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source: palm/trunk/SCRIPTS/mrun @ 1191

Last change on this file since 1191 was 1191, checked in by heinze, 11 years ago
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1	#!/bin/ksh
2
3	# mrun - script for running PALM jobs
4
5	#--------------------------------------------------------------------------------#
6	# This file is part of PALM.
7	#
8	# PALM is free software: you can redistribute it and/or modify it under the terms
9	# of the GNU General Public License as published by the Free Software Foundation,
10	# either version 3 of the License, or (at your option) any later version.
11	#
12	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
13	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
14	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
15	#
16	# You should have received a copy of the GNU General Public License along with
17	# PALM. If not, see <http://www.gnu.org/licenses/>.
18	#
19	# Copyright 1997-2012 Leibniz University Hannover
20	#--------------------------------------------------------------------------------#
21	#
22	# Current revisions:
23	# ------------------
24	#
25	#
26	# Former revisions:
27	# -----------------
28	# $Id: mrun 1191 2013-06-25 09:42:09Z heinze $
29	#
30	# 1190 2013-06-25 09:39:21Z heinze
31	# enable use of automatic restarts for ibmh
32	# use of cluster/express queue enabled (ibmh)
33	#
34	# 1124 2013-04-09 15:46:52Z raasch
35	# variable "memory" is exported via typeset option -x, because otherwise an unknown
36	# side effect may lead to data loss while getopts is reading the script-option arguments
37	#
38	# 1122 2013-04-09 08:37:16Z heinze
39	# Bugfix: change type of variable last_char
40	#
41	# 1119 2013-04-05 15:11:19Z raasch
42	# Bugfix for setting -T option for subjob
43	#
44	# 1108 2013-03-05 07:03:32Z raasch
45	# bugfix for coupled runs on lckyut/lckyuh
46	#
47	# 1106 2013-03-04 05:31:38Z raasch
48	# --stdin argument for mpiexec on lckyuh
49	# -y and -Y settings output to header
50	#
51	# 1103 2013-02-20 02:15:53Z raasch
52	# default script runs again under ksh, because of unsolved problems with read
53	# from stdin: when bash script is called from a ksh, message "read error: 0:
54	# Resource temporarily unavailable" appears and script does not stop,
55	# further bash compatibility adjustments,
56	# shebang line replaced by /bin/bash when running jobs on lckyuh; no restarts
57	# on lckyuh, but mrun does not terminate and issues a warning instead
58	#
59	# 1101 2013-02-17 10:20:21Z raasch
60	# script now running under bash instead of ksh, which required small adjustments
61	# (output formatting with printf instead "typeset -L/-R", print replaced by echo,
62	# read from stdin),
63	# cross compilername on lckyuh compute nodes replaced by real compiler name
64	#
65	# 1099 2013-02-10 01:47:43Z raasch
66	# adjustments for Kyushu-University computing center (lckyuh - hayaka)
67	# and for Forwind cluster (lcflow)
68	# small further adjustments for lckyut
69	#
70	# 1094 2013-02-03 01:52:12Z raasch
71	# explicit ssh/scp port can be set in config file with environment variable
72	# scp_port. This port is handled to all ssh/scp/batch_scp calls.
73	# decalpha parts (yonsei) removed
74	#
75	# 2013-02-02 07:06:13Z raasch
76	# adjustments for Kyushu-University computing center (lckyut - tatara)
77	#
78	# 1083 2013-01-04 10:22:09Z maronga
79	# bugfix in parameter file check (read %cpp_options was missing)
80	#
81	# 1069 2012-11-28 16:18:43Z maronga
82	# bugfix: coupling mode was always set to mpi2, typos removed
83	#
84	# 1058 2012-11-21 07:00:35Z raasch
85	# Intel inspector (inspxe) is given the number of PEs instead of the number of
86	# nodes
87	#
88	# 1046 2012-11-09 14:38:45Z maronga
89	# code put under GPL (PALM 3.9)
90	#
91	# 21/03/94 - Siggi - first version finished
92	# 03/03/94 - Siggi - script development started
93	#
94	#--------------------------------------------------------------------------------#
95	# mrun - script for running PALM jobs
96	#--------------------------------------------------------------------------------#
97
98
99
100	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
101
102	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
103	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
104	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
105
106	AddFilenames=""
107	additional_conditions=""
108	add_source_path=""
109	afname=""
110	archive_save=true
111	archive_system=none
112	check_namelist_files=true
113	combine_plot_fields=true
114	compiler_name=""
115	cond1=""
116	cond2=""
117	config_file=.mrun.config
118	coupled_dist=""
119	coupled_mode="mpi1"
120	cpp_opts=""
121	cpp_options=""
122	cpumax=0
123	cpurest=0
124	delete_temporary_catalog=true
125	do_batch=false
126	do_compile=true
127	do_remote=false
128	do_stagein=true
129	do_stageout=true
130	do_trace=false
131	email_notification="none"
132	exclude=""
133	executable=""
134	execution_error=false
135	fimm=false
136	fname=test
137	fromhost=""
138	global_revision=""
139	group_number=none
140	host=""
141	host_file=""
142	hp=""
143	ignore_archive_error=false
144	input_list=""
145	interpreted_config_file=""
146	job_catalog="~/job_queue"
147	job_on_file=""
148	keep_data_from_previous_run=false
149	link_local_input=false
150	link_local_output=false
151	localhost_realname=$(hostname)
152	local_compile=false
153	local_dvrserver_running=.FALSE.
154	locat=normal
155	mainprog=""
156	makefile=""
157	max_par_io_str=""
158	mc=$0
159	while [[ $(echo $mc \| grep -c "/") != 0 ]]
160	do
161	mc=`echo $mc \| cut -f2- -d"/"`
162	done
163	module_calls=""
164	mrun_script_name=$mc
165	netcdf_inc=""
166	netcdf_lib=""
167	netcdf_support=false
168	node_usage=default
169	numprocs=""
170	numprocs_atmos=0
171	numprocs_ocean=0
172	OOPT=""
173	openmp=false
174	output_list=""
175	package_list=""
176	punkte="..........................................................."
177	queue=none
178	read_from_config=""
179	restart_run=false
180	if [[ `hostname` = rte10 ]]
181	then
182	return_addres=133.5.185.60
183	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
184	elif [[ `hostname` = climate0 ]]
185	then
186	return_addres=165.132.26.68
187	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
188	elif [[ `hostname` = urban00 ]]
189	then
190	return_addres=147.46.30.151
191	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
192	else
193	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
194	fi
195	return_password=""
196	return_username=$LOGNAME
197	remotecall=false
198	remote_username=""
199	run_coupled_model=false
200	run_mode=""
201	scirocco=false
202	store_on_archive_system=false
203	striche=" ----------------------------------------------------------------------------"
204	silent=false
205	source_list=""
206	source_path=SOURCE
207	tasks_per_node=""
208	threads_per_task=1
209	tmpcreate=false
210	tmp_data_catalog=""
211	transfer_problems=false
212	usern=$LOGNAME
213	use_openmp=false
214	version="MRUN 2.0 Rev$Rev: 1191 $"
215	working_directory=`pwd`
216	TOPT=""
217	XOPT=""
218	zeit=$( date \| cut -c 12-19 )
219
220	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 stagein_anz=0 stageout_anz=0
221	typeset -x -i memory=0 # has to be exported here, otherwise an unknown side
222	# effect may cause data loss when getopts is reading the
223	# script-option arguments
224	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek last_char_int maxcycle minuten nodes pes sekunden tp1
225
226
227
228
229	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
230	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
231
232	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
233	# EXPORTIERT WERDEN
234	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
235	export group_number input_list numprocs output_list queue run_mode
236
237
238
239	# FEHLERBEHANDLUNG
240	# BEI EXIT:
241	trap 'rm -rf $working_directory/tmp_mrun
242	if [[ $locat != localhost ]]
243	then
244	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
245	# then
246	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
247	#MRUN-calls on $localhost
248	#
249	#date and time user localhost remotehost termination mrun-command
250	#--------------------------------------------------------------------------------------------------------------------
251	#%STATEND%
252	# chmod 666 ${mrun_path}/statistik/mrun_statistik
253	# fi
254	#
255	# # EINTRAG IN DIE STATISTIK-DATEI
256	# string1=`date` #-L35
257	# string2=$usern #-L12
258	# string3=$localhost_realname #-L12
259	# string4=$host #-L12
260	# string5=$locat #-L12
261	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
262	# then
263	# if [[ $do_batch = true ]]
264	# then
265	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
266	# else
267	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
268	# fi
269	# fi
270	echo " " > /dev/null
271	fi
272
273	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
274	then
275
276	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
277	(( i = 0 ))
278	while (( i < iec ))
279	do
280	(( i = i + 1 ))
281	printf "\n *** Execution of ERROR-command:\n"
282	printf " >>> ${err_command[$i]}\n"
283	eval ${err_command[$i]}
284	done
285	if [[ -n $interpreted_config_file ]]
286	then
287	rm -rf $interpreted_config_file
288	fi
289	if [[ -n .mrun_environment ]]
290	then
291	rm -rf .mrun_environment
292	fi
293	if [[ $tmpcreate = true ]]
294	then
295	printf "\n *** Contents of \"$TEMPDIR\":\n"
296	ls -al; cd
297	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
298	fi
299	if [[ "$dvrserver_id" != "" ]]
300	then
301	echo "+++ killing dvrserver_id=$dvrserver_id"
302	kill $dvrserver_id
303	fi
304	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
305	then
306	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
307	fi
308	printf "\n\n+++ MRUN killed \n\n"
309	elif [[ $locat != control_c ]]
310	then
311	printf "\n\n --> all actions finished\n\n"
312	printf " Bye, bye $usern !!\n\n"
313	fi' exit
314
315
316	# BEI TERMINAL-BREAK:
317	trap 'rm -rf $working_directory/tmp_mrun
318	rm -rf $working_directory/tmp_check_namelist_files
319	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
320	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
321	then
322	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
323	fi
324	if [[ "$dvrserver_id" != "" ]]
325	then
326	echo "+++ killing dvrserver_id=$dvrserver_id"
327	kill $dvrserver_id
328	fi
329	printf "\n+++ MRUN killed by \"^C\" \n\n"
330	locat=control_c
331	exit
332	' 2
333
334
335	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
336	# BEEN SET
337	if [[ "$PALM_BIN" = "" ]]
338	then
339	printf "\n +++ environment variable PALM_BIN has not been set"
340	printf "\n please set it to the directory where the PALM scripts are located"
341	locat=palm_bin; exit
342	fi
343	export PATH=$PALM_BIN:$PATH
344
345
346
347	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
348	# FUER FOLGEJOBS BENOETIGT WIRD
349	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vw:xX:yY:zZ option
350	do
351	case $option in
352	(a) afname=$OPTARG;;
353	(A) store_on_archive_system=true; mc="$mc -A";;
354	(b) do_batch=true; mc="$mc -b";;
355	(B) delete_temporary_catalog=false; mc="$mc -B";;
356	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
357	(C) restart_run=true; mc="$mc -C";;
358	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
359	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
360	(F) job_on_file="-D"; mc="$mc -F";;
361	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
362	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
363	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
364	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
365	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
366	(I) ignore_archive_error=true; mc="$mc -I";;
367	(k) keep_data_from_previous_run=true; mc="$mc -k";;
368	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
369	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
370	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
371	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
372	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
373	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
374	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
375	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
376	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
377	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
378	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
379	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
380	(S) read_from_config=false; mc="$mc -S";;
381	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
382	(T) mrun_tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
383	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
384	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
385	(v) silent=true; mc="$mc -v";;
386	(w) max_par_io_str=$OPTARG; mc="$mc -w$OPTARG";;
387	(x) do_trace=true;set -x; mc="$mc -x";;
388	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
389	(y) ocean_file_appendix=true; mc="$mc -y";;
390	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
391	(z) check_namelist_files=false; mc="$mc -z";;
392	(Z) combine_plot_fields=false; mc="$mc -Z";;
393	(\?) printf "\n +++ unknown option $OPTARG \n"
394	printf "\n --> type \"$0 ?\" for available options \n"
395	locat=parameter;exit;;
396	esac
397	done
398
399
400	# EVTL. POSITIONSPARAMETER EINLESEN
401	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
402	(( to_shift = $OPTIND - 1 ))
403	shift $to_shift
404
405	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
406	if [[ "$1" = "?" ]]
407	then
408	(printf "\n *** mrun can be called as follows:\n"
409	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. -z -Z <modus> \n"
410	printf "\n Description of available options:\n"
411	printf "\n Option Description Default-Value"
412	printf "\n -a base name of input files equiv. -d"
413	printf "\n -A archiving when using file-attribute fl"
414	printf "\n -b batch-job on local machine ---"
415	printf "\n -B do not delete temporary directory at end ---"
416	printf "\n -c configuration file .mrun.config"
417	printf "\n -d base name of files attached to program test"
418	printf "\n -D preprocessor(cpp)-directives \"\" "
419	printf "\n -F create remote job file only ---"
420	printf "\n -h execution host $localhost_realname"
421	printf "\n -i INPUT control list \"\" "
422	printf "\n -I archiving errors of previous batch-jobs"
423	printf "\n will be ignored"
424	printf "\n -k keep data from previous run"
425	printf "\n -K additional conditions for controling"
426	printf "\n usage of conditional code and"
427	printf "\n env-variables in configuration file \"\" "
428	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
429	printf "\n -M Makefile name Makefile"
430	printf "\n -n node usage (shared/not_shared) depending on -h"
431	printf "\n -o OUTPUT control list \"\" "
432	printf "\n -O use OpenMP ---"
433	printf "\n -p software package list \"\" "
434	printf "\n -q queue \"$queue\" "
435	printf "\n -r run control list (combines -i -o) \"\" "
436	printf "\n -s filenames of routines to be compiled \"\" "
437	printf "\n must end with .f, .f90, .F, or .c !"
438	printf "\n use \"..\" for more than one file and wildcards"
439	printf "\n -s LM compiles all locally modified files"
440	printf "\n -S config file interpreted by shellscript ---"
441	printf "\n -t allowed cpu-time in seconds (batch) 0"
442	printf "\n -T tasks per node depending on -h"
443	printf "\n -u username on remote machine \"\" "
444	printf "\n -v no prompt for confirmation ---"
445	printf "\n -w maximum parallel io streams as given by -X"
446	printf "\n -x tracing of mrun for debug purposes ---"
447	printf "\n -X # of processors (on parallel machines) 1"
448	printf "\n -y add appendix \"_O\" to all local output"
449	printf "\n files (ocean precursor runs followed by"
450	printf "\n coupled atmosphere-ocean runs) ---"
451	printf "\n -Y run coupled model, \"#1 #2\" with"
452	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
453	printf "\n -z disable a priori parameter file check ---"
454	printf "\n -Z skip combine_plot_fields at the end of "
455	printf "\n the simulation ---"
456	printf "\n "
457	printf "\n Possible values of positional parameter <modus>:"
458	printf "\n \"?\" - this outline \n\n") \| more
459	exit
460	elif [[ "$1" != "" ]]
461	then
462	printf "\n +++ positional parameter $1 unknown \n"
463	locat=parameter; exit
464	fi
465
466
467
468	# KURZE STARTMELDUNG
469	printf "\n*** $version "
470	printf "\n will be executed. Please wait ..."
471
472
473
474	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
475	if [[ ! -f $config_file ]]
476	then
477	printf "\n\n +++ configuration file: "
478	printf "\n $config_file"
479	printf "\n does not exist"
480	locat=connect; exit
481	fi
482
483
484	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
485	line=""
486	grep "%host_identifier" $config_file > tmp_mrun
487	while read line
488	do
489	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
490	then
491	HOSTNAME=`echo $line \| cut -d" " -s -f2`
492	host_identifier=`echo $line \| cut -d" " -s -f3`
493	if [[ $localhost_realname = $HOSTNAME ]]
494	then
495	localhost=$host_identifier
496	break
497	fi
498	fi
499	done < tmp_mrun
500
501	if [[ "$localhost" = "" ]]
502	then
503	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
504	printf "\n for local host \"$localhost_realname\"."
505	printf "\n Please add line"
506	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
507	printf "\n to the configuration file."
508	locat=localhost; exit
509	fi
510
511
512	# HOSTSPEZIFISCHE VARIABLEN SETZEN
513	case $localhost_realname in
514	(r1\|r2\|h01\|b01) archive_system=tivoli;;
515	(cs*) archive_system=ut;;
516	(fimm.bccs.uib.no) fimm=true;;
517	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
518	(scirocco) scirocco=true;;
519	esac
520
521
522
523	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
524	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
525	[[ "$afname" = "" ]] && afname=$fname
526
527
528	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
529	if [[ "$run_mode" != "" ]]
530	then
531	input_list="$input_list $run_mode"
532	output_list="$output_list $run_mode"
533	fi
534
535
536	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
537	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
538	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
539	# STARTET)
540	if [[ "$fromhost" = "" ]]
541	then
542	fromhost=$localhost
543	fi
544
545
546	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
547	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
548	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
549	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
550	if [[ -n $host && "$host" != $localhost ]]
551	then
552	do_batch=true
553	do_remote=true
554	case $host in
555	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|nech\|necriam\|lcflow\|lckyoto\|lcsgib\|lcsgih\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
556	(*) printf "\n"
557	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
558	printf "\n is not available"
559	locat=nqs; (( iec = 0 )); exit;;
560	esac
561	else
562	host=$localhost
563	fi
564
565
566	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
567	if [[ -n $additional_conditions ]]
568	then
569	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
570	cond1=`echo $additional_conditions \| cut -d" " -f1`
571	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
572	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
573	if [[ -n $dummy ]]
574	then
575	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
576	locat=options; exit
577	fi
578	block=_$cond1
579	[[ -n $cond2 ]] && block=${block}_$cond2
580	fi
581
582
583	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
584	if [[ $run_coupled_model = true ]]
585	then
586
587	if [[ -n $coupled_dist ]]
588	then
589
590	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
591	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
592
593	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
594	then
595
596	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
597	printf "\n PEs (total) : $numprocs"
598	printf "\n PEs (atmosphere): $numprocs_atmos"
599	printf "\n PEs (ocean) : $numprocs_ocean"
600	locat=coupling; exit
601
602	fi
603
604	else
605
606	(( numprocs_ocean = $numprocs / 2 ))
607	(( numprocs_atmos = $numprocs / 2 ))
608
609	fi
610	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
611
612	# GET coupled_mode FROM THE CONFIG FILE
613	line=""
614	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
615	while read line
616	do
617	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && $(echo $line \| cut -d" " -s -f4) = $cond1 && $(echo $line \| cut -d" " -s -f4) = $cond2 ]]
618	then
619	coupled_mode="mpi2"
620	fi
621	done < tmp_mrun
622
623	fi
624
625
626	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
627	# ARCHIVIERUNG FEHLGESCHLAGEN IST
628	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
629	then
630	if [[ $ignore_archive_error = false ]]
631	then
632	printf "\n +++ data archiving of previous run failed"
633	printf "\n see directory \~/job_queue on remote machine"
634	locat=archive; exit
635	else
636	printf "\n +++ warning: data archiving in a previous run failed"
637	printf "\n MRUN continues, trying to get backup copy"
638	fi
639	fi
640
641
642	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
643	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
644	mrun_memory=$memory
645	mrun_group_number=$group_number
646	mrun_cpumax=$cpumax
647	mrun_numprocs=$numprocs
648
649
650	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
651	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
652	if [[ "$read_from_config" = false ]]
653	then
654
655	[[ $silent = false ]] && printf "\n Reading the configuration file... "
656	while read zeile
657	do
658	[[ $silent = false ]] && printf "."
659
660
661	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
662	# ERSETZEN
663	eval zeile=\"$zeile\"
664
665
666	# INTERPRETATION DER ZEILE
667	if [[ "$(echo $zeile)" = "" ]]
668	then
669	# LEERZEILE, KEINE AKTION
670	continue
671
672	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
673	then
674
675	# ZEILE IST KOMMENTARZEILE
676	true
677
678	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
679	then
680
681	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
682	zeile=$(echo $zeile \| cut -c2-)
683	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
684	var=`echo $zeile \| cut -d" " -f1`
685	value=`echo $zeile \| cut -d" " -s -f2`
686	for_host=`echo $zeile \| cut -d" " -s -f3`
687	for_cond1=`echo $zeile \| cut -d" " -s -f4`
688	for_cond2=`echo $zeile \| cut -d" " -s -f5`
689
690	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
691	then
692
693	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
694	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
695	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
696
697
698	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
699	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
700	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
701	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
702	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
703	# KONFIGURATIONSDATEI
704	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
705	then
706	eval $var=\$value
707
708	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
709	if [[ $do_trace = true ]]
710	then
711	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
712	fi
713	fi
714
715	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
716	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
717	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
718	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
719	if [[ $var = host ]]
720	then
721	if [[ -n $host && "$host" != $localhost ]]
722	then
723	do_batch=true
724	do_remote=true
725	case $host in
726	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lcflow\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
727	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
728	printf "\n is not available"
729	locat=nqs; exit;;
730	esac
731	else
732	host=$localhost
733	fi
734	fi
735
736	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
737	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
738	# DEN PROGRAMMEN BENOETIGT WERDEN
739	export $var
740	fi
741
742
743
744
745	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
746	then
747
748	# ZEILE DEFINIERT ERROR-KOMMANDO
749	(( iec = iec + 1 ))
750	zeile=$(echo $zeile \| cut -c4-)
751	err_command[$iec]="$zeile"
752
753	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
754	then
755
756	# ZEILE DEFINIERT INPUT-KOMMANDO
757	(( iic = iic + 1 ))
758	zeile=$(echo $zeile \| cut -c4-)
759	in_command[$iic]="$zeile"
760
761	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
762	then
763
764	# ZEILE DEFINIERT OUTPUT-KOMMANDO
765	(( ioc = ioc + 1 ))
766	zeile=$(echo $zeile \| cut -c4-)
767	out_command[$ioc]="$zeile"
768
769	else
770
771	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
772	# s2a: in/out - Feld
773	# s2b: loc - Feld (optional)
774	# s2c: tr/ar - Feld (optional)
775	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
776	s1=`echo $zeile \| cut -d" " -f1`
777	s2=`echo $zeile \| cut -d" " -s -f2`
778	s2a=$(echo $s2 \| cut -d":" -f1)
779	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
780	then
781	s2b=""
782	s2c=""
783	else
784	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
785	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
786	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
787	fi
788	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
789	s3=`echo $zeile \| cut -d" " -f3`
790	s4=`echo $zeile \| cut -d" " -s -f4`
791	s5=`echo $zeile \| cut -d" " -s -f5`
792	s6=`echo $zeile \| cut -d" " -s -f6`
793
794
795	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
796	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
797	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
798	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
799	# HANDEN SEIN MUSS (D.H. s2b = loc)
800	IFSALT="$IFS"; IFS="$IFS:"
801	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
802	then
803	found=false
804	for actual in $input_list
805	do
806	for formal in $s3
807	do
808	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
809	done
810	done
811	if [[ $found = true ]]
812	then
813	(( iin = iin + 1 ))
814	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
815	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
816	extin[$iin]=$s6
817	fi
818	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
819	then
820	found=false
821	for actual in $output_list
822	do
823	for formal in $s3
824	do
825	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
826	done
827	done
828	if [[ $found = true ]]
829	then
830	(( iout = iout + 1 ))
831	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
832	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
833	fi
834	elif [[ "$s2a" != in && "$s2a" != out ]]
835	then
836	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
837	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
838	locat=connect; exit
839	fi
840	IFS="$IFSALT"
841	fi
842	done < $config_file
843
844	else
845
846
847	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
848	[[ $silent = false ]] && printf "..."
849	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
850	export interpreted_config_file=.icf.$RANDOM
851
852
853
854	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
855	# VERFUEGUNG STELLEN
856	cat > .mrun_environment << %%END%%
857	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
858	config_file = '$config_file', do_remote = '$do_remote',
859	do_trace = '$do_trace', host = '$host',
860	input_list = '$input_list', icf = '$interpreted_config_file',
861	localhost = '$localhost', output_list = '$output_list' /
862
863	%%END%%
864
865	if [[ $localhost_realname = "sx-fep" ]]
866	then
867	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
868	else
869
870	if [[ "$host" != $localhost ]]
871	then
872
873	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
874	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
875	if [[ $? != 0 ]]
876	then
877	printf "\n\n +++ no interpret_config found"
878	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
879	locat=interpret_config; exit
880	fi
881	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
882	$interpret_config_executable
883
884	else
885
886	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
887	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
888	then
889	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
890	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
891	locat=interpret_config; exit
892	else
893	interpret_config${block}.x
894	fi
895
896	fi
897	fi
898	rm .mrun_environment
899
900
901	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
902	chmod u+x $interpreted_config_file
903	export PATH=$PATH:.
904	. $interpreted_config_file
905	rm $interpreted_config_file
906
907	fi
908
909
910	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
911	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
912	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
913	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
914	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
915	[[ "$max_par_io_str" != "" ]] && maximum_parallel_io_streams=$max_par_io_str
916	[[ "$mrun_tasks_per_node" != "" ]] && tasks_per_node=$mrun_tasks_per_node
917
918
919	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
920	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
921	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
922	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
923	if [[ "$SOURCES_COMPLETE" = "" ]]
924	then
925
926	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
927	# VEREINBART WURDE
928	source_path=""
929	line=""
930	grep "%source_path" $config_file > tmp_mrun
931	while read line
932	do
933	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
934	then
935	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
936	then
937	global_source_path=`echo $line \| cut -d" " -f2`
938	fi
939	fi
940	done < tmp_mrun
941
942	line=""
943	found=false
944	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
945	while read line
946	do
947	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
948	then
949	if [[ $found = true ]]
950	then
951	printf "\n\n +++ more than one source path found in configuration file"
952	printf "\n for local host \"$localhost\" "
953	locat=source_path; exit
954	fi
955	source_path=`echo $line \| cut -d" " -f2`
956	found=true
957	fi
958	done < tmp_mrun
959	rm tmp_mrun
960
961	if [[ "$source_path" = "" ]]
962	then
963	if [[ "$global_source_path" != "" ]]
964	then
965	source_path=$global_source_path
966	else
967	printf "\n\n +++ no source path found in configuration file"
968	printf "\n for local host \"$localhost\" "
969	locat=source_path; exit
970	fi
971	fi
972	eval source_path=$source_path
973
974	if [[ ! -d $source_path ]]
975	then
976	printf "\n\n +++ source path \"$source_path\" on local host"
977	printf "\n \"$localhost\" does not exist"
978	locat=source_path; exit
979	fi
980
981	fi
982
983
984	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
985	# DURCH OPTION -G MITGETEILT)
986	if [[ "$global_revision" = "" && $host != "ibmkisti" ]]
987	then
988	global_revision=`svnversion $source_path 2>/dev/null`
989	global_revision="Rev: $global_revision"
990	fi
991
992
993	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
994	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
995	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
996	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
997	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
998	if [[ -n $host && "$host" != $localhost ]]
999	then
1000	do_batch=true
1001	do_remote=true
1002	case $host in
1003	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lcflow\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
1004	(*) printf "\n"
1005	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
1006	printf "\n is not available"
1007	locat=nqs; (( iec = 0 )); exit;;
1008	esac
1009	else
1010	host=$localhost
1011	fi
1012
1013
1014	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
1015	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1016	then
1017
1018	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
1019	if [[ ! -n $numprocs ]]
1020	then
1021	printf "\n"
1022	printf "\n +++ option \"-K parallel\" requires additional specification"
1023	printf "\n of the number of processors to be used by"
1024	printf "\n mrun-option \"-X\" or by environment-variable"
1025	printf "\n \"numprocs\" in the configuration file"
1026	locat=numprocs; (( iec = 0 )); exit
1027	fi
1028
1029	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
1030	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
1031	# GESAMTPROZESSORANZAHL IST
1032	if [[ "$tasks_per_node" = "" && $host != lcflow && $host != lcxt5m ]]
1033	then
1034	printf "\n"
1035	printf "\n +++ option \"-T\" (tasks per node) is missing"
1036	printf "\n set -T option or define tasks_per_node in the config file"
1037	locat=tasks_per_node; (( iec = 0 )); exit
1038	fi
1039	if [[ $host != lcflow && $host != lcxt5m ]]
1040	then
1041	(( ival = $tasks_per_node ))
1042	(( pes = numprocs ))
1043	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1044	# then
1045	# (( pes = pes - 1 ))
1046	# fi
1047	(( ii = pes / ival ))
1048	if (( pes - ii * ival > 0 ))
1049	then
1050	printf "\n"
1051	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1052	printf "\n divisor of the total number of processors (option \"-X\")"
1053	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1054	locat=tasks_per_node; (( iec = 0 )); exit
1055	fi
1056	fi
1057
1058
1059	# IBMY HAT NUR EINEN KNOTEN
1060	if [[ $host = ibmy ]]
1061	then
1062	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1063	then
1064	printf "\n"
1065	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1066	printf "\n total number of processors (option \"-X\")"
1067	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1068	locat=tasks_per_node; (( iec = 0 )); exit
1069	fi
1070	fi
1071
1072
1073	# SETTINGS FOR SUBJOB-COMMAND
1074	OOPT="-O $threads_per_task"
1075
1076	# GESAMTZAHL DER KNOTEN BESTIMMEN
1077	if [[ "$tasks_per_node" != "" ]]
1078	then
1079	TOPT="-T $tasks_per_node"
1080	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1081	fi
1082
1083	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1084	# SETZEN
1085	if [[ $node_usage = default ]]
1086	then
1087	if [[ $host = ibms ]]
1088	then
1089	node_usage=shared
1090	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1091	then
1092	node_usage=singlejob
1093	else
1094	node_usage=not_shared
1095	fi
1096	fi
1097
1098	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
1099	then
1100	printf "\n"
1101	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1102	printf "\n \"shared\" or \"not_shared\""
1103	locat=tasks_per_node; (( iec = 0 )); exit
1104	fi
1105
1106	fi
1107
1108	# PRUEFEN, OB HOSTFILE EXISTIERT
1109	if [[ -n $hostfile ]]
1110	then
1111	if [[ ! -f $hostfile ]]
1112	then
1113	printf "\n"
1114	printf "\n +++ hostfile \"$hostfile\" does not exist"
1115	locat=hostfile; exit
1116	fi
1117	fi
1118
1119	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1120	if [[ $host = ibmy && $do_remote = false ]]
1121	then
1122	if [[ ! -f $HOME/.rhosts ]]
1123	then
1124	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1125	printf "\n\n *** file:"
1126	printf "\n $HOME/.rhosts"
1127	printf "\n was created\n"
1128	fi
1129	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1130	then
1131	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1132	printf "\n\n *** file:"
1133	printf "\n $HOME/.rhosts"
1134	printf "\n was extended by the name of the current host\n"
1135	fi
1136	fi
1137
1138
1139	# Set default value for the maximum number of parallel io streams
1140	if [[ "$maximum_parallel_io_streams" = "" ]]
1141	then
1142	maximum_parallel_io_streams=$numprocs
1143	fi
1144
1145
1146	# Set port number option for calls of ssh/scp, subjob and batch_scp scripts
1147	if [[ "$scp_port" != "" ]]
1148	then
1149	PORTOPT="-P $scp_port"
1150	SSH_PORTOPT="-p $scp_port"
1151	fi
1152
1153
1154	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1155	if [[ $queue = none ]]
1156	then
1157	case $host in
1158	(ibmh) queue=cluster;;
1159	(ibmkisti) queue=class.32plus;;
1160	(ibmy) queue=parallel;;
1161	(lckiaps) queue=normal;;
1162	(lckyoto) queue=ph;;
1163	(lckyuh) queue=fx-single;;
1164	(lckyut) queue=cx-single;;
1165	(lcsgib) queue=testq;;
1166	(lcsgih) queue=testq;;
1167	(lctit) queue=S;;
1168	(nech) queue=none;;
1169	(necriam) queue=SP;;
1170	(unics) queue=unics;;
1171	esac
1172	fi
1173
1174
1175	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1176	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1177	# ERMITTELN
1178	(( i = 0 ))
1179	while (( i < iin ))
1180	do
1181	(( i = i + 1 ))
1182	(( maxcycle = 0 ))
1183
1184	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1185	if [[ "${actionin[$i]}" = di ]]
1186	then
1187	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1188	# REM-MASCHINE AUSWERTEN
1189	eval filename=${pathin[$i]}/${endin[$i]}
1190	else
1191	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1192	# REM-MASCHINE AUSWERTEN
1193	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1194	fi
1195	eval pathname=${pathin[$i]}
1196
1197	# SAVE INPUT FILE NAME FOR PARAMETER FILE CHECK
1198	if [[ ("${transin[$i]}" = job) && (-f $filename) ]]
1199	then
1200	filename_input=$filename
1201	fi
1202
1203	# PRUEFEN AUF VORHANDENSEIN
1204	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1205	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1206	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1207	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1208	then
1209	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1210	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1211	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1212	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1213	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1214	if [[ "${transin[$i]}" != "locopt" ]]
1215	then
1216	printf "\n\n +++ INPUT-file: "
1217	if [[ "${extin[$i]}" = "" ]]
1218	then
1219	printf "\n $filename"
1220	else
1221	printf "\n $filename.${extin[$i]}"
1222	fi
1223	printf "\n does not exist\n"
1224	locat=input; exit
1225	else
1226	transin[$i]="unavailable"
1227	fi
1228	else
1229
1230	# ZYKLUSNUMMER FESTSTELLEN
1231	ls -1 -d $filename > filelist 2>/dev/null
1232	ls -1 -d $filename.* >> filelist 2>/dev/null
1233	while read zeile
1234	do
1235	cycle=$(echo $zeile \| cut -f2 -d".")
1236	if [[ "$cycle" = "$zeile" ]]
1237	then
1238	(( icycle = 0 ))
1239	elif [[ "$cycle" = "${extin[$i]}" ]]
1240	then
1241	(( icycle = 0 ))
1242	else
1243	(( icycle = $cycle ))
1244	fi
1245	if (( icycle > maxcycle ))
1246	then
1247	(( maxcycle = icycle ))
1248	file_to_be_used=$zeile
1249	fi
1250	done <filelist
1251	rm filelist
1252
1253	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1254	if (( maxcycle > 0 ))
1255	then
1256	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1257	then
1258	filename=${filename}.$maxcycle.${extin[$i]}
1259	else
1260	filename=${filename}.$maxcycle
1261	fi
1262	else
1263	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1264	then
1265	filename=${filename}.${extin[$i]}
1266	fi
1267	fi
1268
1269	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1270	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1271	absnamein[$i]=$filename
1272	if (( maxcycle > 0 ))
1273	then
1274	if [[ "${actionin[$i]}" = di ]]
1275	then
1276	frelin[$i]=${endin[$i]}.$maxcycle
1277	else
1278	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1279	fi
1280	else
1281	if [[ "${actionin[$i]}" = di ]]
1282	then
1283	frelin[$i]=${endin[$i]}
1284	else
1285	frelin[$i]=${afname}${endin[$i]}
1286	fi
1287	fi
1288
1289	fi
1290	done
1291
1292	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1293	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1294	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1295	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1296	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1297	(( i = 0 ))
1298	while (( i < iout ))
1299	do
1300	(( i = i + 1 ))
1301	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1302	then
1303	if [[ "${actionout[$i]}" = tr ]]
1304	then
1305	actionout[$i]=""
1306	elif [[ "${actionout[$i]}" = trpe ]]
1307	then
1308	actionout[$i]=pe
1309	elif [[ "${actionout[$i]}" = tra ]]
1310	then
1311	actionout[$i]=a
1312	fi
1313	(( maxcycle = 0 ))
1314	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1315	eval catalogname=${pathout[$i]}
1316	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1317	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1318	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1319	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1320	then
1321
1322	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1323	if cat /dev/null > $filename
1324	then
1325	rm $filename
1326	else
1327
1328	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1329	if [[ ! -d $catalogname ]]
1330	then
1331	if mkdir -p $catalogname
1332	then
1333	printf "\n\n *** directory:"
1334	printf "\n $catalogname"
1335	printf "\n was created\n"
1336	else
1337	printf "\n\n +++ OUTPUT-file:"
1338	printf "\n $filename"
1339	printf "\n cannot be created, because directory does not exist"
1340	printf "\n and cannot be created either"
1341	printf "\n"
1342	locat=output ; exit
1343	fi 2>/dev/null
1344	else
1345	printf "\n\n +++ OUTPUT-file:"
1346	printf "\n $filename"
1347	printf "\n cannot be created, although directory exists"
1348	printf "\n"
1349	locat=output ; exit
1350	fi
1351	fi 2>/dev/null
1352	else
1353
1354	# ZYKLUSNUMMER FESTSTELLEN
1355	ls -1 -d $filename > filelist 2>/dev/null
1356	ls -1 -d $filename.* >> filelist 2>/dev/null
1357	while read zeile
1358	do
1359	cycle=$(echo $zeile \| cut -f2 -d".")
1360	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1361	then
1362	(( icycle = 1 ))
1363	else
1364	(( icycle = $cycle + 1 ))
1365	fi
1366	if (( icycle > maxcycle ))
1367	then
1368	(( maxcycle = icycle ))
1369	fi
1370	done <filelist
1371	rm filelist
1372	fi
1373
1374	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1375	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1376	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1377	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1378	if [[ "${actionout[$i]}" != a ]]
1379	then
1380	if (( maxcycle > 0 ))
1381	then
1382	filename=${filename}.$maxcycle
1383	if cat /dev/null > $filename
1384	then
1385	rm $filename
1386	else
1387	printf "\n +++ OUTPUT-file:"
1388	printf "\n $filename"
1389	printf "\n cannot be created"
1390	locat=output ; exit
1391	fi
1392	fi
1393	else
1394	(( maxcycle = maxcycle - 1 ))
1395	if (( maxcycle > 0 ))
1396	then
1397	filename=${filename}.$maxcycle
1398	fi
1399	fi
1400
1401	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1402	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1403	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1404	pathout[$i]=$filename
1405	if (( maxcycle > 0 ))
1406	then
1407	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1408	else
1409	frelout[$i]=${fname}${endout[$i]}
1410	fi
1411
1412	fi
1413	done
1414
1415
1416	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1417	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1418	then
1419	if [[ "$dvr_inc" = "" ]]
1420	then
1421	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1422	printf "\n This is required for the dvrp_graphics package.\n"
1423	locat=dvr; exit
1424	fi
1425	if [[ "$dvr_lib" = "" ]]
1426	then
1427	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1428	printf "\n This is required for the dvrp_graphics package.\n"
1429	locat=dvr; exit
1430	fi
1431	fi
1432
1433
1434	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1435	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1436	# UEBERSETZT ZU WERDEN)
1437	if [[ "$mainprog" = "" && "$executable" = "" ]]
1438	then
1439	printf "\n +++ neither main program nor executable defined"
1440	locat=source; exit
1441	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1442	then
1443	printf "\n +++ main program as well as executable defined"
1444	locat=source; exit
1445	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1446	then
1447	do_compile=false
1448	fi
1449
1450
1451	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1452	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1453	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1454	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1455	then
1456	rm -rf SOURCES_FOR_RUN_$fname
1457	mkdir SOURCES_FOR_RUN_$fname
1458	fi
1459
1460
1461	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1462	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1463	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1464	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1465	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1466	then
1467
1468	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1469
1470	if [[ "$source_list" = LOCALLY_MODIFIED ]]
1471	then
1472
1473	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1474	source_list=""
1475	cd $source_path
1476
1477
1478	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1479	if [[ ! -d .svn ]]
1480	then
1481	printf "\n\n +++ source directory"
1482	printf "\n \"$source_path\" "
1483	printf "\n is not under control of \"subversion\"."
1484	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1485	fi
1486
1487
1488	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1489	Filenames=""
1490	svn status > tmp_mrun
1491	while read line
1492	do
1493	firstc=`echo $line \| cut -c1`
1494	if [[ $firstc = M \|\| $firstc = "?" ]]
1495	then
1496	Name=`echo "$line" \| cut -c8-`
1497	extension=`echo $Name \| cut -d. -f2`
1498	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1499	then
1500	Filenames="$Filenames "$Name
1501	fi
1502	fi
1503	done < tmp_mrun
1504
1505
1506	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1507	for dateiname in $Filenames
1508	do
1509	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1510	source_list=$source_list"$dateiname "
1511	done
1512
1513	cd - > /dev/null
1514
1515
1516	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1517	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1518	# VORHANDEN
1519	elif [[ "$source_list" != "" && $restart_run != true ]]
1520	then
1521
1522	cd $source_path
1523
1524	for filename in $source_list
1525	do
1526
1527	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1528	if [[ $(echo $filename \| grep -c "/") != 0 ]]
1529	then
1530	printf "\n +++ source code file: $filename"
1531	printf "\n must not contain (\"/\") "
1532	locat=source; exit
1533	fi
1534
1535	if [[ ! -f $filename ]]
1536	then
1537	printf "\n +++ source code file: $filename"
1538	printf "\n does not exist"
1539	locat=source; exit
1540	else
1541	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1542	fi
1543
1544	done
1545
1546	cd - > /dev/null
1547
1548	fi
1549
1550
1551	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1552	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1553	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1554	if [[ $restart_run != true ]]
1555	then
1556
1557	if [[ ! -f "$source_path/$mainprog" ]]
1558	then
1559	printf "\n\n +++ main program: $mainprog"
1560	printf "\n does not exist in source directory"
1561	printf "\n \"$source_path\"\n"
1562	locat=source; exit
1563	else
1564	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1565	then
1566	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1567	source_list=${mainprog}" $source_list"
1568	fi
1569	fi
1570	fi
1571
1572
1573	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1574	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1575	if [[ "$restart_run" != true ]]
1576	then
1577	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1578	if [[ ! -f $makefile ]]
1579	then
1580	printf "\n +++ file \"$makefile\" does not exist"
1581	locat=make; exit
1582	else
1583	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1584	fi
1585	fi
1586
1587
1588	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1589	if [[ $restart_run != true && "$add_source_path" != "" ]]
1590	then
1591
1592	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1593	if [[ ! -d $add_source_path ]]
1594	then
1595	printf "\n\n +++ WARNING: additional source code directory"
1596	printf "\n \"$add_source_path\" "
1597	printf "\n does not exist or is not a directory."
1598	printf "\n No source code will be used from this directory!\n"
1599	add_source_path=""
1600	if [[ $silent == false ]]
1601	then
1602	sleep 3
1603	fi
1604	else
1605
1606	cd $add_source_path
1607	found=false
1608
1609	Names=$(ls -1 *.f90 2>&1)
1610	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1611	Names=$(ls -1 *.F90 2>&1)
1612	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1613	Names=$(ls -1 *.F 2>&1)
1614	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1615	Names=$(ls -1 *.f 2>&1)
1616	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1617	Names=$(ls -1 *.c 2>&1)
1618	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1619
1620	cd - > /dev/null
1621	cd SOURCES_FOR_RUN_$fname
1622
1623	# COPY MAKEFILE IF EXISTING
1624	if [[ -f $add_source_path/Makefile ]]
1625	then
1626	printf "\n\n *** user Makefile from directory"
1627	printf "\n \"$add_source_path\" is used \n"
1628	if [[ $silent == false ]]
1629	then
1630	sleep 1
1631	fi
1632	cp $add_source_path/Makefile .
1633	fi
1634
1635	for dateiname in $AddFilenames
1636	do
1637	if [[ -f $dateiname ]]
1638	then
1639	printf "\n +++ source code file \"$dateiname\" found in additional"
1640	printf "\n source code directory \"$add_source_path\" "
1641	printf "\n but was also given with option \"-s\" which means that it should be taken"
1642	printf "\n from directory \"$source_path\"."
1643	locat=source; exit
1644	fi
1645
1646	cp $add_source_path/$dateiname .
1647	source_list="$source_list $dateiname"
1648
1649	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1650	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1651	then
1652	printf "\n\n +++ user file \"$dateiname\" "
1653	printf "\n is not listed in Makefile \n"
1654	locat=source; exit
1655	else
1656
1657	# Default User-Interface von der Liste entfernen, falls Datei
1658	# ein User-Interface enthaelt
1659	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1660	# then
1661	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1662	# then
1663	# rm -rf user_interface.f90
1664	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1665	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1666	# printf "\n since a user-interface is found in file"
1667	# printf "\n \"$add_source_path/$dateiname\" \n"
1668	# sleep 3
1669	# else
1670	if [[ $found = false ]]
1671	then
1672	found=true
1673	printf "\n\n *** following user file(s) added to the"
1674	printf " files to be translated:\n "
1675	fi
1676	printf "$dateiname "
1677	if [[ $silent == false ]]
1678	then
1679	sleep 0.5
1680	fi
1681
1682	fi
1683	done
1684	[[ $found = true ]] && printf "\n"
1685	cd - > /dev/null
1686	fi
1687	fi
1688
1689
1690	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1691	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1692	if [[ $restart_run != true && -n $package_list ]]
1693	then
1694
1695	cd $source_path
1696
1697	for package in $package_list
1698	do
1699
1700	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1701
1702	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1703	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1704	# LIEFERT
1705	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1706
1707
1708	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1709	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1710	for source_list_name in $package_source_list
1711	do
1712	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1713	then
1714
1715	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1716	ending=`echo $source_list_name \| cut -f2 -d.`
1717	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1718	then
1719	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1720	source_list="$source_list $source_list_name"
1721	fi
1722	fi
1723	done
1724	done
1725
1726	cd - > /dev/null
1727	fi
1728
1729
1730	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1731	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1732	# if [[ "$restart_run" != true ]]
1733	# then
1734	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1735	# if [[ ! -f $makefile ]]
1736	# then
1737	# printf "\n +++ file \"$makefile\" does not exist"
1738	# locat=make; exit
1739	# else
1740	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1741	# fi
1742	# fi
1743
1744	fi # do_compile=true
1745
1746
1747	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1748	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1749	if [[ $do_compile = true ]]
1750	then
1751
1752	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1753	# ZUSAMMENSETZEN
1754	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1755	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1756	then
1757	cpp_options="${cpp_options},-D__ibm=__ibm"
1758	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1759	then
1760	cpp_options="$cpp_options -D__nec"
1761	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1762	then
1763	cpp_options="$cpp_options -D__lc"
1764	else
1765	cpp_options="$cpp_options -D__$localhost"
1766	fi
1767
1768	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1769	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1770	then
1771	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1772	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1773	else
1774	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1775	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1776	fi
1777
1778	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1779	if [[ -n $package_list ]]
1780	then
1781	for package in $package_list
1782	do
1783	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1784	then
1785	if [[ $package != "dvrp_graphics+1PE" ]]
1786	then
1787	cpp_options="${cpp_options},-D__$package=__$package"
1788	else
1789	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1790	export use_seperate_pe_for_dvrp_output=true
1791	fi
1792	else
1793	if [[ $package != "dvrp_graphics+1PE" ]]
1794	then
1795	cpp_options="$cpp_options -D__$package"
1796	else
1797	cpp_options="$cpp_options -D__dvrp_graphics"
1798	export use_seperate_pe_for_dvrp_output=true
1799	fi
1800	fi
1801	done
1802	fi
1803
1804	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1805	if [[ -n $cpp_opts ]]
1806	then
1807	for popts in $cpp_opts
1808	do
1809	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1810	then
1811	cpp_options="${cpp_options},-D__$popts=__$popts"
1812	else
1813	cpp_options="$cpp_options -D__$popts"
1814	fi
1815	done
1816	fi
1817
1818	else
1819
1820
1821	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1822	if [[ $do_remote = false ]]
1823	then
1824	if [[ ! -f $executable ]]
1825	then
1826	printf "\n +++ executable file: $executable"
1827	printf "\n does not exist"
1828	locat=executable; exit
1829	fi
1830	fi
1831	fi
1832
1833
1834	# JOBMODUS FESTSTELLEN
1835	if [[ "$ENVIRONMENT" = BATCH ]]
1836	then
1837	jobmo=BATCH
1838	else
1839	jobmo=INTERACTIVE
1840	fi
1841
1842
1843	# no interactive runs on lctit
1844	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
1845	then
1846	printf "\n +++ no interactive runs allowed on host \"$host\" "
1847	printf "\n please submit batch job using mrun option \"-b\" \n"
1848	locat=normal; exit
1849	fi
1850
1851
1852	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1853	# DURCH BENUTZER ANDERWEITIG VEREINBART
1854	if [[ "$compiler_name" = "" ]]
1855	then
1856
1857	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
1858	locat=compiler_name; exit
1859
1860	fi
1861
1862
1863	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
1864	[[ $localhost = necriam ]] && compiler_name=mpif90
1865
1866
1867
1868	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
1869	kennung=$RANDOM
1870	if [[ "$tmp_user_catalog" = "" ]]
1871	then
1872	if [[ $localhost = ibmh ]]
1873	then
1874	tmp_user_catalog=$SCRATCH
1875	elif [[ $localhost = nech ]]
1876	then
1877	tmp_user_catalog=$WRKSHR
1878	else
1879	tmp_user_catalog=/tmp
1880	fi
1881	fi
1882	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
1883
1884
1885	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
1886	# BESTIMMEN
1887	if [[ "$tmp_data_catalog" = "" ]]
1888	then
1889	if [[ $localhost = nech ]]
1890	then
1891	tmp_data_catalog=$WRKSHR/mrun_restart_data
1892	else
1893	tmp_data_catalog=/tmp/mrun_restart_data
1894	fi
1895	fi
1896
1897
1898	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
1899	# ERSETZEN
1900	if [[ $do_remote = false && $do_compile = true ]]
1901	then
1902	eval fopts=\"$fopts\"
1903	eval lopts=\"$lopts\"
1904	fi
1905
1906
1907
1908	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
1909	fopts="$fopts $netcdf_inc $dvr_inc"
1910	lopts="$lopts $netcdf_lib $dvr_lib"
1911	ROPTS="$ropts"
1912	# if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcflow \|\| $host = lcxe6 \|\| $host = lcxt5m \|\| $host = lck \|\| $host = lckiaps \|\| $host = lckordi \|\| $host = lcsb \|\| $host ) && -n $numprocs ]]
1913	# then
1914	XOPT="-X $numprocs"
1915	# fi
1916
1917
1918
1919	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
1920	# GRAMM BENOETIGT
1921	done=false
1922	while [[ $done = false ]]
1923	do
1924	cputime=$cpumax
1925	if (( $cputime == 0 ))
1926	then
1927	if [[ $do_batch = true ]]
1928	then
1929	printf "\n +++ cpu-time is undefined"
1930	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
1931	printf "\n >>> "
1932	read cputime 1>/dev/null 2>&1
1933	else
1934	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
1935	fi
1936	else
1937	done=true
1938	fi
1939	cpumax=$cputime
1940	done
1941
1942	(( minuten = cputime / 60 ))
1943	(( sekunden = cputime - minuten * 60 ))
1944
1945
1946	# PRUEFEN DER KERNSPEICHERANFORDERUNG
1947	if [[ $do_batch = true ]]
1948	then
1949	done=false
1950	while [[ $done = false ]]
1951	do
1952	if (( memory == 0 ))
1953	then
1954	printf "\n +++ memory demand is undefined"
1955	printf "\n >>> Please type memory in MByte per process as INTEGER:"
1956	printf "\n >>> "
1957	read memory 1>/dev/null 2>&1
1958	else
1959	done=true
1960	fi
1961	done
1962	fi
1963
1964
1965	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
1966	if [[ $do_remote = true && -z $remote_username ]]
1967	then
1968	while [[ -z $remote_username ]]
1969	do
1970	printf "\n +++ username on remote host \"$host\" is undefined"
1971	printf "\n >>> Please type username:"
1972	printf "\n >>> "
1973	read remote_username
1974	done
1975	mc="$mc -u$remote_username"
1976	fi
1977
1978	# CHECK FOR INITIAL COMMANDS AFTER LOGIN
1979	if [[ "$login_init_cmd" != "" ]]
1980	then
1981	export init_cmds="${login_init_cmd};"
1982	fi
1983
1984
1985	# set module load command and export for subjob
1986	if [[ "$modules" != "" ]]
1987	then
1988	if [[ $host = lctit ]]
1989	then
1990	export module_calls=". $modules"
1991	else
1992	export module_calls="module load ${modules};"
1993	fi
1994	fi
1995
1996	# bugfix for wrong netcdf module and for netCDF4 usage in case of mpt
1997	if [[ $host = lcsgib \|\| $host = lcsgih ]]
1998	then
1999	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
2000	then
2001	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
2002	fi
2003	# if [[ $(echo $module_calls \| grep -c mpt) != 0 ]]
2004	# then
2005	# export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/sgi/mpt/2011-02-07/lib:\$LD_LIBRARY_PATH;"
2006	# echo "*** module_calls = $module_calls"
2007	# fi
2008	fi
2009
2010
2011	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
2012	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2013	then
2014	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
2015	then
2016	mpilib=mpt
2017	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
2018	then
2019	mpilib=mvapich
2020	elif [[ $(echo $modules \| grep -c impi ) != 0 ]]
2021	then
2022	mpilib=impi
2023	fi
2024	fi
2025
2026
2027
2028	###########################################################################
2029	# HEADER-AUSGABE
2030	###########################################################################
2031
2032
2033	calltime=$(date)
2034	printf "\n"
2035	# [[ $silent = false ]] && clear
2036	printf "#------------------------------------------------------------------------# \n"
2037	printf "\| %-35s%35s \| \n" "$version" "$calltime"
2038	printf "\| \| \n"
2039	spalte1="called on:"; spalte2=$localhost_realname
2040	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2041	if [[ $local_compile = false ]]
2042	then
2043	if [[ $do_remote = true ]]
2044	then
2045	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2046	else
2047	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2048	fi
2049	else
2050	spalte1="compiling test only!"; spalte2=""
2051	fi
2052	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2053	if [[ -n $numprocs ]]
2054	then
2055	if [[ $run_coupled_model = false ]]
2056	then
2057	spalte1="number of PEs:"; spalte2=$numprocs
2058	else
2059	spalte1="number of PEs:"; spalte2="$numprocs (atmosphere: $numprocs_atmos, ocean: $numprocs_ocean)"
2060	fi
2061	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2062	fi
2063	if [[ -n $tasks_per_node ]]
2064	then
2065	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2066	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2067	fi
2068	if [[ $maximum_parallel_io_streams != $numprocs ]]
2069	then
2070	spalte1="max par io streams:"; spalte2="$maximum_parallel_io_streams"
2071	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2072	fi
2073	if [[ $use_openmp = true ]]
2074	then
2075	spalte1="threads per task:"; spalte2="$threads_per_task"
2076	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2077	fi
2078	printf "\| \| \n"
2079	if [[ $do_compile = true ]]
2080	then
2081	if [[ "$mopts" != "" ]]
2082	then
2083	spalte1="make options:"; spalte2=$(echo "$mopts" \| cut -c-45)
2084	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2085	zeile=$(echo "$mopts" \| cut -c46-)
2086	while [[ "$zeile" != "" ]]
2087	do
2088	spalte1=""
2089	spalte2=$(echo "$zeile" \| cut -c-45)
2090	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2091	zeile=$(echo "$zeile" \| cut -c46-)
2092	done
2093	fi
2094
2095	spalte1="cpp directives:"; spalte2=$(echo "$cpp_options" \| cut -c-45)
2096	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2097	zeile=$(echo "$cpp_options" \| cut -c46-)
2098	while [[ "$zeile" != "" ]]
2099	do
2100	spalte1=""
2101	spalte2=$(echo "$zeile" \| cut -c-45)
2102	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2103	zeile=$(echo "$zeile" \| cut -c46-)
2104	done
2105
2106	spalte1="compiler options:"; spalte2=$(echo "$fopts" \| cut -c-45)
2107	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2108	zeile=$(echo "$fopts" \| cut -c46-)
2109	while [[ "$zeile" != "" ]]
2110	do
2111	spalte1=""
2112	spalte2=$(echo "$zeile" \| cut -c-45)
2113	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2114	zeile=$(echo "$zeile" \| cut -c46-)
2115	done
2116
2117	spalte1="linker options:"; spalte2=$(echo "$lopts" \| cut -c-45)
2118	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2119	zeile=$(echo "$lopts" \| cut -c46-)
2120	while [[ "$zeile" != "" ]]
2121	do
2122	spalte1=""
2123	spalte2=$(echo "$zeile" \| cut -c-45)
2124	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2125	zeile=$(echo "$zeile" \| cut -c46-)
2126	done
2127
2128	spalte1="modules to be load:"; spalte2=$(echo "$modules" \| cut -c-45)
2129	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2130	zeile=$(echo "$modules" \| cut -c46-)
2131	while [[ "$zeile" != "" ]]
2132	do
2133	spalte1=""
2134	spalte2=$(echo "$zeile" \| cut -c-45)
2135	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2136	zeile=$(echo "$zeile" \| cut -c46-)
2137	done
2138
2139	spalte1="main program:"; spalte2=$mainprog
2140	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2141	else
2142	spalte1=executable:; spalte2=$executable
2143	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2144	fi
2145	printf "\| \| \n"
2146	spalte1="base name of files:"; spalte2=$fname
2147	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2148	if [[ $fname != $afname ]]
2149	then
2150	spalte1="base name of input files:"; spalte2=$afname
2151	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2152	fi
2153	spalte1="INPUT control list:"; spalte2=$(echo $input_list)
2154	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2155	spalte1="OUTPUT control list:"; spalte2=$(echo $output_list)
2156	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2157
2158	if [[ "$ocean_file_appendix" = true ]]
2159	then
2160	printf "\| %-35s%-35s \| \n" "suffix \"_O\" is added to local files" " "
2161	fi
2162
2163	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2164	then
2165	spalte1="memory demand / PE":; spalte2="$memory MB"
2166	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2167	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2168	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2169	fi
2170
2171	if [[ $do_compile = true ]]
2172	then
2173	printf "\| \| \n"
2174	printf "\| Files to be compiled: \| \n"
2175	zeile=$source_list
2176	while [[ "$zeile" != "" ]]
2177	do
2178	linestart=$(echo $zeile \| cut -c-70)
2179	printf "\| %-70s \| \n" "$linestart"
2180	zeile=$(echo "$zeile" \| cut -c71-)
2181	done
2182	fi
2183	printf "#------------------------------------------------------------------------#"
2184
2185
2186
2187	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2188	if [[ $do_trace = true ]]
2189	then
2190	(( i = 0 ))
2191	while (( i < iin ))
2192	do
2193	(( i = i + 1 ))
2194	if (( i == 1 ))
2195	then
2196	printf "\n\n >>> INPUT-file assignments:\n"
2197	fi
2198	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2199	done
2200	(( i = 0 ))
2201	while (( i < iout ))
2202	do
2203	(( i = i + 1 ))
2204	if (( i == 1 ))
2205	then
2206	printf "\n\n >>> OUTPUT-file assignments:\n"
2207	fi
2208	printf "\n ${localout[$i]} : ${pathout[$i]}"
2209	done
2210	(( i = 0 ))
2211	while (( i < iic ))
2212	do
2213	(( i = i + 1 ))
2214	if (( i == 1 ))
2215	then
2216	printf "\n\n >>> INPUT-commands:\n"
2217	fi
2218	printf "\n ${in_command[$i]}"
2219	done
2220	(( i = 0 ))
2221	while (( i < ioc ))
2222	do
2223	(( i = i + 1 ))
2224	if (( i == 1 ))
2225	then
2226	printf "\n\n >>> OUTPUT-commands:\n"
2227	fi
2228	printf "\n ${out_command[$i]}"
2229	done
2230	fi
2231
2232
2233	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2234	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2235	then
2236	antwort=dummy
2237	printf "\n\n"
2238	printf " >>> everything o.k. (y/n) ? "
2239	while read antwort
2240	do
2241	if [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2242	then
2243	printf " >>> everything o.k. (y/n) ? "
2244	else
2245	break
2246	fi
2247	done
2248	if [[ $antwort = n \|\| $antwort = N ]]
2249	then
2250	locat=user_abort; (( iec = 0 )); exit
2251	fi
2252	if [[ $do_batch = true ]]
2253	then
2254	printf " >>> batch-job will be created and submitted"
2255	else
2256	if [[ $local_compile = false ]]
2257	then
2258	printf " >>> MRUN will now continue to execute on this machine"
2259	else
2260	printf " >>> a test compilation will now be carried out on this machine"
2261	fi
2262	fi
2263	fi
2264
2265
2266	# PERFORM PARAMETER FILE CHECK (COUPLED RUNS ARE NOT SUPPORTED YET)
2267	# DEFINE VARIABLES FOR FREQUENTLY USED DIRECTORIES
2268	check_depository="${working_directory}/trunk/UTIL"
2269	check_sources="${working_directory}/tmp_check_namelist_files"
2270	skip_check=false
2271
2272	# CHECK IF NAMELIST_FILE_CHECK HAS BEEN COMPILED SUCCESSFULLY
2273	if [[ ! -f $check_depository/check_namelist_files.tar ]]
2274	then
2275	skip_check=true
2276	reason="run on remote host or parameter file check has not been compiled."
2277	fi
2278	if [[ ! -f $PALM_BIN/check_namelist_files.x ]]
2279	then
2280	skip_check=true
2281	reason="parameter file check has not been compiled."
2282	fi
2283
2284	# CHECK FOR PARALLEL RUN; OTHERWISE SKIP CHECK
2285	if [[ "$cond1" != "parallel" && "$cond2" != "parallel" ]]
2286	then
2287	skip_check=true
2288	reason="serial run."
2289	fi
2290
2291	# ONLY PERFORM CHECK IF -z OPTION IS NOT SET, NO RESTART RUN IS CARRIED OUT
2292	# AND IF THE EXECUTION HOST IS THE LOCAL HOST
2293	# ATTENTION: THIS ROUTINE DOES NOT WORK IF THE COMPILER ON THE LOCAL HOST
2294	# DIFFERS FROM THE COMPILER ON THE REMOTE HOST
2295	if [[ $check_namelist_files == false ]]
2296	then
2297	skip_check=true
2298	reason="-z option set."
2299	fi
2300
2301	if [[ $fromhost != $localhost ]]
2302	then
2303	skip_check=true
2304	reason="submitting host is local host."
2305	fi
2306
2307	if [[ $run_coupled_model == true ]]
2308	then
2309	skip_check=true
2310	reason="coupled run."
2311	fi
2312
2313	if [[ $restart_run == true ]]
2314	then
2315	skip_check=true
2316	reason="restart run."
2317	fi
2318
2319	# SKIP CHECK IN CASE OF RESTART RUN: CHECK WHETHER THE LAST CHAR IS "f" IN PARIN
2320	(( last_char_int = `echo $filename_input \| wc -c` - 1 ))
2321	last_char=`echo $filename_input \| cut -c $last_char_int`
2322	if [[ "$last_char" == "f" ]]
2323	then
2324	skip_check=true
2325	reason="restart run."
2326	fi
2327
2328	if [[ $skip_check == false ]]
2329	then
2330	tmp_check=${working_directory}/tmp_check
2331
2332	# GET TOPOGRAPHY PARAMETER FILE SUFFIX (USUALLY "_P3DF"). THIS FILE MIGHT IS
2333	# NOT NECESSARILY REQUIRED
2334	line=""
2335	found=false
2336	grep "TOPOGRAPHY_DATA" $config_file > $tmp_check
2337	while read line1
2338	do
2339	line="$line1"
2340	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2341	then
2342	topo_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2343	found=true
2344	fi
2345	done < $tmp_check
2346
2347	if [[ $found = false ]]
2348	then
2349	printf "\n +++ no TOPOGRAPHY list entry found in the configuration file."
2350	fi
2351
2352	rm -rf ${working_directory}/tmp_check
2353
2354	# CHECK IF THE A P3DF FILE MUST BE CHECKED
2355	for item in $input_list
2356	do
2357	if [[ "$item" == "restart" ]]
2358	then
2359	check_restart=1
2360	else
2361	check_restart=0
2362	fi
2363	done
2364
2365	# ERROR IF NO PARAMETER FILE WAS FOUND, OTHERWISE PROCEED
2366	if [[ (! -f $filename_input) && ( "$filename_input" != "" ) ]]
2367	then
2368	printf "\n\n +++ ERROR: parameter file ($filename_input) not found."
2369	locat=check_namelist; exit
2370	fi
2371
2372	# CHECK IF THE RESTART PARAMETER FILE EXISTS (IF NECESSARY)
2373	if [[ $check_restart == 1 ]]
2374	then
2375
2376	filenamef="${filename_input}f"
2377	if [[ ! -f $filenamef ]]
2378	then
2379	printf "\n\n +++ WARNING: restart parameter file ($filenamef) is missing."
2380	check_restart=0
2381	answer=dummy
2382	printf "\n\n"
2383
2384	if [[ $silent == false ]]
2385	then
2386	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2387	do
2388	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2389	read answer
2390	done
2391	if [[ $answer = a \|\| $answer = A ]]
2392	then
2393	printf "\n +++ Aborting...."
2394	locat=normal; exit
2395	fi
2396	fi
2397	else
2398	check_restart=1
2399	fi
2400	fi
2401
2402	# CREATE TEMPORARY SOURCES_FOR_CHECK PATH
2403	mkdir $check_sources
2404	cd $check_sources
2405
2406
2407	# CHECK FOR USER CODE, OTHERWISE USE THE PRECOMPILED CHECK_NAMELIST_FILES.X
2408	if [[ -d $add_source_path ]]
2409	then
2410	printf "\n\n *** copying files from $check_depository"
2411	cp $check_depository/check_namelist_files.tar ./
2412
2413	printf "\n\n *** untar of makefile and source files in $check_sources"
2414	tar -xf check_namelist_files.tar > /dev/null 2>&1
2415
2416	printf "\n\n *** adding user code."
2417	cp $add_source_path/* ./
2418	touch check_namelist_files.f90
2419
2420	# GET COMPILER OPTIONS AND PERFORM MAKE
2421	printf "\n\n *** compiling code if necessary...\n"
2422
2423	# workaround for batch jobs on local machine (lcxe6)
2424	if [[ $do_batch == true && $do_remote == false ]]
2425	then
2426	eval $init_cmds
2427	fi
2428
2429	# GET CHECK OPTIONS
2430	line=""
2431	found=false
2432
2433	grep "$localhost" ${base_directory}/${config_file} \| grep "%cpp_options" > $tmp_check
2434
2435	while read line1
2436	do
2437
2438	if [[ $(echo $line1 \| cut -d" " -s -f3-) = "$localhost" ]]
2439	then
2440	line="$line1"
2441	fi
2442
2443	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2444	then
2445	# EVENTUELLE DOPPELPUNKTE AUS OPTIONSSTRING UND ALLE -D ENTFERNEN
2446	line="$line "
2447	copts_check=`echo $line \| cut -d" " -s -f2 \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g' \| sed 's/-D[^ ]* //g' \| sed 's/ -D.*//g'`
2448	found=true
2449	fi
2450
2451	done < $tmp_check
2452	copts_check="$copts_check -D__check -D__parallel"
2453
2454	make -f Makefile_check F90=$compiler_name_ser COPT="$copts_check"
2455
2456	# GET MAKE OUTPUT
2457	if [[ $? != 0 ]]
2458	then
2459	printf "\n +++ error during make."
2460	answer=dummy
2461	printf "\n\n"
2462	if [[ $silent == false ]]
2463	then
2464	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2465	do
2466	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2467	read answer
2468	done
2469	if [[ $answer = a \|\| $answer = A ]]
2470	then
2471	printf "\n +++ Aborting..."
2472	rm -rf $check_sources
2473	locat=normal; exit
2474	else
2475	skip_check=true
2476	fi
2477	else
2478	skip_check=true
2479	fi
2480	fi
2481	else
2482	cp $PALM_BIN/check_namelist_files.x ./
2483	fi
2484
2485	cp $filename_input ./PARIN
2486	if [[ $check_restart == 1 ]]
2487	then
2488	cp $filenamef ./PARINF
2489	fi
2490
2491	if [[ -f ${pathname}/${fname}${topo_suffix} && $skip_check == false ]]
2492	then
2493	printf "\n *** adding topography data"
2494	cp ${pathname}/${fname}${topo_suffix} ./TOPOGRAPHY_DATA
2495
2496	# IN CASE OF TOPOGRAPHY AND HIGH GRID POINT NUMBERS, THE STACK SIZE
2497	# MUST BE INCREASED. THIS IS DUE TO THE ARRAY nzb_local AND topo_height,
2498	# WHICH REQUIRE SUFFICIENT MEMORY
2499	ulimit -s unlimited
2500	fi
2501
2502	# CREATE ENVPAR FILE, WHICH IS NEEDED BY CHECK_NAMELIST_FILES.X
2503	cat > ENVPAR << %%END%%
2504	&envpar run_identifier = '$fname', host = '$host',
2505	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2506	maximum_parallel_io_streams = $maximum_parallel_io_streams,
2507	maximum_cpu_time_allowed = ${cpumax}.,
2508	revision = '$global_revision',
2509	local_dvrserver_running = $local_dvrserver_running /
2510
2511	%%END%%
2512
2513	# SAFETY CHECK: ONLY PROCEED IF THE PARAMETER CHECK PROGRAM WAS PROPERLY COMPILED
2514	if [[ ! -f check_namelist_files.x && $skip_check == false ]]
2515	then
2516	printf "\n +++ WARNING: check_namelist_files.x not found."
2517	answer=dummy
2518	printf "\n\n"
2519
2520	if [[ $silent == false ]]
2521	then
2522	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2523	do
2524	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2525	read answer
2526	done
2527	if [[ $answer = a \|\| $answer = A ]]
2528	then
2529	printf "\n +++ Aborting..."
2530	rm -rf $check_sources
2531	locat=normal; exit
2532	else
2533	printf "\n *** skipping parameter file check."
2534	fi
2535	fi
2536
2537	elif [[ $skip_check == false ]]
2538	then
2539	# STARTING THE PARAMETER FILE CHECK
2540	printf "\n\n *** starting parameter file check..."
2541
2542	# CHECKING THE P3D FILE
2543	printf "\n\n (1) checking $filename_input"
2544	echo "$numprocs 0 0" > VARIN
2545	errors=`./check_namelist_files.x < VARIN 2>&1`
2546
2547	check_error=false
2548	if [[ "$errors" == "" ]]
2549	then
2550	printf " --> o.k."
2551	else
2552	printf " --> failed."
2553	check_error=true
2554	printf "\n\n $errors"
2555	fi
2556
2557	# CHECKING THE PD3F FILE IF NECESSARY
2558	if [[ $check_restart == 1 && $check_error == false ]]
2559	then
2560	printf "\n\n (2) checking $filenamef"
2561
2562	# FIRST CHECK IF INITIALIZING_ACTIONS="READ_RESTART_DATA" IS SET
2563	# IN &INIPAR LIST
2564	found=false
2565	cat PARINF \| while read line
2566	do
2567	line=$(echo $line\|sed 's/ //g')
2568	if [[ $line == "&inipar" ]]
2569	then
2570	start_search=true
2571	fi
2572
2573	if [[ $start_search == true ]]
2574	then
2575	if [[ $line == "initializing_actions='read_restart_data'" ]]
2576	then
2577	found=true
2578	break
2579	fi
2580	fi
2581
2582	if [[ $line == "/" ]]
2583	then
2584	start_search=false
2585	fi
2586
2587	done
2588
2589	if [[ $found = false ]]
2590	then
2591	printf "\n\n +++ ERROR: initializing_actions = 'read_restart_data' not found"
2592	printf "\n in &inipar list in $fname$p3df_suffix."
2593	rm -rf $check_sources
2594	locat=check_namelist; exit
2595	fi
2596
2597	# READ max_user_pr FROM FILES
2598	if [[ -f parin_for_check ]]
2599	then
2600	read max_pr_user < parin_for_check
2601	else
2602	max_user_pr=0
2603	fi
2604
2605	echo "$numprocs 1 $max_pr_user" > VARIN
2606	errors=`./check_namelist_files.x < VARIN 2>&1`
2607
2608	if [[ "$errors" == "" ]]
2609	then
2610	printf " --> o.k."
2611	else
2612	printf " --> failed."
2613	check_error=true
2614	printf "\n\n $errors"
2615	fi
2616	fi
2617
2618	# REPORT ERRORS AND CONTINUE/EXIT
2619	if [[ $check_error == true ]]
2620	then
2621	printf "\n +++ errors found in the parameter file!\n"
2622	answer=dummy
2623	printf "\n\n"
2624
2625	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2626	do
2627	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2628	read answer
2629	done
2630
2631	if [[ $answer = a \|\| $answer = A ]]
2632	then
2633	printf "\n +++ Aborting..."
2634	rm -rf $check_sources
2635	locat=normal; exit
2636	fi
2637	else
2638	printf "\n\n *** parameter file(s) seem(s) to be o.k.\n"
2639	fi
2640	rm -rf $check_sources
2641	fi
2642	else
2643	printf "\n\n +++ skipping parameter file check due to following reason: $reason \n"
2644	fi
2645
2646	# DELETE TEMPORARY DIRECTORY AND FINISH NAMELIST FILE CHECK
2647	rm -rf $check_sources
2648	cd $working_directory
2649
2650
2651	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2652	# CHENDE AKTIONEN DURCHGEFUEHRT
2653	if [[ $do_batch = false ]]
2654	then
2655
2656
2657	# TEMPORAEREN KATALOG ERZEUGEN
2658	mkdir -p $TEMPDIR
2659	chmod go+rx $TEMPDIR
2660	tmpcreate=true
2661
2662	# set striping on lustre file system
2663	# if [[ $localhost = lcsgih ]]
2664	# then
2665	# lfs setstripe -s 8192k -c 16 $TEMPDIR
2666	# lfs getstripe $TEMPDIR
2667	# fi
2668
2669
2670	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2671	# TEMPORAERES VERZEICHNIS KOPIEREN
2672	if [[ $do_compile = true ]]
2673	then
2674
2675	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2676	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2677	if [[ $localhost = nech ]]
2678	then
2679	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2680	if mkdir -p $TEMPDIR_COMPILE
2681	then
2682	printf "\n *** \"$TEMPDIR_COMPILE\" "
2683	printf "\n is generated as temporary directory for cross compiling\n"
2684	else
2685	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2686	printf "\n needed for cross compilation failed"
2687	locat=compile
2688	exit
2689	fi
2690	else
2691	TEMPDIR_COMPILE=$TEMPDIR
2692	fi
2693
2694
2695	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2696	line=""
2697	grep "%depository_path" $config_file > tmp_mrun
2698	while read line
2699	do
2700	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2701	then
2702	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2703	then
2704	global_depository_path=`echo $line \| cut -d" " -s -f2`
2705	fi
2706	fi
2707	done < tmp_mrun
2708
2709	line=""
2710	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2711	while read line
2712	do
2713	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2714	then
2715	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2716	then
2717	local_depository_path=`echo $line \| cut -d" " -s -f2`
2718	fi
2719	fi
2720	done < tmp_mrun
2721
2722	if [[ "$local_depository_path" = "" ]]
2723	then
2724	if [[ "$global_depository_path" != "" ]]
2725	then
2726	local_depository_path=$global_depository_path
2727	else
2728	printf "\n\n +++ no depository path found in configuration file"
2729	printf "\n for local host \"$localhost\" "
2730	printf "\n please set \"\%depository_path\" in configuration file\n"
2731	locat=config_file; exit
2732	fi
2733	fi
2734	eval local_depository_path=$local_depository_path
2735	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2736	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2737
2738
2739	basename=`echo $mainprog \| cut -f1 -d"."`
2740	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2741	if [[ ! -f $make_depository ]]
2742	then
2743	printf "\n"
2744	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2745	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2746	else
2747	cp $make_depository $TEMPDIR_COMPILE
2748	cd $TEMPDIR_COMPILE
2749	tar -xf $make_depository > /dev/null 2>&1
2750	cd - > /dev/null
2751	fi
2752
2753	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2754
2755	else
2756
2757	cp $executable ${TEMPDIR}/a.out
2758
2759	fi
2760
2761
2762	# WECHSEL IN TEMPORAEREN KATALOG
2763	cd $TEMPDIR
2764	printf "\n *** changed to temporary directory: $TEMPDIR"
2765
2766
2767	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2768	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2769	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2770	# ERMITTELN
2771	(( i = 0 ))
2772	while (( i < iout ))
2773	do
2774	(( i = i + 1 ))
2775	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2776	then
2777	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2778	else
2779	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2780	fi
2781	done
2782
2783
2784	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2785	if [[ $do_compile = true ]]
2786	then
2787
2788
2789	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2790	printf "\n\n\n *** compilation starts \n$striche\n"
2791	printf " *** compilation with make using following options:\n"
2792	printf " make depository: $make_depository"
2793	if [[ "$mopts" != "" ]]
2794	then
2795	printf " make options: $mopts\n"
2796	fi
2797	printf " compilername: $compiler_name\n"
2798	printf " compiler options: $fopts\n"
2799	printf " preprocessor directives: $cpp_options \n"
2800	printf " linker options: $lopts \n"
2801	if [[ "$modules" != "" ]]
2802	then
2803	printf " modules to be load: $modules \n"
2804	fi
2805	printf " source code files: $source_list \n"
2806
2807	if [[ $localhost = nech ]]
2808	then
2809	# init_cmds was ". /SX/opt/etc/initsx.sh;"
2810	ssh $SSH_PORTOPT 136.172.44.192 -l $usern "$init_cmds $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2811	cp $TEMPDIR_COMPILE/a.out .
2812	[[ $? != 0 ]] && compile_error=true
2813	rm -rf $TEMPDIR_COMPILE
2814	elif [[ $localhost = ibmh ]]
2815	then
2816	printf " compiler is called via ssh on \"plogin1\" \n"
2817	ssh $SSH_PORTOPT plogin1 -l $usern "$init_cmds export PATH=/sw/ibm/xlf/13.1.0.8/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2818	[[ ! -f a.out ]] && compile_error=true
2819	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2820	elif [[ $localhost = lcsgib ]]
2821	then
2822	printf " compiler is called via ssh on \"bicegate0\" \n"
2823	ssh $SSH_PORTOPT bicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2824	[[ ! -f a.out ]] && compile_error=true
2825	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2826	elif [[ $localhost = lcsgih ]]
2827	then
2828	printf " compiler is called via ssh on \"hicegate0\" \n"
2829	ssh $SSH_PORTOPT hicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2830	[[ ! -f a.out ]] && compile_error=true
2831	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2832	elif [[ $localhost = lcflow ]]
2833	then
2834	printf " compiler is called via ssh on \"flow\" \n"
2835	ssh $SSH_PORTOPT flow02.hpc.uni-oldenburg.de -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2836	[[ ! -f a.out ]] && compile_error=true
2837	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2838	else
2839	[[ "$init_cmds" != "" ]] && eval $init_cmds
2840	[[ "$module_calls" != "" ]] && eval $module_calls
2841	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2842
2843	fi
2844
2845	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2846	then
2847	printf "\n +++ error occured while compiling or linking"
2848	locat=compile
2849
2850	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
2851	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
2852	# then
2853	exit
2854	# else
2855	# locat=normal
2856	# fi
2857	else
2858	printf "$striche\n *** compilation finished \n"
2859	fi
2860	fi
2861
2862
2863	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2864	if [[ $local_compile = true ]]
2865	then
2866	cd $HOME
2867	rm -rf $TEMPDIR
2868	locat=local_compile; exit
2869	fi
2870
2871
2872	# BEREITSTELLEN DER INPUT-DATEIEN
2873	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2874	(( i = 0 ))
2875	while (( i < iin ))
2876	do
2877	(( i = i + 1 ))
2878	if (( i == 1 ))
2879	then
2880	printf "\n\n *** providing INPUT-files:\n$striche"
2881	fi
2882
2883
2884	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2885	if [[ "${transin[$i]}" = unavailable ]]
2886	then
2887	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2888	then
2889	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2890	printf "\n is not available!"
2891	else
2892	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2893	printf "\n is not available!"
2894	fi
2895	continue
2896	fi
2897
2898	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2899	files_for_pes=false; datentyp=file
2900	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2901	then
2902	files_for_pes=true; datentyp=directory
2903	actionin[$i]=""
2904	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2905	then
2906	actionin[$i]=""
2907	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2908	then
2909	files_for_pes=true; datentyp=directory
2910	actionin[$i]="ar"
2911	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2912	then
2913	actionin[$i]="ar"
2914	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2915	then
2916	files_for_pes=true; datentyp=directory
2917	actionin[$i]="fl"
2918	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2919	then
2920	actionin[$i]="fl"
2921	fi
2922
2923	if [[ $files_for_pes = true ]]
2924	then
2925	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
2926	else
2927	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
2928	fi
2929
2930	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
2931	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
2932	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
2933	# SERVER ZU HOLEN
2934	if [[ "${actionin[$i]}" = fl ]]
2935	then
2936	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
2937	if [[ $files_for_pes = false ]]
2938	then
2939	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
2940	then
2941	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
2942	got_tmp[$i]=true
2943	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2944	then
2945	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2946	printf "\n *** trying to use backup copy in \"$WORK\" "
2947	cp $WORK/${frelin[$i]} ${localin[$i]}
2948	else
2949	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2950	printf "\n or \"$tmp_data_catalog\" does not exist!"
2951	printf "\n *** trying to get copy from archive"
2952	actionin[$i]=ar
2953	fi
2954	else
2955	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
2956	then
2957	mkdir ${localin[$i]}
2958	cd $tmp_data_catalog/${frelin[$i]}
2959	for file in $(ls *)
2960	do
2961	ln $file $TEMPDIR/${localin[$i]}
2962	done
2963	cd $TEMPDIR
2964	got_tmp[$i]=true
2965	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2966	then
2967	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2968	printf "\n *** trying to use backup copy in \"$WORK\" "
2969	cp -r $WORK/${frelin[$i]} ${localin[$i]}
2970	else
2971	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2972	printf "\n or \"$tmp_data_catalog\" does not exist!"
2973	printf "\n *** trying to get copy from archive"
2974	actionin[$i]=ar
2975	fi
2976	fi
2977	fi
2978
2979
2980	# DATEI LIEGT AUF ARCHIV-SERVER
2981	if [[ "${actionin[$i]}" = ar ]]
2982	then
2983
2984	if [[ $files_for_pes = false ]]
2985	then
2986	printf "\n file will be restored from archive-system ($archive_system)!"
2987	else
2988	printf "\n directory will be restored from archive-system ($archive_system)!"
2989	fi
2990
2991	file_restored=false
2992
2993	if [[ $archive_system = asterix ]]
2994	then
2995	do_stagein=true
2996	(( stagein_anz = 0 ))
2997	while [[ $do_stagein = true ]]
2998	do
2999	if [[ $files_for_pes = false ]]
3000	then
3001	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
3002	else
3003	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
3004	fi
3005	cat STAGEIN_OUTPUT
3006	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
3007	then
3008	file_restored=true
3009	do_stagein=false
3010	else
3011	(( stagein_anz = stagein_anz + 1 ))
3012	if (( stagein_anz == 10 ))
3013	then
3014	printf "\n +++ stagein stoped after 10 tries"
3015	locat=stage
3016	exit
3017	fi
3018	printf "\n +++ restoring from archive failed, trying again:"
3019	sleep 900
3020	fi
3021	done
3022	elif [[ $archive_system = DMF ]]
3023	then
3024	if [[ $files_for_pes = false ]]
3025	then
3026	printf "\n +++ restoring of single files impossible with $archive_system !\n"
3027	locat=DMF
3028	exit
3029	else
3030	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
3031	cp -r $ARCHIVE/${frelin[$i]} $PWD
3032	file_restored=true
3033	fi
3034	elif [[ $archive_system = tivoli ]]
3035	then
3036	if [[ $files_for_pes = false ]]
3037	then
3038	if [[ $localhost = lcsgih ]]
3039	then
3040	ssh $SSH_PORTOPT $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3041	else
3042	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3043	fi
3044	else
3045	(( inode = 0 ))
3046	while (( inode < nodes ))
3047	do
3048	if [[ $localhost = lcsgih ]]
3049	then
3050	ssh $SSH_PORTOPT $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3051	else
3052	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3053	fi
3054	(( inode = inode + 1 ))
3055	done
3056	fi
3057	file_restored=true
3058	elif [[ $archive_system = ut ]]
3059	then
3060	if [[ $files_for_pes = false ]]
3061	then
3062	cp $UT/${frelin[$i]} .
3063	else
3064	(( inode = 0 ))
3065	while (( inode < nodes ))
3066	do
3067	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
3068	(( inode = inode + 1 ))
3069	done
3070	fi
3071	file_restored=true
3072	else
3073	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
3074	locat=rearchive
3075	exit
3076	fi
3077
3078	if [[ $file_restored = true ]]
3079	then
3080
3081	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
3082	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
3083	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
3084	if [[ $files_for_pes = false ]]
3085	then
3086	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
3087	else
3088	mkdir $tmp_data_catalog/${frelin[$i]}
3089	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
3090	fi
3091	got_tmp[$i]=true
3092
3093	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
3094	mv ${frelin[$i]} ${localin[$i]}
3095
3096	fi
3097	fi
3098
3099
3100	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
3101	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
3102	then
3103
3104	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
3105	then
3106
3107	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
3108	printf "\n file will be provided for $numprocs processors"
3109	mkdir ${localin[$i]}
3110	ival=$numprocs
3111	(( ii = 0 ))
3112	while (( ii <= ival-1 ))
3113	do
3114	if (( ii < 10 ))
3115	then
3116	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
3117	elif (( ii < 100 ))
3118	then
3119	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
3120	elif (( ii < 1000 ))
3121	then
3122	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
3123	else
3124	cp ${absnamein[$i]} ${localin[$i]}/_$ii
3125	fi
3126	(( ii = ii + 1 ))
3127	done
3128
3129	else
3130
3131	if [[ $files_for_pes = true ]]
3132	then
3133
3134	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
3135	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
3136	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
3137	# PER MOVE UMBENANNT WERDEN
3138	printf "\n providing $numprocs files for the respective processors"
3139	mkdir ${localin[$i]}
3140	if [[ $link_local_input = true ]]
3141	then
3142	printf " using ln -f\n"
3143	cd ${absnamein[$i]}
3144	for file in $(ls *)
3145	do
3146	ln -f $file ${localin[$i]}
3147	done
3148	cd $TEMPDIR
3149	fi
3150	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
3151	if [[ ! -f "${localin[$i]}/_0000" ]]
3152	then
3153	if [[ $link_local_input = true ]]
3154	then
3155	printf " ln failed for .../_0000, using cp...\n"
3156	fi
3157	cp -r ${absnamein[$i]}/* ${localin[$i]}
3158	fi
3159
3160	else
3161	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
3162	if [[ $link_local_input = true ]]
3163	then
3164	printf " using ln -f\n"
3165	ln -f ${absnamein[$i]} ${localin[$i]}
3166	fi
3167	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
3168	if [[ ! -f "${localin[$i]}" ]]
3169	then
3170	if [[ $link_local_input = true ]]
3171	then
3172	printf " ln failed, using cp...\n"
3173	fi
3174	cp ${absnamein[$i]} ${localin[$i]}
3175	fi
3176	fi
3177	fi
3178	fi
3179
3180	done
3181	if (( i != 0 ))
3182	then
3183	printf "\n$striche\n *** all INPUT-files provided \n"
3184	fi
3185
3186
3187	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
3188	(( i = 0 ))
3189	while (( i < iic ))
3190	do
3191	(( i = i + 1 ))
3192	if (( i == 1 ))
3193	then
3194	printf "\n\n *** execution of INPUT-commands:\n$striche"
3195	fi
3196	printf "\n >>> ${in_command[$i]}"
3197	eval ${in_command[$i]}
3198	if (( i == iic ))
3199	then
3200	printf "\n$striche\n"
3201	fi
3202	done
3203
3204
3205	# VERBLEIBENDE CPU-ZEIT BERECHNEN
3206	cpurest=${cpumax}.
3207
3208
3209	# START DVR STREAMING SERVER
3210	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3211	then
3212	if [[ "$dvr_server" != "" ]]
3213	then
3214
3215	printf "\n\n *** preparing the dvr streaming server configuration file"
3216
3217	# Check, if a dvr server is already running
3218	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
3219	if [[ "$running_dvrserver_id" != "" ]]
3220	then
3221
3222	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
3223	printf "\n This server is used instead starting a new one!"
3224	printf "\n If required, script \"process_dvr_output\" has to be run manually."
3225
3226	else
3227
3228	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
3229	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
3230	then
3231	cp ${PALM_BIN}/.dvrserver.config .
3232
3233	# Entering the BASEDIR, UID and GID into this file
3234	user_id=`id -u`
3235	group_id=`id -g`
3236	# & is needed as seperator, because TEMPDIR contains /
3237	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
3238	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
3239	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
3240	mv .dvrserver.3 .dvrserver.config
3241	rm .dvrserver.1 .dvrserver.2
3242
3243	# Start dvr server in background, get his id and print on terminal
3244	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
3245	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
3246	printf "\n *** streaming server with id=$dvrserver_id is started in background"
3247	local_dvrserver_running=.TRUE.
3248	else
3249	printf "\n +++ missing file \".dvrserver.config\" in directory:"
3250	printf "\n \"$PALM_BIN\" "
3251	locat=dvr
3252	exit
3253	fi
3254
3255	fi
3256
3257	else
3258	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
3259	fi
3260	fi
3261
3262
3263	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
3264	# LESEN VON PALM)
3265	cat > ENVPAR << %%END%%
3266	&envpar run_identifier = '$fname', host = '$localhost',
3267	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
3268	maximum_parallel_io_streams = $maximum_parallel_io_streams,
3269	maximum_cpu_time_allowed = ${cpumax}.,
3270	revision = '$global_revision',
3271	local_dvrserver_running = $local_dvrserver_running /
3272
3273	%%END%%
3274
3275
3276	# PROGRAMMSTART
3277	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
3278	PATH=$PATH:$TEMPDIR
3279
3280	# MPI debug option (argument checking, slows down execution due to increased latency)
3281	if [[ "$mpi_debug" = true ]]
3282	then
3283	export MPI_CHECK_ARGS=1
3284	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
3285	fi
3286
3287	if [[ "$totalview" = true ]]
3288	then
3289	printf "\n *** totalview debugger will be used"
3290	tv_opt="-tv"
3291	else
3292	tv_opt=""
3293	fi
3294
3295	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
3296	then
3297	if [[ "$ENVIRONMENT" = BATCH ]]
3298	then
3299	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
3300	then
3301	printf "\n +++ debug is allowed in interactive mode only"
3302	locat=debug
3303	exit
3304	fi
3305	fi
3306	if [[ $localhost = ibmh ]]
3307	then
3308
3309	# SETUP THE IBM MPI ENVIRONMENT
3310	export MP_SHARED_MEMORY=yes
3311	export AIXTHREADS_SCOPE=S
3312	export OMP_NUM_THREADS=$threads_per_task
3313	export AUTHSTATE=files
3314	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3315
3316	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
3317	export MP_ADAPTER_USE=shared
3318	export MP_CPU_USE=multiple
3319	export MP_TIMEOUT=1200
3320
3321	unset MP_TASK_AFFINITY
3322
3323	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
3324	#(( ii = 1 ))
3325	#while (( ii <= $numprocs ))
3326	#do
3327	# echo $localhost_realname >> hostfile
3328	# (( ii = ii + 1 ))
3329	#done
3330	#export MP_HOSTFILE=hostfile
3331
3332	if [[ "$LOADLBATCH" = yes ]]
3333	then
3334	totalview poe a.out $ROPTS
3335	else
3336	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3337	export TVDSVRLAUNCHCMD=ssh
3338	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3339	fi
3340	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
3341	then
3342	# CURRENTLY NO DEBUGGER ON LCSGI
3343	if [[ $run_coupled_model = true ]]
3344	then
3345	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
3346	locat=debug
3347	exit
3348	else
3349	echo "no_coupling" > runfile_atmos
3350	fi
3351	(( ii = $numprocs / $threads_per_task ))
3352	export OMP_NUM_THREADS=$threads_per_task
3353	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3354	if [[ $threads_per_task != 1 ]]
3355	then
3356	printf "\n threads per task: $threads_per_task"
3357	fi
3358	printf "\n\n"
3359	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3360	then
3361	# export MPI_LAUNCH_TIMEOUT=360
3362	if [[ "$totalview" = true ]]
3363	then
3364	printf "\n running totalview debugger"
3365	mpiexec_mpt $tv_opt -n $ii ./a.out $ROPTS < runfile_atmos
3366	else
3367	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3368	fi
3369	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3370	then
3371	# ulimit -s 300000 # A too large stack size causes problems
3372	# export MV2_NUM_PORTS=2
3373	# export MV2_CPU_MAPPING=0:1:2:3
3374	if [[ "$totalview" = true ]]
3375	then
3376	printf "\n running totalview debugger"
3377	mpiexec $tv_opt ./a.out $ROPTS < runfile_atmos
3378	else
3379	mpiexec ./a.out $ROPTS < runfile_atmos
3380	fi
3381	fi
3382	else
3383	printf "\n +++ no debug available on \"$localhost\" "
3384	printf "\n or not implemented in mrun so far"
3385	locat=debug
3386	exit
3387	fi
3388
3389	# end debug mode
3390	else
3391
3392	# normal execution
3393	if [[ -n $numprocs ]]
3394	then
3395	# RUNNING THE PROGRAM ON PARALLEL MACHINES
3396	if [[ $(echo $host \| cut -c1-3) = ibm ]]
3397	then
3398	# SETUP THE IBM MPI ENVIRONMENT
3399	if [[ $host != ibmh && $host != ibmkisti ]]
3400	then
3401	export MP_SHARED_MEMORY=yes
3402	export AIXTHREAD_SCOPE=S
3403	export OMP_NUM_THREADS=$threads_per_task
3404	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
3405	export AUTHSTATE=files
3406	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3407	# export MP_PRINTENV=yes
3408
3409	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3410	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3411	export MP_WAIT_MODE=poll
3412	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3413	fi
3414
3415	if [[ $host = ibmkisti ]]
3416	then
3417	export LANG=en_US
3418	export MP_SHARED_MEMORY=yes
3419	if [[ $threads_per_task = 1 ]]
3420	then
3421	export MP_SINGLE_THREAD=yes
3422	export MEMORY_AFFINITY=MCM
3423	else
3424	export OMP_NUM_THREADS=$threads_per_task
3425	fi
3426	fi
3427
3428	if [[ "$LOADLBATCH" = yes ]]
3429	then
3430	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3431	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3432	then
3433	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3434	else
3435	if [[ $run_coupled_model = false ]]
3436	then
3437	if [[ "$ocean_file_appendix" = true ]]
3438	then
3439	echo "precursor_ocean" > runfile_atmos
3440	else
3441	echo "precursor_atmos" > runfile_atmos
3442	fi
3443	else
3444	(( iia = $numprocs_atmos / $threads_per_task ))
3445	(( iio = $numprocs_ocean / $threads_per_task ))
3446	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3447	printf "\n using $coupled_mode coupling"
3448	printf "\n\n"
3449	echo "coupled_run $iia $iio" > runfile_atmos
3450	fi
3451	poe ./a.out $ROPTS < runfile_atmos
3452	fi
3453	else
3454	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
3455	then
3456	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3457	elif [[ $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibmy ]]
3458	then
3459	if [[ -f $hostfile ]]
3460	then
3461	cp $hostfile hostfile
3462	else
3463	(( ii = 1 ))
3464	while (( ii <= $numprocs ))
3465	do
3466	echo $localhost_realname >> hostfile
3467	(( ii = ii + 1 ))
3468	done
3469	fi
3470	export MP_HOSTFILE=hostfile
3471	if [[ $run_coupled_model = false ]]
3472	then
3473	if [[ "$ocean_file_appendix" = true ]]
3474	then
3475	echo "precursor_ocean" > runfile_atmos
3476	else
3477	echo "precursor_atmos" > runfile_atmos
3478	fi
3479	else
3480	(( iia = $numprocs_atmos / $threads_per_task ))
3481	(( iio = $numprocs_ocean / $threads_per_task ))
3482	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3483	printf "\n using $coupled_mode coupling"
3484	printf "\n\n"
3485	echo "coupled_run $iia $iio" > runfile_atmos
3486	fi
3487	if [[ $localhost = ibmy ]]
3488	then
3489	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3490	else
3491	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
3492	fi
3493
3494	else
3495	if [[ "$host_file" = "" ]]
3496	then
3497	printf "\n +++ no hostfile given in configuration file"
3498	locat=config_file
3499	exit
3500	else
3501	eval host_file=$host_file
3502	fi
3503	export MP_HOSTFILE=$host_file
3504	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3505	fi
3506	fi
3507	elif [[ $host = nech \|\| $host = necriam ]]
3508	then
3509	(( ii = nodes ))
3510	if [[ $ii = 1 ]]
3511	then
3512	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3513	export MPIPROGINF=YES
3514	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3515	echo "*** execution on single node with mpirun"
3516	mpirun -np $numprocs ./a.out $ROPTS
3517	else
3518	(( i = 0 ))
3519	while (( i < ii ))
3520	do
3521	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3522	(( i = i + 1 ))
3523	done
3524
3525	echo "#!/bin/sh" > mpi_exec_shell
3526	echo " " >> mpi_exec_shell
3527	echo "set -u" >> mpi_exec_shell
3528	echo "F_ERRCNT=0" >> mpi_exec_shell
3529	echo "MPIPROGINV=YES" >> mpi_exec_shell
3530	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3531	echo "cpurest=$cpurest" >> mpi_exec_shell
3532	echo "fname=$fname" >> mpi_exec_shell
3533	echo "localhost=$localhost" >> mpi_exec_shell
3534	echo "return_addres=$return_addres" >> mpi_exec_shell
3535	echo "return_username=$return_username" >> mpi_exec_shell
3536	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3537	echo "write_binary=$write_binary" >> mpi_exec_shell
3538	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3539	echo " " >> mpi_exec_shell
3540	echo "export F_ERRCNT" >> mpi_exec_shell
3541	echo "export MPIPROGINV" >> mpi_exec_shell
3542	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3543	echo "export cpurest" >> mpi_exec_shell
3544	echo "export fname" >> mpi_exec_shell
3545	echo "export localhost" >> mpi_exec_shell
3546	echo "export return_addres" >> mpi_exec_shell
3547	echo "export return_username" >> mpi_exec_shell
3548	echo "export tasks_per_node" >> mpi_exec_shell
3549	echo "export write_binary" >> mpi_exec_shell
3550	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3551	echo " " >> mpi_exec_shell
3552	echo "exec ./a.out" >> mpi_exec_shell
3553
3554	chmod u+x mpi_exec_shell
3555	export MPIPROGINF=YES
3556	mpirun -f multinode_config &
3557	wait
3558
3559	fi
3560	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
3561	then
3562
3563	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3564	# DOES NOT EXIST
3565	if [[ $host != lcsgih && $host != lcsgib && $host != lckyuh && $host != lckyut ]]
3566	then
3567	if [[ -f $hostfile ]]
3568	then
3569	cp $hostfile hostfile
3570	(( ii = $numprocs / $threads_per_task ))
3571	else
3572	(( ii = 1 ))
3573	while (( ii <= $numprocs / $threads_per_task ))
3574	do
3575	echo $localhost_realname >> hostfile
3576	(( ii = ii + 1 ))
3577	done
3578	fi
3579	eval zeile=\"`head -n $ii hostfile`\"
3580	printf "\n *** running on: $zeile"
3581	fi
3582
3583	(( ii = $numprocs / $threads_per_task ))
3584	export OMP_NUM_THREADS=$threads_per_task
3585	# echo "*** OMP_NUM_THREADS=$OMP_NUM_THREADS"
3586	if [[ $threads_per_task != 1 ]]
3587	then
3588	# increase stack size to unlimited, because large runs
3589	# may abort otherwise
3590	ulimit -Ss unlimited
3591	printf "\n threads per task: $threads_per_task stacksize: unlimited"
3592	fi
3593	if [[ $run_coupled_model = false ]]
3594	then
3595	if [[ "$ocean_file_appendix" = true ]]
3596	then
3597	echo "precursor_ocean" > runfile_atmos
3598	else
3599	echo "precursor_atmos" > runfile_atmos
3600	fi
3601	printf "\n\n"
3602	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3603	then
3604	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3605	then
3606	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3607	# export MPI_DSM_DISTRIBUTE=1
3608	# MPI_DSM_CPULIST: pin MPI processes to cores
3609	if [[ $use_openmp = false ]]
3610	then
3611	if [[ "$sgi_feature" = ice2 ]]
3612	then
3613	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
3614	else
3615	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3616	fi
3617	else
3618	unset MPI_DSM_CPULIST
3619	fi
3620	# MPI_IB_RAILS: use both IB rails on ICE2
3621	export MPI_BUFS_PER_HOST=512
3622	export MPI_IB_RAILS=2
3623	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3624	export MPI_CONNECTIONS_THRESHOLD=8192
3625	# echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
3626	export MPI_TYPE_DEPTH=20
3627	# echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
3628	export MPI_GROUP_MAX=64
3629	# echo "*** MPI_GROUP_MAX=$MPI_GROUP_MAX"
3630	if [[ $use_openmp = true ]]
3631	then
3632	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3633	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3634	else
3635	mpiexec_mpt -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3636	fi
3637
3638	# next is test for openmp usage
3639	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3640	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
3641	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3642	then
3643	export MV2_NUM_PORTS=2
3644	# The default setting of MV2_CPU_MAPPING gives best results
3645	# export MV2_ENABLE_AFFINITY=1
3646	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3647	# if [[ "$sgi_feature" = ice2 ]]
3648	# then
3649	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
3650	# else
3651	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3652	# fi
3653	if [[ $use_openmp = true ]]
3654	then
3655	unset MV2_CPU_MAPPING
3656	export MV2_ENABLE_AFFINITY=0
3657	fi
3658	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
3659	echo "*** MV2_ENABLE_AFFINITY=$MV2_ENABLE_AFFINITY"
3660	if [[ $use_openmp = true ]]
3661	then
3662	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3663	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3664	else
3665	mpiexec -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3666	fi
3667	elif [[ "$mpilib" = impi ]]
3668	then
3669	echo "mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos"
3670	mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos
3671	fi
3672	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3673	then
3674	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3675	elif [[ $host = lcflow ]]
3676	then
3677	mpiexec -machinefile $TMPDIR/machines -n $ii -env I_MPI_FABRICS shm:ofa a.out < runfile_atmos $ROPTS
3678	elif [[ $host = lcsb ]]
3679	then
3680	mpirun_rsh -hostfile $PBS_NODEFILE -np `cat $PBS_NODEFILE \| wc -l` a.out < runfile_atmos $ROPTS
3681	elif [[ $host = lckiaps ]]
3682	then
3683	mpirun -np $ii -f $PBS_NODEFILE a.out < runfile_atmos $ROPTS
3684	elif [[ $host = lckyu* ]]
3685	then
3686	mpiexec -n $ii --stdin runfile_atmos ./a.out $ROPTS
3687	else
3688	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3689	fi
3690	else
3691
3692	# currently there is no full MPI-2 support on ICE and XT4
3693	(( iia = $numprocs_atmos / $threads_per_task ))
3694	(( iio = $numprocs_ocean / $threads_per_task ))
3695	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3696	printf "\n using $coupled_mode coupling"
3697	printf "\n\n"
3698
3699	if [[ $coupled_mode = "mpi2" ]]
3700	then
3701	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3702	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3703	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3704	then
3705
3706	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3707	then
3708	# export MPI_LAUNCH_TIMEOUT=360
3709	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3710	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3711	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3712	then
3713	# ulimit -s 300000 # A too large stack size causes problems
3714	# export MV2_NUM_PORTS=2
3715	# export MV2_CPU_MAPPING=0:1:2:3
3716	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3717	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3718	fi
3719
3720	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3721	then
3722
3723	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3724	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3725
3726	else
3727	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3728	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3729	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3730	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3731	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3732	fi
3733	wait
3734
3735	else
3736
3737	echo "coupled_run $iia $iio" > runfile_atmos
3738	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3739	then
3740
3741	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3742	then
3743	# export MPI_LAUNCH_TIMEOUT=360
3744	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3745	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3746	then
3747	# ulimit -s 300000 # A too large stack size causes problems
3748	# export MV2_NUM_PORTS=2
3749	# export MV2_CPU_MAPPING=0:1:2:3
3750	mpiexec ./a.out $ROPTS < runfile_atmos
3751	fi
3752
3753	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3754	then
3755
3756	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3757
3758	elif [[ $host = lck \|\| $host = lckordi ]]
3759	then
3760
3761	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3762
3763	elif [[ $host = lckyu* ]]
3764	then
3765
3766	mpiexec -n $ii --stdin runfile_atmos ./a.out $ROPTS
3767
3768	fi
3769	wait
3770	fi
3771
3772	fi
3773	elif [[ $host = lckyoto ]]
3774	then
3775	set -xv
3776	export P4_RSHCOMMAND=plesh
3777	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
3778	if [[ "$ENVIRONMENT" = BATCH ]]
3779	then
3780	if [[ "$cond2" = fujitsu ]]
3781	then
3782	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
3783	elif [[ "cond2" = pgi ]]
3784	then
3785	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
3786	else
3787	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
3788	fi
3789	else
3790	if [[ "$cond2" = "" ]]
3791	then
3792	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
3793	else
3794	mpirun -np $numprocs ./a.out $ROPTS
3795	fi
3796	fi
3797	set +xv
3798	elif [[ $host = lctit ]]
3799	then
3800	export OMP_NUM_THREADS=$threads_per_task
3801	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3802	if [[ "$threads_per_task" != 1 ]]
3803	then
3804	export MV2_ENABLE_AFFINITY=0
3805	fi
3806	echo "----- PBS_NODEFILE content:"
3807	cat $PBS_NODEFILE
3808	echo "-----"
3809	(( ii = $numprocs / $threads_per_task ))
3810	echo "mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS"
3811	mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS
3812	else
3813	mpprun -n $numprocs a.out $ROPTS
3814	fi
3815	[[ $? != 0 ]] && execution_error=true
3816
3817
3818	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3819	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3820	then
3821	apprentice
3822	fi
3823	else
3824	a.out $ROPTS
3825	fi
3826	fi
3827	if [[ $? != 0 \|\| $execution_error = true ]]
3828	then
3829
3830	# ABBRUCH BEI LAUFZEITFEHLER
3831	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3832	printf "\n +++ runtime error occured"
3833	locat=execution
3834	exit
3835	else
3836	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3837	printf "\n$striche\n *** execution finished \n"
3838
3839	# Stop the dvr streaming server and process the dvr output in order
3840	# to create dvrs- and html-files containing all streams
3841	if [[ "$dvrserver_id" != "" ]]
3842	then
3843	kill $dvrserver_id
3844	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3845
3846	# If there is a directory, data have been output by the
3847	# streaming server. Otherwise, user has chosen dvrp_output=local
3848	if [[ -d DATA_DVR ]]
3849	then
3850
3851	# Add the current dvr configuration file to the dvr output
3852	# directory
3853	cp .dvrserver.config DATA_DVR
3854
3855	# Process the dvr output (option -s for also generating
3856	# sequence mode data)
3857	process_dvr_output -d DATA_DVR -f $fname -s
3858
3859	else
3860
3861	# Process the local output
3862	process_dvr_output -l -d DATA_DVR -f $fname
3863
3864	fi
3865
3866	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3867	then
3868
3869	# Process dvr output generated in local mode (dvrp_output=local)
3870	process_dvr_output -l -d DATA_DVR -f $fname
3871
3872	fi
3873	fi
3874
3875
3876
3877	# Call of combine_plot_fields in order to merge single files written
3878	# by each PE into one file.
3879	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
3880	then
3881	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
3882	printf "\n 2d- and/or 3d-data may be incomplete!"
3883	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
3884	elif [[ "$combine_plot_fields" == true ]]
3885	then
3886	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
3887	combine_plot_fields${block}.x
3888	else
3889	# Temporary solution to skip combine_plot_fields. This is necessary in case of huge amount of
3890	# data output. To do: extend this branch by creating a batch job for combine_plot_fields.
3891	printf "\n\n\n *** post-processing: skipping combine_plot_fields (-Z option set) ..."
3892	fi
3893
3894
3895
3896	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3897	(( i = 0 ))
3898	while (( i < ioc ))
3899	do
3900	(( i = i + 1 ))
3901	if (( i == 1 ))
3902	then
3903	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
3904	fi
3905	printf "\n >>> ${out_command[$i]}"
3906	eval ${out_command[$i]}
3907	if (( i == ioc ))
3908	then
3909	printf "\n$striche\n"
3910	fi
3911	done
3912
3913
3914	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
3915	if [[ $do_trace = true ]]
3916	then
3917	printf "\n\n"
3918	ls -al
3919	fi
3920
3921
3922
3923	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
3924	(( i = 0 ))
3925	while (( i < iout ))
3926	do
3927	(( i = i + 1 ))
3928	if (( i == 1 ))
3929	then
3930	printf "\n\n *** saving OUTPUT-files:\n$striche"
3931	fi
3932
3933	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3934	files_for_pes=false; filetyp=file
3935	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
3936	then
3937	files_for_pes=true; filetyp=directory
3938	actionout[$i]=""
3939	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
3940	then
3941	actionout[$i]=""
3942	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
3943	then
3944	files_for_pes=true; filetyp=directory
3945	actionout[$i]="ar"
3946	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
3947	then
3948	actionout[$i]="ar"
3949	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
3950	then
3951	files_for_pes=true; filetyp=directory
3952	actionout[$i]="fl"
3953	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
3954	then
3955	actionout[$i]="fl"
3956	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
3957	then
3958	files_for_pes=true; filetyp=directory
3959	actionout[$i]="tr"
3960	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
3961	then
3962	actionout[$i]="tr"
3963	fi
3964
3965	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
3966	then
3967	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
3968	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
3969	then
3970	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
3971	else
3972
3973
3974	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3975	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3976	# REMOTE-RECHNUNGEN
3977	if [[ "${actionout[$i]}" = tr ]]
3978	then
3979	if [[ $localhost != $fromhost ]]
3980	then
3981	if [[ $files_for_pes = false ]]
3982	then
3983	cps=""
3984	cst=""
3985	else
3986	cps=-c
3987	cst="/"
3988	fi
3989	if [[ $localhost = nech ]]
3990	then
3991
3992	# TRANSFER IN EIGENSTAENDIGEM JOB
3993	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3994	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3995	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3996	if [[ $files_for_pes = false ]]
3997	then
3998	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3999	else
4000	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
4001	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
4002	fi
4003
4004	echo "set -x" > transfer_${localout[$i]}
4005	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4006
4007	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
4008	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
4009	printf "\n or higher cycle\n"
4010	echo "batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4011
4012	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4013
4014	if [[ $localhost = nech ]]
4015	then
4016	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
4017	else
4018	if [[ "$LOGNAME" = b323013 ]]
4019	then
4020	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4021	else
4022	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4023	fi
4024	fi
4025
4026	else
4027
4028	# TRANSFER INNERHALB DIESES JOBS
4029	transfer_failed=false
4030	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
4031	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
4032	batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4033	[[ $? != 0 ]] && transfer_failed=true
4034
4035	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4036	# LOKALER MASCHINE ANLEGEN
4037	if [[ $transfer_failed = true ]]
4038	then
4039	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4040	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4041
4042	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4043	# ANLEGEN.
4044	eval local_catalog=${pathout[$i]}
4045	if [[ ! -d $local_catalog ]]
4046	then
4047	printf " *** local directory does not exist. Trying to create:\n"
4048	printf " $local_catalog \n"
4049	mkdir -p $local_catalog
4050	fi
4051	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4052	transfer_problems=true
4053	fi
4054	fi
4055	else
4056
4057	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
4058	actionout[$i]=""
4059	fi
4060	fi
4061
4062
4063	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
4064	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
4065	# REMOTE-RECHNUNGEN
4066	if [[ "${actionout[$i]}" = tra ]]
4067	then
4068	if [[ $localhost != $fromhost ]]
4069	then
4070	if [[ $localhost = ibmh \|\| $localhost = nech ]]
4071	then
4072
4073	# TRANSFER IN EIGENSTAENDIGEM JOB
4074	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4075	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4076	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4077	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4078
4079	echo "set -x" > transfer_${localout[$i]}
4080	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4081
4082	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
4083	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
4084	printf "\n or higher cycle\n"
4085	echo "batch_scp $PORTOPT -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4086
4087	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4088
4089	if [[ $localhost = nech ]]
4090	then
4091	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
4092	else
4093	if [[ $LOGNAME = b323013 ]]
4094	then
4095	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4096	else
4097	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4098	fi
4099	fi
4100
4101	else
4102
4103	# TRANSFER INNERHALB DIESES JOBS
4104	transfer_failed=false
4105	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
4106	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
4107	batch_scp $PORTOPT -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4108	[[ $? != 0 ]] && transfer_failed=true
4109
4110	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4111	# LOKALER MASCHINE ANLEGEN
4112	if [[ $transfer_failed = true ]]
4113	then
4114	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4115	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4116
4117	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4118	# ANLEGEN
4119	eval local_catalog=${pathout[$i]}
4120	if [[ ! -d $local_catalog ]]
4121	then
4122	printf " *** local directory does not exist. Trying to create:\n"
4123	printf " $local_catalog \n"
4124	mkdir -p $local_catalog
4125	fi
4126
4127	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4128	transfer_problems=true
4129	fi
4130	fi
4131	else
4132
4133	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
4134	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
4135	actionout[$i]=a
4136	fi
4137	fi
4138
4139
4140	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
4141	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
4142	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
4143	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
4144	if [[ "${actionout[$i]}" = fl ]]
4145	then
4146	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4147	chmod g+rx $tmp_data_catalog
4148	if [[ $files_for_pes = false ]]
4149	then
4150	printf "\n >>> OUTPUT: ${localout[$i]} to"
4151	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4152	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
4153	else
4154	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
4155	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4156	mkdir $tmp_data_catalog/${frelout[$i]}
4157	cd ${localout[$i]}
4158	for file in $(ls *)
4159	do
4160	ln -f $file $tmp_data_catalog/${frelout[$i]}
4161	done
4162	cd $TEMPDIR
4163	fi
4164
4165
4166	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
4167	if [[ $store_on_archive_system = true ]]
4168	then
4169
4170	if [[ $archive_system = asterix ]]
4171	then
4172	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4173	if [[ $files_for_pes = false ]]
4174	then
4175	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4176	else
4177	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4178	fi
4179	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4180	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
4181	echo "then" >> archive_${frelout[$i]}
4182	echo " do_stageout=false" >> archive_${frelout[$i]}
4183	echo "else" >> archive_${frelout[$i]}
4184	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
4185	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
4186	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
4187	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
4188	if [[ $files_for_pes = false ]]
4189	then
4190	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
4191	else
4192	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
4193	fi
4194	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
4195	echo "fi" >> archive_${frelout[$i]}
4196	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4197	elif [[ $archive_system = DMF ]]
4198	then
4199	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4200	if [[ $files_for_pes = false ]]
4201	then
4202	printf "\n +++ archiving of single files impossible with $archive_system !\n"
4203	locat=DMF
4204	exit
4205	else
4206	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
4207	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
4208	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
4209	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
4210	fi
4211	elif [[ $archive_system = tivoli ]]
4212	then
4213	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4214	if [[ $files_for_pes = false ]]
4215	then
4216	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4217	echo "set -x" >> archive_${frelout[$i]}
4218	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4219	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4220	else
4221
4222	echo "set -x" >> archive_${frelout[$i]}
4223	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
4224	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4225	cd $tmp_data_catalog
4226	all_files=`ls -1 ${frelout[$i]}/*`
4227	cd - > /dev/null
4228	(( inode = 0 ))
4229	(( tp1 = tasks_per_node + 1 ))
4230	while (( inode < nodes ))
4231	do
4232	# echo "*** all_files = \"$all_files\" "
4233	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4234	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4235	# echo "*** tasks_per_node = \"$tasks_per_node\" "
4236	# echo "*** files = \"$files\" "
4237	# echo "*** all_files = \"$all_files\" "
4238	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4239	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4240	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
4241	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4242	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4243	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4244	(( inode = inode + 1 ))
4245	done
4246	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4247	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4248	fi
4249	elif [[ $archive_system = ut ]]
4250	then
4251	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4252	if [[ $files_for_pes = false ]]
4253	then
4254	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4255	echo "set -x" >> archive_${frelout[$i]}
4256	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4257	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4258	else
4259
4260	echo "set -x" >> archive_${frelout[$i]}
4261	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
4262	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
4263	cd $tmp_data_catalog
4264	all_files=`ls -1 ${frelout[$i]}/*`
4265	cd - > /dev/null
4266	(( inode = 0 ))
4267	(( tp1 = tasks_per_node + 1 ))
4268	while (( inode < nodes ))
4269	do
4270	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4271	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4272	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4273	(( inode = inode + 1 ))
4274	done
4275	fi
4276	elif [[ $archive_system = none ]]
4277	then
4278	printf " +++ archiving on $localhost not available!\n"
4279	fi
4280
4281	if [[ $archive_system != none ]]
4282	then
4283	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
4284	then
4285	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4286	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4287	elif [[ $localhost = nech ]]
4288	then
4289	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
4290	fi
4291	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4292	fi
4293	else
4294	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
4295	fi
4296
4297
4298	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
4299	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4300	if [[ $files_for_pes = false ]]
4301	then
4302	cat /dev/null > ${pathout[$i]}
4303	else
4304	mkdir -p ${pathout[$i]}
4305	fi
4306
4307	fi
4308
4309
4310	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
4311	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
4312	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4313	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
4314	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
4315	# GEMAESSEN ARCHIVIERUNGEN GESETZT
4316	if [[ "${actionout[$i]}" = ar ]]
4317	then
4318	if [[ $files_for_pes = false ]]
4319	then
4320	printf "\n >>> OUTPUT: ${localout[$i]} to"
4321	printf "\n ${pathout[$i]}"
4322	printf "\n File will be copied to archive-system ($archive_system) !\n"
4323	else
4324	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
4325	printf "\n ${pathout[$i]}"
4326	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
4327	fi
4328	mv ${localout[$i]} ${frelout[$i]}
4329
4330	file_saved=false
4331
4332	if [[ $archive_system = asterix ]]
4333	then
4334	do_stageout=true
4335	(( stageout_anz = 0 ))
4336	while [[ $do_stageout = true ]]
4337	do
4338	if [[ $files_for_pes = false ]]
4339	then
4340	stageout ${frelout[$i]} > STAGE_OUTPUT
4341	else
4342	stageout -t ${frelout[$i]} > STAGE_OUTPUT
4343	fi
4344	cat STAGE_OUTPUT
4345	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
4346	then
4347	file_saved=true
4348	do_stageout=false
4349	else
4350	if [[ $files_for_pes = false ]]
4351	then
4352	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
4353	else
4354	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
4355	fi
4356	(( stageout_anz = stageout_anz + 1 ))
4357	if (( stageout_anz == 10 ))
4358	then
4359	printf "\n +++ stoped after 10 unsuccessful tries!"
4360	archive_save=false
4361	do_stageout=false
4362	else
4363	printf "\n *** new try to store on archive after 15 min:"
4364	sleep 900
4365	fi
4366	fi
4367	done
4368	elif [[ $archive_system = DMF ]]
4369	then
4370	if [[ $files_for_pes = false ]]
4371	then
4372	printf "\n +++ archiving of single files impossible on $archive_system!\n"
4373	locat=DMF
4374	exit
4375	else
4376	rm -rf $ARCHIVE/${frelout[$i]}
4377	cp -r ${frelout[$i]} $ARCHIVE
4378	fi
4379	file_saved=true
4380	elif [[ $archive_system = tivoli ]]
4381	then
4382	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4383	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4384	# GELEGT WERDEN
4385	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4386	chmod g+rx $tmp_data_catalog
4387	if [[ $files_for_pes = false ]]
4388	then
4389	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4390	else
4391	mkdir $tmp_data_catalog/${frelout[$i]}
4392	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4393	fi
4394
4395	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4396	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4397	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4398	if [[ $files_for_pes = false ]]
4399	then
4400	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4401	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4402	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4403	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4404	else
4405	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4406	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4407	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4408	fi
4409
4410	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4411	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4412	file_saved=true
4413
4414	elif [[ $archive_system = ut ]]
4415	then
4416	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4417	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4418	# GELEGT WERDEN
4419	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4420	chmod g+rx $tmp_data_catalog
4421	if [[ $files_for_pes = false ]]
4422	then
4423	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4424	else
4425	mkdir $tmp_data_catalog/${frelout[$i]}
4426	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4427	fi
4428
4429	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4430	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4431	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4432	if [[ $files_for_pes = false ]]
4433	then
4434	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4435	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4436	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4437	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4438	else
4439	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4440	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4441	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4442	fi
4443
4444	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
4445	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4446	file_saved=true
4447
4448	else
4449	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
4450	archive_save=false
4451	fi
4452	if [[ $file_saved = true ]]
4453	then
4454	if [[ $files_for_pes = false ]]
4455	then
4456	cat /dev/null > ${pathout[$i]}
4457	else
4458	mkdir -p ${pathout[$i]}
4459	fi
4460	fi
4461	fi
4462
4463	# APPEND AUF LOKALER MASCHINE
4464	if [[ "${actionout[$i]}" = "a" ]]
4465	then
4466	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4467	then
4468	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}.${extout[$i]}\n"
4469	cat ${localout[$i]} >> ${pathout[$i]}.${extout[$i]}
4470	else
4471	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
4472	cat ${localout[$i]} >> ${pathout[$i]}
4473	fi
4474	fi
4475
4476	# KOPIEREN AUF LOKALER MASCHINE
4477	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
4478	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
4479	then
4480
4481	# KOPIEREN AUF EINPROZESSORMASCHINE
4482	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4483	then
4484	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
4485	if [[ $link_local_output = true ]]
4486	then
4487	printf " using ln -f\n"
4488	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4489	fi
4490	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4491	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
4492	then
4493	if [[ $link_local_output = true ]]
4494	then
4495	printf " ln failed, using cp...\n"
4496	fi
4497	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4498	fi
4499	else
4500	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
4501	if [[ $link_local_output = true ]]
4502	then
4503	printf " using ln -f\n"
4504	ln -f ${localout[$i]} ${pathout[$i]}
4505	fi
4506	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4507	if [[ ! -f "${pathout[$i]}" ]]
4508	then
4509	if [[ $link_local_output = true ]]
4510	then
4511	printf " ln failed, using cp...\n"
4512	fi
4513	cp ${localout[$i]} ${pathout[$i]}
4514	fi
4515	fi
4516
4517	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
4518	then
4519
4520	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
4521	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
4522	# WIRD DANN KOPIERT
4523	# PER MOVE UMBENANNT WERDEN
4524	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4525	if [[ $link_local_output = true ]]
4526	then
4527	printf " using ln -f\n"
4528	mkdir ${pathout[$i]}
4529	cd ${localout[$i]}
4530	for file in $(ls *)
4531	do
4532	ln -f $file ${pathout[$i]}
4533	done
4534	cd $TEMPDIR
4535	fi
4536	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4537	if [[ ! -f "${pathout[$i]}/_0000" ]]
4538	then
4539	if [[ $link_local_output = true ]]
4540	then
4541	printf " ln failed for .../_0000, using cp...\n"
4542	fi
4543	cp -r ${localout[$i]} ${pathout[$i]}
4544	fi
4545
4546	fi
4547	fi
4548	done
4549	if (( i != 0 ))
4550	then
4551	if [[ $transfer_problems = true ]]
4552	then
4553	printf "\n$striche\n *** OUTPUT-files saved"
4554	printf "\n +++ WARNING: some data transfers failed! \n"
4555	else
4556	printf "\n$striche\n *** all OUTPUT-files saved \n"
4557	fi
4558	fi
4559
4560
4561	# EVENTUELL FOLGEJOB STARTEN
4562	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4563	if [[ -f CONTINUE_RUN ]]
4564	then
4565
4566	if [[ $archive_save = true ]]
4567	then
4568
4569	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4570	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4571	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4572	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4573	# HANDEN
4574	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4575	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4576	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4577	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4578	then
4579	mc=`echo $mc \| sed 's/#/f/g'`
4580	fi
4581
4582
4583	# JOB STARTEN
4584	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4585	echo " $mc"
4586	printf "\n$striche\n"
4587	if [[ $localhost != $fromhost ]]
4588	then
4589
4590	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibms \|\| $localhost = lcflow \|\| $localhost = lckyu* ]]
4591	then
4592	echo "*** ssh will be used to initiate restart-runs!"
4593	echo " return_addres=\"$return_addres\" "
4594	echo " return_username=\"$return_username\" "
4595	if [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4596	then
4597	if [[ $localhost = ibmh ]]
4598	then
4599	ssh $SSH_PORTOPT $usern@136.172.40.15 "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4600	else
4601	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4602	fi
4603	else
4604	if [[ $localhost = ibmkisti ]]
4605	then
4606	ssh $SSH_PORTOPT $usern@gaiad "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4607	else
4608	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4609	fi
4610	fi
4611	else
4612	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4613	locat=restart; exit
4614	fi
4615
4616	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4617	# DER AKTUELLE JOB ENDET
4618	if [[ $queue = special1q ]]
4619	then
4620	sleep 120
4621	else
4622	sleep 30
4623	fi
4624
4625	else
4626
4627	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4628	# RUFEN WERDEN, AUSSER AUF lcfimm
4629	cd $LOCAL_PWD
4630	if [[ $localhost = lcfimm ]]
4631	then
4632	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4633	elif [[ $localhost = lckyuh ]]
4634	then
4635	printf "\n +++ WARNING: no restart mechanism available for host \"$localhost\" "
4636	printf "\n please restart job manually using command:\n"
4637	printf "\n \"$mc\" "
4638	else
4639	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4640	fi
4641	cd - > /dev/null
4642	fi
4643	if [[ $localhost = lckyuh ]]
4644	then
4645	printf "\n$striche\n *** restart-run to be initiated manually\n"
4646	else
4647	printf "\n$striche\n *** restart-run initiated \n"
4648	fi
4649
4650
4651	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4652	# GEHOLT WORDEN SIND, LOESCHEN
4653	(( i = 0 ))
4654	while (( i < iin ))
4655	do
4656	(( i = i + 1 ))
4657	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4658	then
4659	rm -r $tmp_data_catalog/${frelin[$i]}
4660	fi
4661	done
4662
4663	else
4664
4665	printf "\n +++ no restart-run possible, since errors occured"
4666	printf "\n during the archive process"
4667	fi
4668
4669	fi
4670
4671
4672
4673	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4674	if [[ "$email_notification" != "none" ]]
4675	then
4676
4677	if [[ $localhost != $fromhost ]]
4678	then
4679	if [[ -f CONTINUE_RUN ]]
4680	then
4681	echo "PALM restart run necessary" > email_text
4682	echo "description header of actual run:" >> email_text
4683	cat CONTINUE_RUN >> email_text
4684	echo "mrun-command to restart:" >> email_text
4685	echo "$mc" >> email_text
4686	else
4687	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4688	fi
4689	mail $email_notification < email_text
4690	printf "\n *** email notification sent to \"$email_notification\" "
4691	fi
4692	fi
4693
4694
4695
4696	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4697	cd $HOME
4698	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4699
4700	else
4701
4702
4703	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4704	# CHENDE AKTIONEN DURCHGEFUEHRT
4705
4706	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4707	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
4708	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4709	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4710	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4711	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4712	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4713	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4714	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4715	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4716	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4717	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4718	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4719	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4720	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4721	if [[ $use_openmp = true ]]
4722	then
4723	mrun_com=${mrun_com}" -O $threads_per_task"
4724	fi
4725	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4726	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
4727	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4728	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4729	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4730	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4731	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4732	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4733	[[ "$check_namelist_files" = false ]] && mrun_com=${mrun_com}" -z"
4734	[[ "$combine_plot_fields" = false ]] && mrun_com=${mrun_com}" -Z"
4735	[[ "$max_par_io_str" != "" ]] && mrun_com=${mrun_com}" -w $max_par_io_str"
4736	if [[ $do_remote = true ]]
4737	then
4738	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4739	fi
4740
4741
4742	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4743	jobfile=jobfile.$RANDOM
4744
4745
4746	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4747	echo "mkdir $TEMPDIR" >> $jobfile
4748	echo "cd $TEMPDIR" >> $jobfile
4749
4750
4751	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4752	if [[ $do_trace = true ]]
4753	then
4754	echo "set -x" >> $jobfile
4755	else
4756	echo "set +vx" >> $jobfile
4757	fi
4758
4759
4760	# initialize the environment and load modules
4761	if [[ "$init_cmds" != "" ]]
4762	then
4763	echo "$init_cmds" >> $jobfile
4764	fi
4765	if [[ "$module_calls" != "" ]]
4766	then
4767	echo "$module_calls" >> $jobfile
4768	fi
4769
4770
4771	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4772	# DATEI FUER DEN JOB
4773	if [[ $( echo $host \| cut -c1-5 ) = lcsgi \|\| $host = ibmkisti ]]
4774	then
4775
4776	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4777	# KOPIEREN
4778	if [[ $restart_run != true ]]
4779	then
4780	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4781	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4782	fi
4783
4784	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4785	# (BEI JOBS AUF LOKALEM RECHNER REICHT CP)
4786	echo "set -x" >> $jobfile
4787	if [[ $host = $localhost ]]
4788	then
4789	echo "cp -r $working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4790	else
4791	if [[ $host != ibmkisti ]]
4792	then
4793	echo "scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4794	else
4795	# on KISTI's IBM firewall is only opened on interactive node
4796	echo "localdir=\`pwd\`" >> $jobfile
4797	echo "ssh $SSH_PORTOPT $remote_username@gaiad \"cd \$localdir; scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
4798	fi
4799	fi
4800	echo "export SOURCES_COMPLETE=true" >> $jobfile
4801
4802	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4803	# ARBEITSVERZEICHNIS VERSCHIEBEN
4804	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4805	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4806	echo "execute_mrun=true" >> $jobfile
4807	echo " " >> $jobfile
4808
4809	else
4810
4811	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4812	# SOWIE GEGEBENENFALLS DES MAKEFILES
4813	if [[ $do_compile = true ]]
4814	then
4815
4816	source_catalog=SOURCES_FOR_RUN_$fname
4817
4818	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4819	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4820	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4821	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4822	echo "export SOURCES_COMPLETE=true" >> $jobfile
4823	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4824
4825	for filename in $source_list
4826	do
4827	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4828	echo "cat > $filename << \"%END%\"" >> $jobfile
4829	cat $source_catalog/$filename >> $jobfile
4830	echo " " >> $jobfile
4831	echo "%END%" >> $jobfile
4832	echo " " >> $jobfile
4833	done
4834
4835	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4836	echo "cat > Makefile << \"%END%\"" >> $jobfile
4837	cat $source_catalog/Makefile >> $jobfile
4838	echo " " >> $jobfile
4839	echo "%END%" >> $jobfile
4840	echo " " >> $jobfile
4841
4842	echo "cd - > /dev/null" >> $jobfile
4843
4844	fi
4845
4846
4847	# ABSPEICHERN DER KONFIGURATIONSDATEI
4848	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4849	# Lines with #$ coming from the svn keyword substitution are
4850	# removed from the config file in order to avoid problems
4851	# with the SGE batch system
4852	echo "cat > $config_file << \"%END%\"" >> $jobfile
4853	if [[ $host = lckyuh ]]
4854	then
4855	# no cross compiler on compute node
4856	sed 's/frtpx/frt/g' $config_file >> $jobfile
4857	else
4858	sed 's/#$.*//g' $config_file >> $jobfile
4859	fi
4860	echo "%END%" >> $jobfile
4861	echo " " >> $jobfile
4862
4863
4864	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
4865	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4866	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
4867	if [[ $host = lckyuh ]]
4868	then
4869	sed 's/\/bin\/ksh/\/bin\/bash/g' ${PALM_BIN}/$mrun_script_name >> $jobfile
4870	else
4871	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
4872	fi
4873	echo "%END%" >> $jobfile
4874	echo "chmod u+x $mrun_script_name" >> $jobfile
4875	echo "execute_mrun=true" >> $jobfile
4876	echo " " >> $jobfile
4877
4878	fi
4879
4880
4881	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
4882	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
4883	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
4884	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
4885	if [[ $do_remote = true ]]
4886	then
4887	(( i = 0 ))
4888	while (( i < iin ))
4889	do
4890	(( i = i + 1 ))
4891	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
4892	if [[ "${transin[$i]}" = job ]]
4893	then
4894	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
4895	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
4896	echo " " >> $jobfile
4897	echo "%END%" >> $jobfile
4898	else
4899	echo "batch_scp $PORTOPT -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
4900	fi
4901
4902	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
4903	echo "if [[ \$? = 1 ]]" >> $jobfile
4904	echo "then" >> $jobfile
4905	echo " echo \" \" " >> $jobfile
4906	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
4907	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
4908	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
4909	echo " execute_mrun=false" >> $jobfile
4910	echo "fi" >> $jobfile
4911	done
4912	fi
4913
4914	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
4915	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
4916	echo "LOCAL_PWD=$working_directory" >> $jobfile
4917	echo "export LOCAL_PWD" >> $jobfile
4918
4919	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
4920	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
4921	echo "export LOCAL_MRUN_PATH" >> $jobfile
4922
4923	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
4924	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
4925	then
4926	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
4927	elif [[ $host = lcflow \|\| $localhost = lcflow ]]
4928	then
4929	echo "export PALM_BIN=$PALM_BIN" \| sed -e 's:'$HOME':$HOME:' >> $jobfile
4930	echo "export PATH=\$PATH:\$PALM_BIN" >> $jobfile
4931	fi
4932
4933	# MRUN AUF ZIELRECHNER AUFRUFEN (queue is workaround for ibmkisti)
4934	echo "set -x" >> $jobfile
4935	echo "queue=$queue" >> $jobfile
4936	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
4937	echo 'ls -al; echo `pwd`' >> $jobfile
4938	echo "cd \$HOME" >> $jobfile
4939	echo "rm -rf $TEMPDIR" >> $jobfile
4940
4941
4942
4943
4944	# JOB PER SUBJOB STARTEN
4945	if [[ $silent = false ]]
4946	then
4947	printf "\n "
4948	else
4949	printf "\n\n"
4950	fi
4951
4952	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $PORTOPT $jobfile
4953	rm -rf $jobfile
4954
4955
4956	fi # ENDE REMOTE-TEIL
4957
4958
4959
4960	# ENDE DER PROZEDUR

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