER FILE CHECK
1217	if [[ ("${transin[$i]}" = job) && (-f $filename) ]]
1218	then
1219	filename_input=$filename
1220	fi
1221
1222	# PRUEFEN AUF VORHANDENSEIN
1223	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1224	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1225	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1226	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1227	then
1228	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1229	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1230	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1231	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1232	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1233	if [[ "${transin[$i]}" != "locopt" ]]
1234	then
1235	printf "\n\n +++ INPUT-file: "
1236	if [[ "${extin[$i]}" = "" ]]
1237	then
1238	printf "\n $filename"
1239	else
1240	printf "\n $filename.${extin[$i]}"
1241	fi
1242	printf "\n does not exist\n"
1243	locat=input; exit
1244	else
1245	transin[$i]="unavailable"
1246	fi
1247	else
1248
1249	# ZYKLUSNUMMER FESTSTELLEN
1250	ls -1 -d $filename > filelist 2>/dev/null
1251	ls -1 -d $filename.* >> filelist 2>/dev/null
1252	while read zeile
1253	do
1254	cycle=$(echo $zeile \| cut -f2 -d".")
1255	if [[ "$cycle" = "$zeile" ]]
1256	then
1257	(( icycle = 0 ))
1258	elif [[ "$cycle" = "${extin[$i]}" ]]
1259	then
1260	(( icycle = 0 ))
1261	else
1262	(( icycle = $cycle ))
1263	fi
1264	if (( icycle > maxcycle ))
1265	then
1266	(( maxcycle = icycle ))
1267	file_to_be_used=$zeile
1268	fi
1269	done <filelist
1270	rm filelist
1271
1272	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1273	if (( maxcycle > 0 ))
1274	then
1275	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1276	then
1277	filename=${filename}.$maxcycle.${extin[$i]}
1278	else
1279	filename=${filename}.$maxcycle
1280	fi
1281	else
1282	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1283	then
1284	filename=${filename}.${extin[$i]}
1285	fi
1286	fi
1287
1288	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1289	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1290	absnamein[$i]=$filename
1291	if (( maxcycle > 0 ))
1292	then
1293	if [[ "${actionin[$i]}" = di ]]
1294	then
1295	frelin[$i]=${endin[$i]}.$maxcycle
1296	else
1297	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1298	fi
1299	else
1300	if [[ "${actionin[$i]}" = di ]]
1301	then
1302	frelin[$i]=${endin[$i]}
1303	else
1304	frelin[$i]=${afname}${endin[$i]}
1305	fi
1306	fi
1307
1308	fi
1309	done
1310
1311	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1312	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1313	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1314	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1315	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1316	(( i = 0 ))
1317	while (( i < iout ))
1318	do
1319	(( i = i + 1 ))
1320	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1321	then
1322	if [[ "${actionout[$i]}" = tr ]]
1323	then
1324	actionout[$i]=""
1325	elif [[ "${actionout[$i]}" = trpe ]]
1326	then
1327	actionout[$i]=pe
1328	elif [[ "${actionout[$i]}" = tra ]]
1329	then
1330	actionout[$i]=a
1331	fi
1332	(( maxcycle = 0 ))
1333	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1334	eval catalogname=${pathout[$i]}
1335	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1336	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1337	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1338	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1339	then
1340
1341	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1342	if cat /dev/null > $filename
1343	then
1344	rm $filename
1345	else
1346
1347	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1348	if [[ ! -d $catalogname ]]
1349	then
1350	if mkdir -p $catalogname
1351	then
1352	printf "\n\n *** directory:"
1353	printf "\n $catalogname"
1354	printf "\n was created\n"
1355	else
1356	printf "\n\n +++ OUTPUT-file:"
1357	printf "\n $filename"
1358	printf "\n cannot be created, because directory does not exist"
1359	printf "\n and cannot be created either"
1360	printf "\n"
1361	locat=output ; exit
1362	fi 2>/dev/null
1363	else
1364	printf "\n\n +++ OUTPUT-file:"
1365	printf "\n $filename"
1366	printf "\n cannot be created, although directory exists"
1367	printf "\n"
1368	locat=output ; exit
1369	fi
1370	fi 2>/dev/null
1371	else
1372
1373	# ZYKLUSNUMMER FESTSTELLEN
1374	ls -1 -d $filename > filelist 2>/dev/null
1375	ls -1 -d $filename.* >> filelist 2>/dev/null
1376	while read zeile
1377	do
1378	cycle=$(echo $zeile \| cut -f2 -d".")
1379	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1380	then
1381	(( icycle = 1 ))
1382	else
1383	(( icycle = $cycle + 1 ))
1384	fi
1385	if (( icycle > maxcycle ))
1386	then
1387	(( maxcycle = icycle ))
1388	fi
1389	done <filelist
1390	rm filelist
1391	fi
1392
1393	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1394	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1395	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1396	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1397	if [[ "${actionout[$i]}" != a ]]
1398	then
1399	if (( maxcycle > 0 ))
1400	then
1401	filename=${filename}.$maxcycle
1402	if cat /dev/null > $filename
1403	then
1404	rm $filename
1405	else
1406	printf "\n +++ OUTPUT-file:"
1407	printf "\n $filename"
1408	printf "\n cannot be created"
1409	locat=output ; exit
1410	fi
1411	fi
1412	else
1413	(( maxcycle = maxcycle - 1 ))
1414	if (( maxcycle > 0 ))
1415	then
1416	filename=${filename}.$maxcycle
1417	fi
1418	fi
1419
1420	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1421	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1422	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1423	pathout[$i]=$filename
1424	if (( maxcycle > 0 ))
1425	then
1426	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1427	else
1428	frelout[$i]=${fname}${endout[$i]}
1429	fi
1430
1431	fi
1432	done
1433
1434
1435	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1436	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1437	then
1438	if [[ "$dvr_inc" = "" ]]
1439	then
1440	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1441	printf "\n This is required for the dvrp_graphics package.\n"
1442	locat=dvr; exit
1443	fi
1444	if [[ "$dvr_lib" = "" ]]
1445	then
1446	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1447	printf "\n This is required for the dvrp_graphics package.\n"
1448	locat=dvr; exit
1449	fi
1450	fi
1451
1452
1453	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1454	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1455	# UEBERSETZT ZU WERDEN)
1456	if [[ "$mainprog" = "" && "$executable" = "" ]]
1457	then
1458	printf "\n +++ neither main program nor executable defined"
1459	locat=source; exit
1460	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1461	then
1462	printf "\n +++ main program as well as executable defined"
1463	locat=source; exit
1464	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1465	then
1466	do_compile=false
1467	fi
1468
1469
1470	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1471	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1472	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1473	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1474	then
1475	rm -rf SOURCES_FOR_RUN_$fname
1476	mkdir SOURCES_FOR_RUN_$fname
1477	fi
1478
1479
1480	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1481	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1482	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1483	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1484	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1485	then
1486
1487	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1488
1489	if [[ "$source_list" = LOCALLY_MODIFIED ]]
1490	then
1491
1492	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1493	source_list=""
1494	cd $source_path
1495
1496
1497	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1498	if [[ ! -d .svn ]]
1499	then
1500	printf "\n\n +++ source directory"
1501	printf "\n \"$source_path\" "
1502	printf "\n is not under control of \"subversion\"."
1503	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1504	fi
1505
1506
1507	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1508	Filenames=""
1509	svn status > tmp_mrun
1510	while read line
1511	do
1512	firstc=`echo $line \| cut -c1`
1513	if [[ $firstc = M \|\| $firstc = "?" ]]
1514	then
1515	Name=`echo "$line" \| cut -c8-`
1516	extension=`echo $Name \| cut -d. -f2`
1517	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1518	then
1519	Filenames="$Filenames "$Name
1520	fi
1521	fi
1522	done < tmp_mrun
1523
1524
1525	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1526	for dateiname in $Filenames
1527	do
1528	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1529	source_list=$source_list"$dateiname "
1530	done
1531
1532	cd - > /dev/null
1533
1534
1535	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1536	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1537	# VORHANDEN
1538	elif [[ "$source_list" != "" && $restart_run != true ]]
1539	then
1540
1541	cd $source_path
1542
1543	for filename in $source_list
1544	do
1545
1546	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1547	if [[ $(echo $filename \| grep -c "/") != 0 ]]
1548	then
1549	printf "\n +++ source code file: $filename"
1550	printf "\n must not contain (\"/\") "
1551	locat=source; exit
1552	fi
1553
1554	if [[ ! -f $filename ]]
1555	then
1556	printf "\n +++ source code file: $filename"
1557	printf "\n does not exist"
1558	locat=source; exit
1559	else
1560	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1561	fi
1562
1563	done
1564
1565	cd - > /dev/null
1566
1567	fi
1568
1569
1570	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1571	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1572	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1573	if [[ $restart_run != true ]]
1574	then
1575
1576	if [[ ! -f "$source_path/$mainprog" ]]
1577	then
1578	printf "\n\n +++ main program: $mainprog"
1579	printf "\n does not exist in source directory"
1580	printf "\n \"$source_path\"\n"
1581	locat=source; exit
1582	else
1583	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1584	then
1585	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1586	source_list=${mainprog}" $source_list"
1587	fi
1588	fi
1589	fi
1590
1591
1592	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1593	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1594	if [[ "$restart_run" != true ]]
1595	then
1596	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1597	if [[ ! -f $makefile ]]
1598	then
1599	printf "\n +++ file \"$makefile\" does not exist"
1600	locat=make; exit
1601	else
1602	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1603	fi
1604	fi
1605
1606
1607	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1608	if [[ $restart_run != true && "$add_source_path" != "" ]]
1609	then
1610
1611	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1612	if [[ ! -d $add_source_path ]]
1613	then
1614	printf "\n\n +++ WARNING: additional source code directory"
1615	printf "\n \"$add_source_path\" "
1616	printf "\n does not exist or is not a directory."
1617	printf "\n No source code will be used from this directory!\n"
1618	add_source_path=""
1619	if [[ $silent == false ]]
1620	then
1621	sleep 3
1622	fi
1623	else
1624
1625	cd $add_source_path
1626	found=false
1627
1628	Names=$(ls -1 *.f90 2>&1)
1629	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1630	Names=$(ls -1 *.F90 2>&1)
1631	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1632	Names=$(ls -1 *.F 2>&1)
1633	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1634	Names=$(ls -1 *.f 2>&1)
1635	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1636	Names=$(ls -1 *.c 2>&1)
1637	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1638
1639	cd - > /dev/null
1640	cd SOURCES_FOR_RUN_$fname
1641
1642	# COPY MAKEFILE IF EXISTING
1643	if [[ -f $add_source_path/Makefile ]]
1644	then
1645	printf "\n\n *** user Makefile from directory"
1646	printf "\n \"$add_source_path\" is used \n"
1647	if [[ $silent == false ]]
1648	then
1649	sleep 1
1650	fi
1651	cp $add_source_path/Makefile .
1652	fi
1653
1654	for dateiname in $AddFilenames
1655	do
1656	if [[ -f $dateiname ]]
1657	then
1658	printf "\n +++ source code file \"$dateiname\" found in additional"
1659	printf "\n source code directory \"$add_source_path\" "
1660	printf "\n but was also given with option \"-s\" which means that it should be taken"
1661	printf "\n from directory \"$source_path\"."
1662	locat=source; exit
1663	fi
1664
1665	cp $add_source_path/$dateiname .
1666	source_list="$source_list $dateiname"
1667
1668	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1669	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1670	then
1671	printf "\n\n +++ user file \"$dateiname\" "
1672	printf "\n is not listed in Makefile \n"
1673	locat=source; exit
1674	else
1675
1676	# Default User-Interface von der Liste entfernen, falls Datei
1677	# ein User-Interface enthaelt
1678	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1679	# then
1680	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1681	# then
1682	# rm -rf user_interface.f90
1683	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1684	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1685	# printf "\n since a user-interface is found in file"
1686	# printf "\n \"$add_source_path/$dateiname\" \n"
1687	# sleep 3
1688	# else
1689	if [[ $found = false ]]
1690	then
1691	found=true
1692	printf "\n\n *** following user file(s) added to the"
1693	printf " files to be translated:\n "
1694	fi
1695	printf "$dateiname "
1696	if [[ $silent == false ]]
1697	then
1698	sleep 0.5
1699	fi
1700
1701	fi
1702	done
1703	[[ $found = true ]] && printf "\n"
1704	cd - > /dev/null
1705	fi
1706	fi
1707
1708
1709	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1710	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1711	if [[ $restart_run != true && -n $package_list ]]
1712	then
1713
1714	cd $source_path
1715
1716	for package in $package_list
1717	do
1718
1719	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1720
1721	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1722	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1723	# LIEFERT
1724	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1725
1726
1727	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1728	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1729	for source_list_name in $package_source_list
1730	do
1731	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1732	then
1733
1734	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1735	ending=`echo $source_list_name \| cut -f2 -d.`
1736	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1737	then
1738	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1739	source_list="$source_list $source_list_name"
1740	fi
1741	fi
1742	done
1743	done
1744
1745	cd - > /dev/null
1746	fi
1747
1748
1749	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1750	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1751	# if [[ "$restart_run" != true ]]
1752	# then
1753	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1754	# if [[ ! -f $makefile ]]
1755	# then
1756	# printf "\n +++ file \"$makefile\" does not exist"
1757	# locat=make; exit
1758	# else
1759	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1760	# fi
1761	# fi
1762
1763	fi # do_compile=true
1764
1765
1766	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1767	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1768	if [[ $do_compile = true \|\| $create_executable_for_batch = true ]]
1769	then
1770
1771	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1772	# ZUSAMMENSETZEN
1773	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1774	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1775	then
1776	cpp_options="${cpp_options},-D__ibm=__ibm"
1777	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1778	then
1779	cpp_options="$cpp_options -D__nec"
1780	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1781	then
1782	cpp_options="$cpp_options -D__lc"
1783	else
1784	cpp_options="$cpp_options -D__$localhost"
1785	fi
1786
1787	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1788	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1789	then
1790	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1791	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1792	else
1793	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1794	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1795	fi
1796
1797	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1798	if [[ -n $package_list ]]
1799	then
1800	for package in $package_list
1801	do
1802	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1803	then
1804	if [[ $package != "dvrp_graphics+1PE" ]]
1805	then
1806	cpp_options="${cpp_options},-D__$package=__$package"
1807	else
1808	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1809	export use_seperate_pe_for_dvrp_output=true
1810	fi
1811	else
1812	if [[ $package != "dvrp_graphics+1PE" ]]
1813	then
1814	cpp_options="$cpp_options -D__$package"
1815	else
1816	cpp_options="$cpp_options -D__dvrp_graphics"
1817	export use_seperate_pe_for_dvrp_output=true
1818	fi
1819	fi
1820	done
1821	fi
1822
1823	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1824	if [[ -n $cpp_opts ]]
1825	then
1826	for popts in $cpp_opts
1827	do
1828	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1829	then
1830	cpp_options="${cpp_options},-D__$popts=__$popts"
1831	else
1832	cpp_options="$cpp_options -D__$popts"
1833	fi
1834	done
1835	fi
1836
1837	else
1838
1839
1840	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1841	if [[ $do_remote = false ]]
1842	then
1843	if [[ ! -f $executable ]]
1844	then
1845	printf "\n +++ executable file: $executable"
1846	printf "\n does not exist"
1847	locat=executable; exit
1848	fi
1849	fi
1850	fi
1851
1852
1853	# JOBMODUS FESTSTELLEN
1854	if [[ "$ENVIRONMENT" = BATCH ]]
1855	then
1856	jobmo=BATCH
1857	else
1858	jobmo=INTERACTIVE
1859	fi
1860
1861
1862	# no interactive runs on lctit
1863	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
1864	then
1865	printf "\n +++ no interactive runs allowed on host \"$host\" "
1866	printf "\n please submit batch job using mrun option \"-b\" \n"
1867	locat=normal; exit
1868	fi
1869
1870
1871	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1872	# DURCH BENUTZER ANDERWEITIG VEREINBART
1873	if [[ "$compiler_name" = "" ]]
1874	then
1875
1876	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
1877	locat=compiler_name; exit
1878
1879	fi
1880
1881
1882	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
1883	[[ $localhost = necriam ]] && compiler_name=mpif90
1884
1885
1886
1887	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
1888	kennung=$RANDOM
1889	if [[ "$tmp_user_catalog" = "" ]]
1890	then
1891	if [[ $localhost = ibmh ]]
1892	then
1893	tmp_user_catalog=$SCRATCH
1894	elif [[ $localhost = nech ]]
1895	then
1896	tmp_user_catalog=$WRKSHR
1897	else
1898	tmp_user_catalog=/tmp
1899	fi
1900	fi
1901	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
1902
1903
1904	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
1905	# BESTIMMEN
1906	if [[ "$tmp_data_catalog" = "" ]]
1907	then
1908	if [[ $localhost = nech ]]
1909	then
1910	tmp_data_catalog=$WRKSHR/mrun_restart_data
1911	else
1912	tmp_data_catalog=/tmp/mrun_restart_data
1913	fi
1914	fi
1915
1916
1917	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
1918	# ERSETZEN
1919	if [[ $do_remote = false && $do_compile = true \|\| $create_executable_for_batch = true ]]
1920	then
1921	eval fopts=\"$fopts\"
1922	eval lopts=\"$lopts\"
1923	fi
1924
1925
1926
1927	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
1928	fopts="$fopts $netcdf_inc $fftw_inc $dvr_inc"
1929	lopts="$lopts $netcdf_lib $fftw_lib $dvr_lib"
1930	ROPTS="$ropts"
1931	# if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcflow \|\| $host = lcxe6 \|\| $host = lcxt5m \|\| $host = lck \|\| $host = lckiaps \|\| $host = lckordi \|\| $host = lcsb \|\| $host ) && -n $numprocs ]]
1932	# then
1933	XOPT="-X $numprocs"
1934	# fi
1935
1936
1937
1938	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
1939	# GRAMM BENOETIGT
1940	done=false
1941	while [[ $done = false ]]
1942	do
1943	cputime=$cpumax
1944	if (( $cputime == 0 ))
1945	then
1946	if [[ $do_batch = true ]]
1947	then
1948	printf "\n +++ cpu-time is undefined"
1949	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
1950	printf "\n >>> "
1951	read cputime 1>/dev/null 2>&1
1952	else
1953	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
1954	fi
1955	else
1956	done=true
1957	fi
1958	cpumax=$cputime
1959	done
1960
1961	(( minuten = cputime / 60 ))
1962	(( sekunden = cputime - minuten * 60 ))
1963
1964
1965	# PRUEFEN DER KERNSPEICHERANFORDERUNG
1966	if [[ $do_batch = true ]]
1967	then
1968	done=false
1969	while [[ $done = false ]]
1970	do
1971	if (( memory == 0 ))
1972	then
1973	printf "\n +++ memory demand is undefined"
1974	printf "\n >>> Please type memory in MByte per process as INTEGER:"
1975	printf "\n >>> "
1976	read memory 1>/dev/null 2>&1
1977	else
1978	done=true
1979	fi
1980	done
1981	fi
1982
1983
1984	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
1985	if [[ $do_remote = true && -z $remote_username ]]
1986	then
1987	while [[ -z $remote_username ]]
1988	do
1989	printf "\n +++ username on remote host \"$host\" is undefined"
1990	printf "\n >>> Please type username:"
1991	printf "\n >>> "
1992	read remote_username
1993	done
1994	mc="$mc -u$remote_username"
1995	fi
1996
1997	# CHECK FOR INITIAL COMMANDS AFTER LOGIN
1998	if [[ "$login_init_cmd" != "" ]]
1999	then
2000	export init_cmds="${login_init_cmd};"
2001	fi
2002
2003
2004	# set module load command and export for subjob
2005	if [[ "$modules" != "" ]]
2006	then
2007	if [[ $host = lctit ]]
2008	then
2009	export module_calls=". $modules"
2010	else
2011	export module_calls="module load ${modules};"
2012	fi
2013	fi
2014
2015	# bugfix for wrong netcdf module and for netCDF4 usage in case of mpt
2016	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2017	then
2018	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
2019	then
2020	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
2021	fi
2022	# if [[ $(echo $module_calls \| grep -c mpt) != 0 ]]
2023	# then
2024	# export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/sgi/mpt/2011-02-07/lib:\$LD_LIBRARY_PATH;"
2025	# echo "*** module_calls = $module_calls"
2026	# fi
2027	fi
2028
2029
2030	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
2031	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2032	then
2033	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
2034	then
2035	mpilib=mpt
2036	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
2037	then
2038	mpilib=mvapich
2039	elif [[ $(echo $modules \| grep -c impi ) != 0 ]]
2040	then
2041	mpilib=impi
2042	fi
2043	fi
2044
2045
2046
2047	###########################################################################
2048	# HEADER-AUSGABE
2049	###########################################################################
2050
2051
2052	calltime=$(date)
2053	printf "\n"
2054	# [[ $silent = false ]] && clear
2055	printf "#------------------------------------------------------------------------# \n"
2056	printf "\| %-35s%35s \| \n" "$version" "$calltime"
2057	printf "\| \| \n"
2058	spalte1="called on:"; spalte2=$localhost_realname
2059	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2060	if [[ $local_compile = false ]]
2061	then
2062	if [[ $do_remote = true ]]
2063	then
2064	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2065	else
2066	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2067	fi
2068	else
2069	spalte1="compiling test only!"; spalte2=""
2070	fi
2071	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2072	if [[ -n $numprocs ]]
2073	then
2074	if [[ $run_coupled_model = false ]]
2075	then
2076	spalte1="number of PEs:"; spalte2=$numprocs
2077	else
2078	spalte1="number of PEs:"; spalte2="$numprocs (atmosphere: $numprocs_atmos, ocean: $numprocs_ocean)"
2079	fi
2080	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2081	fi
2082	if [[ -n $tasks_per_node ]]
2083	then
2084	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2085	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2086	fi
2087	if [[ $maximum_parallel_io_streams != $numprocs ]]
2088	then
2089	spalte1="max par io streams:"; spalte2="$maximum_parallel_io_streams"
2090	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2091	fi
2092	if [[ $use_openmp = true ]]
2093	then
2094	spalte1="threads per task:"; spalte2="$threads_per_task"
2095	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2096	fi
2097	printf "\| \| \n"
2098	if [[ $do_compile = true ]]
2099	then
2100	if [[ "$mopts" != "" ]]
2101	then
2102	spalte1="make options:"; spalte2=$(echo "$mopts" \| cut -c-45)
2103	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2104	zeile=$(echo "$mopts" \| cut -c46-)
2105	while [[ "$zeile" != "" ]]
2106	do
2107	spalte1=""
2108	spalte2=$(echo "$zeile" \| cut -c-45)
2109	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2110	zeile=$(echo "$zeile" \| cut -c46-)
2111	done
2112	fi
2113
2114	spalte1="cpp directives:"; spalte2=$(echo "$cpp_options" \| cut -c-45)
2115	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2116	zeile=$(echo "$cpp_options" \| cut -c46-)
2117	while [[ "$zeile" != "" ]]
2118	do
2119	spalte1=""
2120	spalte2=$(echo "$zeile" \| cut -c-45)
2121	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2122	zeile=$(echo "$zeile" \| cut -c46-)
2123	done
2124
2125	spalte1="compiler options:"; spalte2=$(echo "$fopts" \| cut -c-45)
2126	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2127	zeile=$(echo "$fopts" \| cut -c46-)
2128	while [[ "$zeile" != "" ]]
2129	do
2130	spalte1=""
2131	spalte2=$(echo "$zeile" \| cut -c-45)
2132	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2133	zeile=$(echo "$zeile" \| cut -c46-)
2134	done
2135
2136	spalte1="linker options:"; spalte2=$(echo "$lopts" \| cut -c-45)
2137	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2138	zeile=$(echo "$lopts" \| cut -c46-)
2139	while [[ "$zeile" != "" ]]
2140	do
2141	spalte1=""
2142	spalte2=$(echo "$zeile" \| cut -c-45)
2143	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2144	zeile=$(echo "$zeile" \| cut -c46-)
2145	done
2146
2147	spalte1="modules to be load:"; spalte2=$(echo "$modules" \| cut -c-45)
2148	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2149	zeile=$(echo "$modules" \| cut -c46-)
2150	while [[ "$zeile" != "" ]]
2151	do
2152	spalte1=""
2153	spalte2=$(echo "$zeile" \| cut -c-45)
2154	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2155	zeile=$(echo "$zeile" \| cut -c46-)
2156	done
2157
2158	spalte1="main program:"; spalte2=$mainprog
2159	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2160	else
2161	spalte1=executable:; spalte2=$executable
2162	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2163	fi
2164	printf "\| \| \n"
2165	spalte1="base name of files:"; spalte2=$fname
2166	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2167	if [[ $fname != $afname ]]
2168	then
2169	spalte1="base name of input files:"; spalte2=$afname
2170	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2171	fi
2172	spalte1="INPUT control list:"; spalte2=$(echo $input_list)
2173	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2174	spalte1="OUTPUT control list:"; spalte2=$(echo $output_list)
2175	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2176
2177	if [[ "$ocean_file_appendix" = true ]]
2178	then
2179	printf "\| %-35s%-35s \| \n" "suffix \"_O\" is added to local files" " "
2180	fi
2181
2182	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2183	then
2184	spalte1="memory demand / PE":; spalte2="$memory MB"
2185	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2186	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2187	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2188	fi
2189
2190	if [[ $do_compile = true ]]
2191	then
2192	printf "\| \| \n"
2193	printf "\| Files to be compiled: \| \n"
2194	zeile=$source_list
2195	while [[ "$zeile" != "" ]]
2196	do
2197	linestart=$(echo $zeile \| cut -c-70)
2198	printf "\| %-70s \| \n" "$linestart"
2199	zeile=$(echo "$zeile" \| cut -c71-)
2200	done
2201	fi
2202	printf "#------------------------------------------------------------------------#"
2203
2204
2205
2206	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2207	if [[ $do_trace = true ]]
2208	then
2209	(( i = 0 ))
2210	while (( i < iin ))
2211	do
2212	(( i = i + 1 ))
2213	if (( i == 1 ))
2214	then
2215	printf "\n\n >>> INPUT-file assignments:\n"
2216	fi
2217	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2218	done
2219	(( i = 0 ))
2220	while (( i < iout ))
2221	do
2222	(( i = i + 1 ))
2223	if (( i == 1 ))
2224	then
2225	printf "\n\n >>> OUTPUT-file assignments:\n"
2226	fi
2227	printf "\n ${localout[$i]} : ${pathout[$i]}"
2228	done
2229	(( i = 0 ))
2230	while (( i < iic ))
2231	do
2232	(( i = i + 1 ))
2233	if (( i == 1 ))
2234	then
2235	printf "\n\n >>> INPUT-commands:\n"
2236	fi
2237	printf "\n ${in_command[$i]}"
2238	done
2239	(( i = 0 ))
2240	while (( i < ioc ))
2241	do
2242	(( i = i + 1 ))
2243	if (( i == 1 ))
2244	then
2245	printf "\n\n >>> OUTPUT-commands:\n"
2246	fi
2247	printf "\n ${out_command[$i]}"
2248	done
2249	fi
2250
2251
2252	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2253	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2254	then
2255	antwort=dummy
2256	printf "\n\n"
2257	printf " >>> everything o.k. (y/n) ? "
2258	while read antwort
2259	do
2260	if [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2261	then
2262	printf " >>> everything o.k. (y/n) ? "
2263	else
2264	break
2265	fi
2266	done
2267	if [[ $antwort = n \|\| $antwort = N ]]
2268	then
2269	locat=user_abort; (( iec = 0 )); exit
2270	fi
2271	if [[ $do_batch = true ]]
2272	then
2273	printf " >>> batch-job will be created and submitted"
2274	else
2275	if [[ $local_compile = false ]]
2276	then
2277	printf " >>> MRUN will now continue to execute on this machine"
2278	else
2279	printf " >>> a test compilation will now be carried out on this machine"
2280	fi
2281	fi
2282	fi
2283
2284
2285	# PERFORM PARAMETER FILE CHECK (COUPLED RUNS ARE NOT SUPPORTED YET)
2286	# DEFINE VARIABLES FOR FREQUENTLY USED DIRECTORIES
2287	check_depository="${working_directory}/trunk/UTIL"
2288	check_sources="${working_directory}/tmp_check_namelist_files"
2289	skip_check=false
2290
2291	# CHECK IF NAMELIST_FILE_CHECK HAS BEEN COMPILED SUCCESSFULLY
2292	if [[ ! -f $check_depository/check_namelist_files.tar ]]
2293	then
2294	skip_check=true
2295	reason="run on remote host or parameter file check has not been compiled."
2296	fi
2297	if [[ ! -f $PALM_BIN/check_namelist_files.x ]]
2298	then
2299	skip_check=true
2300	reason="parameter file check has not been compiled."
2301	fi
2302
2303	# CHECK FOR PARALLEL RUN; OTHERWISE SKIP CHECK
2304	if [[ "$cond1" != "parallel" && "$cond2" != "parallel" ]]
2305	then
2306	skip_check=true
2307	reason="serial run."
2308	fi
2309
2310	# ONLY PERFORM CHECK IF -z OPTION IS NOT SET, NO RESTART RUN IS CARRIED OUT
2311	# AND IF THE EXECUTION HOST IS THE LOCAL HOST
2312	# ATTENTION: THIS ROUTINE DOES NOT WORK IF THE COMPILER ON THE LOCAL HOST
2313	# DIFFERS FROM THE COMPILER ON THE REMOTE HOST
2314	if [[ $check_namelist_files == false ]]
2315	then
2316	skip_check=true
2317	reason="-z option set."
2318	fi
2319
2320	if [[ $fromhost != $localhost ]]
2321	then
2322	skip_check=true
2323	reason="submitting host is local host."
2324	fi
2325
2326	if [[ $run_coupled_model == true ]]
2327	then
2328	skip_check=true
2329	reason="coupled run."
2330	fi
2331
2332	if [[ $restart_run == true ]]
2333	then
2334	skip_check=true
2335	reason="restart run."
2336	fi
2337
2338	# SKIP CHECK IN CASE OF RESTART RUN: CHECK WHETHER THE LAST CHAR IS "f" IN PARIN
2339	(( last_char_int = `echo $filename_input \| wc -c` - 1 ))
2340	last_char=`echo $filename_input \| cut -c $last_char_int`
2341	if [[ "$last_char" == "f" ]]
2342	then
2343	skip_check=true
2344	reason="restart run."
2345	fi
2346
2347	if [[ $skip_check == false ]]
2348	then
2349	tmp_check=${working_directory}/tmp_check
2350
2351	# GET TOPOGRAPHY PARAMETER FILE SUFFIX (USUALLY "_P3DF"). THIS FILE MIGHT IS
2352	# NOT NECESSARILY REQUIRED
2353	line=""
2354	found=false
2355	grep "TOPOGRAPHY_DATA" $config_file > $tmp_check
2356	while read line1
2357	do
2358	line="$line1"
2359	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2360	then
2361	topo_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2362	found=true
2363	fi
2364	done < $tmp_check
2365
2366	if [[ $found = false ]]
2367	then
2368	printf "\n +++ no TOPOGRAPHY list entry found in the configuration file."
2369	fi
2370
2371	rm -rf ${working_directory}/tmp_check
2372
2373	# CHECK IF THE A P3DF FILE MUST BE CHECKED
2374	for item in $input_list
2375	do
2376	if [[ "$item" == "restart" ]]
2377	then
2378	check_restart=1
2379	else
2380	check_restart=0
2381	fi
2382	done
2383
2384	# ERROR IF NO PARAMETER FILE WAS FOUND, OTHERWISE PROCEED
2385	if [[ (! -f $filename_input) && ( "$filename_input" != "" ) ]]
2386	then
2387	printf "\n\n +++ ERROR: parameter file ($filename_input) not found."
2388	locat=check_namelist; exit
2389	fi
2390
2391	# CHECK IF THE RESTART PARAMETER FILE EXISTS (IF NECESSARY)
2392	if [[ $check_restart == 1 ]]
2393	then
2394
2395	filenamef="${filename_input}f"
2396	if [[ ! -f $filenamef ]]
2397	then
2398	printf "\n\n +++ WARNING: restart parameter file ($filenamef) is missing."
2399	check_restart=0
2400	answer=dummy
2401	printf "\n\n"
2402
2403	if [[ $silent == false ]]
2404	then
2405	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2406	do
2407	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2408	read answer
2409	done
2410	if [[ $answer = a \|\| $answer = A ]]
2411	then
2412	printf "\n +++ Aborting...."
2413	locat=normal; exit
2414	fi
2415	fi
2416	else
2417	check_restart=1
2418	fi
2419	fi
2420
2421	# CREATE TEMPORARY SOURCES_FOR_CHECK PATH
2422	mkdir $check_sources
2423	cd $check_sources
2424
2425
2426	# CHECK FOR USER CODE, OTHERWISE USE THE PRECOMPILED CHECK_NAMELIST_FILES.X
2427	if [[ -d $add_source_path ]]
2428	then
2429	printf "\n\n *** copying files from $check_depository"
2430	cp $check_depository/check_namelist_files.tar ./
2431
2432	printf "\n\n *** untar of makefile and source files in $check_sources"
2433	tar -xf check_namelist_files.tar > /dev/null 2>&1
2434
2435	printf "\n\n *** adding user code."
2436	cp $add_source_path/* ./
2437	touch check_namelist_files.f90
2438
2439	# GET COMPILER OPTIONS AND PERFORM MAKE
2440	printf "\n\n *** compiling code if necessary...\n"
2441
2442	# workaround for batch jobs on local machine (lcxe6)
2443	if [[ $do_batch == true && $do_remote == false ]]
2444	then
2445	eval $init_cmds
2446	fi
2447
2448	# GET CHECK OPTIONS
2449	line=""
2450	found=false
2451
2452	grep "$localhost" ${base_directory}/${config_file} \| grep "%cpp_options" > $tmp_check
2453
2454	while read line1
2455	do
2456
2457	if [[ $(echo $line1 \| cut -d" " -s -f3-) = "$localhost" ]]
2458	then
2459	line="$line1"
2460	fi
2461
2462	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2463	then
2464	# EVENTUELLE DOPPELPUNKTE AUS OPTIONSSTRING UND ALLE -D ENTFERNEN
2465	line="$line "
2466	copts_check=`echo $line \| cut -d" " -s -f2 \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g' \| sed 's/-D[^ ]* //g' \| sed 's/ -D.*//g'`
2467	found=true
2468	fi
2469
2470	done < $tmp_check
2471	copts_check="$copts_check -D__check -D__parallel"
2472
2473	make -f Makefile_check F90=$compiler_name_ser COPT="$copts_check"
2474
2475	# GET MAKE OUTPUT
2476	if [[ $? != 0 ]]
2477	then
2478	printf "\n +++ error during make."
2479	answer=dummy
2480	printf "\n\n"
2481	if [[ $silent == false ]]
2482	then
2483	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2484	do
2485	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2486	read answer
2487	done
2488	if [[ $answer = a \|\| $answer = A ]]
2489	then
2490	printf "\n +++ Aborting..."
2491	rm -rf $check_sources
2492	locat=normal; exit
2493	else
2494	skip_check=true
2495	fi
2496	else
2497	skip_check=true
2498	fi
2499	fi
2500	else
2501	cp $PALM_BIN/check_namelist_files.x ./
2502	fi
2503
2504	cp $filename_input ./PARIN
2505	if [[ $check_restart == 1 ]]
2506	then
2507	cp $filenamef ./PARINF
2508	fi
2509
2510	if [[ -f ${pathname}/${fname}${topo_suffix} && $skip_check == false ]]
2511	then
2512	printf "\n *** adding topography data"
2513	cp ${pathname}/${fname}${topo_suffix} ./TOPOGRAPHY_DATA
2514
2515	# IN CASE OF TOPOGRAPHY AND HIGH GRID POINT NUMBERS, THE STACK SIZE
2516	# MUST BE INCREASED. THIS IS DUE TO THE ARRAY nzb_local AND topo_height,
2517	# WHICH REQUIRE SUFFICIENT MEMORY
2518	ulimit -s unlimited
2519	fi
2520
2521	# CREATE ENVPAR FILE, WHICH IS NEEDED BY CHECK_NAMELIST_FILES.X
2522	cat > ENVPAR << %%END%%
2523	&envpar run_identifier = '$fname', host = '$host',
2524	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2525	maximum_parallel_io_streams = $maximum_parallel_io_streams,
2526	maximum_cpu_time_allowed = ${cpumax}.,
2527	revision = '$global_revision',
2528	local_dvrserver_running = $local_dvrserver_running /
2529
2530	%%END%%
2531
2532	# SAFETY CHECK: ONLY PROCEED IF THE PARAMETER CHECK PROGRAM WAS PROPERLY COMPILED
2533	if [[ ! -f check_namelist_files.x && $skip_check == false ]]
2534	then
2535	printf "\n +++ WARNING: check_namelist_files.x not found."
2536	answer=dummy
2537	printf "\n\n"
2538
2539	if [[ $silent == false ]]
2540	then
2541	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2542	do
2543	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2544	read answer
2545	done
2546	if [[ $answer = a \|\| $answer = A ]]
2547	then
2548	printf "\n +++ Aborting..."
2549	rm -rf $check_sources
2550	locat=normal; exit
2551	else
2552	printf "\n *** skipping parameter file check."
2553	fi
2554	fi
2555
2556	elif [[ $skip_check == false ]]
2557	then
2558	# STARTING THE PARAMETER FILE CHECK
2559	printf "\n\n *** starting parameter file check..."
2560
2561	# CHECKING THE P3D FILE
2562	printf "\n\n (1) checking $filename_input"
2563	echo "$numprocs 0 0" > VARIN
2564	errors=`./check_namelist_files.x < VARIN 2>&1`
2565
2566	check_error=false
2567	if [[ "$errors" == "" ]]
2568	then
2569	printf " --> o.k."
2570	else
2571	printf " --> failed."
2572	check_error=true
2573	printf "\n\n $errors"
2574	fi
2575
2576	# CHECKING THE PD3F FILE IF NECESSARY
2577	if [[ $check_restart == 1 && $check_error == false ]]
2578	then
2579	printf "\n\n (2) checking $filenamef"
2580
2581	# FIRST CHECK IF INITIALIZING_ACTIONS="READ_RESTART_DATA" IS SET
2582	# IN &INIPAR LIST
2583	found=false
2584	cat PARINF \| while read line
2585	do
2586	line=$(echo $line\|sed 's/ //g')
2587	if [[ $line == "&inipar" ]]
2588	then
2589	start_search=true
2590	fi
2591
2592	if [[ $start_search == true ]]
2593	then
2594	if [[ $line == "initializing_actions='read_restart_data'" ]]
2595	then
2596	found=true
2597	break
2598	fi
2599	fi
2600
2601	if [[ $line == "/" ]]
2602	then
2603	start_search=false
2604	fi
2605
2606	done
2607
2608	if [[ $found = false ]]
2609	then
2610	printf "\n\n +++ ERROR: initializing_actions = 'read_restart_data' not found"
2611	printf "\n in &inipar list in $fname$p3df_suffix."
2612	rm -rf $check_sources
2613	locat=check_namelist; exit
2614	fi
2615
2616	# READ max_user_pr FROM FILES
2617	if [[ -f parin_for_check ]]
2618	then
2619	read max_pr_user < parin_for_check
2620	else
2621	max_user_pr=0
2622	fi
2623
2624	echo "$numprocs 1 $max_pr_user" > VARIN
2625	errors=`./check_namelist_files.x < VARIN 2>&1`
2626
2627	if [[ "$errors" == "" ]]
2628	then
2629	printf " --> o.k."
2630	else
2631	printf " --> failed."
2632	check_error=true
2633	printf "\n\n $errors"
2634	fi
2635	fi
2636
2637	# REPORT ERRORS AND CONTINUE/EXIT
2638	if [[ $check_error == true ]]
2639	then
2640	printf "\n +++ errors found in the parameter file!\n"
2641	answer=dummy
2642	printf "\n\n"
2643
2644	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2645	do
2646	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2647	read answer
2648	done
2649
2650	if [[ $answer = a \|\| $answer = A ]]
2651	then
2652	printf "\n +++ Aborting..."
2653	rm -rf $check_sources
2654	locat=normal; exit
2655	fi
2656	else
2657	printf "\n\n *** parameter file(s) seem(s) to be o.k.\n"
2658	fi
2659	rm -rf $check_sources
2660	fi
2661	else
2662	printf "\n\n +++ skipping parameter file check due to following reason: $reason \n"
2663	fi
2664
2665	# DELETE TEMPORARY DIRECTORY AND FINISH NAMELIST FILE CHECK
2666	rm -rf $check_sources
2667	cd $working_directory
2668
2669
2670	# DETERMINE PATH FOR MAKE DEPOSITORY
2671	if [[ $do_batch = false \|\| $create_executable_for_batch = true ]]
2672	then
2673
2674	line=""
2675	grep "%depository_path" $config_file > tmp_mrun
2676	while read line
2677	do
2678	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2679	then
2680	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2681	then
2682	global_depository_path=`echo $line \| cut -d" " -s -f2`
2683	fi
2684	fi
2685	done < tmp_mrun
2686
2687	line=""
2688	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2689	while read line
2690	do
2691	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2692	then
2693	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2694	then
2695	local_depository_path=`echo $line \| cut -d" " -s -f2`
2696	fi
2697	fi
2698	done < tmp_mrun
2699
2700	if [[ "$local_depository_path" = "" ]]
2701	then
2702	if [[ "$global_depository_path" != "" ]]
2703	then
2704	local_depository_path=$global_depository_path
2705	else
2706	printf "\n\n +++ no depository path found in configuration file"
2707	printf "\n for local host \"$localhost\" "
2708	printf "\n please set \"\%depository_path\" in configuration file\n"
2709	locat=config_file; exit
2710	fi
2711	fi
2712	eval local_depository_path=$local_depository_path
2713	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2714	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2715
2716
2717	basename=`echo $mainprog \| cut -f1 -d"."`
2718	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2719	if [[ ! -f $make_depository ]]
2720	then
2721	printf "\n"
2722	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2723	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2724	fi
2725
2726	fi
2727
2728
2729	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2730	# CHENDE AKTIONEN DURCHGEFUEHRT
2731	if [[ $do_batch = false ]]
2732	then
2733
2734
2735	# TEMPORAEREN KATALOG ERZEUGEN
2736	mkdir -p $TEMPDIR
2737	chmod go+rx $TEMPDIR
2738	tmpcreate=true
2739
2740
2741	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2742	# TEMPORAERES VERZEICHNIS KOPIEREN
2743	if [[ $do_compile = true ]]
2744	then
2745
2746	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2747	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2748	if [[ $localhost = nech ]]
2749	then
2750	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2751	if mkdir -p $TEMPDIR_COMPILE
2752	then
2753	printf "\n *** \"$TEMPDIR_COMPILE\" "
2754	printf "\n is generated as temporary directory for cross compiling\n"
2755	else
2756	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2757	printf "\n needed for cross compilation failed"
2758	locat=compile
2759	exit
2760	fi
2761	else
2762	TEMPDIR_COMPILE=$TEMPDIR
2763	fi
2764
2765	cp $make_depository $TEMPDIR_COMPILE
2766	cd $TEMPDIR_COMPILE
2767	tar -xf $make_depository > /dev/null 2>&1
2768	cd - > /dev/null
2769
2770	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2771
2772	else
2773
2774	cp $executable ${TEMPDIR}/a.out
2775
2776	fi
2777
2778
2779	# WECHSEL IN TEMPORAEREN KATALOG
2780	cd $TEMPDIR
2781	printf "\n *** changed to temporary directory: $TEMPDIR"
2782
2783
2784	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2785	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2786	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2787	# ERMITTELN
2788	(( i = 0 ))
2789	while (( i < iout ))
2790	do
2791	(( i = i + 1 ))
2792	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2793	then
2794	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2795	else
2796	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2797	fi
2798	done
2799
2800
2801	# IF REQUIRED, START WITH COMPILING ACTIONS
2802	if [[ $do_compile = true ]]
2803	then
2804
2805
2806	if [[ -f a.out ]]
2807	then
2808
2809	# EXECUTABLE WAS CREATED DURING INTERACTIVE CALL OF MRUN
2810	printf "\n\n\n *** executable a.out found"
2811	printf "\n no compilation required \n"
2812
2813	else
2814
2815	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2816	printf "\n\n\n *** compilation starts \n$striche\n"
2817	printf " *** compilation with make using following options:\n"
2818	printf " make depository: $make_depository"
2819	if [[ "$mopts" != "" ]]
2820	then
2821	printf " make options: $mopts\n"
2822	fi
2823	printf " compilername: $compiler_name\n"
2824	printf " compiler options: $fopts\n"
2825	printf " preprocessor directives: $cpp_options \n"
2826	printf " linker options: $lopts \n"
2827	if [[ "$modules" != "" ]]
2828	then
2829	printf " modules to be load: $modules \n"
2830	fi
2831	printf " source code files: $source_list \n"
2832
2833	if [[ $localhost = nech ]]
2834	then
2835	ssh $SSH_PORTOPT 136.172.44.192 -l $usern "$init_cmds $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2836	cp $TEMPDIR_COMPILE/a.out .
2837	[[ $? != 0 ]] && compile_error=true
2838	rm -rf $TEMPDIR_COMPILE
2839	elif [[ $localhost = ibmh ]]
2840	then
2841	printf " compiler is called via ssh on \"plogin1\" \n"
2842	ssh $SSH_PORTOPT plogin1 -l $usern "$init_cmds export PATH=/sw/ibm/xlf/13.1.0.8/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2843	[[ ! -f a.out ]] && compile_error=true
2844	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2845	elif [[ $localhost = lcsgib ]]
2846	then
2847	printf " compiler is called via ssh on \"bicegate0\" \n"
2848	ssh $SSH_PORTOPT bicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2849	[[ ! -f a.out ]] && compile_error=true
2850	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2851	elif [[ $localhost = lcsgih ]]
2852	then
2853	printf " compiler is called via ssh on \"hicegate0\" \n"
2854	ssh $SSH_PORTOPT hicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2855	[[ ! -f a.out ]] && compile_error=true
2856	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2857	elif [[ $localhost = lcflow ]]
2858	then
2859	printf " compiler is called via ssh on \"flow\" \n"
2860	/usr/bin/ssh $SSH_PORTOPT flow02.hpc.uni-oldenburg.de -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2861	[[ ! -f a.out ]] && compile_error=true
2862	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2863	elif [[ $localhost = lccrayb \|\| $localhost = lccrayf ]]
2864	then
2865	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2866	else
2867	[[ "$init_cmds" != "" ]] && eval $init_cmds
2868	[[ "$module_calls" != "" ]] && eval $module_calls
2869	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2870	fi
2871
2872	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2873	then
2874	printf "\n +++ error occured while compiling or linking"
2875	locat=compile
2876
2877	exit
2878	else
2879	printf "$striche\n *** compilation finished \n"
2880	fi
2881
2882	fi
2883
2884	fi
2885
2886
2887	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2888	if [[ $local_compile = true ]]
2889	then
2890	cd $HOME
2891	rm -rf $TEMPDIR
2892	locat=local_compile; exit
2893	fi
2894
2895
2896	# BEREITSTELLEN DER INPUT-DATEIEN
2897	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2898	(( i = 0 ))
2899	while (( i < iin ))
2900	do
2901	(( i = i + 1 ))
2902	if (( i == 1 ))
2903	then
2904	printf "\n\n *** providing INPUT-files:\n$striche"
2905	fi
2906
2907
2908	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2909	if [[ "${transin[$i]}" = unavailable ]]
2910	then
2911	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2912	then
2913	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2914	printf "\n is not available!"
2915	else
2916	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2917	printf "\n is not available!"
2918	fi
2919	continue
2920	fi
2921
2922	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2923	files_for_pes=false; datentyp=file
2924	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2925	then
2926	files_for_pes=true; datentyp=directory
2927	actionin[$i]=""
2928	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2929	then
2930	actionin[$i]=""
2931	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2932	then
2933	files_for_pes=true; datentyp=directory
2934	actionin[$i]="ar"
2935	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2936	then
2937	actionin[$i]="ar"
2938	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2939	then
2940	files_for_pes=true; datentyp=directory
2941	actionin[$i]="fl"
2942	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2943	then
2944	actionin[$i]="fl"
2945	fi
2946
2947	if [[ $files_for_pes = true ]]
2948	then
2949	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
2950	else
2951	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
2952	fi
2953
2954	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
2955	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
2956	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
2957	# SERVER ZU HOLEN
2958	if [[ "${actionin[$i]}" = fl ]]
2959	then
2960	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
2961	if [[ $files_for_pes = false ]]
2962	then
2963	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
2964	then
2965	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
2966	got_tmp[$i]=true
2967	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2968	then
2969	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2970	printf "\n *** trying to use backup copy in \"$WORK\" "
2971	cp $WORK/${frelin[$i]} ${localin[$i]}
2972	else
2973	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2974	printf "\n or \"$tmp_data_catalog\" does not exist!"
2975	printf "\n *** trying to get copy from archive"
2976	actionin[$i]=ar
2977	fi
2978	else
2979	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
2980	then
2981	mkdir ${localin[$i]}
2982	cd $tmp_data_catalog/${frelin[$i]}
2983	for file in $(ls *)
2984	do
2985	ln $file $TEMPDIR/${localin[$i]}
2986	done
2987	cd $TEMPDIR
2988	got_tmp[$i]=true
2989	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2990	then
2991	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2992	printf "\n *** trying to use backup copy in \"$WORK\" "
2993	cp -r $WORK/${frelin[$i]} ${localin[$i]}
2994	else
2995	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2996	printf "\n or \"$tmp_data_catalog\" does not exist!"
2997	printf "\n *** trying to get copy from archive"
2998	actionin[$i]=ar
2999	fi
3000	fi
3001	fi
3002
3003
3004	# DATEI LIEGT AUF ARCHIV-SERVER
3005	if [[ "${actionin[$i]}" = ar ]]
3006	then
3007
3008	if [[ $files_for_pes = false ]]
3009	then
3010	printf "\n file will be restored from archive-system ($archive_system)!"
3011	else
3012	printf "\n directory will be restored from archive-system ($archive_system)!"
3013	fi
3014
3015	file_restored=false
3016
3017	if [[ $archive_system = asterix ]]
3018	then
3019	do_stagein=true
3020	(( stagein_anz = 0 ))
3021	while [[ $do_stagein = true ]]
3022	do
3023	if [[ $files_for_pes = false ]]
3024	then
3025	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
3026	else
3027	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
3028	fi
3029	cat STAGEIN_OUTPUT
3030	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
3031	then
3032	file_restored=true
3033	do_stagein=false
3034	else
3035	(( stagein_anz = stagein_anz + 1 ))
3036	if (( stagein_anz == 10 ))
3037	then
3038	printf "\n +++ stagein stoped after 10 tries"
3039	locat=stage
3040	exit
3041	fi
3042	printf "\n +++ restoring from archive failed, trying again:"
3043	sleep 900
3044	fi
3045	done
3046	elif [[ $archive_system = DMF ]]
3047	then
3048	if [[ $files_for_pes = false ]]
3049	then
3050	printf "\n +++ restoring of single files impossible with $archive_system !\n"
3051	locat=DMF
3052	exit
3053	else
3054	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
3055	cp -r $ARCHIVE/${frelin[$i]} $PWD
3056	file_restored=true
3057	fi
3058	elif [[ $archive_system = tivoli ]]
3059	then
3060	if [[ $files_for_pes = false ]]
3061	then
3062	if [[ $localhost = lcsgih ]]
3063	then
3064	ssh $SSH_PORTOPT $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3065	else
3066	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3067	fi
3068	else
3069	(( inode = 0 ))
3070	while (( inode < nodes ))
3071	do
3072	if [[ $localhost = lcsgih ]]
3073	then
3074	ssh $SSH_PORTOPT $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3075	else
3076	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3077	fi
3078	(( inode = inode + 1 ))
3079	done
3080	fi
3081	file_restored=true
3082	elif [[ $archive_system = ut ]]
3083	then
3084	if [[ $files_for_pes = false ]]
3085	then
3086	cp $UT/${frelin[$i]} .
3087	else
3088	(( inode = 0 ))
3089	while (( inode < nodes ))
3090	do
3091	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
3092	(( inode = inode + 1 ))
3093	done
3094	fi
3095	file_restored=true
3096	else
3097	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
3098	locat=rearchive
3099	exit
3100	fi
3101
3102	if [[ $file_restored = true ]]
3103	then
3104
3105	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
3106	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
3107	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
3108	if [[ $files_for_pes = false ]]
3109	then
3110	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
3111	else
3112	mkdir $tmp_data_catalog/${frelin[$i]}
3113	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
3114	fi
3115	got_tmp[$i]=true
3116
3117	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
3118	mv ${frelin[$i]} ${localin[$i]}
3119
3120	fi
3121	fi
3122
3123
3124	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
3125	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
3126	then
3127
3128	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
3129	then
3130
3131	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
3132	printf "\n file will be provided for $numprocs processors"
3133	mkdir ${localin[$i]}
3134	ival=$numprocs
3135	(( ii = 0 ))
3136	while (( ii <= ival-1 ))
3137	do
3138	if (( ii < 10 ))
3139	then
3140	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
3141	elif (( ii < 100 ))
3142	then
3143	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
3144	elif (( ii < 1000 ))
3145	then
3146	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
3147	else
3148	cp ${absnamein[$i]} ${localin[$i]}/_$ii
3149	fi
3150	(( ii = ii + 1 ))
3151	done
3152
3153	else
3154
3155	if [[ $files_for_pes = true ]]
3156	then
3157
3158	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
3159	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
3160	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
3161	# PER MOVE UMBENANNT WERDEN
3162	printf "\n providing $numprocs files for the respective processors"
3163	mkdir ${localin[$i]}
3164	if [[ $link_local_input = true ]]
3165	then
3166	printf " using ln -f\n"
3167	cd ${absnamein[$i]}
3168	for file in $(ls *)
3169	do
3170	ln -f $file ${localin[$i]}
3171	done
3172	cd $TEMPDIR
3173	fi
3174	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
3175	if [[ ! -f "${localin[$i]}/_0000" ]]
3176	then
3177	if [[ $link_local_input = true ]]
3178	then
3179	printf " ln failed for .../_0000, using cp...\n"
3180	fi
3181	cp -r ${absnamein[$i]}/* ${localin[$i]}
3182	fi
3183
3184	else
3185	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
3186	if [[ $link_local_input = true ]]
3187	then
3188	printf " using ln -f\n"
3189	ln -f ${absnamein[$i]} ${localin[$i]}
3190	fi
3191	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
3192	if [[ ! -f "${localin[$i]}" ]]
3193	then
3194	if [[ $link_local_input = true ]]
3195	then
3196	printf " ln failed, using cp...\n"
3197	fi
3198	cp ${absnamein[$i]} ${localin[$i]}
3199	fi
3200	fi
3201	fi
3202	fi
3203
3204	done
3205	if (( i != 0 ))
3206	then
3207	printf "\n$striche\n *** all INPUT-files provided \n"
3208	fi
3209
3210
3211	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
3212	(( i = 0 ))
3213	while (( i < iic ))
3214	do
3215	(( i = i + 1 ))
3216	if (( i == 1 ))
3217	then
3218	printf "\n\n *** execution of INPUT-commands:\n$striche"
3219	fi
3220	printf "\n >>> ${in_command[$i]}"
3221	eval ${in_command[$i]}
3222	if (( i == iic ))
3223	then
3224	printf "\n$striche\n"
3225	fi
3226	done
3227
3228
3229	# VERBLEIBENDE CPU-ZEIT BERECHNEN
3230	cpurest=${cpumax}.
3231
3232
3233	# START DVR STREAMING SERVER
3234	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3235	then
3236	if [[ "$dvr_server" != "" ]]
3237	then
3238
3239	printf "\n\n *** preparing the dvr streaming server configuration file"
3240
3241	# Check, if a dvr server is already running
3242	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
3243	if [[ "$running_dvrserver_id" != "" ]]
3244	then
3245
3246	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
3247	printf "\n This server is used instead starting a new one!"
3248	printf "\n If required, script \"process_dvr_output\" has to be run manually."
3249
3250	else
3251
3252	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
3253	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
3254	then
3255	cp ${PALM_BIN}/.dvrserver.config .
3256
3257	# Entering the BASEDIR, UID and GID into this file
3258	user_id=`id -u`
3259	group_id=`id -g`
3260	# & is needed as seperator, because TEMPDIR contains /
3261	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
3262	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
3263	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
3264	mv .dvrserver.3 .dvrserver.config
3265	rm .dvrserver.1 .dvrserver.2
3266
3267	# Start dvr server in background, get his id and print on terminal
3268	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
3269	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
3270	printf "\n *** streaming server with id=$dvrserver_id is started in background"
3271	local_dvrserver_running=.TRUE.
3272	else
3273	printf "\n +++ missing file \".dvrserver.config\" in directory:"
3274	printf "\n \"$PALM_BIN\" "
3275	locat=dvr
3276	exit
3277	fi
3278
3279	fi
3280
3281	else
3282	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
3283	fi
3284	fi
3285
3286
3287	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
3288	# LESEN VON PALM)
3289	cat > ENVPAR << %%END%%
3290	&envpar run_identifier = '$fname', host = '$localhost',
3291	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
3292	maximum_parallel_io_streams = $maximum_parallel_io_streams,
3293	maximum_cpu_time_allowed = ${cpumax}.,
3294	revision = '$global_revision',
3295	local_dvrserver_running = $local_dvrserver_running /
3296
3297	%%END%%
3298
3299
3300	# PROGRAMMSTART
3301	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
3302	PATH=$PATH:$TEMPDIR
3303
3304	# MPI debug option (argument checking, slows down execution due to increased latency)
3305	if [[ "$mpi_debug" = true ]]
3306	then
3307	export MPI_CHECK_ARGS=1
3308	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
3309	fi
3310
3311	if [[ "$totalview" = true ]]
3312	then
3313	printf "\n *** totalview debugger will be used"
3314	tv_opt="-tv"
3315	else
3316	tv_opt=""
3317	fi
3318
3319	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
3320	then
3321	if [[ "$ENVIRONMENT" = BATCH ]]
3322	then
3323	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
3324	then
3325	printf "\n +++ debug is allowed in interactive mode only"
3326	locat=debug
3327	exit
3328	fi
3329	fi
3330	if [[ $localhost = ibmh ]]
3331	then
3332
3333	# SETUP THE IBM MPI ENVIRONMENT
3334	export MP_SHARED_MEMORY=yes
3335	export AIXTHREADS_SCOPE=S
3336	export OMP_NUM_THREADS=$threads_per_task
3337	export AUTHSTATE=files
3338	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3339
3340	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
3341	export MP_ADAPTER_USE=shared
3342	export MP_CPU_USE=multiple
3343	export MP_TIMEOUT=1200
3344
3345	unset MP_TASK_AFFINITY
3346
3347	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
3348	#(( ii = 1 ))
3349	#while (( ii <= $numprocs ))
3350	#do
3351	# echo $localhost_realname >> hostfile
3352	# (( ii = ii + 1 ))
3353	#done
3354	#export MP_HOSTFILE=hostfile
3355
3356	if [[ "$LOADLBATCH" = yes ]]
3357	then
3358	totalview poe a.out $ROPTS
3359	else
3360	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3361	export TVDSVRLAUNCHCMD=ssh
3362	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3363	fi
3364	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
3365	then
3366	# CURRENTLY NO DEBUGGER ON LCSGI
3367	if [[ $run_coupled_model = true ]]
3368	then
3369	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
3370	locat=debug
3371	exit
3372	else
3373	echo "no_coupling" > runfile_atmos
3374	fi
3375	(( ii = $numprocs / $threads_per_task ))
3376	export OMP_NUM_THREADS=$threads_per_task
3377	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3378	if [[ $threads_per_task != 1 ]]
3379	then
3380	printf "\n threads per task: $threads_per_task"
3381	fi
3382	printf "\n\n"
3383	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3384	then
3385	# export MPI_LAUNCH_TIMEOUT=360
3386	if [[ "$totalview" = true ]]
3387	then
3388	printf "\n running totalview debugger"
3389	mpiexec_mpt $tv_opt -n $ii ./a.out $ROPTS < runfile_atmos
3390	else
3391	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3392	fi
3393	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3394	then
3395	# ulimit -s 300000 # A too large stack size causes problems
3396	# export MV2_NUM_PORTS=2
3397	# export MV2_CPU_MAPPING=0:1:2:3
3398	if [[ "$totalview" = true ]]
3399	then
3400	printf "\n running totalview debugger"
3401	mpiexec $tv_opt ./a.out $ROPTS < runfile_atmos
3402	else
3403	mpiexec ./a.out $ROPTS < runfile_atmos
3404	fi
3405	fi
3406	else
3407	printf "\n +++ no debug available on \"$localhost\" "
3408	printf "\n or not implemented in mrun so far"
3409	locat=debug
3410	exit
3411	fi
3412
3413	# end debug mode
3414	else
3415
3416	# normal execution
3417	if [[ -n $numprocs ]]
3418	then
3419	# RUNNING THE PROGRAM ON PARALLEL MACHINES
3420	if [[ $(echo $host \| cut -c1-3) = ibm ]]
3421	then
3422	# SETUP THE IBM MPI ENVIRONMENT
3423	if [[ $host != ibmh && $host != ibmkisti ]]
3424	then
3425	export MP_SHARED_MEMORY=yes
3426	export AIXTHREAD_SCOPE=S
3427	export OMP_NUM_THREADS=$threads_per_task
3428	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
3429	export AUTHSTATE=files
3430	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3431	# export MP_PRINTENV=yes
3432
3433	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3434	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3435	export MP_WAIT_MODE=poll
3436	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3437	fi
3438
3439	if [[ $host = ibmkisti ]]
3440	then
3441	export LANG=en_US
3442	export MP_SHARED_MEMORY=yes
3443	if [[ $threads_per_task = 1 ]]
3444	then
3445	export MP_SINGLE_THREAD=yes
3446	export MEMORY_AFFINITY=MCM
3447	else
3448	export OMP_NUM_THREADS=$threads_per_task
3449	fi
3450	fi
3451
3452	if [[ "$LOADLBATCH" = yes ]]
3453	then
3454	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3455	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3456	then
3457	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3458	else
3459	if [[ $run_coupled_model = false ]]
3460	then
3461	if [[ "$ocean_file_appendix" = true ]]
3462	then
3463	echo "precursor_ocean" > runfile_atmos
3464	else
3465	echo "precursor_atmos" > runfile_atmos
3466	fi
3467	else
3468	(( iia = $numprocs_atmos / $threads_per_task ))
3469	(( iio = $numprocs_ocean / $threads_per_task ))
3470	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3471	printf "\n using $coupled_mode coupling"
3472	printf "\n\n"
3473	echo "coupled_run $iia $iio" > runfile_atmos
3474	fi
3475	poe ./a.out $ROPTS < runfile_atmos
3476	fi
3477	else
3478	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
3479	then
3480	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3481	elif [[ $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibmy ]]
3482	then
3483	if [[ -f $hostfile ]]
3484	then
3485	cp $hostfile hostfile
3486	else
3487	(( ii = 1 ))
3488	while (( ii <= $numprocs ))
3489	do
3490	echo $localhost_realname >> hostfile
3491	(( ii = ii + 1 ))
3492	done
3493	fi
3494	export MP_HOSTFILE=hostfile
3495	if [[ $run_coupled_model = false ]]
3496	then
3497	if [[ "$ocean_file_appendix" = true ]]
3498	then
3499	echo "precursor_ocean" > runfile_atmos
3500	else
3501	echo "precursor_atmos" > runfile_atmos
3502	fi
3503	else
3504	(( iia = $numprocs_atmos / $threads_per_task ))
3505	(( iio = $numprocs_ocean / $threads_per_task ))
3506	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3507	printf "\n using $coupled_mode coupling"
3508	printf "\n\n"
3509	echo "coupled_run $iia $iio" > runfile_atmos
3510	fi
3511	if [[ $localhost = ibmy ]]
3512	then
3513	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3514	else
3515	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
3516	fi
3517
3518	else
3519	if [[ "$host_file" = "" ]]
3520	then
3521	printf "\n +++ no hostfile given in configuration file"
3522	locat=config_file
3523	exit
3524	else
3525	eval host_file=$host_file
3526	fi
3527	export MP_HOSTFILE=$host_file
3528	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3529	fi
3530	fi
3531	elif [[ $host = nech \|\| $host = necriam ]]
3532	then
3533	(( ii = nodes ))
3534	if [[ $ii = 1 ]]
3535	then
3536	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3537	export MPIPROGINF=YES
3538	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3539	echo "*** execution on single node with mpirun"
3540	mpirun -np $numprocs ./a.out $ROPTS
3541	else
3542	(( i = 0 ))
3543	while (( i < ii ))
3544	do
3545	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3546	(( i = i + 1 ))
3547	done
3548
3549	echo "#!/bin/sh" > mpi_exec_shell
3550	echo " " >> mpi_exec_shell
3551	echo "set -u" >> mpi_exec_shell
3552	echo "F_ERRCNT=0" >> mpi_exec_shell
3553	echo "MPIPROGINV=YES" >> mpi_exec_shell
3554	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3555	echo "cpurest=$cpurest" >> mpi_exec_shell
3556	echo "fname=$fname" >> mpi_exec_shell
3557	echo "localhost=$localhost" >> mpi_exec_shell
3558	echo "return_addres=$return_addres" >> mpi_exec_shell
3559	echo "return_username=$return_username" >> mpi_exec_shell
3560	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3561	echo "write_binary=$write_binary" >> mpi_exec_shell
3562	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3563	echo " " >> mpi_exec_shell
3564	echo "export F_ERRCNT" >> mpi_exec_shell
3565	echo "export MPIPROGINV" >> mpi_exec_shell
3566	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3567	echo "export cpurest" >> mpi_exec_shell
3568	echo "export fname" >> mpi_exec_shell
3569	echo "export localhost" >> mpi_exec_shell
3570	echo "export return_addres" >> mpi_exec_shell
3571	echo "export return_username" >> mpi_exec_shell
3572	echo "export tasks_per_node" >> mpi_exec_shell
3573	echo "export write_binary" >> mpi_exec_shell
3574	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3575	echo " " >> mpi_exec_shell
3576	echo "exec ./a.out" >> mpi_exec_shell
3577
3578	chmod u+x mpi_exec_shell
3579	export MPIPROGINF=YES
3580	mpirun -f multinode_config &
3581	wait
3582
3583	fi
3584	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
3585	then
3586
3587	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3588	# DOES NOT EXIST
3589	if [[ $host != lccrayb &&$host != lccrayf && $host != lcsgih && $host != lcsgib && $host != lckyuh && $host != lckyut ]]
3590	then
3591	if [[ -f $hostfile ]]
3592	then
3593	cp $hostfile hostfile
3594	(( ii = $numprocs / $threads_per_task ))
3595	else
3596	(( ii = 1 ))
3597	while (( ii <= $numprocs / $threads_per_task ))
3598	do
3599	echo $localhost_realname >> hostfile
3600	(( ii = ii + 1 ))
3601	done
3602	fi
3603	eval zeile=\"`head -n $ii hostfile`\"
3604	printf "\n *** running on: $zeile"
3605	fi
3606
3607	(( ii = $numprocs / $threads_per_task ))
3608	export OMP_NUM_THREADS=$threads_per_task
3609	# echo "*** OMP_NUM_THREADS=$OMP_NUM_THREADS"
3610	if [[ $threads_per_task != 1 ]]
3611	then
3612	# increase stack size to unlimited, because large runs
3613	# may abort otherwise
3614	ulimit -Ss unlimited
3615	printf "\n threads per task: $threads_per_task stacksize: unlimited"
3616	fi
3617	if [[ $run_coupled_model = false ]]
3618	then
3619	if [[ "$ocean_file_appendix" = true ]]
3620	then
3621	echo "precursor_ocean" > runfile_atmos
3622	else
3623	echo "precursor_atmos" > runfile_atmos
3624	fi
3625	printf "\n\n"
3626	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3627	then
3628	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3629	then
3630	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3631	# export MPI_DSM_DISTRIBUTE=1
3632	# MPI_DSM_CPULIST: pin MPI processes to cores
3633	if [[ $use_openmp = false ]]
3634	then
3635	if [[ "$sgi_feature" = ice2 ]]
3636	then
3637	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
3638	else
3639	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3640	fi
3641	else
3642	unset MPI_DSM_CPULIST
3643	fi
3644	# MPI_IB_RAILS: use both IB rails on ICE2
3645	export MPI_BUFS_PER_HOST=512
3646	export MPI_IB_RAILS=2
3647	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3648	export MPI_CONNECTIONS_THRESHOLD=8192
3649	# echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
3650	export MPI_TYPE_DEPTH=20
3651	# echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
3652	export MPI_GROUP_MAX=64
3653	# echo "*** MPI_GROUP_MAX=$MPI_GROUP_MAX"
3654	if [[ $use_openmp = true ]]
3655	then
3656	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3657	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3658	else
3659	mpiexec_mpt -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3660	fi
3661
3662	# next is test for openmp usage
3663	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3664	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
3665	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3666	then
3667	export MV2_NUM_PORTS=2
3668	# The default setting of MV2_CPU_MAPPING gives best results
3669	# export MV2_ENABLE_AFFINITY=1
3670	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3671	# if [[ "$sgi_feature" = ice2 ]]
3672	# then
3673	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
3674	# else
3675	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3676	# fi
3677	if [[ $use_openmp = true ]]
3678	then
3679	unset MV2_CPU_MAPPING
3680	export MV2_ENABLE_AFFINITY=0
3681	fi
3682	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
3683	echo "*** MV2_ENABLE_AFFINITY=$MV2_ENABLE_AFFINITY"
3684	if [[ $use_openmp = true ]]
3685	then
3686	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3687	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3688	else
3689	mpiexec -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3690	fi
3691	elif [[ "$mpilib" = impi ]]
3692	then
3693	echo "mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos"
3694	mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos
3695	fi
3696	elif [[ $host = lccrayb ]]
3697	then
3698	echo "--- aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos"
3699	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3700	# aprun -n $ii -ss -r2 -j1 a.out $ROPTS < runfile_atmos
3701	elif [[ $host = lccrayf ]]
3702	then
3703	aprun -n $ii -N $tasks_per_node -m ${memory}M a.out $ROPTS < runfile_atmos
3704	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3705	then
3706	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3707	elif [[ $host = lcflow ]]
3708	then
3709	mpirun -bootstrap sge -np $ii -env I_MPI_FABRICS shm:ofa a.out < runfile_atmos $ROPTS
3710	elif [[ $host = lcsb ]]
3711	then
3712	mpirun_rsh -hostfile $PBS_NODEFILE -np `cat $PBS_NODEFILE \| wc -l` a.out < runfile_atmos $ROPTS
3713	elif [[ $host = lckiaps ]]
3714	then
3715	mpirun -np $ii -f $PBS_NODEFILE a.out < runfile_atmos $ROPTS
3716	elif [[ $host = lckyu* ]]
3717	then
3718	mpiexec -n $ii --stdin runfile_atmos ./a.out $ROPTS
3719	else
3720	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3721	fi
3722	else
3723
3724	# currently there is no full MPI-2 support on ICE and XT4
3725	(( iia = $numprocs_atmos / $threads_per_task ))
3726	(( iio = $numprocs_ocean / $threads_per_task ))
3727	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3728	printf "\n using $coupled_mode coupling"
3729	printf "\n\n"
3730
3731	if [[ $coupled_mode = "mpi2" ]]
3732	then
3733	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3734	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3735	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3736	then
3737
3738	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3739	then
3740	# export MPI_LAUNCH_TIMEOUT=360
3741	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3742	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3743	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3744	then
3745	# ulimit -s 300000 # A too large stack size causes problems
3746	# export MV2_NUM_PORTS=2
3747	# export MV2_CPU_MAPPING=0:1:2:3
3748	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3749	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3750	fi
3751
3752	elif [[ $host = lccrayf \|\| $host = lcxe6 \|\| $host = lcxt5m ]]
3753	then
3754
3755	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3756	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3757
3758	else
3759	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3760	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3761	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3762	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3763	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3764	fi
3765	wait
3766
3767	else
3768
3769	echo "coupled_run $iia $iio" > runfile_atmos
3770	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3771	then
3772
3773	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3774	then
3775	# export MPI_LAUNCH_TIMEOUT=360
3776	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3777	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3778	then
3779	# ulimit -s 300000 # A too large stack size causes problems
3780	# export MV2_NUM_PORTS=2
3781	# export MV2_CPU_MAPPING=0:1:2:3
3782	mpiexec ./a.out $ROPTS < runfile_atmos
3783	fi
3784
3785	elif [[ $host = lccrayf \|\| $host = lcxe6 \|\| $host = lcxt5m ]]
3786	then
3787
3788	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3789
3790	elif [[ $host = lck \|\| $host = lckordi ]]
3791	then
3792
3793	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3794
3795	elif [[ $host = lckyu* ]]
3796	then
3797
3798	mpiexec -n $ii --stdin runfile_atmos ./a.out $ROPTS
3799
3800	fi
3801	wait
3802	fi
3803
3804	fi
3805	elif [[ $host = lckyoto ]]
3806	then
3807	set -xv
3808	export P4_RSHCOMMAND=plesh
3809	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
3810	if [[ "$ENVIRONMENT" = BATCH ]]
3811	then
3812	if [[ "$cond2" = fujitsu ]]
3813	then
3814	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
3815	elif [[ "cond2" = pgi ]]
3816	then
3817	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
3818	else
3819	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
3820	fi
3821	else
3822	if [[ "$cond2" = "" ]]
3823	then
3824	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
3825	else
3826	mpirun -np $numprocs ./a.out $ROPTS
3827	fi
3828	fi
3829	set +xv
3830	elif [[ $host = lctit ]]
3831	then
3832	export OMP_NUM_THREADS=$threads_per_task
3833	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3834	if [[ "$threads_per_task" != 1 ]]
3835	then
3836	export MV2_ENABLE_AFFINITY=0
3837	fi
3838	echo "----- PBS_NODEFILE content:"
3839	cat $PBS_NODEFILE
3840	echo "-----"
3841	(( ii = $numprocs / $threads_per_task ))
3842	echo "mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS"
3843	mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS
3844	else
3845	mpprun -n $numprocs a.out $ROPTS
3846	fi
3847	[[ $? != 0 ]] && execution_error=true
3848
3849
3850	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3851	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3852	then
3853	apprentice
3854	fi
3855	else
3856	a.out $ROPTS
3857	fi
3858	fi
3859	if [[ $? != 0 \|\| $execution_error = true ]]
3860	then
3861
3862	# ABBRUCH BEI LAUFZEITFEHLER
3863	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3864	printf "\n +++ runtime error occured"
3865	locat=execution
3866	exit
3867	else
3868	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3869	printf "\n$striche\n *** execution finished \n"
3870
3871	# Stop the dvr streaming server and process the dvr output in order
3872	# to create dvrs- and html-files containing all streams
3873	if [[ "$dvrserver_id" != "" ]]
3874	then
3875	kill $dvrserver_id
3876	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3877
3878	# If there is a directory, data have been output by the
3879	# streaming server. Otherwise, user has chosen dvrp_output=local
3880	if [[ -d DATA_DVR ]]
3881	then
3882
3883	# Add the current dvr configuration file to the dvr output
3884	# directory
3885	cp .dvrserver.config DATA_DVR
3886
3887	# Process the dvr output (option -s for also generating
3888	# sequence mode data)
3889	process_dvr_output -d DATA_DVR -f $fname -s
3890
3891	else
3892
3893	# Process the local output
3894	process_dvr_output -l -d DATA_DVR -f $fname
3895
3896	fi
3897
3898	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3899	then
3900
3901	# Process dvr output generated in local mode (dvrp_output=local)
3902	process_dvr_output -l -d DATA_DVR -f $fname
3903
3904	fi
3905	fi
3906
3907
3908
3909	# Call of combine_plot_fields in order to merge single files written
3910	# by each PE into one file.
3911	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
3912	then
3913	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
3914	printf "\n 2d- and/or 3d-data may be incomplete!"
3915	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
3916	elif [[ "$combine_plot_fields" == true ]]
3917	then
3918	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
3919	combine_plot_fields${block}.x
3920	else
3921	# Temporary solution to skip combine_plot_fields. This is necessary in case of huge amount of
3922	# data output. To do: extend this branch by creating a batch job for combine_plot_fields.
3923	printf "\n\n\n *** post-processing: skipping combine_plot_fields (-Z option set) ..."
3924	fi
3925
3926
3927
3928	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3929	(( i = 0 ))
3930	while (( i < ioc ))
3931	do
3932	(( i = i + 1 ))
3933	if (( i == 1 ))
3934	then
3935	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
3936	fi
3937	printf "\n >>> ${out_command[$i]}"
3938	eval ${out_command[$i]}
3939	if (( i == ioc ))
3940	then
3941	printf "\n$striche\n"
3942	fi
3943	done
3944
3945
3946	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
3947	if [[ $do_trace = true ]]
3948	then
3949	printf "\n\n"
3950	ls -al
3951	fi
3952
3953
3954
3955	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
3956	(( i = 0 ))
3957	while (( i < iout ))
3958	do
3959	(( i = i + 1 ))
3960	if (( i == 1 ))
3961	then
3962	printf "\n\n *** saving OUTPUT-files:\n$striche"
3963	fi
3964
3965	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3966	files_for_pes=false; filetyp=file
3967	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
3968	then
3969	files_for_pes=true; filetyp=directory
3970	actionout[$i]=""
3971	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
3972	then
3973	actionout[$i]=""
3974	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
3975	then
3976	files_for_pes=true; filetyp=directory
3977	actionout[$i]="ar"
3978	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
3979	then
3980	actionout[$i]="ar"
3981	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
3982	then
3983	files_for_pes=true; filetyp=directory
3984	actionout[$i]="fl"
3985	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
3986	then
3987	actionout[$i]="fl"
3988	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
3989	then
3990	files_for_pes=true; filetyp=directory
3991	actionout[$i]="tr"
3992	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
3993	then
3994	actionout[$i]="tr"
3995	fi
3996
3997	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
3998	then
3999	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
4000	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
4001	then
4002	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
4003	else
4004
4005
4006	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
4007	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
4008	# REMOTE-RECHNUNGEN
4009	if [[ "${actionout[$i]}" = tr ]]
4010	then
4011	if [[ $localhost != $fromhost ]]
4012	then
4013	if [[ $files_for_pes = false ]]
4014	then
4015	cps=""
4016	cst=""
4017	else
4018	cps=-c
4019	cst="/"
4020	fi
4021	if [[ $localhost = nech ]]
4022	then
4023
4024	# TRANSFER IN EIGENSTAENDIGEM JOB
4025	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4026	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4027	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4028	if [[ $files_for_pes = false ]]
4029	then
4030	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4031	else
4032	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
4033	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
4034	fi
4035
4036	echo "set -x" > transfer_${localout[$i]}
4037	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4038
4039	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
4040	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
4041	printf "\n or higher cycle\n"
4042	echo "batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4043
4044	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4045
4046	if [[ $localhost = nech ]]
4047	then
4048	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
4049	else
4050	if [[ "$LOGNAME" = b323013 ]]
4051	then
4052	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4053	else
4054	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4055	fi
4056	fi
4057
4058	else
4059
4060	# TRANSFER INNERHALB DIESES JOBS
4061	transfer_failed=false
4062	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
4063	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
4064	batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4065	[[ $? != 0 ]] && transfer_failed=true
4066
4067	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4068	# LOKALER MASCHINE ANLEGEN
4069	if [[ $transfer_failed = true ]]
4070	then
4071	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4072	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4073
4074	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4075	# ANLEGEN.
4076	eval local_catalog=${pathout[$i]}
4077	if [[ ! -d $local_catalog ]]
4078	then
4079	printf " *** local directory does not exist. Trying to create:\n"
4080	printf " $local_catalog \n"
4081	mkdir -p $local_catalog
4082	fi
4083	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4084	transfer_problems=true
4085	fi
4086	fi
4087	else
4088
4089	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
4090	actionout[$i]=""
4091	fi
4092	fi
4093
4094
4095	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
4096	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
4097	# REMOTE-RECHNUNGEN
4098	if [[ "${actionout[$i]}" = tra ]]
4099	then
4100	if [[ $localhost != $fromhost ]]
4101	then
4102	if [[ $localhost = ibmh \|\| $localhost = nech ]]
4103	then
4104
4105	# TRANSFER IN EIGENSTAENDIGEM JOB
4106	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4107	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4108	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4109	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4110
4111	echo "set -x" > transfer_${localout[$i]}
4112	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4113
4114	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
4115	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
4116	printf "\n or higher cycle\n"
4117	echo "batch_scp $PORTOPT -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4118
4119	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4120
4121	if [[ $localhost = nech ]]
4122	then
4123	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
4124	else
4125	if [[ $LOGNAME = b323013 ]]
4126	then
4127	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4128	else
4129	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4130	fi
4131	fi
4132
4133	else
4134
4135	# TRANSFER INNERHALB DIESES JOBS
4136	transfer_failed=false
4137	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
4138	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
4139	batch_scp $PORTOPT -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4140	[[ $? != 0 ]] && transfer_failed=true
4141
4142	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4143	# LOKALER MASCHINE ANLEGEN
4144	if [[ $transfer_failed = true ]]
4145	then
4146	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4147	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4148
4149	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4150	# ANLEGEN
4151	eval local_catalog=${pathout[$i]}
4152	if [[ ! -d $local_catalog ]]
4153	then
4154	printf " *** local directory does not exist. Trying to create:\n"
4155	printf " $local_catalog \n"
4156	mkdir -p $local_catalog
4157	fi
4158
4159	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4160	transfer_problems=true
4161	fi
4162	fi
4163	else
4164
4165	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
4166	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
4167	actionout[$i]=a
4168	fi
4169	fi
4170
4171
4172	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
4173	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
4174	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
4175	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
4176	if [[ "${actionout[$i]}" = fl ]]
4177	then
4178	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4179	chmod g+rx $tmp_data_catalog
4180	if [[ $files_for_pes = false ]]
4181	then
4182	printf "\n >>> OUTPUT: ${localout[$i]} to"
4183	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4184	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
4185	else
4186	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
4187	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4188	mkdir $tmp_data_catalog/${frelout[$i]}
4189	cd ${localout[$i]}
4190	for file in $(ls *)
4191	do
4192	ln -f $file $tmp_data_catalog/${frelout[$i]}
4193	done
4194	cd $TEMPDIR
4195	fi
4196
4197
4198	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
4199	if [[ $store_on_archive_system = true ]]
4200	then
4201
4202	if [[ $archive_system = asterix ]]
4203	then
4204	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4205	if [[ $files_for_pes = false ]]
4206	then
4207	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4208	else
4209	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4210	fi
4211	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4212	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
4213	echo "then" >> archive_${frelout[$i]}
4214	echo " do_stageout=false" >> archive_${frelout[$i]}
4215	echo "else" >> archive_${frelout[$i]}
4216	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
4217	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
4218	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
4219	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
4220	if [[ $files_for_pes = false ]]
4221	then
4222	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
4223	else
4224	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
4225	fi
4226	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
4227	echo "fi" >> archive_${frelout[$i]}
4228	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4229	elif [[ $archive_system = DMF ]]
4230	then
4231	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4232	if [[ $files_for_pes = false ]]
4233	then
4234	printf "\n +++ archiving of single files impossible with $archive_system !\n"
4235	locat=DMF
4236	exit
4237	else
4238	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
4239	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
4240	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
4241	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
4242	fi
4243	elif [[ $archive_system = tivoli ]]
4244	then
4245	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4246	if [[ $files_for_pes = false ]]
4247	then
4248	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4249	echo "set -x" >> archive_${frelout[$i]}
4250	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4251	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4252	else
4253
4254	echo "set -x" >> archive_${frelout[$i]}
4255	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
4256	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4257	cd $tmp_data_catalog
4258	all_files=`ls -1 ${frelout[$i]}/*`
4259	cd - > /dev/null
4260	(( inode = 0 ))
4261	(( tp1 = tasks_per_node + 1 ))
4262	while (( inode < nodes ))
4263	do
4264	# echo "*** all_files = \"$all_files\" "
4265	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4266	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4267	# echo "*** tasks_per_node = \"$tasks_per_node\" "
4268	# echo "*** files = \"$files\" "
4269	# echo "*** all_files = \"$all_files\" "
4270	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4271	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4272	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
4273	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4274	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4275	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4276	(( inode = inode + 1 ))
4277	done
4278	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4279	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4280	fi
4281	elif [[ $archive_system = ut ]]
4282	then
4283	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4284	if [[ $files_for_pes = false ]]
4285	then
4286	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4287	echo "set -x" >> archive_${frelout[$i]}
4288	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4289	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4290	else
4291
4292	echo "set -x" >> archive_${frelout[$i]}
4293	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
4294	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
4295	cd $tmp_data_catalog
4296	all_files=`ls -1 ${frelout[$i]}/*`
4297	cd - > /dev/null
4298	(( inode = 0 ))
4299	(( tp1 = tasks_per_node + 1 ))
4300	while (( inode < nodes ))
4301	do
4302	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4303	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4304	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4305	(( inode = inode + 1 ))
4306	done
4307	fi
4308	elif [[ $archive_system = none ]]
4309	then
4310	printf " +++ archiving on $localhost not available!\n"
4311	fi
4312
4313	if [[ $archive_system != none ]]
4314	then
4315	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
4316	then
4317	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4318	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4319	elif [[ $localhost = nech ]]
4320	then
4321	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
4322	fi
4323	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4324	fi
4325	else
4326	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
4327	fi
4328
4329
4330	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
4331	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4332	if [[ $files_for_pes = false ]]
4333	then
4334	cat /dev/null > ${pathout[$i]}
4335	else
4336	mkdir -p ${pathout[$i]}
4337	fi
4338
4339	fi
4340
4341
4342	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
4343	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
4344	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4345	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
4346	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
4347	# GEMAESSEN ARCHIVIERUNGEN GESETZT
4348	if [[ "${actionout[$i]}" = ar ]]
4349	then
4350	if [[ $files_for_pes = false ]]
4351	then
4352	printf "\n >>> OUTPUT: ${localout[$i]} to"
4353	printf "\n ${pathout[$i]}"
4354	printf "\n File will be copied to archive-system ($archive_system) !\n"
4355	else
4356	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
4357	printf "\n ${pathout[$i]}"
4358	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
4359	fi
4360	mv ${localout[$i]} ${frelout[$i]}
4361
4362	file_saved=false
4363
4364	if [[ $archive_system = asterix ]]
4365	then
4366	do_stageout=true
4367	(( stageout_anz = 0 ))
4368	while [[ $do_stageout = true ]]
4369	do
4370	if [[ $files_for_pes = false ]]
4371	then
4372	stageout ${frelout[$i]} > STAGE_OUTPUT
4373	else
4374	stageout -t ${frelout[$i]} > STAGE_OUTPUT
4375	fi
4376	cat STAGE_OUTPUT
4377	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
4378	then
4379	file_saved=true
4380	do_stageout=false
4381	else
4382	if [[ $files_for_pes = false ]]
4383	then
4384	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
4385	else
4386	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
4387	fi
4388	(( stageout_anz = stageout_anz + 1 ))
4389	if (( stageout_anz == 10 ))
4390	then
4391	printf "\n +++ stoped after 10 unsuccessful tries!"
4392	archive_save=false
4393	do_stageout=false
4394	else
4395	printf "\n *** new try to store on archive after 15 min:"
4396	sleep 900
4397	fi
4398	fi
4399	done
4400	elif [[ $archive_system = DMF ]]
4401	then
4402	if [[ $files_for_pes = false ]]
4403	then
4404	printf "\n +++ archiving of single files impossible on $archive_system!\n"
4405	locat=DMF
4406	exit
4407	else
4408	rm -rf $ARCHIVE/${frelout[$i]}
4409	cp -r ${frelout[$i]} $ARCHIVE
4410	fi
4411	file_saved=true
4412	elif [[ $archive_system = tivoli ]]
4413	then
4414	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4415	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4416	# GELEGT WERDEN
4417	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4418	chmod g+rx $tmp_data_catalog
4419	if [[ $files_for_pes = false ]]
4420	then
4421	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4422	else
4423	mkdir $tmp_data_catalog/${frelout[$i]}
4424	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4425	fi
4426
4427	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4428	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4429	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4430	if [[ $files_for_pes = false ]]
4431	then
4432	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4433	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4434	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4435	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4436	else
4437	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4438	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4439	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4440	fi
4441
4442	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4443	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4444	file_saved=true
4445
4446	elif [[ $archive_system = ut ]]
4447	then
4448	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4449	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4450	# GELEGT WERDEN
4451	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4452	chmod g+rx $tmp_data_catalog
4453	if [[ $files_for_pes = false ]]
4454	then
4455	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4456	else
4457	mkdir $tmp_data_catalog/${frelout[$i]}
4458	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4459	fi
4460
4461	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4462	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4463	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4464	if [[ $files_for_pes = false ]]
4465	then
4466	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4467	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4468	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4469	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4470	else
4471	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4472	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4473	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4474	fi
4475
4476	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
4477	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4478	file_saved=true
4479
4480	else
4481	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
4482	archive_save=false
4483	fi
4484	if [[ $file_saved = true ]]
4485	then
4486	if [[ $files_for_pes = false ]]
4487	then
4488	cat /dev/null > ${pathout[$i]}
4489	else
4490	mkdir -p ${pathout[$i]}
4491	fi
4492	fi
4493	fi
4494
4495	# APPEND AUF LOKALER MASCHINE
4496	if [[ "${actionout[$i]}" = "a" ]]
4497	then
4498	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4499	then
4500	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}.${extout[$i]}\n"
4501	cat ${localout[$i]} >> ${pathout[$i]}.${extout[$i]}
4502	else
4503	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
4504	cat ${localout[$i]} >> ${pathout[$i]}
4505	fi
4506	fi
4507
4508	# KOPIEREN AUF LOKALER MASCHINE
4509	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
4510	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
4511	then
4512
4513	# KOPIEREN AUF EINPROZESSORMASCHINE
4514	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4515	then
4516	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
4517	if [[ $link_local_output = true ]]
4518	then
4519	printf " using ln -f\n"
4520	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4521	fi
4522	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4523	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
4524	then
4525	if [[ $link_local_output = true ]]
4526	then
4527	printf " ln failed, using cp...\n"
4528	fi
4529	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4530	fi
4531	else
4532	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
4533	if [[ $link_local_output = true ]]
4534	then
4535	printf " using ln -f\n"
4536	ln -f ${localout[$i]} ${pathout[$i]}
4537	fi
4538	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4539	if [[ ! -f "${pathout[$i]}" ]]
4540	then
4541	if [[ $link_local_output = true ]]
4542	then
4543	printf " ln failed, using cp...\n"
4544	fi
4545	cp ${localout[$i]} ${pathout[$i]}
4546	fi
4547	fi
4548
4549	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
4550	then
4551
4552	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
4553	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
4554	# WIRD DANN KOPIERT
4555	# PER MOVE UMBENANNT WERDEN
4556	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4557	if [[ $link_local_output = true ]]
4558	then
4559	printf " using ln -f\n"
4560	mkdir ${pathout[$i]}
4561	cd ${localout[$i]}
4562	for file in $(ls *)
4563	do
4564	ln -f $file ${pathout[$i]}
4565	done
4566	cd $TEMPDIR
4567	fi
4568	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4569	if [[ ! -f "${pathout[$i]}/_0000" ]]
4570	then
4571	if [[ $link_local_output = true ]]
4572	then
4573	printf " ln failed for .../_0000, using cp...\n"
4574	fi
4575	cp -r ${localout[$i]} ${pathout[$i]}
4576	fi
4577
4578	fi
4579	fi
4580	done
4581	if (( i != 0 ))
4582	then
4583	if [[ $transfer_problems = true ]]
4584	then
4585	printf "\n$striche\n *** OUTPUT-files saved"
4586	printf "\n +++ WARNING: some data transfers failed! \n"
4587	else
4588	printf "\n$striche\n *** all OUTPUT-files saved \n"
4589	fi
4590	fi
4591
4592
4593	# EVENTUELL FOLGEJOB STARTEN
4594	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4595	if [[ -f CONTINUE_RUN ]]
4596	then
4597
4598	if [[ $archive_save = true ]]
4599	then
4600
4601	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4602	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4603	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4604	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4605	# HANDEN
4606	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4607	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4608	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4609	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4610	then
4611	mc=`echo $mc \| sed 's/#/f/g'`
4612	fi
4613
4614
4615	# JOB STARTEN
4616	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4617	echo " $mc"
4618	printf "\n$striche\n"
4619	if [[ $localhost != $fromhost ]]
4620	then
4621
4622	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibms \|\| $localhost = lcflow \|\| $localhost = lckyu* ]]
4623	then
4624	echo "*** ssh will be used to initiate restart-runs!"
4625	echo " return_addres=\"$return_addres\" "
4626	echo " return_username=\"$return_username\" "
4627	if [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4628	then
4629	if [[ $localhost = ibmh ]]
4630	then
4631	ssh $SSH_PORTOPT $usern@136.172.40.15 "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4632	else
4633	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4634	fi
4635	else
4636	if [[ $localhost = ibmkisti ]]
4637	then
4638	ssh $SSH_PORTOPT $usern@gaiad "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4639	else
4640	if [[ $localhost = lcflow ]]
4641	then
4642	/usr/bin/ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4643	else
4644	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4645	fi
4646	fi
4647	fi
4648	else
4649	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4650	locat=restart; exit
4651	fi
4652
4653	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4654	# DER AKTUELLE JOB ENDET
4655	if [[ $queue = special1q ]]
4656	then
4657	sleep 120
4658	else
4659	sleep 30
4660	fi
4661
4662	else
4663
4664	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4665	# RUFEN WERDEN, AUSSER AUF lcfimm
4666	cd $LOCAL_PWD
4667	if [[ $localhost = lcfimm ]]
4668	then
4669	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4670	elif [[ $localhost = lckyuh ]]
4671	then
4672	printf "\n +++ WARNING: no restart mechanism available for host \"$localhost\" "
4673	printf "\n please restart job manually using command:\n"
4674	printf "\n \"$mc\" "
4675	else
4676	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4677	fi
4678	cd - > /dev/null
4679	fi
4680	if [[ $localhost = lckyuh ]]
4681	then
4682	printf "\n$striche\n *** restart-run to be initiated manually\n"
4683	else
4684	printf "\n$striche\n *** restart-run initiated \n"
4685	fi
4686
4687
4688	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4689	# GEHOLT WORDEN SIND, LOESCHEN
4690	(( i = 0 ))
4691	while (( i < iin ))
4692	do
4693	(( i = i + 1 ))
4694	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4695	then
4696	rm -r $tmp_data_catalog/${frelin[$i]}
4697	fi
4698	done
4699
4700	else
4701
4702	printf "\n +++ no restart-run possible, since errors occured"
4703	printf "\n during the archive process"
4704	fi
4705
4706	fi
4707
4708
4709
4710	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4711	if [[ "$email_notification" != "none" ]]
4712	then
4713
4714	if [[ $localhost != $fromhost ]]
4715	then
4716	if [[ -f CONTINUE_RUN ]]
4717	then
4718	echo "PALM restart run necessary" > email_text
4719	echo "description header of actual run:" >> email_text
4720	cat CONTINUE_RUN >> email_text
4721	echo "mrun-command to restart:" >> email_text
4722	echo "$mc" >> email_text
4723	else
4724	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4725	fi
4726	mail $email_notification < email_text
4727	printf "\n *** email notification sent to \"$email_notification\" "
4728	fi
4729	fi
4730
4731
4732
4733	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4734	cd $HOME
4735	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4736
4737	else
4738
4739
4740	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4741	# CHENDE AKTIONEN DURCHGEFUEHRT
4742
4743	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4744	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
4745	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4746	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4747	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4748	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4749	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4750	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4751	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4752	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4753	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4754	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4755	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4756	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4757	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4758	if [[ $use_openmp = true ]]
4759	then
4760	mrun_com=${mrun_com}" -O $threads_per_task"
4761	fi
4762	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4763	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
4764	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4765	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4766	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4767	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4768	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4769	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4770	[[ "$check_namelist_files" = false ]] && mrun_com=${mrun_com}" -z"
4771	[[ "$combine_plot_fields" = false ]] && mrun_com=${mrun_com}" -Z"
4772	[[ "$max_par_io_str" != "" ]] && mrun_com=${mrun_com}" -w $max_par_io_str"
4773	if [[ $do_remote = true ]]
4774	then
4775	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4776	fi
4777
4778
4779	# create executable for batch job
4780	if [[ $create_executable_for_batch = true && $restart_run != true ]]
4781	then
4782
4783	printf "\n *** creating the executable for batch job\n"
4784
4785	# method only works for batch jobs on local hosts
4786	if [[ $host != $localhost ]]
4787	then
4788	printf "\n +++ creation of executables is only allowed for batch jobs on local hosts."
4789	printf "\n Please set create_executable_for_batch = false in the config-file.\n"
4790	locat=create_executable; exit
4791	fi
4792
4793	mkdir $working_directory/SOURCES_FOR_RUN_${fname}/TMPDIR_FOR_CREATING_EXECUTABLE
4794	cd $working_directory/SOURCES_FOR_RUN_${fname}/TMPDIR_FOR_CREATING_EXECUTABLE
4795
4796	cp $make_depository .
4797	tar -xf $make_depository > /dev/null 2>&1
4798	cp ../* . > /dev/null 2>&1
4799
4800	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
4801
4802	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
4803	then
4804	printf "\n +++ error occured while compiling or linking"
4805	locat=compile
4806	exit
4807	fi
4808
4809	mv a.out ..
4810	cd - > /dev/null 2>&1
4811	rm -rf $working_directory/SOURCES_FOR_RUN_${fname}/TMPDIR_FOR_CREATING_EXECUTABLE
4812
4813	printf " *** executable created in \"$working_directory/SOURCES_FOR_RUN_${fname}\"\n "
4814
4815	fi
4816
4817
4818	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4819	jobfile=jobfile.$RANDOM
4820
4821
4822	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4823	echo "mkdir $TEMPDIR" >> $jobfile
4824	echo "cd $TEMPDIR" >> $jobfile
4825
4826
4827	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4828	if [[ $do_trace = true ]]
4829	then
4830	echo "set -x" >> $jobfile
4831	else
4832	echo "set +vx" >> $jobfile
4833	fi
4834
4835
4836	# initialize the environment and load modules
4837	if [[ "$init_cmds" != "" ]]
4838	then
4839	echo "$init_cmds" >> $jobfile
4840	fi
4841	if [[ "$module_calls" != "" ]]
4842	then
4843	echo "$module_calls" >> $jobfile
4844	fi
4845
4846
4847	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4848	# DATEI FUER DEN JOB
4849	if [[ $( echo $host \| cut -c1-5 ) = lcsgi \|\| $host = ibmkisti \|\| $host = lccrayb \|\| $host = lccrayf ]]
4850	then
4851
4852	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4853	# KOPIEREN
4854	if [[ $restart_run != true ]]
4855	then
4856	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4857	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4858	fi
4859
4860	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4861	# (BEI JOBS AUF LOKALEM RECHNER REICHT CP)
4862	echo "set -x" >> $jobfile
4863	if [[ $host = $localhost ]]
4864	then
4865
4866	# DUE TO UNKNOWN REASONS, COPY WITH cp COMMAND CREATES CORRUPT
4867	# FILES ON CRAY XC30 SYSTEMS (CSC HELSINKI), rsync IS USED INSTEAD
4868	echo "rsync -ae -t $working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4869
4870	else
4871	if [[ $host != ibmkisti ]]
4872	then
4873	echo "scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4874	else
4875	# on KISTI's IBM firewall is only opened on interactive node
4876	echo "localdir=\`pwd\`" >> $jobfile
4877	echo "ssh $SSH_PORTOPT $remote_username@gaiad \"cd \$localdir; scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
4878	fi
4879	fi
4880	echo "export SOURCES_COMPLETE=true" >> $jobfile
4881
4882	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4883	# ARBEITSVERZEICHNIS VERSCHIEBEN
4884	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4885	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4886	echo "chmod u+rwx $mrun_script_name" >> $jobfile
4887	echo "execute_mrun=true" >> $jobfile
4888	echo " " >> $jobfile
4889
4890	else
4891
4892	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4893	# SOWIE GEGEBENENFALLS DES MAKEFILES
4894	if [[ $do_compile = true ]]
4895	then
4896
4897	source_catalog=SOURCES_FOR_RUN_$fname
4898
4899	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4900	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4901	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4902	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4903	echo "export SOURCES_COMPLETE=true" >> $jobfile
4904	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4905
4906	for filename in $source_list
4907	do
4908	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4909	echo "cat > $filename << \"%END%\"" >> $jobfile
4910	cat $source_catalog/$filename >> $jobfile
4911	echo " " >> $jobfile
4912	echo "%END%" >> $jobfile
4913	echo " " >> $jobfile
4914	done
4915
4916	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4917	echo "cat > Makefile << \"%END%\"" >> $jobfile
4918	cat $source_catalog/Makefile >> $jobfile
4919	echo " " >> $jobfile
4920	echo "%END%" >> $jobfile
4921	echo " " >> $jobfile
4922
4923	echo "cd - > /dev/null" >> $jobfile
4924
4925	fi
4926
4927
4928	# ABSPEICHERN DER KONFIGURATIONSDATEI
4929	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4930	# Lines with #$ coming from the svn keyword substitution are
4931	# removed from the config file in order to avoid problems
4932	# with the SGE batch system
4933	echo "cat > $config_file << \"%END%\"" >> $jobfile
4934	if [[ $host = lckyuh ]]
4935	then
4936	# no cross compiler on compute node
4937	sed 's/frtpx/frt/g' $config_file >> $jobfile
4938	else
4939	sed 's/#$.*//g' $config_file >> $jobfile
4940	fi
4941	echo "%END%" >> $jobfile
4942	echo " " >> $jobfile
4943
4944
4945	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
4946	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4947	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
4948	if [[ $host = lckyuh ]]
4949	then
4950	sed 's/\/bin\/ksh/\/bin\/bash/g' ${PALM_BIN}/$mrun_script_name >> $jobfile
4951	else
4952	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
4953	fi
4954	echo "%END%" >> $jobfile
4955	echo "chmod u+x $mrun_script_name" >> $jobfile
4956	echo "execute_mrun=true" >> $jobfile
4957	echo " " >> $jobfile
4958
4959	fi
4960
4961
4962	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
4963	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
4964	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
4965	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
4966	if [[ $do_remote = true ]]
4967	then
4968	(( i = 0 ))
4969	while (( i < iin ))
4970	do
4971	(( i = i + 1 ))
4972	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
4973	if [[ "${transin[$i]}" = job ]]
4974	then
4975	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
4976	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
4977	echo " " >> $jobfile
4978	echo "%END%" >> $jobfile
4979	else
4980	echo "batch_scp $PORTOPT -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
4981	fi
4982
4983	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
4984	echo "if [[ \$? = 1 ]]" >> $jobfile
4985	echo "then" >> $jobfile
4986	echo " echo \" \" " >> $jobfile
4987	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
4988	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
4989	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
4990	echo " execute_mrun=false" >> $jobfile
4991	echo "fi" >> $jobfile
4992	done
4993	fi
4994
4995	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
4996	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
4997	echo "LOCAL_PWD=$working_directory" >> $jobfile
4998	echo "export LOCAL_PWD" >> $jobfile
4999
5000	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
5001	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
5002	echo "export LOCAL_MRUN_PATH" >> $jobfile
5003
5004	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
5005	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
5006	then
5007	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
5008	elif [[ $host = lcflow \|\| $localhost = lcflow ]]
5009	then
5010	echo "export PALM_BIN=$PALM_BIN" \| sed -e 's:'$HOME':$HOME:' >> $jobfile
5011	echo "export PATH=\$PATH:\$PALM_BIN" >> $jobfile
5012	fi
5013
5014	# MRUN AUF ZIELRECHNER AUFRUFEN (queue is workaround for ibmkisti)
5015	echo "set -x" >> $jobfile
5016	echo "queue=$queue" >> $jobfile
5017	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
5018	echo 'ls -al; echo `pwd`' >> $jobfile
5019	echo "cd \$HOME" >> $jobfile
5020	echo "rm -rf $TEMPDIR" >> $jobfile
5021
5022
5023
5024
5025	# JOB PER SUBJOB STARTEN
5026	if [[ $silent = false ]]
5027	then
5028	printf "\n "
5029	else
5030	printf "\n\n"
5031	fi
5032
5033	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $PORTOPT $jobfile
5034	rm -rf $jobfile
5035
5036
5037	fi # ENDE REMOTE-TEIL
5038
5039
5040
5041	# ENDE DER PROZEDUR

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