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source: palm/trunk/SCRIPTS/mrun @ 1121

Last change on this file since 1121 was 1121, checked in by raasch, 12 years ago
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1	#!/bin/ksh
2
3	# mrun - script for running PALM jobs
4
5	#--------------------------------------------------------------------------------#
6	# This file is part of PALM.
7	#
8	# PALM is free software: you can redistribute it and/or modify it under the terms
9	# of the GNU General Public License as published by the Free Software Foundation,
10	# either version 3 of the License, or (at your option) any later version.
11	#
12	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
13	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
14	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
15	#
16	# You should have received a copy of the GNU General Public License along with
17	# PALM. If not, see <http://www.gnu.org/licenses/>.
18	#
19	# Copyright 1997-2012 Leibniz University Hannover
20	#--------------------------------------------------------------------------------#
21	#
22	# Current revisions:
23	# ------------------
24	#
25	#
26	# Former revisions:
27	# -----------------
28	# $Id: mrun 1121 2013-04-08 07:57:21Z raasch $
29	#
30	# 1119 2013-04-05 15:11:19Z raasch
31	# Bugfix for setting -T option for subjob
32	#
33	# 1108 2013-03-05 07:03:32Z raasch
34	# bugfix for coupled runs on lckyut/lckyuh
35	#
36	# 1106 2013-03-04 05:31:38Z raasch
37	# --stdin argument for mpiexec on lckyuh
38	# -y and -Y settings output to header
39	#
40	# 1103 2013-02-20 02:15:53Z raasch
41	# default script runs again under ksh, because of unsolved problems with read
42	# from stdin: when bash script is called from a ksh, message "read error: 0:
43	# Resource temporarily unavailable" appears and script does not stop,
44	# further bash compatibility adjustments,
45	# shebang line replaced by /bin/bash when running jobs on lckyuh; no restarts
46	# on lckyuh, but mrun does not terminate and issues a warning instead
47	#
48	# 1101 2013-02-17 10:20:21Z raasch
49	# script now running under bash instead of ksh, which required small adjustments
50	# (output formatting with printf instead "typeset -L/-R", print replaced by echo,
51	# read from stdin),
52	# cross compilername on lckyuh compute nodes replaced by real compiler name
53	#
54	# 1099 2013-02-10 01:47:43Z raasch
55	# adjustments for Kyushu-University computing center (lckyuh - hayaka)
56	# and for Forwind cluster (lcflow)
57	# small further adjustments for lckyut
58	#
59	# 1094 2013-02-03 01:52:12Z raasch
60	# explicit ssh/scp port can be set in config file with environment variable
61	# scp_port. This port is handled to all ssh/scp/batch_scp calls.
62	# decalpha parts (yonsei) removed
63	#
64	# 2013-02-02 07:06:13Z raasch
65	# adjustments for Kyushu-University computing center (lckyut - tatara)
66	#
67	# 1083 2013-01-04 10:22:09Z maronga
68	# bugfix in parameter file check (read %cpp_options was missing)
69	#
70	# 1069 2012-11-28 16:18:43Z maronga
71	# bugfix: coupling mode was always set to mpi2, typos removed
72	#
73	# 1058 2012-11-21 07:00:35Z raasch
74	# Intel inspector (inspxe) is given the number of PEs instead of the number of
75	# nodes
76	#
77	# 1046 2012-11-09 14:38:45Z maronga
78	# code put under GPL (PALM 3.9)
79	#
80	# 21/03/94 - Siggi - first version finished
81	# 03/03/94 - Siggi - script development started
82	#
83	#--------------------------------------------------------------------------------#
84	# mrun - script for running PALM jobs
85	#--------------------------------------------------------------------------------#
86
87
88
89	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
90
91	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
92	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
93	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
94
95	AddFilenames=""
96	additional_conditions=""
97	add_source_path=""
98	afname=""
99	archive_save=true
100	archive_system=none
101	check_namelist_files=true
102	combine_plot_fields=true
103	compiler_name=""
104	cond1=""
105	cond2=""
106	config_file=.mrun.config
107	coupled_dist=""
108	coupled_mode="mpi1"
109	cpp_opts=""
110	cpp_options=""
111	cpumax=0
112	cpurest=0
113	delete_temporary_catalog=true
114	do_batch=false
115	do_compile=true
116	do_remote=false
117	do_stagein=true
118	do_stageout=true
119	do_trace=false
120	email_notification="none"
121	exclude=""
122	executable=""
123	execution_error=false
124	fimm=false
125	fname=test
126	fromhost=""
127	global_revision=""
128	group_number=none
129	host=""
130	host_file=""
131	hp=""
132	ignore_archive_error=false
133	input_list=""
134	interpreted_config_file=""
135	job_catalog="~/job_queue"
136	job_on_file=""
137	keep_data_from_previous_run=false
138	link_local_input=false
139	link_local_output=false
140	localhost_realname=$(hostname)
141	local_compile=false
142	local_dvrserver_running=.FALSE.
143	locat=normal
144	mainprog=""
145	makefile=""
146	max_par_io_str=""
147	mc=$0
148	while [[ $(echo $mc \| grep -c "/") != 0 ]]
149	do
150	mc=`echo $mc \| cut -f2- -d"/"`
151	done
152	module_calls=""
153	mrun_script_name=$mc
154	netcdf_inc=""
155	netcdf_lib=""
156	netcdf_support=false
157	node_usage=default
158	numprocs=""
159	numprocs_atmos=0
160	numprocs_ocean=0
161	OOPT=""
162	openmp=false
163	output_list=""
164	package_list=""
165	punkte="..........................................................."
166	queue=none
167	read_from_config=""
168	restart_run=false
169	if [[ `hostname` = rte10 ]]
170	then
171	return_addres=133.5.185.60
172	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
173	elif [[ `hostname` = climate0 ]]
174	then
175	return_addres=165.132.26.68
176	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
177	elif [[ `hostname` = urban00 ]]
178	then
179	return_addres=147.46.30.151
180	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
181	else
182	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
183	fi
184	return_password=""
185	return_username=$LOGNAME
186	remotecall=false
187	remote_username=""
188	run_coupled_model=false
189	run_mode=""
190	scirocco=false
191	store_on_archive_system=false
192	striche=" ----------------------------------------------------------------------------"
193	silent=false
194	source_list=""
195	source_path=SOURCE
196	tasks_per_node=""
197	threads_per_task=1
198	tmpcreate=false
199	tmp_data_catalog=""
200	transfer_problems=false
201	usern=$LOGNAME
202	use_openmp=false
203	version="MRUN 2.0 Rev$Rev: 1121 $"
204	working_directory=`pwd`
205	TOPT=""
206	XOPT=""
207	zeit=$( date \| cut -c 12-19 )
208
209	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
210	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek last_char maxcycle minuten nodes pes sekunden tp1
211
212
213
214
215	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
216	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
217
218	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
219	# EXPORTIERT WERDEN
220	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
221	export group_number input_list memory numprocs output_list queue run_mode
222
223
224
225	# FEHLERBEHANDLUNG
226	# BEI EXIT:
227	trap 'rm -rf $working_directory/tmp_mrun
228	if [[ $locat != localhost ]]
229	then
230	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
231	# then
232	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
233	#MRUN-calls on $localhost
234	#
235	#date and time user localhost remotehost termination mrun-command
236	#--------------------------------------------------------------------------------------------------------------------
237	#%STATEND%
238	# chmod 666 ${mrun_path}/statistik/mrun_statistik
239	# fi
240	#
241	# # EINTRAG IN DIE STATISTIK-DATEI
242	# string1=`date` #-L35
243	# string2=$usern #-L12
244	# string3=$localhost_realname #-L12
245	# string4=$host #-L12
246	# string5=$locat #-L12
247	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
248	# then
249	# if [[ $do_batch = true ]]
250	# then
251	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
252	# else
253	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
254	# fi
255	# fi
256	echo " " > /dev/null
257	fi
258
259	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
260	then
261
262	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
263	(( i = 0 ))
264	while (( i < iec ))
265	do
266	(( i = i + 1 ))
267	printf "\n *** Execution of ERROR-command:\n"
268	printf " >>> ${err_command[$i]}\n"
269	eval ${err_command[$i]}
270	done
271	if [[ -n $interpreted_config_file ]]
272	then
273	rm -rf $interpreted_config_file
274	fi
275	if [[ -n .mrun_environment ]]
276	then
277	rm -rf .mrun_environment
278	fi
279	if [[ $tmpcreate = true ]]
280	then
281	printf "\n *** Contents of \"$TEMPDIR\":\n"
282	ls -al; cd
283	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
284	fi
285	if [[ "$dvrserver_id" != "" ]]
286	then
287	echo "+++ killing dvrserver_id=$dvrserver_id"
288	kill $dvrserver_id
289	fi
290	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
291	then
292	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
293	fi
294	printf "\n\n+++ MRUN killed \n\n"
295	elif [[ $locat != control_c ]]
296	then
297	printf "\n\n --> all actions finished\n\n"
298	printf " Bye, bye $usern !!\n\n"
299	fi' exit
300
301
302	# BEI TERMINAL-BREAK:
303	trap 'rm -rf $working_directory/tmp_mrun
304	rm -rf $working_directory/tmp_check_namelist_files
305	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
306	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
307	then
308	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
309	fi
310	if [[ "$dvrserver_id" != "" ]]
311	then
312	echo "+++ killing dvrserver_id=$dvrserver_id"
313	kill $dvrserver_id
314	fi
315	printf "\n+++ MRUN killed by \"^C\" \n\n"
316	locat=control_c
317	exit
318	' 2
319
320
321	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
322	# BEEN SET
323	if [[ "$PALM_BIN" = "" ]]
324	then
325	printf "\n +++ environment variable PALM_BIN has not been set"
326	printf "\n please set it to the directory where the PALM scripts are located"
327	locat=palm_bin; exit
328	fi
329	export PATH=$PALM_BIN:$PATH
330
331
332
333	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
334	# FUER FOLGEJOBS BENOETIGT WIRD
335	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vw:xX:yY:zZ option
336	do
337	case $option in
338	(a) afname=$OPTARG;;
339	(A) store_on_archive_system=true; mc="$mc -A";;
340	(b) do_batch=true; mc="$mc -b";;
341	(B) delete_temporary_catalog=false; mc="$mc -B";;
342	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
343	(C) restart_run=true; mc="$mc -C";;
344	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
345	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
346	(F) job_on_file="-D"; mc="$mc -F";;
347	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
348	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
349	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
350	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
351	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
352	(I) ignore_archive_error=true; mc="$mc -I";;
353	(k) keep_data_from_previous_run=true; mc="$mc -k";;
354	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
355	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
356	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
357	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
358	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
359	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
360	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
361	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
362	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
363	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
364	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
365	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
366	(S) read_from_config=false; mc="$mc -S";;
367	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
368	(T) mrun_tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
369	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
370	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
371	(v) silent=true; mc="$mc -v";;
372	(w) max_par_io_str=$OPTARG; mc="$mc -w$OPTARG";;
373	(x) do_trace=true;set -x; mc="$mc -x";;
374	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
375	(y) ocean_file_appendix=true; mc="$mc -y";;
376	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
377	(z) check_namelist_files=false; mc="$mc -z";;
378	(Z) combine_plot_fields=false; mc="$mc -Z";;
379	(\?) printf "\n +++ unknown option $OPTARG \n"
380	printf "\n --> type \"$0 ?\" for available options \n"
381	locat=parameter;exit;;
382	esac
383	done
384
385
386	# EVTL. POSITIONSPARAMETER EINLESEN
387	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
388	(( to_shift = $OPTIND - 1 ))
389	shift $to_shift
390
391	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
392	if [[ "$1" = "?" ]]
393	then
394	(printf "\n *** mrun can be called as follows:\n"
395	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. -z -Z <modus> \n"
396	printf "\n Description of available options:\n"
397	printf "\n Option Description Default-Value"
398	printf "\n -a base name of input files equiv. -d"
399	printf "\n -A archiving when using file-attribute fl"
400	printf "\n -b batch-job on local machine ---"
401	printf "\n -B do not delete temporary directory at end ---"
402	printf "\n -c configuration file .mrun.config"
403	printf "\n -d base name of files attached to program test"
404	printf "\n -D preprocessor(cpp)-directives \"\" "
405	printf "\n -F create remote job file only ---"
406	printf "\n -h execution host $localhost_realname"
407	printf "\n -i INPUT control list \"\" "
408	printf "\n -I archiving errors of previous batch-jobs"
409	printf "\n will be ignored"
410	printf "\n -k keep data from previous run"
411	printf "\n -K additional conditions for controling"
412	printf "\n usage of conditional code and"
413	printf "\n env-variables in configuration file \"\" "
414	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
415	printf "\n -M Makefile name Makefile"
416	printf "\n -n node usage (shared/not_shared) depending on -h"
417	printf "\n -o OUTPUT control list \"\" "
418	printf "\n -O use OpenMP ---"
419	printf "\n -p software package list \"\" "
420	printf "\n -q queue \"$queue\" "
421	printf "\n -r run control list (combines -i -o) \"\" "
422	printf "\n -s filenames of routines to be compiled \"\" "
423	printf "\n must end with .f, .f90, .F, or .c !"
424	printf "\n use \"..\" for more than one file and wildcards"
425	printf "\n -s LM compiles all locally modified files"
426	printf "\n -S config file interpreted by shellscript ---"
427	printf "\n -t allowed cpu-time in seconds (batch) 0"
428	printf "\n -T tasks per node depending on -h"
429	printf "\n -u username on remote machine \"\" "
430	printf "\n -v no prompt for confirmation ---"
431	printf "\n -w maximum parallel io streams as given by -X"
432	printf "\n -x tracing of mrun for debug purposes ---"
433	printf "\n -X # of processors (on parallel machines) 1"
434	printf "\n -y add appendix \"_O\" to all local output"
435	printf "\n files (ocean precursor runs followed by"
436	printf "\n coupled atmosphere-ocean runs) ---"
437	printf "\n -Y run coupled model, \"#1 #2\" with"
438	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
439	printf "\n -z disable a priori parameter file check ---"
440	printf "\n -Z skip combine_plot_fields at the end of "
441	printf "\n the simulation ---"
442	printf "\n "
443	printf "\n Possible values of positional parameter <modus>:"
444	printf "\n \"?\" - this outline \n\n") \| more
445	exit
446	elif [[ "$1" != "" ]]
447	then
448	printf "\n +++ positional parameter $1 unknown \n"
449	locat=parameter; exit
450	fi
451
452
453
454	# KURZE STARTMELDUNG
455	printf "\n*** $version "
456	printf "\n will be executed. Please wait ..."
457
458
459
460	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
461	if [[ ! -f $config_file ]]
462	then
463	printf "\n\n +++ configuration file: "
464	printf "\n $config_file"
465	printf "\n does not exist"
466	locat=connect; exit
467	fi
468
469
470	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
471	line=""
472	grep "%host_identifier" $config_file > tmp_mrun
473	while read line
474	do
475	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
476	then
477	HOSTNAME=`echo $line \| cut -d" " -s -f2`
478	host_identifier=`echo $line \| cut -d" " -s -f3`
479	if [[ $localhost_realname = $HOSTNAME ]]
480	then
481	localhost=$host_identifier
482	break
483	fi
484	fi
485	done < tmp_mrun
486
487	if [[ "$localhost" = "" ]]
488	then
489	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
490	printf "\n for local host \"$localhost_realname\"."
491	printf "\n Please add line"
492	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
493	printf "\n to the configuration file."
494	locat=localhost; exit
495	fi
496
497
498	# HOSTSPEZIFISCHE VARIABLEN SETZEN
499	case $localhost_realname in
500	(r1\|r2\|h01\|b01) archive_system=tivoli;;
501	(cs*) archive_system=ut;;
502	(fimm.bccs.uib.no) fimm=true;;
503	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
504	(scirocco) scirocco=true;;
505	esac
506
507
508
509	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
510	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
511	[[ "$afname" = "" ]] && afname=$fname
512
513
514	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
515	if [[ "$run_mode" != "" ]]
516	then
517	input_list="$input_list $run_mode"
518	output_list="$output_list $run_mode"
519	fi
520
521
522	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
523	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
524	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
525	# STARTET)
526	if [[ "$fromhost" = "" ]]
527	then
528	fromhost=$localhost
529	fi
530
531
532	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
533	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
534	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
535	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
536	if [[ -n $host && "$host" != $localhost ]]
537	then
538	do_batch=true
539	do_remote=true
540	case $host in
541	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|nech\|necriam\|lcflow\|lckyoto\|lcsgib\|lcsgih\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
542	(*) printf "\n"
543	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
544	printf "\n is not available"
545	locat=nqs; (( iec = 0 )); exit;;
546	esac
547	else
548	host=$localhost
549	fi
550
551
552	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
553	if [[ -n $additional_conditions ]]
554	then
555	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
556	cond1=`echo $additional_conditions \| cut -d" " -f1`
557	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
558	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
559	if [[ -n $dummy ]]
560	then
561	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
562	locat=options; exit
563	fi
564	block=_$cond1
565	[[ -n $cond2 ]] && block=${block}_$cond2
566	fi
567
568
569	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
570	if [[ $run_coupled_model = true ]]
571	then
572
573	if [[ -n $coupled_dist ]]
574	then
575
576	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
577	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
578
579	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
580	then
581
582	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
583	printf "\n PEs (total) : $numprocs"
584	printf "\n PEs (atmosphere): $numprocs_atmos"
585	printf "\n PEs (ocean) : $numprocs_ocean"
586	locat=coupling; exit
587
588	fi
589
590	else
591
592	(( numprocs_ocean = $numprocs / 2 ))
593	(( numprocs_atmos = $numprocs / 2 ))
594
595	fi
596	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
597
598	# GET coupled_mode FROM THE CONFIG FILE
599	line=""
600	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
601	while read line
602	do
603	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && $(echo $line \| cut -d" " -s -f4) = $cond1 && $(echo $line \| cut -d" " -s -f4) = $cond2 ]]
604	then
605	coupled_mode="mpi2"
606	fi
607	done < tmp_mrun
608
609	fi
610
611
612	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
613	# ARCHIVIERUNG FEHLGESCHLAGEN IST
614	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
615	then
616	if [[ $ignore_archive_error = false ]]
617	then
618	printf "\n +++ data archiving of previous run failed"
619	printf "\n see directory \~/job_queue on remote machine"
620	locat=archive; exit
621	else
622	printf "\n +++ warning: data archiving in a previous run failed"
623	printf "\n MRUN continues, trying to get backup copy"
624	fi
625	fi
626
627
628	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
629	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
630	mrun_memory=$memory
631	mrun_group_number=$group_number
632	mrun_cpumax=$cpumax
633	mrun_numprocs=$numprocs
634
635
636	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
637	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
638	if [[ "$read_from_config" = false ]]
639	then
640
641	[[ $silent = false ]] && printf "\n Reading the configuration file... "
642	while read zeile
643	do
644	[[ $silent = false ]] && printf "."
645
646
647	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
648	# ERSETZEN
649	eval zeile=\"$zeile\"
650
651
652	# INTERPRETATION DER ZEILE
653	if [[ "$(echo $zeile)" = "" ]]
654	then
655	# LEERZEILE, KEINE AKTION
656	continue
657
658	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
659	then
660
661	# ZEILE IST KOMMENTARZEILE
662	true
663
664	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
665	then
666
667	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
668	zeile=$(echo $zeile \| cut -c2-)
669	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
670	var=`echo $zeile \| cut -d" " -f1`
671	value=`echo $zeile \| cut -d" " -s -f2`
672	for_host=`echo $zeile \| cut -d" " -s -f3`
673	for_cond1=`echo $zeile \| cut -d" " -s -f4`
674	for_cond2=`echo $zeile \| cut -d" " -s -f5`
675
676	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
677	then
678
679	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
680	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
681	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
682
683
684	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
685	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
686	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
687	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
688	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
689	# KONFIGURATIONSDATEI
690	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
691	then
692	eval $var=\$value
693
694	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
695	if [[ $do_trace = true ]]
696	then
697	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
698	fi
699	fi
700
701	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
702	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
703	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
704	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
705	if [[ $var = host ]]
706	then
707	if [[ -n $host && "$host" != $localhost ]]
708	then
709	do_batch=true
710	do_remote=true
711	case $host in
712	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lcflow\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
713	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
714	printf "\n is not available"
715	locat=nqs; exit;;
716	esac
717	else
718	host=$localhost
719	fi
720	fi
721
722	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
723	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
724	# DEN PROGRAMMEN BENOETIGT WERDEN
725	export $var
726	fi
727
728
729
730
731	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
732	then
733
734	# ZEILE DEFINIERT ERROR-KOMMANDO
735	(( iec = iec + 1 ))
736	zeile=$(echo $zeile \| cut -c4-)
737	err_command[$iec]="$zeile"
738
739	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
740	then
741
742	# ZEILE DEFINIERT INPUT-KOMMANDO
743	(( iic = iic + 1 ))
744	zeile=$(echo $zeile \| cut -c4-)
745	in_command[$iic]="$zeile"
746
747	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
748	then
749
750	# ZEILE DEFINIERT OUTPUT-KOMMANDO
751	(( ioc = ioc + 1 ))
752	zeile=$(echo $zeile \| cut -c4-)
753	out_command[$ioc]="$zeile"
754
755	else
756
757	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
758	# s2a: in/out - Feld
759	# s2b: loc - Feld (optional)
760	# s2c: tr/ar - Feld (optional)
761	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
762	s1=`echo $zeile \| cut -d" " -f1`
763	s2=`echo $zeile \| cut -d" " -s -f2`
764	s2a=$(echo $s2 \| cut -d":" -f1)
765	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
766	then
767	s2b=""
768	s2c=""
769	else
770	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
771	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
772	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
773	fi
774	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
775	s3=`echo $zeile \| cut -d" " -f3`
776	s4=`echo $zeile \| cut -d" " -s -f4`
777	s5=`echo $zeile \| cut -d" " -s -f5`
778	s6=`echo $zeile \| cut -d" " -s -f6`
779
780
781	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
782	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
783	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
784	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
785	# HANDEN SEIN MUSS (D.H. s2b = loc)
786	IFSALT="$IFS"; IFS="$IFS:"
787	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
788	then
789	found=false
790	for actual in $input_list
791	do
792	for formal in $s3
793	do
794	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
795	done
796	done
797	if [[ $found = true ]]
798	then
799	(( iin = iin + 1 ))
800	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
801	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
802	extin[$iin]=$s6
803	fi
804	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
805	then
806	found=false
807	for actual in $output_list
808	do
809	for formal in $s3
810	do
811	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
812	done
813	done
814	if [[ $found = true ]]
815	then
816	(( iout = iout + 1 ))
817	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
818	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
819	fi
820	elif [[ "$s2a" != in && "$s2a" != out ]]
821	then
822	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
823	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
824	locat=connect; exit
825	fi
826	IFS="$IFSALT"
827	fi
828	done < $config_file
829
830	else
831
832
833	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
834	[[ $silent = false ]] && printf "..."
835	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
836	export interpreted_config_file=.icf.$RANDOM
837
838
839
840	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
841	# VERFUEGUNG STELLEN
842	cat > .mrun_environment << %%END%%
843	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
844	config_file = '$config_file', do_remote = '$do_remote',
845	do_trace = '$do_trace', host = '$host',
846	input_list = '$input_list', icf = '$interpreted_config_file',
847	localhost = '$localhost', output_list = '$output_list' /
848
849	%%END%%
850
851	if [[ $localhost_realname = "sx-fep" ]]
852	then
853	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
854	else
855
856	if [[ "$host" != $localhost ]]
857	then
858
859	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
860	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
861	if [[ $? != 0 ]]
862	then
863	printf "\n\n +++ no interpret_config found"
864	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
865	locat=interpret_config; exit
866	fi
867	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
868	$interpret_config_executable
869
870	else
871
872	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
873	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
874	then
875	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
876	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
877	locat=interpret_config; exit
878	else
879	interpret_config${block}.x
880	fi
881
882	fi
883	fi
884	rm .mrun_environment
885
886
887	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
888	chmod u+x $interpreted_config_file
889	export PATH=$PATH:.
890	. $interpreted_config_file
891	rm $interpreted_config_file
892
893	fi
894
895
896	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
897	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
898	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
899	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
900	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
901	[[ "$max_par_io_str" != "" ]] && maximum_parallel_io_streams=$max_par_io_str
902	[[ "$mrun_tasks_per_node" != "" ]] && tasks_per_node=$mrun_tasks_per_node
903
904
905	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
906	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
907	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
908	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
909	if [[ "$SOURCES_COMPLETE" = "" ]]
910	then
911
912	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
913	# VEREINBART WURDE
914	source_path=""
915	line=""
916	grep "%source_path" $config_file > tmp_mrun
917	while read line
918	do
919	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
920	then
921	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
922	then
923	global_source_path=`echo $line \| cut -d" " -f2`
924	fi
925	fi
926	done < tmp_mrun
927
928	line=""
929	found=false
930	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
931	while read line
932	do
933	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
934	then
935	if [[ $found = true ]]
936	then
937	printf "\n\n +++ more than one source path found in configuration file"
938	printf "\n for local host \"$localhost\" "
939	locat=source_path; exit
940	fi
941	source_path=`echo $line \| cut -d" " -f2`
942	found=true
943	fi
944	done < tmp_mrun
945	rm tmp_mrun
946
947	if [[ "$source_path" = "" ]]
948	then
949	if [[ "$global_source_path" != "" ]]
950	then
951	source_path=$global_source_path
952	else
953	printf "\n\n +++ no source path found in configuration file"
954	printf "\n for local host \"$localhost\" "
955	locat=source_path; exit
956	fi
957	fi
958	eval source_path=$source_path
959
960	if [[ ! -d $source_path ]]
961	then
962	printf "\n\n +++ source path \"$source_path\" on local host"
963	printf "\n \"$localhost\" does not exist"
964	locat=source_path; exit
965	fi
966
967	fi
968
969
970	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
971	# DURCH OPTION -G MITGETEILT)
972	if [[ "$global_revision" = "" && $host != "ibmkisti" ]]
973	then
974	global_revision=`svnversion $source_path 2>/dev/null`
975	global_revision="Rev: $global_revision"
976	fi
977
978
979	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
980	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
981	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
982	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
983	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
984	if [[ -n $host && "$host" != $localhost ]]
985	then
986	do_batch=true
987	do_remote=true
988	case $host in
989	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lcflow\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
990	(*) printf "\n"
991	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
992	printf "\n is not available"
993	locat=nqs; (( iec = 0 )); exit;;
994	esac
995	else
996	host=$localhost
997	fi
998
999
1000	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
1001	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1002	then
1003
1004	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
1005	if [[ ! -n $numprocs ]]
1006	then
1007	printf "\n"
1008	printf "\n +++ option \"-K parallel\" requires additional specification"
1009	printf "\n of the number of processors to be used by"
1010	printf "\n mrun-option \"-X\" or by environment-variable"
1011	printf "\n \"numprocs\" in the configuration file"
1012	locat=numprocs; (( iec = 0 )); exit
1013	fi
1014
1015	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
1016	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
1017	# GESAMTPROZESSORANZAHL IST
1018	if [[ "$tasks_per_node" = "" && $host != lcflow && $host != lcxt5m ]]
1019	then
1020	printf "\n"
1021	printf "\n +++ option \"-T\" (tasks per node) is missing"
1022	printf "\n set -T option or define tasks_per_node in the config file"
1023	locat=tasks_per_node; (( iec = 0 )); exit
1024	fi
1025	if [[ $host != lcflow && $host != lcxt5m ]]
1026	then
1027	(( ival = $tasks_per_node ))
1028	(( pes = numprocs ))
1029	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1030	# then
1031	# (( pes = pes - 1 ))
1032	# fi
1033	(( ii = pes / ival ))
1034	if (( pes - ii * ival > 0 ))
1035	then
1036	printf "\n"
1037	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1038	printf "\n divisor of the total number of processors (option \"-X\")"
1039	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1040	locat=tasks_per_node; (( iec = 0 )); exit
1041	fi
1042	fi
1043
1044
1045	# IBMY HAT NUR EINEN KNOTEN
1046	if [[ $host = ibmy ]]
1047	then
1048	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1049	then
1050	printf "\n"
1051	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1052	printf "\n total number of processors (option \"-X\")"
1053	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1054	locat=tasks_per_node; (( iec = 0 )); exit
1055	fi
1056	fi
1057
1058
1059	# SETTINGS FOR SUBJOB-COMMAND
1060	OOPT="-O $threads_per_task"
1061
1062	# GESAMTZAHL DER KNOTEN BESTIMMEN
1063	if [[ "$tasks_per_node" != "" ]]
1064	then
1065	TOPT="-T $tasks_per_node"
1066	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1067	fi
1068
1069	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1070	# SETZEN
1071	if [[ $node_usage = default ]]
1072	then
1073	if [[ $host = ibms ]]
1074	then
1075	node_usage=shared
1076	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1077	then
1078	node_usage=singlejob
1079	else
1080	node_usage=not_shared
1081	fi
1082	fi
1083
1084	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
1085	then
1086	printf "\n"
1087	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1088	printf "\n \"shared\" or \"not_shared\""
1089	locat=tasks_per_node; (( iec = 0 )); exit
1090	fi
1091
1092	fi
1093
1094	# PRUEFEN, OB HOSTFILE EXISTIERT
1095	if [[ -n $hostfile ]]
1096	then
1097	if [[ ! -f $hostfile ]]
1098	then
1099	printf "\n"
1100	printf "\n +++ hostfile \"$hostfile\" does not exist"
1101	locat=hostfile; exit
1102	fi
1103	fi
1104
1105	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1106	if [[ $host = ibmy && $do_remote = false ]]
1107	then
1108	if [[ ! -f $HOME/.rhosts ]]
1109	then
1110	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1111	printf "\n\n *** file:"
1112	printf "\n $HOME/.rhosts"
1113	printf "\n was created\n"
1114	fi
1115	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1116	then
1117	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1118	printf "\n\n *** file:"
1119	printf "\n $HOME/.rhosts"
1120	printf "\n was extended by the name of the current host\n"
1121	fi
1122	fi
1123
1124
1125	# Set default value for the maximum number of parallel io streams
1126	if [[ "$maximum_parallel_io_streams" = "" ]]
1127	then
1128	maximum_parallel_io_streams=$numprocs
1129	fi
1130
1131
1132	# Set port number option for calls of ssh/scp, subjob and batch_scp scripts
1133	if [[ "$scp_port" != "" ]]
1134	then
1135	PORTOPT="-P $scp_port"
1136	SSH_PORTOPT="-p $scp_port"
1137	fi
1138
1139
1140	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1141	if [[ $queue = none ]]
1142	then
1143	case $host in
1144	(ibmh) queue=no_class;;
1145	(ibmkisti) queue=class.32plus;;
1146	(ibmy) queue=parallel;;
1147	(lckiaps) queue=normal;;
1148	(lckyoto) queue=ph;;
1149	(lckyuh) queue=fx-single;;
1150	(lckyut) queue=cx-single;;
1151	(lcsgib) queue=testq;;
1152	(lcsgih) queue=testq;;
1153	(lctit) queue=S;;
1154	(nech) queue=none;;
1155	(necriam) queue=SP;;
1156	(unics) queue=unics;;
1157	esac
1158	fi
1159
1160
1161	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1162	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1163	# ERMITTELN
1164	(( i = 0 ))
1165	while (( i < iin ))
1166	do
1167	(( i = i + 1 ))
1168	(( maxcycle = 0 ))
1169
1170	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1171	if [[ "${actionin[$i]}" = di ]]
1172	then
1173	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1174	# REM-MASCHINE AUSWERTEN
1175	eval filename=${pathin[$i]}/${endin[$i]}
1176	else
1177	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1178	# REM-MASCHINE AUSWERTEN
1179	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1180	fi
1181	eval pathname=${pathin[$i]}
1182
1183	# SAVE INPUT FILE NAME FOR PARAMETER FILE CHECK
1184	if [[ ("${transin[$i]}" = job) && (-f $filename) ]]
1185	then
1186	filename_input=$filename
1187	fi
1188
1189	# PRUEFEN AUF VORHANDENSEIN
1190	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1191	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1192	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1193	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1194	then
1195	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1196	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1197	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1198	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1199	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1200	if [[ "${transin[$i]}" != "locopt" ]]
1201	then
1202	printf "\n\n +++ INPUT-file: "
1203	if [[ "${extin[$i]}" = "" ]]
1204	then
1205	printf "\n $filename"
1206	else
1207	printf "\n $filename.${extin[$i]}"
1208	fi
1209	printf "\n does not exist\n"
1210	locat=input; exit
1211	else
1212	transin[$i]="unavailable"
1213	fi
1214	else
1215
1216	# ZYKLUSNUMMER FESTSTELLEN
1217	ls -1 -d $filename > filelist 2>/dev/null
1218	ls -1 -d $filename.* >> filelist 2>/dev/null
1219	while read zeile
1220	do
1221	cycle=$(echo $zeile \| cut -f2 -d".")
1222	if [[ "$cycle" = "$zeile" ]]
1223	then
1224	(( icycle = 0 ))
1225	elif [[ "$cycle" = "${extin[$i]}" ]]
1226	then
1227	(( icycle = 0 ))
1228	else
1229	(( icycle = $cycle ))
1230	fi
1231	if (( icycle > maxcycle ))
1232	then
1233	(( maxcycle = icycle ))
1234	file_to_be_used=$zeile
1235	fi
1236	done <filelist
1237	rm filelist
1238
1239	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1240	if (( maxcycle > 0 ))
1241	then
1242	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1243	then
1244	filename=${filename}.$maxcycle.${extin[$i]}
1245	else
1246	filename=${filename}.$maxcycle
1247	fi
1248	else
1249	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1250	then
1251	filename=${filename}.${extin[$i]}
1252	fi
1253	fi
1254
1255	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1256	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1257	absnamein[$i]=$filename
1258	if (( maxcycle > 0 ))
1259	then
1260	if [[ "${actionin[$i]}" = di ]]
1261	then
1262	frelin[$i]=${endin[$i]}.$maxcycle
1263	else
1264	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1265	fi
1266	else
1267	if [[ "${actionin[$i]}" = di ]]
1268	then
1269	frelin[$i]=${endin[$i]}
1270	else
1271	frelin[$i]=${afname}${endin[$i]}
1272	fi
1273	fi
1274
1275	fi
1276	done
1277
1278	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1279	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1280	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1281	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1282	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1283	(( i = 0 ))
1284	while (( i < iout ))
1285	do
1286	(( i = i + 1 ))
1287	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1288	then
1289	if [[ "${actionout[$i]}" = tr ]]
1290	then
1291	actionout[$i]=""
1292	elif [[ "${actionout[$i]}" = trpe ]]
1293	then
1294	actionout[$i]=pe
1295	elif [[ "${actionout[$i]}" = tra ]]
1296	then
1297	actionout[$i]=a
1298	fi
1299	(( maxcycle = 0 ))
1300	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1301	eval catalogname=${pathout[$i]}
1302	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1303	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1304	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1305	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1306	then
1307
1308	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1309	if cat /dev/null > $filename
1310	then
1311	rm $filename
1312	else
1313
1314	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1315	if [[ ! -d $catalogname ]]
1316	then
1317	if mkdir -p $catalogname
1318	then
1319	printf "\n\n *** directory:"
1320	printf "\n $catalogname"
1321	printf "\n was created\n"
1322	else
1323	printf "\n\n +++ OUTPUT-file:"
1324	printf "\n $filename"
1325	printf "\n cannot be created, because directory does not exist"
1326	printf "\n and cannot be created either"
1327	printf "\n"
1328	locat=output ; exit
1329	fi 2>/dev/null
1330	else
1331	printf "\n\n +++ OUTPUT-file:"
1332	printf "\n $filename"
1333	printf "\n cannot be created, although directory exists"
1334	printf "\n"
1335	locat=output ; exit
1336	fi
1337	fi 2>/dev/null
1338	else
1339
1340	# ZYKLUSNUMMER FESTSTELLEN
1341	ls -1 -d $filename > filelist 2>/dev/null
1342	ls -1 -d $filename.* >> filelist 2>/dev/null
1343	while read zeile
1344	do
1345	cycle=$(echo $zeile \| cut -f2 -d".")
1346	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1347	then
1348	(( icycle = 1 ))
1349	else
1350	(( icycle = $cycle + 1 ))
1351	fi
1352	if (( icycle > maxcycle ))
1353	then
1354	(( maxcycle = icycle ))
1355	fi
1356	done <filelist
1357	rm filelist
1358	fi
1359
1360	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1361	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1362	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1363	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1364	if [[ "${actionout[$i]}" != a ]]
1365	then
1366	if (( maxcycle > 0 ))
1367	then
1368	filename=${filename}.$maxcycle
1369	if cat /dev/null > $filename
1370	then
1371	rm $filename
1372	else
1373	printf "\n +++ OUTPUT-file:"
1374	printf "\n $filename"
1375	printf "\n cannot be created"
1376	locat=output ; exit
1377	fi
1378	fi
1379	else
1380	(( maxcycle = maxcycle - 1 ))
1381	if (( maxcycle > 0 ))
1382	then
1383	filename=${filename}.$maxcycle
1384	fi
1385	fi
1386
1387	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1388	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1389	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1390	pathout[$i]=$filename
1391	if (( maxcycle > 0 ))
1392	then
1393	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1394	else
1395	frelout[$i]=${fname}${endout[$i]}
1396	fi
1397
1398	fi
1399	done
1400
1401
1402	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1403	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1404	then
1405	if [[ "$dvr_inc" = "" ]]
1406	then
1407	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1408	printf "\n This is required for the dvrp_graphics package.\n"
1409	locat=dvr; exit
1410	fi
1411	if [[ "$dvr_lib" = "" ]]
1412	then
1413	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1414	printf "\n This is required for the dvrp_graphics package.\n"
1415	locat=dvr; exit
1416	fi
1417	fi
1418
1419
1420	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1421	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1422	# UEBERSETZT ZU WERDEN)
1423	if [[ "$mainprog" = "" && "$executable" = "" ]]
1424	then
1425	printf "\n +++ neither main program nor executable defined"
1426	locat=source; exit
1427	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1428	then
1429	printf "\n +++ main program as well as executable defined"
1430	locat=source; exit
1431	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1432	then
1433	do_compile=false
1434	fi
1435
1436
1437	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1438	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1439	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1440	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1441	then
1442	rm -rf SOURCES_FOR_RUN_$fname
1443	mkdir SOURCES_FOR_RUN_$fname
1444	fi
1445
1446
1447	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1448	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1449	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1450	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1451	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1452	then
1453
1454	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1455
1456	if [[ "$source_list" = LOCALLY_MODIFIED ]]
1457	then
1458
1459	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1460	source_list=""
1461	cd $source_path
1462
1463
1464	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1465	if [[ ! -d .svn ]]
1466	then
1467	printf "\n\n +++ source directory"
1468	printf "\n \"$source_path\" "
1469	printf "\n is not under control of \"subversion\"."
1470	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1471	fi
1472
1473
1474	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1475	Filenames=""
1476	svn status > tmp_mrun
1477	while read line
1478	do
1479	firstc=`echo $line \| cut -c1`
1480	if [[ $firstc = M \|\| $firstc = "?" ]]
1481	then
1482	Name=`echo "$line" \| cut -c8-`
1483	extension=`echo $Name \| cut -d. -f2`
1484	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1485	then
1486	Filenames="$Filenames "$Name
1487	fi
1488	fi
1489	done < tmp_mrun
1490
1491
1492	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1493	for dateiname in $Filenames
1494	do
1495	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1496	source_list=$source_list"$dateiname "
1497	done
1498
1499	cd - > /dev/null
1500
1501
1502	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1503	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1504	# VORHANDEN
1505	elif [[ "$source_list" != "" && $restart_run != true ]]
1506	then
1507
1508	cd $source_path
1509
1510	for filename in $source_list
1511	do
1512
1513	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1514	if [[ $(echo $filename \| grep -c "/") != 0 ]]
1515	then
1516	printf "\n +++ source code file: $filename"
1517	printf "\n must not contain (\"/\") "
1518	locat=source; exit
1519	fi
1520
1521	if [[ ! -f $filename ]]
1522	then
1523	printf "\n +++ source code file: $filename"
1524	printf "\n does not exist"
1525	locat=source; exit
1526	else
1527	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1528	fi
1529
1530	done
1531
1532	cd - > /dev/null
1533
1534	fi
1535
1536
1537	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1538	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1539	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1540	if [[ $restart_run != true ]]
1541	then
1542
1543	if [[ ! -f "$source_path/$mainprog" ]]
1544	then
1545	printf "\n\n +++ main program: $mainprog"
1546	printf "\n does not exist in source directory"
1547	printf "\n \"$source_path\"\n"
1548	locat=source; exit
1549	else
1550	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1551	then
1552	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1553	source_list=${mainprog}" $source_list"
1554	fi
1555	fi
1556	fi
1557
1558
1559	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1560	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1561	if [[ "$restart_run" != true ]]
1562	then
1563	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1564	if [[ ! -f $makefile ]]
1565	then
1566	printf "\n +++ file \"$makefile\" does not exist"
1567	locat=make; exit
1568	else
1569	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1570	fi
1571	fi
1572
1573
1574	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1575	if [[ $restart_run != true && "$add_source_path" != "" ]]
1576	then
1577
1578	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1579	if [[ ! -d $add_source_path ]]
1580	then
1581	printf "\n\n +++ WARNING: additional source code directory"
1582	printf "\n \"$add_source_path\" "
1583	printf "\n does not exist or is not a directory."
1584	printf "\n No source code will be used from this directory!\n"
1585	add_source_path=""
1586	if [[ $silent == false ]]
1587	then
1588	sleep 3
1589	fi
1590	else
1591
1592	cd $add_source_path
1593	found=false
1594
1595	Names=$(ls -1 *.f90 2>&1)
1596	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1597	Names=$(ls -1 *.F90 2>&1)
1598	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1599	Names=$(ls -1 *.F 2>&1)
1600	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1601	Names=$(ls -1 *.f 2>&1)
1602	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1603	Names=$(ls -1 *.c 2>&1)
1604	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1605
1606	cd - > /dev/null
1607	cd SOURCES_FOR_RUN_$fname
1608
1609	# COPY MAKEFILE IF EXISTING
1610	if [[ -f $add_source_path/Makefile ]]
1611	then
1612	printf "\n\n *** user Makefile from directory"
1613	printf "\n \"$add_source_path\" is used \n"
1614	if [[ $silent == false ]]
1615	then
1616	sleep 1
1617	fi
1618	cp $add_source_path/Makefile .
1619	fi
1620
1621	for dateiname in $AddFilenames
1622	do
1623	if [[ -f $dateiname ]]
1624	then
1625	printf "\n +++ source code file \"$dateiname\" found in additional"
1626	printf "\n source code directory \"$add_source_path\" "
1627	printf "\n but was also given with option \"-s\" which means that it should be taken"
1628	printf "\n from directory \"$source_path\"."
1629	locat=source; exit
1630	fi
1631
1632	cp $add_source_path/$dateiname .
1633	source_list="$source_list $dateiname"
1634
1635	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1636	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1637	then
1638	printf "\n\n +++ user file \"$dateiname\" "
1639	printf "\n is not listed in Makefile \n"
1640	locat=source; exit
1641	else
1642
1643	# Default User-Interface von der Liste entfernen, falls Datei
1644	# ein User-Interface enthaelt
1645	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1646	# then
1647	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1648	# then
1649	# rm -rf user_interface.f90
1650	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1651	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1652	# printf "\n since a user-interface is found in file"
1653	# printf "\n \"$add_source_path/$dateiname\" \n"
1654	# sleep 3
1655	# else
1656	if [[ $found = false ]]
1657	then
1658	found=true
1659	printf "\n\n *** following user file(s) added to the"
1660	printf " files to be translated:\n "
1661	fi
1662	printf "$dateiname "
1663	if [[ $silent == false ]]
1664	then
1665	sleep 0.5
1666	fi
1667
1668	fi
1669	done
1670	[[ $found = true ]] && printf "\n"
1671	cd - > /dev/null
1672	fi
1673	fi
1674
1675
1676	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1677	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1678	if [[ $restart_run != true && -n $package_list ]]
1679	then
1680
1681	cd $source_path
1682
1683	for package in $package_list
1684	do
1685
1686	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1687
1688	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1689	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1690	# LIEFERT
1691	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1692
1693
1694	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1695	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1696	for source_list_name in $package_source_list
1697	do
1698	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1699	then
1700
1701	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1702	ending=`echo $source_list_name \| cut -f2 -d.`
1703	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1704	then
1705	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1706	source_list="$source_list $source_list_name"
1707	fi
1708	fi
1709	done
1710	done
1711
1712	cd - > /dev/null
1713	fi
1714
1715
1716	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1717	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1718	# if [[ "$restart_run" != true ]]
1719	# then
1720	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1721	# if [[ ! -f $makefile ]]
1722	# then
1723	# printf "\n +++ file \"$makefile\" does not exist"
1724	# locat=make; exit
1725	# else
1726	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1727	# fi
1728	# fi
1729
1730	fi # do_compile=true
1731
1732
1733	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1734	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1735	if [[ $do_compile = true ]]
1736	then
1737
1738	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1739	# ZUSAMMENSETZEN
1740	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1741	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1742	then
1743	cpp_options="${cpp_options},-D__ibm=__ibm"
1744	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1745	then
1746	cpp_options="$cpp_options -D__nec"
1747	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1748	then
1749	cpp_options="$cpp_options -D__lc"
1750	else
1751	cpp_options="$cpp_options -D__$localhost"
1752	fi
1753
1754	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1755	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1756	then
1757	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1758	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1759	else
1760	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1761	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1762	fi
1763
1764	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1765	if [[ -n $package_list ]]
1766	then
1767	for package in $package_list
1768	do
1769	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1770	then
1771	if [[ $package != "dvrp_graphics+1PE" ]]
1772	then
1773	cpp_options="${cpp_options},-D__$package=__$package"
1774	else
1775	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1776	export use_seperate_pe_for_dvrp_output=true
1777	fi
1778	else
1779	if [[ $package != "dvrp_graphics+1PE" ]]
1780	then
1781	cpp_options="$cpp_options -D__$package"
1782	else
1783	cpp_options="$cpp_options -D__dvrp_graphics"
1784	export use_seperate_pe_for_dvrp_output=true
1785	fi
1786	fi
1787	done
1788	fi
1789
1790	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1791	if [[ -n $cpp_opts ]]
1792	then
1793	for popts in $cpp_opts
1794	do
1795	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1796	then
1797	cpp_options="${cpp_options},-D__$popts=__$popts"
1798	else
1799	cpp_options="$cpp_options -D__$popts"
1800	fi
1801	done
1802	fi
1803
1804	else
1805
1806
1807	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1808	if [[ $do_remote = false ]]
1809	then
1810	if [[ ! -f $executable ]]
1811	then
1812	printf "\n +++ executable file: $executable"
1813	printf "\n does not exist"
1814	locat=executable; exit
1815	fi
1816	fi
1817	fi
1818
1819
1820	# JOBMODUS FESTSTELLEN
1821	if [[ "$ENVIRONMENT" = BATCH ]]
1822	then
1823	jobmo=BATCH
1824	else
1825	jobmo=INTERACTIVE
1826	fi
1827
1828
1829	# no interactive runs on lctit
1830	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
1831	then
1832	printf "\n +++ no interactive runs allowed on host \"$host\" "
1833	printf "\n please submit batch job using mrun option \"-b\" \n"
1834	locat=normal; exit
1835	fi
1836
1837
1838	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1839	# DURCH BENUTZER ANDERWEITIG VEREINBART
1840	if [[ "$compiler_name" = "" ]]
1841	then
1842
1843	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
1844	locat=compiler_name; exit
1845
1846	fi
1847
1848
1849	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
1850	[[ $localhost = necriam ]] && compiler_name=mpif90
1851
1852
1853
1854	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
1855	kennung=$RANDOM
1856	if [[ "$tmp_user_catalog" = "" ]]
1857	then
1858	if [[ $localhost = ibmh ]]
1859	then
1860	tmp_user_catalog=$SCRATCH
1861	elif [[ $localhost = nech ]]
1862	then
1863	tmp_user_catalog=$WRKSHR
1864	else
1865	tmp_user_catalog=/tmp
1866	fi
1867	fi
1868	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
1869
1870
1871	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
1872	# BESTIMMEN
1873	if [[ "$tmp_data_catalog" = "" ]]
1874	then
1875	if [[ $localhost = nech ]]
1876	then
1877	tmp_data_catalog=$WRKSHR/mrun_restart_data
1878	else
1879	tmp_data_catalog=/tmp/mrun_restart_data
1880	fi
1881	fi
1882
1883
1884	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
1885	# ERSETZEN
1886	if [[ $do_remote = false && $do_compile = true ]]
1887	then
1888	eval fopts=\"$fopts\"
1889	eval lopts=\"$lopts\"
1890	fi
1891
1892
1893
1894	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
1895	fopts="$fopts $netcdf_inc $dvr_inc"
1896	lopts="$lopts $netcdf_lib $dvr_lib"
1897	ROPTS="$ropts"
1898	# if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcflow \|\| $host = lcxe6 \|\| $host = lcxt5m \|\| $host = lck \|\| $host = lckiaps \|\| $host = lckordi \|\| $host = lcsb \|\| $host ) && -n $numprocs ]]
1899	# then
1900	XOPT="-X $numprocs"
1901	# fi
1902
1903
1904
1905	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
1906	# GRAMM BENOETIGT
1907	done=false
1908	while [[ $done = false ]]
1909	do
1910	cputime=$cpumax
1911	if (( $cputime == 0 ))
1912	then
1913	if [[ $do_batch = true ]]
1914	then
1915	printf "\n +++ cpu-time is undefined"
1916	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
1917	printf "\n >>> "
1918	read cputime 1>/dev/null 2>&1
1919	else
1920	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
1921	fi
1922	else
1923	done=true
1924	fi
1925	cpumax=$cputime
1926	done
1927
1928	(( minuten = cputime / 60 ))
1929	(( sekunden = cputime - minuten * 60 ))
1930
1931
1932	# PRUEFEN DER KERNSPEICHERANFORDERUNG
1933	if [[ $do_batch = true ]]
1934	then
1935	done=false
1936	while [[ $done = false ]]
1937	do
1938	if (( memory == 0 ))
1939	then
1940	printf "\n +++ memory demand is undefined"
1941	printf "\n >>> Please type memory in MByte per process as INTEGER:"
1942	printf "\n >>> "
1943	read memory 1>/dev/null 2>&1
1944	else
1945	done=true
1946	fi
1947	done
1948	fi
1949
1950
1951	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
1952	if [[ $do_remote = true && -z $remote_username ]]
1953	then
1954	while [[ -z $remote_username ]]
1955	do
1956	printf "\n +++ username on remote host \"$host\" is undefined"
1957	printf "\n >>> Please type username:"
1958	printf "\n >>> "
1959	read remote_username
1960	done
1961	mc="$mc -u$remote_username"
1962	fi
1963
1964	# CHECK FOR INITIAL COMMANDS AFTER LOGIN
1965	if [[ "$login_init_cmd" != "" ]]
1966	then
1967	export init_cmds="${login_init_cmd};"
1968	fi
1969
1970
1971	# set module load command and export for subjob
1972	if [[ "$modules" != "" ]]
1973	then
1974	if [[ $host = lctit ]]
1975	then
1976	export module_calls=". $modules"
1977	else
1978	export module_calls="module load ${modules};"
1979	fi
1980	fi
1981
1982	# bugfix for wrong netcdf module and for netCDF4 usage in case of mpt
1983	if [[ $host = lcsgib \|\| $host = lcsgih ]]
1984	then
1985	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
1986	then
1987	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
1988	fi
1989	# if [[ $(echo $module_calls \| grep -c mpt) != 0 ]]
1990	# then
1991	# export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/sgi/mpt/2011-02-07/lib:\$LD_LIBRARY_PATH;"
1992	# echo "*** module_calls = $module_calls"
1993	# fi
1994	fi
1995
1996
1997	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
1998	if [[ $host = lcsgib \|\| $host = lcsgih ]]
1999	then
2000	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
2001	then
2002	mpilib=mpt
2003	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
2004	then
2005	mpilib=mvapich
2006	elif [[ $(echo $modules \| grep -c impi ) != 0 ]]
2007	then
2008	mpilib=impi
2009	fi
2010	fi
2011
2012
2013
2014	###########################################################################
2015	# HEADER-AUSGABE
2016	###########################################################################
2017
2018
2019	calltime=$(date)
2020	printf "\n"
2021	# [[ $silent = false ]] && clear
2022	printf "#------------------------------------------------------------------------# \n"
2023	printf "\| %-35s%35s \| \n" "$version" "$calltime"
2024	printf "\| \| \n"
2025	spalte1="called on:"; spalte2=$localhost_realname
2026	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2027	if [[ $local_compile = false ]]
2028	then
2029	if [[ $do_remote = true ]]
2030	then
2031	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2032	else
2033	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2034	fi
2035	else
2036	spalte1="compiling test only!"; spalte2=""
2037	fi
2038	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2039	if [[ -n $numprocs ]]
2040	then
2041	if [[ $run_coupled_model = false ]]
2042	then
2043	spalte1="number of PEs:"; spalte2=$numprocs
2044	else
2045	spalte1="number of PEs:"; spalte2="$numprocs (atmosphere: $numprocs_atmos, ocean: $numprocs_ocean)"
2046	fi
2047	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2048	fi
2049	if [[ -n $tasks_per_node ]]
2050	then
2051	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2052	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2053	fi
2054	if [[ $maximum_parallel_io_streams != $numprocs ]]
2055	then
2056	spalte1="max par io streams:"; spalte2="$maximum_parallel_io_streams"
2057	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2058	fi
2059	if [[ $use_openmp = true ]]
2060	then
2061	spalte1="threads per task:"; spalte2="$threads_per_task"
2062	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2063	fi
2064	printf "\| \| \n"
2065	if [[ $do_compile = true ]]
2066	then
2067	if [[ "$mopts" != "" ]]
2068	then
2069	spalte1="make options:"; spalte2=$(echo "$mopts" \| cut -c-45)
2070	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2071	zeile=$(echo "$mopts" \| cut -c46-)
2072	while [[ "$zeile" != "" ]]
2073	do
2074	spalte1=""
2075	spalte2=$(echo "$zeile" \| cut -c-45)
2076	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2077	zeile=$(echo "$zeile" \| cut -c46-)
2078	done
2079	fi
2080
2081	spalte1="cpp directives:"; spalte2=$(echo "$cpp_options" \| cut -c-45)
2082	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2083	zeile=$(echo "$cpp_options" \| cut -c46-)
2084	while [[ "$zeile" != "" ]]
2085	do
2086	spalte1=""
2087	spalte2=$(echo "$zeile" \| cut -c-45)
2088	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2089	zeile=$(echo "$zeile" \| cut -c46-)
2090	done
2091
2092	spalte1="compiler options:"; spalte2=$(echo "$fopts" \| cut -c-45)
2093	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2094	zeile=$(echo "$fopts" \| cut -c46-)
2095	while [[ "$zeile" != "" ]]
2096	do
2097	spalte1=""
2098	spalte2=$(echo "$zeile" \| cut -c-45)
2099	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2100	zeile=$(echo "$zeile" \| cut -c46-)
2101	done
2102
2103	spalte1="linker options:"; spalte2=$(echo "$lopts" \| cut -c-45)
2104	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2105	zeile=$(echo "$lopts" \| cut -c46-)
2106	while [[ "$zeile" != "" ]]
2107	do
2108	spalte1=""
2109	spalte2=$(echo "$zeile" \| cut -c-45)
2110	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2111	zeile=$(echo "$zeile" \| cut -c46-)
2112	done
2113
2114	spalte1="modules to be load:"; spalte2=$(echo "$modules" \| cut -c-45)
2115	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2116	zeile=$(echo "$modules" \| cut -c46-)
2117	while [[ "$zeile" != "" ]]
2118	do
2119	spalte1=""
2120	spalte2=$(echo "$zeile" \| cut -c-45)
2121	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2122	zeile=$(echo "$zeile" \| cut -c46-)
2123	done
2124
2125	spalte1="main program:"; spalte2=$mainprog
2126	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2127	else
2128	spalte1=executable:; spalte2=$executable
2129	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2130	fi
2131	printf "\| \| \n"
2132	spalte1="base name of files:"; spalte2=$fname
2133	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2134	if [[ $fname != $afname ]]
2135	then
2136	spalte1="base name of input files:"; spalte2=$afname
2137	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2138	fi
2139	spalte1="INPUT control list:"; spalte2=$(echo $input_list)
2140	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2141	spalte1="OUTPUT control list:"; spalte2=$(echo $output_list)
2142	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2143
2144	if [[ "$ocean_file_appendix" = true ]]
2145	then
2146	printf "\| %-35s%-35s \| \n" "suffix \"_O\" is added to local files" " "
2147	fi
2148
2149	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2150	then
2151	spalte1="memory demand / PE":; spalte2="$memory MB"
2152	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2153	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2154	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2155	fi
2156
2157	if [[ $do_compile = true ]]
2158	then
2159	printf "\| \| \n"
2160	printf "\| Files to be compiled: \| \n"
2161	zeile=$source_list
2162	while [[ "$zeile" != "" ]]
2163	do
2164	linestart=$(echo $zeile \| cut -c-70)
2165	printf "\| %-70s \| \n" "$linestart"
2166	zeile=$(echo "$zeile" \| cut -c71-)
2167	done
2168	fi
2169	printf "#------------------------------------------------------------------------#"
2170
2171
2172
2173	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2174	if [[ $do_trace = true ]]
2175	then
2176	(( i = 0 ))
2177	while (( i < iin ))
2178	do
2179	(( i = i + 1 ))
2180	if (( i == 1 ))
2181	then
2182	printf "\n\n >>> INPUT-file assignments:\n"
2183	fi
2184	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2185	done
2186	(( i = 0 ))
2187	while (( i < iout ))
2188	do
2189	(( i = i + 1 ))
2190	if (( i == 1 ))
2191	then
2192	printf "\n\n >>> OUTPUT-file assignments:\n"
2193	fi
2194	printf "\n ${localout[$i]} : ${pathout[$i]}"
2195	done
2196	(( i = 0 ))
2197	while (( i < iic ))
2198	do
2199	(( i = i + 1 ))
2200	if (( i == 1 ))
2201	then
2202	printf "\n\n >>> INPUT-commands:\n"
2203	fi
2204	printf "\n ${in_command[$i]}"
2205	done
2206	(( i = 0 ))
2207	while (( i < ioc ))
2208	do
2209	(( i = i + 1 ))
2210	if (( i == 1 ))
2211	then
2212	printf "\n\n >>> OUTPUT-commands:\n"
2213	fi
2214	printf "\n ${out_command[$i]}"
2215	done
2216	fi
2217
2218
2219	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2220	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2221	then
2222	antwort=dummy
2223	printf "\n\n"
2224	printf " >>> everything o.k. (y/n) ? "
2225	while read antwort
2226	do
2227	if [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2228	then
2229	printf " >>> everything o.k. (y/n) ? "
2230	else
2231	break
2232	fi
2233	done
2234	if [[ $antwort = n \|\| $antwort = N ]]
2235	then
2236	locat=user_abort; (( iec = 0 )); exit
2237	fi
2238	if [[ $do_batch = true ]]
2239	then
2240	printf " >>> batch-job will be created and submitted"
2241	else
2242	if [[ $local_compile = false ]]
2243	then
2244	printf " >>> MRUN will now continue to execute on this machine"
2245	else
2246	printf " >>> a test compilation will now be carried out on this machine"
2247	fi
2248	fi
2249	fi
2250
2251
2252	# PERFORM PARAMETER FILE CHECK (COUPLED RUNS ARE NOT SUPPORTED YET)
2253	# DEFINE VARIABLES FOR FREQUENTLY USED DIRECTORIES
2254	check_depository="${working_directory}/trunk/UTIL"
2255	check_sources="${working_directory}/tmp_check_namelist_files"
2256	skip_check=false
2257
2258	# CHECK IF NAMELIST_FILE_CHECK HAS BEEN COMPILED SUCCESSFULLY
2259	if [[ ! -f $check_depository/check_namelist_files.tar ]]
2260	then
2261	skip_check=true
2262	reason="run on remote host or parameter file check has not been compiled."
2263	fi
2264	if [[ ! -f $PALM_BIN/check_namelist_files.x ]]
2265	then
2266	skip_check=true
2267	reason="parameter file check has not been compiled."
2268	fi
2269
2270	# CHECK FOR PARALLEL RUN; OTHERWISE SKIP CHECK
2271	if [[ "$cond1" != "parallel" && "$cond2" != "parallel" ]]
2272	then
2273	skip_check=true
2274	reason="serial run."
2275	fi
2276
2277	# ONLY PERFORM CHECK IF -z OPTION IS NOT SET, NO RESTART RUN IS CARRIED OUT
2278	# AND IF THE EXECUTION HOST IS THE LOCAL HOST
2279	# ATTENTION: THIS ROUTINE DOES NOT WORK IF THE COMPILER ON THE LOCAL HOST
2280	# DIFFERS FROM THE COMPILER ON THE REMOTE HOST
2281	if [[ $check_namelist_files == false ]]
2282	then
2283	skip_check=true
2284	reason="-z option set."
2285	fi
2286
2287	if [[ $fromhost != $localhost ]]
2288	then
2289	skip_check=true
2290	reason="submitting host is local host."
2291	fi
2292
2293	if [[ $run_coupled_model == true ]]
2294	then
2295	skip_check=true
2296	reason="coupled run."
2297	fi
2298
2299	if [[ $restart_run == true ]]
2300	then
2301	skip_check=true
2302	reason="restart run."
2303	fi
2304
2305	# SKIP CHECK IN CASE OF RESTART RUN: CHECK WHETHER THE LAST CHAR IS "f" IN PARIN
2306	(( last_char = `echo $filename_input \| wc -c` - 1 ))
2307	last_char=`echo $filename_input \| cut -c $last_char`
2308	if [[ "$last_char" == "f" ]]
2309	then
2310	skip_check=true
2311	reason="restart run."
2312	fi
2313
2314	if [[ $skip_check == false ]]
2315	then
2316	tmp_check=${working_directory}/tmp_check
2317
2318	# GET TOPOGRAPHY PARAMETER FILE SUFFIX (USUALLY "_P3DF"). THIS FILE MIGHT IS
2319	# NOT NECESSARILY REQUIRED
2320	line=""
2321	found=false
2322	grep "TOPOGRAPHY_DATA" $config_file > $tmp_check
2323	while read line1
2324	do
2325	line="$line1"
2326	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2327	then
2328	topo_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2329	found=true
2330	fi
2331	done < $tmp_check
2332
2333	if [[ $found = false ]]
2334	then
2335	printf "\n +++ no TOPOGRAPHY list entry found in the configuration file."
2336	fi
2337
2338	rm -rf ${working_directory}/tmp_check
2339
2340	# CHECK IF THE A P3DF FILE MUST BE CHECKED
2341	for item in $input_list
2342	do
2343	if [[ "$item" == "restart" ]]
2344	then
2345	check_restart=1
2346	else
2347	check_restart=0
2348	fi
2349	done
2350
2351	# ERROR IF NO PARAMETER FILE WAS FOUND, OTHERWISE PROCEED
2352	if [[ (! -f $filename_input) && ( "$filename_input" != "" ) ]]
2353	then
2354	printf "\n\n +++ ERROR: parameter file ($filename_input) not found."
2355	locat=check_namelist; exit
2356	fi
2357
2358	# CHECK IF THE RESTART PARAMETER FILE EXISTS (IF NECESSARY)
2359	if [[ $check_restart == 1 ]]
2360	then
2361
2362	filenamef="${filename_input}f"
2363	if [[ ! -f $filenamef ]]
2364	then
2365	printf "\n\n +++ WARNING: restart parameter file ($filenamef) is missing."
2366	check_restart=0
2367	answer=dummy
2368	printf "\n\n"
2369
2370	if [[ $silent == false ]]
2371	then
2372	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2373	do
2374	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2375	read answer
2376	done
2377	if [[ $answer = a \|\| $answer = A ]]
2378	then
2379	printf "\n +++ Aborting...."
2380	locat=normal; exit
2381	fi
2382	fi
2383	else
2384	check_restart=1
2385	fi
2386	fi
2387
2388	# CREATE TEMPORARY SOURCES_FOR_CHECK PATH
2389	mkdir $check_sources
2390	cd $check_sources
2391
2392
2393	# CHECK FOR USER CODE, OTHERWISE USE THE PRECOMPILED CHECK_NAMELIST_FILES.X
2394	if [[ -d $add_source_path ]]
2395	then
2396	printf "\n\n *** copying files from $check_depository"
2397	cp $check_depository/check_namelist_files.tar ./
2398
2399	printf "\n\n *** untar of makefile and source files in $check_sources"
2400	tar -xf check_namelist_files.tar > /dev/null 2>&1
2401
2402	printf "\n\n *** adding user code."
2403	cp $add_source_path/* ./
2404	touch check_namelist_files.f90
2405
2406	# GET COMPILER OPTIONS AND PERFORM MAKE
2407	printf "\n\n *** compiling code if necessary...\n"
2408
2409	# workaround for batch jobs on local machine (lcxe6)
2410	if [[ $do_batch == true && $do_remote == false ]]
2411	then
2412	eval $init_cmds
2413	fi
2414
2415	# GET CHECK OPTIONS
2416	line=""
2417	found=false
2418
2419	grep "$localhost" ${base_directory}/${config_file} \| grep "%cpp_options" > $tmp_check
2420
2421	while read line1
2422	do
2423
2424	if [[ $(echo $line1 \| cut -d" " -s -f3-) = "$localhost" ]]
2425	then
2426	line="$line1"
2427	fi
2428
2429	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2430	then
2431	# EVENTUELLE DOPPELPUNKTE AUS OPTIONSSTRING UND ALLE -D ENTFERNEN
2432	line="$line "
2433	copts_check=`echo $line \| cut -d" " -s -f2 \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g' \| sed 's/-D[^ ]* //g' \| sed 's/ -D.*//g'`
2434	found=true
2435	fi
2436
2437	done < $tmp_check
2438	copts_check="$copts_check -D__check -D__parallel"
2439
2440	make -f Makefile_check F90=$compiler_name_ser COPT="$copts_check"
2441
2442	# GET MAKE OUTPUT
2443	if [[ $? != 0 ]]
2444	then
2445	printf "\n +++ error during make."
2446	answer=dummy
2447	printf "\n\n"
2448	if [[ $silent == false ]]
2449	then
2450	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2451	do
2452	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2453	read answer
2454	done
2455	if [[ $answer = a \|\| $answer = A ]]
2456	then
2457	printf "\n +++ Aborting..."
2458	rm -rf $check_sources
2459	locat=normal; exit
2460	else
2461	skip_check=true
2462	fi
2463	else
2464	skip_check=true
2465	fi
2466	fi
2467	else
2468	cp $PALM_BIN/check_namelist_files.x ./
2469	fi
2470
2471	cp $filename_input ./PARIN
2472	if [[ $check_restart == 1 ]]
2473	then
2474	cp $filenamef ./PARINF
2475	fi
2476
2477	if [[ -f ${pathname}/${fname}${topo_suffix} && $skip_check == false ]]
2478	then
2479	printf "\n *** adding topography data"
2480	cp ${pathname}/${fname}${topo_suffix} ./TOPOGRAPHY_DATA
2481
2482	# IN CASE OF TOPOGRAPHY AND HIGH GRID POINT NUMBERS, THE STACK SIZE
2483	# MUST BE INCREASED. THIS IS DUE TO THE ARRAY nzb_local AND topo_height,
2484	# WHICH REQUIRE SUFFICIENT MEMORY
2485	ulimit -s unlimited
2486	fi
2487
2488	# CREATE ENVPAR FILE, WHICH IS NEEDED BY CHECK_NAMELIST_FILES.X
2489	cat > ENVPAR << %%END%%
2490	&envpar run_identifier = '$fname', host = '$host',
2491	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2492	maximum_parallel_io_streams = $maximum_parallel_io_streams,
2493	maximum_cpu_time_allowed = ${cpumax}.,
2494	revision = '$global_revision',
2495	local_dvrserver_running = $local_dvrserver_running /
2496
2497	%%END%%
2498
2499	# SAFETY CHECK: ONLY PROCEED IF THE PARAMETER CHECK PROGRAM WAS PROPERLY COMPILED
2500	if [[ ! -f check_namelist_files.x && $skip_check == false ]]
2501	then
2502	printf "\n +++ WARNING: check_namelist_files.x not found."
2503	answer=dummy
2504	printf "\n\n"
2505
2506	if [[ $silent == false ]]
2507	then
2508	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2509	do
2510	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2511	read answer
2512	done
2513	if [[ $answer = a \|\| $answer = A ]]
2514	then
2515	printf "\n +++ Aborting..."
2516	rm -rf $check_sources
2517	locat=normal; exit
2518	else
2519	printf "\n *** skipping parameter file check."
2520	fi
2521	fi
2522
2523	elif [[ $skip_check == false ]]
2524	then
2525	# STARTING THE PARAMETER FILE CHECK
2526	printf "\n\n *** starting parameter file check..."
2527
2528	# CHECKING THE P3D FILE
2529	printf "\n\n (1) checking $filename_input"
2530	echo "$numprocs 0 0" > VARIN
2531	errors=`./check_namelist_files.x < VARIN 2>&1`
2532
2533	check_error=false
2534	if [[ "$errors" == "" ]]
2535	then
2536	printf " --> o.k."
2537	else
2538	printf " --> failed."
2539	check_error=true
2540	printf "\n\n $errors"
2541	fi
2542
2543	# CHECKING THE PD3F FILE IF NECESSARY
2544	if [[ $check_restart == 1 && $check_error == false ]]
2545	then
2546	printf "\n\n (2) checking $filenamef"
2547
2548	# FIRST CHECK IF INITIALIZING_ACTIONS="READ_RESTART_DATA" IS SET
2549	# IN &INIPAR LIST
2550	found=false
2551	cat PARINF \| while read line
2552	do
2553	line=$(echo $line\|sed 's/ //g')
2554	if [[ $line == "&inipar" ]]
2555	then
2556	start_search=true
2557	fi
2558
2559	if [[ $start_search == true ]]
2560	then
2561	if [[ $line == "initializing_actions='read_restart_data'" ]]
2562	then
2563	found=true
2564	break
2565	fi
2566	fi
2567
2568	if [[ $line == "/" ]]
2569	then
2570	start_search=false
2571	fi
2572
2573	done
2574
2575	if [[ $found = false ]]
2576	then
2577	printf "\n\n +++ ERROR: initializing_actions = 'read_restart_data' not found"
2578	printf "\n in &inipar list in $fname$p3df_suffix."
2579	rm -rf $check_sources
2580	locat=check_namelist; exit
2581	fi
2582
2583	# READ max_user_pr FROM FILES
2584	if [[ -f parin_for_check ]]
2585	then
2586	read max_pr_user < parin_for_check
2587	else
2588	max_user_pr=0
2589	fi
2590
2591	echo "$numprocs 1 $max_pr_user" > VARIN
2592	errors=`./check_namelist_files.x < VARIN 2>&1`
2593
2594	if [[ "$errors" == "" ]]
2595	then
2596	printf " --> o.k."
2597	else
2598	printf " --> failed."
2599	check_error=true
2600	printf "\n\n $errors"
2601	fi
2602	fi
2603
2604	# REPORT ERRORS AND CONTINUE/EXIT
2605	if [[ $check_error == true ]]
2606	then
2607	printf "\n +++ errors found in the parameter file!\n"
2608	answer=dummy
2609	printf "\n\n"
2610
2611	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2612	do
2613	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2614	read answer
2615	done
2616
2617	if [[ $answer = a \|\| $answer = A ]]
2618	then
2619	printf "\n +++ Aborting..."
2620	rm -rf $check_sources
2621	locat=normal; exit
2622	fi
2623	else
2624	printf "\n\n *** parameter file(s) seem(s) to be o.k.\n"
2625	fi
2626	rm -rf $check_sources
2627	fi
2628	else
2629	printf "\n\n +++ skipping parameter file check due to following reason: $reason \n"
2630	fi
2631
2632	# DELETE TEMPORARY DIRECTORY AND FINISH NAMELIST FILE CHECK
2633	rm -rf $check_sources
2634	cd $working_directory
2635
2636
2637	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2638	# CHENDE AKTIONEN DURCHGEFUEHRT
2639	if [[ $do_batch = false ]]
2640	then
2641
2642
2643	# TEMPORAEREN KATALOG ERZEUGEN
2644	mkdir -p $TEMPDIR
2645	chmod go+rx $TEMPDIR
2646	tmpcreate=true
2647
2648	# set striping on lustre file system
2649	# if [[ $localhost = lcsgih ]]
2650	# then
2651	# lfs setstripe -s 8192k -c 16 $TEMPDIR
2652	# lfs getstripe $TEMPDIR
2653	# fi
2654
2655
2656	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2657	# TEMPORAERES VERZEICHNIS KOPIEREN
2658	if [[ $do_compile = true ]]
2659	then
2660
2661	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2662	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2663	if [[ $localhost = nech ]]
2664	then
2665	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2666	if mkdir -p $TEMPDIR_COMPILE
2667	then
2668	printf "\n *** \"$TEMPDIR_COMPILE\" "
2669	printf "\n is generated as temporary directory for cross compiling\n"
2670	else
2671	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2672	printf "\n needed for cross compilation failed"
2673	locat=compile
2674	exit
2675	fi
2676	else
2677	TEMPDIR_COMPILE=$TEMPDIR
2678	fi
2679
2680
2681	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2682	line=""
2683	grep "%depository_path" $config_file > tmp_mrun
2684	while read line
2685	do
2686	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2687	then
2688	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2689	then
2690	global_depository_path=`echo $line \| cut -d" " -s -f2`
2691	fi
2692	fi
2693	done < tmp_mrun
2694
2695	line=""
2696	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2697	while read line
2698	do
2699	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2700	then
2701	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2702	then
2703	local_depository_path=`echo $line \| cut -d" " -s -f2`
2704	fi
2705	fi
2706	done < tmp_mrun
2707
2708	if [[ "$local_depository_path" = "" ]]
2709	then
2710	if [[ "$global_depository_path" != "" ]]
2711	then
2712	local_depository_path=$global_depository_path
2713	else
2714	printf "\n\n +++ no depository path found in configuration file"
2715	printf "\n for local host \"$localhost\" "
2716	printf "\n please set \"\%depository_path\" in configuration file\n"
2717	locat=config_file; exit
2718	fi
2719	fi
2720	eval local_depository_path=$local_depository_path
2721	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2722	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2723
2724
2725	basename=`echo $mainprog \| cut -f1 -d"."`
2726	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2727	if [[ ! -f $make_depository ]]
2728	then
2729	printf "\n"
2730	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2731	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2732	else
2733	cp $make_depository $TEMPDIR_COMPILE
2734	cd $TEMPDIR_COMPILE
2735	tar -xf $make_depository > /dev/null 2>&1
2736	cd - > /dev/null
2737	fi
2738
2739	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2740
2741	else
2742
2743	cp $executable ${TEMPDIR}/a.out
2744
2745	fi
2746
2747
2748	# WECHSEL IN TEMPORAEREN KATALOG
2749	cd $TEMPDIR
2750	printf "\n *** changed to temporary directory: $TEMPDIR"
2751
2752
2753	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2754	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2755	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2756	# ERMITTELN
2757	(( i = 0 ))
2758	while (( i < iout ))
2759	do
2760	(( i = i + 1 ))
2761	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2762	then
2763	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2764	else
2765	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2766	fi
2767	done
2768
2769
2770	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2771	if [[ $do_compile = true ]]
2772	then
2773
2774
2775	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2776	printf "\n\n\n *** compilation starts \n$striche\n"
2777	printf " *** compilation with make using following options:\n"
2778	printf " make depository: $make_depository"
2779	if [[ "$mopts" != "" ]]
2780	then
2781	printf " make options: $mopts\n"
2782	fi
2783	printf " compilername: $compiler_name\n"
2784	printf " compiler options: $fopts\n"
2785	printf " preprocessor directives: $cpp_options \n"
2786	printf " linker options: $lopts \n"
2787	if [[ "$modules" != "" ]]
2788	then
2789	printf " modules to be load: $modules \n"
2790	fi
2791	printf " source code files: $source_list \n"
2792
2793	if [[ $localhost = nech ]]
2794	then
2795	# init_cmds was ". /SX/opt/etc/initsx.sh;"
2796	ssh $SSH_PORTOPT 136.172.44.192 -l $usern "$init_cmds $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2797	cp $TEMPDIR_COMPILE/a.out .
2798	[[ $? != 0 ]] && compile_error=true
2799	rm -rf $TEMPDIR_COMPILE
2800	elif [[ $localhost = ibmh ]]
2801	then
2802	printf " compiler is called via ssh on \"plogin1\" \n"
2803	ssh $SSH_PORTOPT plogin1 -l $usern "$init_cmds export PATH=/sw/ibm/xlf/13.1.0.8/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2804	[[ ! -f a.out ]] && compile_error=true
2805	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2806	elif [[ $localhost = lcsgib ]]
2807	then
2808	printf " compiler is called via ssh on \"bicegate0\" \n"
2809	ssh $SSH_PORTOPT bicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2810	[[ ! -f a.out ]] && compile_error=true
2811	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2812	elif [[ $localhost = lcsgih ]]
2813	then
2814	printf " compiler is called via ssh on \"hicegate0\" \n"
2815	ssh $SSH_PORTOPT hicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2816	[[ ! -f a.out ]] && compile_error=true
2817	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2818	elif [[ $localhost = lcflow ]]
2819	then
2820	printf " compiler is called via ssh on \"flow\" \n"
2821	ssh $SSH_PORTOPT flow02.hpc.uni-oldenburg.de -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2822	[[ ! -f a.out ]] && compile_error=true
2823	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2824	else
2825	[[ "$init_cmds" != "" ]] && eval $init_cmds
2826	[[ "$module_calls" != "" ]] && eval $module_calls
2827	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2828
2829	fi
2830
2831	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2832	then
2833	printf "\n +++ error occured while compiling or linking"
2834	locat=compile
2835
2836	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
2837	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
2838	# then
2839	exit
2840	# else
2841	# locat=normal
2842	# fi
2843	else
2844	printf "$striche\n *** compilation finished \n"
2845	fi
2846	fi
2847
2848
2849	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2850	if [[ $local_compile = true ]]
2851	then
2852	cd $HOME
2853	rm -rf $TEMPDIR
2854	locat=local_compile; exit
2855	fi
2856
2857
2858	# BEREITSTELLEN DER INPUT-DATEIEN
2859	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2860	(( i = 0 ))
2861	while (( i < iin ))
2862	do
2863	(( i = i + 1 ))
2864	if (( i == 1 ))
2865	then
2866	printf "\n\n *** providing INPUT-files:\n$striche"
2867	fi
2868
2869
2870	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2871	if [[ "${transin[$i]}" = unavailable ]]
2872	then
2873	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2874	then
2875	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2876	printf "\n is not available!"
2877	else
2878	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2879	printf "\n is not available!"
2880	fi
2881	continue
2882	fi
2883
2884	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2885	files_for_pes=false; datentyp=file
2886	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2887	then
2888	files_for_pes=true; datentyp=directory
2889	actionin[$i]=""
2890	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2891	then
2892	actionin[$i]=""
2893	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2894	then
2895	files_for_pes=true; datentyp=directory
2896	actionin[$i]="ar"
2897	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2898	then
2899	actionin[$i]="ar"
2900	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2901	then
2902	files_for_pes=true; datentyp=directory
2903	actionin[$i]="fl"
2904	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2905	then
2906	actionin[$i]="fl"
2907	fi
2908
2909	if [[ $files_for_pes = true ]]
2910	then
2911	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
2912	else
2913	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
2914	fi
2915
2916	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
2917	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
2918	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
2919	# SERVER ZU HOLEN
2920	if [[ "${actionin[$i]}" = fl ]]
2921	then
2922	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
2923	if [[ $files_for_pes = false ]]
2924	then
2925	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
2926	then
2927	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
2928	got_tmp[$i]=true
2929	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2930	then
2931	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2932	printf "\n *** trying to use backup copy in \"$WORK\" "
2933	cp $WORK/${frelin[$i]} ${localin[$i]}
2934	else
2935	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2936	printf "\n or \"$tmp_data_catalog\" does not exist!"
2937	printf "\n *** trying to get copy from archive"
2938	actionin[$i]=ar
2939	fi
2940	else
2941	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
2942	then
2943	mkdir ${localin[$i]}
2944	cd $tmp_data_catalog/${frelin[$i]}
2945	for file in $(ls *)
2946	do
2947	ln $file $TEMPDIR/${localin[$i]}
2948	done
2949	cd $TEMPDIR
2950	got_tmp[$i]=true
2951	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2952	then
2953	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2954	printf "\n *** trying to use backup copy in \"$WORK\" "
2955	cp -r $WORK/${frelin[$i]} ${localin[$i]}
2956	else
2957	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2958	printf "\n or \"$tmp_data_catalog\" does not exist!"
2959	printf "\n *** trying to get copy from archive"
2960	actionin[$i]=ar
2961	fi
2962	fi
2963	fi
2964
2965
2966	# DATEI LIEGT AUF ARCHIV-SERVER
2967	if [[ "${actionin[$i]}" = ar ]]
2968	then
2969
2970	if [[ $files_for_pes = false ]]
2971	then
2972	printf "\n file will be restored from archive-system ($archive_system)!"
2973	else
2974	printf "\n directory will be restored from archive-system ($archive_system)!"
2975	fi
2976
2977	file_restored=false
2978
2979	if [[ $archive_system = asterix ]]
2980	then
2981	do_stagein=true
2982	(( stagein_anz = 0 ))
2983	while [[ $do_stagein = true ]]
2984	do
2985	if [[ $files_for_pes = false ]]
2986	then
2987	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
2988	else
2989	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
2990	fi
2991	cat STAGEIN_OUTPUT
2992	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
2993	then
2994	file_restored=true
2995	do_stagein=false
2996	else
2997	(( stagein_anz = stagein_anz + 1 ))
2998	if (( stagein_anz == 10 ))
2999	then
3000	printf "\n +++ stagein stoped after 10 tries"
3001	locat=stage
3002	exit
3003	fi
3004	printf "\n +++ restoring from archive failed, trying again:"
3005	sleep 900
3006	fi
3007	done
3008	elif [[ $archive_system = DMF ]]
3009	then
3010	if [[ $files_for_pes = false ]]
3011	then
3012	printf "\n +++ restoring of single files impossible with $archive_system !\n"
3013	locat=DMF
3014	exit
3015	else
3016	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
3017	cp -r $ARCHIVE/${frelin[$i]} $PWD
3018	file_restored=true
3019	fi
3020	elif [[ $archive_system = tivoli ]]
3021	then
3022	if [[ $files_for_pes = false ]]
3023	then
3024	if [[ $localhost = lcsgih ]]
3025	then
3026	ssh $SSH_PORTOPT $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3027	else
3028	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3029	fi
3030	else
3031	(( inode = 0 ))
3032	while (( inode < nodes ))
3033	do
3034	if [[ $localhost = lcsgih ]]
3035	then
3036	ssh $SSH_PORTOPT $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3037	else
3038	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3039	fi
3040	(( inode = inode + 1 ))
3041	done
3042	fi
3043	file_restored=true
3044	elif [[ $archive_system = ut ]]
3045	then
3046	if [[ $files_for_pes = false ]]
3047	then
3048	cp $UT/${frelin[$i]} .
3049	else
3050	(( inode = 0 ))
3051	while (( inode < nodes ))
3052	do
3053	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
3054	(( inode = inode + 1 ))
3055	done
3056	fi
3057	file_restored=true
3058	else
3059	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
3060	locat=rearchive
3061	exit
3062	fi
3063
3064	if [[ $file_restored = true ]]
3065	then
3066
3067	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
3068	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
3069	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
3070	if [[ $files_for_pes = false ]]
3071	then
3072	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
3073	else
3074	mkdir $tmp_data_catalog/${frelin[$i]}
3075	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
3076	fi
3077	got_tmp[$i]=true
3078
3079	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
3080	mv ${frelin[$i]} ${localin[$i]}
3081
3082	fi
3083	fi
3084
3085
3086	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
3087	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
3088	then
3089
3090	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
3091	then
3092
3093	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
3094	printf "\n file will be provided for $numprocs processors"
3095	mkdir ${localin[$i]}
3096	ival=$numprocs
3097	(( ii = 0 ))
3098	while (( ii <= ival-1 ))
3099	do
3100	if (( ii < 10 ))
3101	then
3102	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
3103	elif (( ii < 100 ))
3104	then
3105	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
3106	elif (( ii < 1000 ))
3107	then
3108	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
3109	else
3110	cp ${absnamein[$i]} ${localin[$i]}/_$ii
3111	fi
3112	(( ii = ii + 1 ))
3113	done
3114
3115	else
3116
3117	if [[ $files_for_pes = true ]]
3118	then
3119
3120	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
3121	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
3122	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
3123	# PER MOVE UMBENANNT WERDEN
3124	printf "\n providing $numprocs files for the respective processors"
3125	mkdir ${localin[$i]}
3126	if [[ $link_local_input = true ]]
3127	then
3128	printf " using ln -f\n"
3129	cd ${absnamein[$i]}
3130	for file in $(ls *)
3131	do
3132	ln -f $file ${localin[$i]}
3133	done
3134	cd $TEMPDIR
3135	fi
3136	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
3137	if [[ ! -f "${localin[$i]}/_0000" ]]
3138	then
3139	if [[ $link_local_input = true ]]
3140	then
3141	printf " ln failed for .../_0000, using cp...\n"
3142	fi
3143	cp -r ${absnamein[$i]}/* ${localin[$i]}
3144	fi
3145
3146	else
3147	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
3148	if [[ $link_local_input = true ]]
3149	then
3150	printf " using ln -f\n"
3151	ln -f ${absnamein[$i]} ${localin[$i]}
3152	fi
3153	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
3154	if [[ ! -f "${localin[$i]}" ]]
3155	then
3156	if [[ $link_local_input = true ]]
3157	then
3158	printf " ln failed, using cp...\n"
3159	fi
3160	cp ${absnamein[$i]} ${localin[$i]}
3161	fi
3162	fi
3163	fi
3164	fi
3165
3166	done
3167	if (( i != 0 ))
3168	then
3169	printf "\n$striche\n *** all INPUT-files provided \n"
3170	fi
3171
3172
3173	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
3174	(( i = 0 ))
3175	while (( i < iic ))
3176	do
3177	(( i = i + 1 ))
3178	if (( i == 1 ))
3179	then
3180	printf "\n\n *** execution of INPUT-commands:\n$striche"
3181	fi
3182	printf "\n >>> ${in_command[$i]}"
3183	eval ${in_command[$i]}
3184	if (( i == iic ))
3185	then
3186	printf "\n$striche\n"
3187	fi
3188	done
3189
3190
3191	# VERBLEIBENDE CPU-ZEIT BERECHNEN
3192	cpurest=${cpumax}.
3193
3194
3195	# START DVR STREAMING SERVER
3196	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3197	then
3198	if [[ "$dvr_server" != "" ]]
3199	then
3200
3201	printf "\n\n *** preparing the dvr streaming server configuration file"
3202
3203	# Check, if a dvr server is already running
3204	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
3205	if [[ "$running_dvrserver_id" != "" ]]
3206	then
3207
3208	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
3209	printf "\n This server is used instead starting a new one!"
3210	printf "\n If required, script \"process_dvr_output\" has to be run manually."
3211
3212	else
3213
3214	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
3215	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
3216	then
3217	cp ${PALM_BIN}/.dvrserver.config .
3218
3219	# Entering the BASEDIR, UID and GID into this file
3220	user_id=`id -u`
3221	group_id=`id -g`
3222	# & is needed as seperator, because TEMPDIR contains /
3223	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
3224	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
3225	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
3226	mv .dvrserver.3 .dvrserver.config
3227	rm .dvrserver.1 .dvrserver.2
3228
3229	# Start dvr server in background, get his id and print on terminal
3230	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
3231	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
3232	printf "\n *** streaming server with id=$dvrserver_id is started in background"
3233	local_dvrserver_running=.TRUE.
3234	else
3235	printf "\n +++ missing file \".dvrserver.config\" in directory:"
3236	printf "\n \"$PALM_BIN\" "
3237	locat=dvr
3238	exit
3239	fi
3240
3241	fi
3242
3243	else
3244	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
3245	fi
3246	fi
3247
3248
3249	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
3250	# LESEN VON PALM)
3251	cat > ENVPAR << %%END%%
3252	&envpar run_identifier = '$fname', host = '$localhost',
3253	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
3254	maximum_parallel_io_streams = $maximum_parallel_io_streams,
3255	maximum_cpu_time_allowed = ${cpumax}.,
3256	revision = '$global_revision',
3257	local_dvrserver_running = $local_dvrserver_running /
3258
3259	%%END%%
3260
3261
3262	# PROGRAMMSTART
3263	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
3264	PATH=$PATH:$TEMPDIR
3265
3266	# MPI debug option (argument checking, slows down execution due to increased latency)
3267	if [[ "$mpi_debug" = true ]]
3268	then
3269	export MPI_CHECK_ARGS=1
3270	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
3271	fi
3272
3273	if [[ "$totalview" = true ]]
3274	then
3275	printf "\n *** totalview debugger will be used"
3276	tv_opt="-tv"
3277	else
3278	tv_opt=""
3279	fi
3280
3281	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
3282	then
3283	if [[ "$ENVIRONMENT" = BATCH ]]
3284	then
3285	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
3286	then
3287	printf "\n +++ debug is allowed in interactive mode only"
3288	locat=debug
3289	exit
3290	fi
3291	fi
3292	if [[ $localhost = ibmh ]]
3293	then
3294
3295	# SETUP THE IBM MPI ENVIRONMENT
3296	export MP_SHARED_MEMORY=yes
3297	export AIXTHREADS_SCOPE=S
3298	export OMP_NUM_THREADS=$threads_per_task
3299	export AUTHSTATE=files
3300	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3301
3302	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
3303	export MP_ADAPTER_USE=shared
3304	export MP_CPU_USE=multiple
3305	export MP_TIMEOUT=1200
3306
3307	unset MP_TASK_AFFINITY
3308
3309	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
3310	#(( ii = 1 ))
3311	#while (( ii <= $numprocs ))
3312	#do
3313	# echo $localhost_realname >> hostfile
3314	# (( ii = ii + 1 ))
3315	#done
3316	#export MP_HOSTFILE=hostfile
3317
3318	if [[ "$LOADLBATCH" = yes ]]
3319	then
3320	totalview poe a.out $ROPTS
3321	else
3322	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3323	export TVDSVRLAUNCHCMD=ssh
3324	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3325	fi
3326	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
3327	then
3328	# CURRENTLY NO DEBUGGER ON LCSGI
3329	if [[ $run_coupled_model = true ]]
3330	then
3331	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
3332	locat=debug
3333	exit
3334	else
3335	echo "no_coupling" > runfile_atmos
3336	fi
3337	(( ii = $numprocs / $threads_per_task ))
3338	export OMP_NUM_THREADS=$threads_per_task
3339	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3340	if [[ $threads_per_task != 1 ]]
3341	then
3342	printf "\n threads per task: $threads_per_task"
3343	fi
3344	printf "\n\n"
3345	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3346	then
3347	# export MPI_LAUNCH_TIMEOUT=360
3348	if [[ "$totalview" = true ]]
3349	then
3350	printf "\n running totalview debugger"
3351	mpiexec_mpt $tv_opt -n $ii ./a.out $ROPTS < runfile_atmos
3352	else
3353	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3354	fi
3355	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3356	then
3357	# ulimit -s 300000 # A too large stack size causes problems
3358	# export MV2_NUM_PORTS=2
3359	# export MV2_CPU_MAPPING=0:1:2:3
3360	if [[ "$totalview" = true ]]
3361	then
3362	printf "\n running totalview debugger"
3363	mpiexec $tv_opt ./a.out $ROPTS < runfile_atmos
3364	else
3365	mpiexec ./a.out $ROPTS < runfile_atmos
3366	fi
3367	fi
3368	else
3369	printf "\n +++ no debug available on \"$localhost\" "
3370	printf "\n or not implemented in mrun so far"
3371	locat=debug
3372	exit
3373	fi
3374
3375	# end debug mode
3376	else
3377
3378	# normal execution
3379	if [[ -n $numprocs ]]
3380	then
3381	# RUNNING THE PROGRAM ON PARALLEL MACHINES
3382	if [[ $(echo $host \| cut -c1-3) = ibm ]]
3383	then
3384	# SETUP THE IBM MPI ENVIRONMENT
3385	if [[ $host != ibmh && $host != ibmkisti ]]
3386	then
3387	export MP_SHARED_MEMORY=yes
3388	export AIXTHREAD_SCOPE=S
3389	export OMP_NUM_THREADS=$threads_per_task
3390	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
3391	export AUTHSTATE=files
3392	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3393	# export MP_PRINTENV=yes
3394
3395	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3396	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3397	export MP_WAIT_MODE=poll
3398	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3399	fi
3400
3401	if [[ $host = ibmkisti ]]
3402	then
3403	export LANG=en_US
3404	export MP_SHARED_MEMORY=yes
3405	if [[ $threads_per_task = 1 ]]
3406	then
3407	export MP_SINGLE_THREAD=yes
3408	export MEMORY_AFFINITY=MCM
3409	else
3410	export OMP_NUM_THREADS=$threads_per_task
3411	fi
3412	fi
3413
3414	if [[ "$LOADLBATCH" = yes ]]
3415	then
3416	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3417	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3418	then
3419	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3420	else
3421	if [[ $run_coupled_model = false ]]
3422	then
3423	if [[ "$ocean_file_appendix" = true ]]
3424	then
3425	echo "precursor_ocean" > runfile_atmos
3426	else
3427	echo "precursor_atmos" > runfile_atmos
3428	fi
3429	else
3430	(( iia = $numprocs_atmos / $threads_per_task ))
3431	(( iio = $numprocs_ocean / $threads_per_task ))
3432	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3433	printf "\n using $coupled_mode coupling"
3434	printf "\n\n"
3435	echo "coupled_run $iia $iio" > runfile_atmos
3436	fi
3437	poe ./a.out $ROPTS < runfile_atmos
3438	fi
3439	else
3440	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
3441	then
3442	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3443	elif [[ $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibmy ]]
3444	then
3445	if [[ -f $hostfile ]]
3446	then
3447	cp $hostfile hostfile
3448	else
3449	(( ii = 1 ))
3450	while (( ii <= $numprocs ))
3451	do
3452	echo $localhost_realname >> hostfile
3453	(( ii = ii + 1 ))
3454	done
3455	fi
3456	export MP_HOSTFILE=hostfile
3457	if [[ $run_coupled_model = false ]]
3458	then
3459	if [[ "$ocean_file_appendix" = true ]]
3460	then
3461	echo "precursor_ocean" > runfile_atmos
3462	else
3463	echo "precursor_atmos" > runfile_atmos
3464	fi
3465	else
3466	(( iia = $numprocs_atmos / $threads_per_task ))
3467	(( iio = $numprocs_ocean / $threads_per_task ))
3468	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3469	printf "\n using $coupled_mode coupling"
3470	printf "\n\n"
3471	echo "coupled_run $iia $iio" > runfile_atmos
3472	fi
3473	if [[ $localhost = ibmy ]]
3474	then
3475	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3476	else
3477	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
3478	fi
3479
3480	else
3481	if [[ "$host_file" = "" ]]
3482	then
3483	printf "\n +++ no hostfile given in configuration file"
3484	locat=config_file
3485	exit
3486	else
3487	eval host_file=$host_file
3488	fi
3489	export MP_HOSTFILE=$host_file
3490	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3491	fi
3492	fi
3493	elif [[ $host = nech \|\| $host = necriam ]]
3494	then
3495	(( ii = nodes ))
3496	if [[ $ii = 1 ]]
3497	then
3498	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3499	export MPIPROGINF=YES
3500	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3501	echo "*** execution on single node with mpirun"
3502	mpirun -np $numprocs ./a.out $ROPTS
3503	else
3504	(( i = 0 ))
3505	while (( i < ii ))
3506	do
3507	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3508	(( i = i + 1 ))
3509	done
3510
3511	echo "#!/bin/sh" > mpi_exec_shell
3512	echo " " >> mpi_exec_shell
3513	echo "set -u" >> mpi_exec_shell
3514	echo "F_ERRCNT=0" >> mpi_exec_shell
3515	echo "MPIPROGINV=YES" >> mpi_exec_shell
3516	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3517	echo "cpurest=$cpurest" >> mpi_exec_shell
3518	echo "fname=$fname" >> mpi_exec_shell
3519	echo "localhost=$localhost" >> mpi_exec_shell
3520	echo "return_addres=$return_addres" >> mpi_exec_shell
3521	echo "return_username=$return_username" >> mpi_exec_shell
3522	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3523	echo "write_binary=$write_binary" >> mpi_exec_shell
3524	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3525	echo " " >> mpi_exec_shell
3526	echo "export F_ERRCNT" >> mpi_exec_shell
3527	echo "export MPIPROGINV" >> mpi_exec_shell
3528	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3529	echo "export cpurest" >> mpi_exec_shell
3530	echo "export fname" >> mpi_exec_shell
3531	echo "export localhost" >> mpi_exec_shell
3532	echo "export return_addres" >> mpi_exec_shell
3533	echo "export return_username" >> mpi_exec_shell
3534	echo "export tasks_per_node" >> mpi_exec_shell
3535	echo "export write_binary" >> mpi_exec_shell
3536	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3537	echo " " >> mpi_exec_shell
3538	echo "exec ./a.out" >> mpi_exec_shell
3539
3540	chmod u+x mpi_exec_shell
3541	export MPIPROGINF=YES
3542	mpirun -f multinode_config &
3543	wait
3544
3545	fi
3546	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
3547	then
3548
3549	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3550	# DOES NOT EXIST
3551	if [[ $host != lcsgih && $host != lcsgib && $host != lckyuh && $host != lckyut ]]
3552	then
3553	if [[ -f $hostfile ]]
3554	then
3555	cp $hostfile hostfile
3556	(( ii = $numprocs / $threads_per_task ))
3557	else
3558	(( ii = 1 ))
3559	while (( ii <= $numprocs / $threads_per_task ))
3560	do
3561	echo $localhost_realname >> hostfile
3562	(( ii = ii + 1 ))
3563	done
3564	fi
3565	eval zeile=\"`head -n $ii hostfile`\"
3566	printf "\n *** running on: $zeile"
3567	fi
3568
3569	(( ii = $numprocs / $threads_per_task ))
3570	export OMP_NUM_THREADS=$threads_per_task
3571	# echo "*** OMP_NUM_THREADS=$OMP_NUM_THREADS"
3572	if [[ $threads_per_task != 1 ]]
3573	then
3574	# increase stack size to unlimited, because large runs
3575	# may abort otherwise
3576	ulimit -Ss unlimited
3577	printf "\n threads per task: $threads_per_task stacksize: unlimited"
3578	fi
3579	if [[ $run_coupled_model = false ]]
3580	then
3581	if [[ "$ocean_file_appendix" = true ]]
3582	then
3583	echo "precursor_ocean" > runfile_atmos
3584	else
3585	echo "precursor_atmos" > runfile_atmos
3586	fi
3587	printf "\n\n"
3588	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3589	then
3590	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3591	then
3592	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3593	# export MPI_DSM_DISTRIBUTE=1
3594	# MPI_DSM_CPULIST: pin MPI processes to cores
3595	if [[ $use_openmp = false ]]
3596	then
3597	if [[ "$sgi_feature" = ice2 ]]
3598	then
3599	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
3600	else
3601	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3602	fi
3603	else
3604	unset MPI_DSM_CPULIST
3605	fi
3606	# MPI_IB_RAILS: use both IB rails on ICE2
3607	export MPI_BUFS_PER_HOST=512
3608	export MPI_IB_RAILS=2
3609	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3610	export MPI_CONNECTIONS_THRESHOLD=8192
3611	# echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
3612	export MPI_TYPE_DEPTH=20
3613	# echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
3614	export MPI_GROUP_MAX=64
3615	# echo "*** MPI_GROUP_MAX=$MPI_GROUP_MAX"
3616	if [[ $use_openmp = true ]]
3617	then
3618	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3619	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3620	else
3621	mpiexec_mpt -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3622	fi
3623
3624	# next is test for openmp usage
3625	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3626	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
3627	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3628	then
3629	export MV2_NUM_PORTS=2
3630	# The default setting of MV2_CPU_MAPPING gives best results
3631	# export MV2_ENABLE_AFFINITY=1
3632	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3633	# if [[ "$sgi_feature" = ice2 ]]
3634	# then
3635	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
3636	# else
3637	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3638	# fi
3639	if [[ $use_openmp = true ]]
3640	then
3641	unset MV2_CPU_MAPPING
3642	export MV2_ENABLE_AFFINITY=0
3643	fi
3644	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
3645	echo "*** MV2_ENABLE_AFFINITY=$MV2_ENABLE_AFFINITY"
3646	if [[ $use_openmp = true ]]
3647	then
3648	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3649	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3650	else
3651	mpiexec -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3652	fi
3653	elif [[ "$mpilib" = impi ]]
3654	then
3655	echo "mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos"
3656	mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos
3657	fi
3658	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3659	then
3660	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3661	elif [[ $host = lcflow ]]
3662	then
3663	mpiexec -machinefile $TMPDIR/machines -n $ii -env I_MPI_FABRICS shm:ofa a.out < runfile_atmos $ROPTS
3664	elif [[ $host = lcsb ]]
3665	then
3666	mpirun_rsh -hostfile $PBS_NODEFILE -np `cat $PBS_NODEFILE \| wc -l` a.out < runfile_atmos $ROPTS
3667	elif [[ $host = lckiaps ]]
3668	then
3669	mpirun -np $ii -f $PBS_NODEFILE a.out < runfile_atmos $ROPTS
3670	elif [[ $host = lckyu* ]]
3671	then
3672	mpiexec -n $ii --stdin runfile_atmos ./a.out $ROPTS
3673	else
3674	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3675	fi
3676	else
3677
3678	# currently there is no full MPI-2 support on ICE and XT4
3679	(( iia = $numprocs_atmos / $threads_per_task ))
3680	(( iio = $numprocs_ocean / $threads_per_task ))
3681	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3682	printf "\n using $coupled_mode coupling"
3683	printf "\n\n"
3684
3685	if [[ $coupled_mode = "mpi2" ]]
3686	then
3687	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3688	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3689	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3690	then
3691
3692	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3693	then
3694	# export MPI_LAUNCH_TIMEOUT=360
3695	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3696	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3697	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3698	then
3699	# ulimit -s 300000 # A too large stack size causes problems
3700	# export MV2_NUM_PORTS=2
3701	# export MV2_CPU_MAPPING=0:1:2:3
3702	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3703	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3704	fi
3705
3706	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3707	then
3708
3709	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3710	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3711
3712	else
3713	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3714	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3715	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3716	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3717	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3718	fi
3719	wait
3720
3721	else
3722
3723	echo "coupled_run $iia $iio" > runfile_atmos
3724	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3725	then
3726
3727	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3728	then
3729	# export MPI_LAUNCH_TIMEOUT=360
3730	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3731	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3732	then
3733	# ulimit -s 300000 # A too large stack size causes problems
3734	# export MV2_NUM_PORTS=2
3735	# export MV2_CPU_MAPPING=0:1:2:3
3736	mpiexec ./a.out $ROPTS < runfile_atmos
3737	fi
3738
3739	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3740	then
3741
3742	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3743
3744	elif [[ $host = lck \|\| $host = lckordi ]]
3745	then
3746
3747	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3748
3749	elif [[ $host = lckyu* ]]
3750	then
3751
3752	mpiexec -n $ii --stdin runfile_atmos ./a.out $ROPTS
3753
3754	fi
3755	wait
3756	fi
3757
3758	fi
3759	elif [[ $host = lckyoto ]]
3760	then
3761	set -xv
3762	export P4_RSHCOMMAND=plesh
3763	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
3764	if [[ "$ENVIRONMENT" = BATCH ]]
3765	then
3766	if [[ "$cond2" = fujitsu ]]
3767	then
3768	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
3769	elif [[ "cond2" = pgi ]]
3770	then
3771	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
3772	else
3773	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
3774	fi
3775	else
3776	if [[ "$cond2" = "" ]]
3777	then
3778	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
3779	else
3780	mpirun -np $numprocs ./a.out $ROPTS
3781	fi
3782	fi
3783	set +xv
3784	elif [[ $host = lctit ]]
3785	then
3786	export OMP_NUM_THREADS=$threads_per_task
3787	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3788	if [[ "$threads_per_task" != 1 ]]
3789	then
3790	export MV2_ENABLE_AFFINITY=0
3791	fi
3792	echo "----- PBS_NODEFILE content:"
3793	cat $PBS_NODEFILE
3794	echo "-----"
3795	(( ii = $numprocs / $threads_per_task ))
3796	echo "mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS"
3797	mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS
3798	else
3799	mpprun -n $numprocs a.out $ROPTS
3800	fi
3801	[[ $? != 0 ]] && execution_error=true
3802
3803
3804	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3805	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3806	then
3807	apprentice
3808	fi
3809	else
3810	a.out $ROPTS
3811	fi
3812	fi
3813	if [[ $? != 0 \|\| $execution_error = true ]]
3814	then
3815
3816	# ABBRUCH BEI LAUFZEITFEHLER
3817	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3818	printf "\n +++ runtime error occured"
3819	locat=execution
3820	exit
3821	else
3822	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3823	printf "\n$striche\n *** execution finished \n"
3824
3825	# Stop the dvr streaming server and process the dvr output in order
3826	# to create dvrs- and html-files containing all streams
3827	if [[ "$dvrserver_id" != "" ]]
3828	then
3829	kill $dvrserver_id
3830	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3831
3832	# If there is a directory, data have been output by the
3833	# streaming server. Otherwise, user has chosen dvrp_output=local
3834	if [[ -d DATA_DVR ]]
3835	then
3836
3837	# Add the current dvr configuration file to the dvr output
3838	# directory
3839	cp .dvrserver.config DATA_DVR
3840
3841	# Process the dvr output (option -s for also generating
3842	# sequence mode data)
3843	process_dvr_output -d DATA_DVR -f $fname -s
3844
3845	else
3846
3847	# Process the local output
3848	process_dvr_output -l -d DATA_DVR -f $fname
3849
3850	fi
3851
3852	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3853	then
3854
3855	# Process dvr output generated in local mode (dvrp_output=local)
3856	process_dvr_output -l -d DATA_DVR -f $fname
3857
3858	fi
3859	fi
3860
3861
3862
3863	# Call of combine_plot_fields in order to merge single files written
3864	# by each PE into one file.
3865	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
3866	then
3867	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
3868	printf "\n 2d- and/or 3d-data may be incomplete!"
3869	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
3870	elif [[ "$combine_plot_fields" == true ]]
3871	then
3872	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
3873	combine_plot_fields${block}.x
3874	else
3875	# Temporary solution to skip combine_plot_fields. This is necessary in case of huge amount of
3876	# data output. To do: extend this branch by creating a batch job for combine_plot_fields.
3877	printf "\n\n\n *** post-processing: skipping combine_plot_fields (-Z option set) ..."
3878	fi
3879
3880
3881
3882	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3883	(( i = 0 ))
3884	while (( i < ioc ))
3885	do
3886	(( i = i + 1 ))
3887	if (( i == 1 ))
3888	then
3889	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
3890	fi
3891	printf "\n >>> ${out_command[$i]}"
3892	eval ${out_command[$i]}
3893	if (( i == ioc ))
3894	then
3895	printf "\n$striche\n"
3896	fi
3897	done
3898
3899
3900	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
3901	if [[ $do_trace = true ]]
3902	then
3903	printf "\n\n"
3904	ls -al
3905	fi
3906
3907
3908
3909	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
3910	(( i = 0 ))
3911	while (( i < iout ))
3912	do
3913	(( i = i + 1 ))
3914	if (( i == 1 ))
3915	then
3916	printf "\n\n *** saving OUTPUT-files:\n$striche"
3917	fi
3918
3919	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3920	files_for_pes=false; filetyp=file
3921	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
3922	then
3923	files_for_pes=true; filetyp=directory
3924	actionout[$i]=""
3925	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
3926	then
3927	actionout[$i]=""
3928	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
3929	then
3930	files_for_pes=true; filetyp=directory
3931	actionout[$i]="ar"
3932	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
3933	then
3934	actionout[$i]="ar"
3935	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
3936	then
3937	files_for_pes=true; filetyp=directory
3938	actionout[$i]="fl"
3939	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
3940	then
3941	actionout[$i]="fl"
3942	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
3943	then
3944	files_for_pes=true; filetyp=directory
3945	actionout[$i]="tr"
3946	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
3947	then
3948	actionout[$i]="tr"
3949	fi
3950
3951	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
3952	then
3953	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
3954	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
3955	then
3956	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
3957	else
3958
3959
3960	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3961	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3962	# REMOTE-RECHNUNGEN
3963	if [[ "${actionout[$i]}" = tr ]]
3964	then
3965	if [[ $localhost != $fromhost ]]
3966	then
3967	if [[ $files_for_pes = false ]]
3968	then
3969	cps=""
3970	cst=""
3971	else
3972	cps=-c
3973	cst="/"
3974	fi
3975	if [[ $localhost = nech ]]
3976	then
3977
3978	# TRANSFER IN EIGENSTAENDIGEM JOB
3979	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3980	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3981	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3982	if [[ $files_for_pes = false ]]
3983	then
3984	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3985	else
3986	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
3987	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
3988	fi
3989
3990	echo "set -x" > transfer_${localout[$i]}
3991	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3992
3993	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
3994	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
3995	printf "\n or higher cycle\n"
3996	echo "batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3997
3998	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3999
4000	if [[ $localhost = nech ]]
4001	then
4002	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
4003	else
4004	if [[ "$LOGNAME" = b323013 ]]
4005	then
4006	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4007	else
4008	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4009	fi
4010	fi
4011
4012	else
4013
4014	# TRANSFER INNERHALB DIESES JOBS
4015	transfer_failed=false
4016	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
4017	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
4018	batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4019	[[ $? != 0 ]] && transfer_failed=true
4020
4021	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4022	# LOKALER MASCHINE ANLEGEN
4023	if [[ $transfer_failed = true ]]
4024	then
4025	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4026	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4027
4028	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4029	# ANLEGEN.
4030	eval local_catalog=${pathout[$i]}
4031	if [[ ! -d $local_catalog ]]
4032	then
4033	printf " *** local directory does not exist. Trying to create:\n"
4034	printf " $local_catalog \n"
4035	mkdir -p $local_catalog
4036	fi
4037	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4038	transfer_problems=true
4039	fi
4040	fi
4041	else
4042
4043	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
4044	actionout[$i]=""
4045	fi
4046	fi
4047
4048
4049	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
4050	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
4051	# REMOTE-RECHNUNGEN
4052	if [[ "${actionout[$i]}" = tra ]]
4053	then
4054	if [[ $localhost != $fromhost ]]
4055	then
4056	if [[ $localhost = ibmh \|\| $localhost = nech ]]
4057	then
4058
4059	# TRANSFER IN EIGENSTAENDIGEM JOB
4060	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4061	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4062	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4063	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4064
4065	echo "set -x" > transfer_${localout[$i]}
4066	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4067
4068	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
4069	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
4070	printf "\n or higher cycle\n"
4071	echo "batch_scp $PORTOPT -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4072
4073	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4074
4075	if [[ $localhost = nech ]]
4076	then
4077	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
4078	else
4079	if [[ $LOGNAME = b323013 ]]
4080	then
4081	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4082	else
4083	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4084	fi
4085	fi
4086
4087	else
4088
4089	# TRANSFER INNERHALB DIESES JOBS
4090	transfer_failed=false
4091	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
4092	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
4093	batch_scp $PORTOPT -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4094	[[ $? != 0 ]] && transfer_failed=true
4095
4096	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4097	# LOKALER MASCHINE ANLEGEN
4098	if [[ $transfer_failed = true ]]
4099	then
4100	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4101	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4102
4103	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4104	# ANLEGEN
4105	eval local_catalog=${pathout[$i]}
4106	if [[ ! -d $local_catalog ]]
4107	then
4108	printf " *** local directory does not exist. Trying to create:\n"
4109	printf " $local_catalog \n"
4110	mkdir -p $local_catalog
4111	fi
4112
4113	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4114	transfer_problems=true
4115	fi
4116	fi
4117	else
4118
4119	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
4120	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
4121	actionout[$i]=a
4122	fi
4123	fi
4124
4125
4126	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
4127	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
4128	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
4129	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
4130	if [[ "${actionout[$i]}" = fl ]]
4131	then
4132	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4133	chmod g+rx $tmp_data_catalog
4134	if [[ $files_for_pes = false ]]
4135	then
4136	printf "\n >>> OUTPUT: ${localout[$i]} to"
4137	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4138	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
4139	else
4140	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
4141	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4142	mkdir $tmp_data_catalog/${frelout[$i]}
4143	cd ${localout[$i]}
4144	for file in $(ls *)
4145	do
4146	ln -f $file $tmp_data_catalog/${frelout[$i]}
4147	done
4148	cd $TEMPDIR
4149	fi
4150
4151
4152	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
4153	if [[ $store_on_archive_system = true ]]
4154	then
4155
4156	if [[ $archive_system = asterix ]]
4157	then
4158	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4159	if [[ $files_for_pes = false ]]
4160	then
4161	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4162	else
4163	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4164	fi
4165	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4166	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
4167	echo "then" >> archive_${frelout[$i]}
4168	echo " do_stageout=false" >> archive_${frelout[$i]}
4169	echo "else" >> archive_${frelout[$i]}
4170	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
4171	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
4172	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
4173	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
4174	if [[ $files_for_pes = false ]]
4175	then
4176	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
4177	else
4178	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
4179	fi
4180	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
4181	echo "fi" >> archive_${frelout[$i]}
4182	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4183	elif [[ $archive_system = DMF ]]
4184	then
4185	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4186	if [[ $files_for_pes = false ]]
4187	then
4188	printf "\n +++ archiving of single files impossible with $archive_system !\n"
4189	locat=DMF
4190	exit
4191	else
4192	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
4193	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
4194	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
4195	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
4196	fi
4197	elif [[ $archive_system = tivoli ]]
4198	then
4199	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4200	if [[ $files_for_pes = false ]]
4201	then
4202	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4203	echo "set -x" >> archive_${frelout[$i]}
4204	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4205	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4206	else
4207
4208	echo "set -x" >> archive_${frelout[$i]}
4209	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
4210	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4211	cd $tmp_data_catalog
4212	all_files=`ls -1 ${frelout[$i]}/*`
4213	cd - > /dev/null
4214	(( inode = 0 ))
4215	(( tp1 = tasks_per_node + 1 ))
4216	while (( inode < nodes ))
4217	do
4218	# echo "*** all_files = \"$all_files\" "
4219	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4220	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4221	# echo "*** tasks_per_node = \"$tasks_per_node\" "
4222	# echo "*** files = \"$files\" "
4223	# echo "*** all_files = \"$all_files\" "
4224	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4225	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4226	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
4227	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4228	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4229	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4230	(( inode = inode + 1 ))
4231	done
4232	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4233	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4234	fi
4235	elif [[ $archive_system = ut ]]
4236	then
4237	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4238	if [[ $files_for_pes = false ]]
4239	then
4240	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4241	echo "set -x" >> archive_${frelout[$i]}
4242	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4243	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4244	else
4245
4246	echo "set -x" >> archive_${frelout[$i]}
4247	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
4248	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
4249	cd $tmp_data_catalog
4250	all_files=`ls -1 ${frelout[$i]}/*`
4251	cd - > /dev/null
4252	(( inode = 0 ))
4253	(( tp1 = tasks_per_node + 1 ))
4254	while (( inode < nodes ))
4255	do
4256	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4257	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4258	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4259	(( inode = inode + 1 ))
4260	done
4261	fi
4262	elif [[ $archive_system = none ]]
4263	then
4264	printf " +++ archiving on $localhost not available!\n"
4265	fi
4266
4267	if [[ $archive_system != none ]]
4268	then
4269	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
4270	then
4271	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4272	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4273	elif [[ $localhost = nech ]]
4274	then
4275	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
4276	fi
4277	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4278	fi
4279	else
4280	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
4281	fi
4282
4283
4284	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
4285	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4286	if [[ $files_for_pes = false ]]
4287	then
4288	cat /dev/null > ${pathout[$i]}
4289	else
4290	mkdir -p ${pathout[$i]}
4291	fi
4292
4293	fi
4294
4295
4296	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
4297	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
4298	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4299	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
4300	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
4301	# GEMAESSEN ARCHIVIERUNGEN GESETZT
4302	if [[ "${actionout[$i]}" = ar ]]
4303	then
4304	if [[ $files_for_pes = false ]]
4305	then
4306	printf "\n >>> OUTPUT: ${localout[$i]} to"
4307	printf "\n ${pathout[$i]}"
4308	printf "\n File will be copied to archive-system ($archive_system) !\n"
4309	else
4310	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
4311	printf "\n ${pathout[$i]}"
4312	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
4313	fi
4314	mv ${localout[$i]} ${frelout[$i]}
4315
4316	file_saved=false
4317
4318	if [[ $archive_system = asterix ]]
4319	then
4320	do_stageout=true
4321	(( stageout_anz = 0 ))
4322	while [[ $do_stageout = true ]]
4323	do
4324	if [[ $files_for_pes = false ]]
4325	then
4326	stageout ${frelout[$i]} > STAGE_OUTPUT
4327	else
4328	stageout -t ${frelout[$i]} > STAGE_OUTPUT
4329	fi
4330	cat STAGE_OUTPUT
4331	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
4332	then
4333	file_saved=true
4334	do_stageout=false
4335	else
4336	if [[ $files_for_pes = false ]]
4337	then
4338	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
4339	else
4340	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
4341	fi
4342	(( stageout_anz = stageout_anz + 1 ))
4343	if (( stageout_anz == 10 ))
4344	then
4345	printf "\n +++ stoped after 10 unsuccessful tries!"
4346	archive_save=false
4347	do_stageout=false
4348	else
4349	printf "\n *** new try to store on archive after 15 min:"
4350	sleep 900
4351	fi
4352	fi
4353	done
4354	elif [[ $archive_system = DMF ]]
4355	then
4356	if [[ $files_for_pes = false ]]
4357	then
4358	printf "\n +++ archiving of single files impossible on $archive_system!\n"
4359	locat=DMF
4360	exit
4361	else
4362	rm -rf $ARCHIVE/${frelout[$i]}
4363	cp -r ${frelout[$i]} $ARCHIVE
4364	fi
4365	file_saved=true
4366	elif [[ $archive_system = tivoli ]]
4367	then
4368	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4369	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4370	# GELEGT WERDEN
4371	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4372	chmod g+rx $tmp_data_catalog
4373	if [[ $files_for_pes = false ]]
4374	then
4375	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4376	else
4377	mkdir $tmp_data_catalog/${frelout[$i]}
4378	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4379	fi
4380
4381	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4382	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4383	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4384	if [[ $files_for_pes = false ]]
4385	then
4386	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4387	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4388	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4389	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4390	else
4391	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4392	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4393	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4394	fi
4395
4396	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4397	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4398	file_saved=true
4399
4400	elif [[ $archive_system = ut ]]
4401	then
4402	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4403	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4404	# GELEGT WERDEN
4405	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4406	chmod g+rx $tmp_data_catalog
4407	if [[ $files_for_pes = false ]]
4408	then
4409	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4410	else
4411	mkdir $tmp_data_catalog/${frelout[$i]}
4412	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4413	fi
4414
4415	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4416	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4417	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4418	if [[ $files_for_pes = false ]]
4419	then
4420	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4421	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4422	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4423	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4424	else
4425	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4426	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4427	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4428	fi
4429
4430	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
4431	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4432	file_saved=true
4433
4434	else
4435	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
4436	archive_save=false
4437	fi
4438	if [[ $file_saved = true ]]
4439	then
4440	if [[ $files_for_pes = false ]]
4441	then
4442	cat /dev/null > ${pathout[$i]}
4443	else
4444	mkdir -p ${pathout[$i]}
4445	fi
4446	fi
4447	fi
4448
4449	# APPEND AUF LOKALER MASCHINE
4450	if [[ "${actionout[$i]}" = "a" ]]
4451	then
4452	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4453	then
4454	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}.${extout[$i]}\n"
4455	cat ${localout[$i]} >> ${pathout[$i]}.${extout[$i]}
4456	else
4457	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
4458	cat ${localout[$i]} >> ${pathout[$i]}
4459	fi
4460	fi
4461
4462	# KOPIEREN AUF LOKALER MASCHINE
4463	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
4464	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
4465	then
4466
4467	# KOPIEREN AUF EINPROZESSORMASCHINE
4468	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4469	then
4470	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
4471	if [[ $link_local_output = true ]]
4472	then
4473	printf " using ln -f\n"
4474	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4475	fi
4476	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4477	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
4478	then
4479	if [[ $link_local_output = true ]]
4480	then
4481	printf " ln failed, using cp...\n"
4482	fi
4483	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4484	fi
4485	else
4486	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
4487	if [[ $link_local_output = true ]]
4488	then
4489	printf " using ln -f\n"
4490	ln -f ${localout[$i]} ${pathout[$i]}
4491	fi
4492	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4493	if [[ ! -f "${pathout[$i]}" ]]
4494	then
4495	if [[ $link_local_output = true ]]
4496	then
4497	printf " ln failed, using cp...\n"
4498	fi
4499	cp ${localout[$i]} ${pathout[$i]}
4500	fi
4501	fi
4502
4503	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
4504	then
4505
4506	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
4507	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
4508	# WIRD DANN KOPIERT
4509	# PER MOVE UMBENANNT WERDEN
4510	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4511	if [[ $link_local_output = true ]]
4512	then
4513	printf " using ln -f\n"
4514	mkdir ${pathout[$i]}
4515	cd ${localout[$i]}
4516	for file in $(ls *)
4517	do
4518	ln -f $file ${pathout[$i]}
4519	done
4520	cd $TEMPDIR
4521	fi
4522	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4523	if [[ ! -f "${pathout[$i]}/_0000" ]]
4524	then
4525	if [[ $link_local_output = true ]]
4526	then
4527	printf " ln failed for .../_0000, using cp...\n"
4528	fi
4529	cp -r ${localout[$i]} ${pathout[$i]}
4530	fi
4531
4532	fi
4533	fi
4534	done
4535	if (( i != 0 ))
4536	then
4537	if [[ $transfer_problems = true ]]
4538	then
4539	printf "\n$striche\n *** OUTPUT-files saved"
4540	printf "\n +++ WARNING: some data transfers failed! \n"
4541	else
4542	printf "\n$striche\n *** all OUTPUT-files saved \n"
4543	fi
4544	fi
4545
4546
4547	# EVENTUELL FOLGEJOB STARTEN
4548	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4549	if [[ -f CONTINUE_RUN ]]
4550	then
4551
4552	if [[ $archive_save = true ]]
4553	then
4554
4555	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4556	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4557	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4558	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4559	# HANDEN
4560	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4561	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4562	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4563	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4564	then
4565	mc=`echo $mc \| sed 's/#/f/g'`
4566	fi
4567
4568
4569	# JOB STARTEN
4570	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4571	echo " $mc"
4572	printf "\n$striche\n"
4573	if [[ $localhost != $fromhost ]]
4574	then
4575
4576	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibms \|\| $localhost = lcflow \|\| $localhost = lckyu* ]]
4577	then
4578	echo "*** ssh will be used to initiate restart-runs!"
4579	echo " return_addres=\"$return_addres\" "
4580	echo " return_username=\"$return_username\" "
4581	if [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4582	then
4583	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4584	else
4585	if [[ $localhost = ibmkisti ]]
4586	then
4587	ssh $SSH_PORTOPT $usern@gaiad "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4588	else
4589	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4590	fi
4591	fi
4592	else
4593	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4594	locat=restart; exit
4595	fi
4596
4597	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4598	# DER AKTUELLE JOB ENDET
4599	if [[ $queue = special1q ]]
4600	then
4601	sleep 120
4602	else
4603	sleep 30
4604	fi
4605
4606	else
4607
4608	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4609	# RUFEN WERDEN, AUSSER AUF lcfimm
4610	cd $LOCAL_PWD
4611	if [[ $localhost = lcfimm ]]
4612	then
4613	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4614	elif [[ $localhost = lckyuh ]]
4615	then
4616	printf "\n +++ WARNING: no restart mechanism available for host \"$localhost\" "
4617	printf "\n please restart job manually using command:\n"
4618	printf "\n \"$mc\" "
4619	else
4620	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4621	fi
4622	cd - > /dev/null
4623	fi
4624	if [[ $localhost = lckyuh ]]
4625	then
4626	printf "\n$striche\n *** restart-run to be initiated manually\n"
4627	else
4628	printf "\n$striche\n *** restart-run initiated \n"
4629	fi
4630
4631
4632	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4633	# GEHOLT WORDEN SIND, LOESCHEN
4634	(( i = 0 ))
4635	while (( i < iin ))
4636	do
4637	(( i = i + 1 ))
4638	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4639	then
4640	rm -r $tmp_data_catalog/${frelin[$i]}
4641	fi
4642	done
4643
4644	else
4645
4646	printf "\n +++ no restart-run possible, since errors occured"
4647	printf "\n during the archive process"
4648	fi
4649
4650	fi
4651
4652
4653
4654	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4655	if [[ "$email_notification" != "none" ]]
4656	then
4657
4658	if [[ $localhost != $fromhost ]]
4659	then
4660	if [[ -f CONTINUE_RUN ]]
4661	then
4662	echo "PALM restart run necessary" > email_text
4663	echo "description header of actual run:" >> email_text
4664	cat CONTINUE_RUN >> email_text
4665	echo "mrun-command to restart:" >> email_text
4666	echo "$mc" >> email_text
4667	else
4668	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4669	fi
4670	mail $email_notification < email_text
4671	printf "\n *** email notification sent to \"$email_notification\" "
4672	fi
4673	fi
4674
4675
4676
4677	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4678	cd $HOME
4679	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4680
4681	else
4682
4683
4684	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4685	# CHENDE AKTIONEN DURCHGEFUEHRT
4686
4687	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4688	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
4689	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4690	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4691	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4692	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4693	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4694	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4695	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4696	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4697	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4698	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4699	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4700	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4701	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4702	if [[ $use_openmp = true ]]
4703	then
4704	mrun_com=${mrun_com}" -O $threads_per_task"
4705	fi
4706	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4707	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
4708	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4709	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4710	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4711	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4712	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4713	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4714	[[ "$check_namelist_files" = false ]] && mrun_com=${mrun_com}" -z"
4715	[[ "$combine_plot_fields" = false ]] && mrun_com=${mrun_com}" -Z"
4716	[[ "$max_par_io_str" != "" ]] && mrun_com=${mrun_com}" -w $max_par_io_str"
4717	if [[ $do_remote = true ]]
4718	then
4719	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4720	fi
4721
4722
4723	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4724	jobfile=jobfile.$RANDOM
4725
4726
4727	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4728	echo "mkdir $TEMPDIR" >> $jobfile
4729	echo "cd $TEMPDIR" >> $jobfile
4730
4731
4732	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4733	if [[ $do_trace = true ]]
4734	then
4735	echo "set -x" >> $jobfile
4736	else
4737	echo "set +vx" >> $jobfile
4738	fi
4739
4740
4741	# initialize the environment and load modules
4742	if [[ "$init_cmds" != "" ]]
4743	then
4744	echo "$init_cmds" >> $jobfile
4745	fi
4746	if [[ "$module_calls" != "" ]]
4747	then
4748	echo "$module_calls" >> $jobfile
4749	fi
4750
4751
4752	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4753	# DATEI FUER DEN JOB
4754	if [[ $( echo $host \| cut -c1-5 ) = lcsgi \|\| $host = ibmkisti ]]
4755	then
4756
4757	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4758	# KOPIEREN
4759	if [[ $restart_run != true ]]
4760	then
4761	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4762	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4763	fi
4764
4765	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4766	# (BEI JOBS AUF LOKALEM RECHNER REICHT CP)
4767	echo "set -x" >> $jobfile
4768	if [[ $host = $localhost ]]
4769	then
4770	echo "cp -r $working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4771	else
4772	if [[ $host != ibmkisti ]]
4773	then
4774	echo "scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4775	else
4776	# on KISTI's IBM firewall is only opened on interactive node
4777	echo "localdir=\`pwd\`" >> $jobfile
4778	echo "ssh $SSH_PORTOPT $remote_username@gaiad \"cd \$localdir; scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
4779	fi
4780	fi
4781	echo "export SOURCES_COMPLETE=true" >> $jobfile
4782
4783	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4784	# ARBEITSVERZEICHNIS VERSCHIEBEN
4785	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4786	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4787	echo "execute_mrun=true" >> $jobfile
4788	echo " " >> $jobfile
4789
4790	else
4791
4792	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4793	# SOWIE GEGEBENENFALLS DES MAKEFILES
4794	if [[ $do_compile = true ]]
4795	then
4796
4797	source_catalog=SOURCES_FOR_RUN_$fname
4798
4799	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4800	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4801	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4802	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4803	echo "export SOURCES_COMPLETE=true" >> $jobfile
4804	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4805
4806	for filename in $source_list
4807	do
4808	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4809	echo "cat > $filename << \"%END%\"" >> $jobfile
4810	cat $source_catalog/$filename >> $jobfile
4811	echo " " >> $jobfile
4812	echo "%END%" >> $jobfile
4813	echo " " >> $jobfile
4814	done
4815
4816	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4817	echo "cat > Makefile << \"%END%\"" >> $jobfile
4818	cat $source_catalog/Makefile >> $jobfile
4819	echo " " >> $jobfile
4820	echo "%END%" >> $jobfile
4821	echo " " >> $jobfile
4822
4823	echo "cd - > /dev/null" >> $jobfile
4824
4825	fi
4826
4827
4828	# ABSPEICHERN DER KONFIGURATIONSDATEI
4829	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4830	# Lines with #$ coming from the svn keyword substitution are
4831	# removed from the config file in order to avoid problems
4832	# with the SGE batch system
4833	echo "cat > $config_file << \"%END%\"" >> $jobfile
4834	if [[ $host = lckyuh ]]
4835	then
4836	# no cross compiler on compute node
4837	sed 's/frtpx/frt/g' $config_file >> $jobfile
4838	else
4839	sed 's/#$.*//g' $config_file >> $jobfile
4840	fi
4841	echo "%END%" >> $jobfile
4842	echo " " >> $jobfile
4843
4844
4845	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
4846	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4847	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
4848	if [[ $host = lckyuh ]]
4849	then
4850	sed 's/\/bin\/ksh/\/bin\/bash/g' ${PALM_BIN}/$mrun_script_name >> $jobfile
4851	else
4852	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
4853	fi
4854	echo "%END%" >> $jobfile
4855	echo "chmod u+x $mrun_script_name" >> $jobfile
4856	echo "execute_mrun=true" >> $jobfile
4857	echo " " >> $jobfile
4858
4859	fi
4860
4861
4862	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
4863	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
4864	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
4865	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
4866	if [[ $do_remote = true ]]
4867	then
4868	(( i = 0 ))
4869	while (( i < iin ))
4870	do
4871	(( i = i + 1 ))
4872	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
4873	if [[ "${transin[$i]}" = job ]]
4874	then
4875	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
4876	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
4877	echo " " >> $jobfile
4878	echo "%END%" >> $jobfile
4879	else
4880	echo "batch_scp $PORTOPT -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
4881	fi
4882
4883	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
4884	echo "if [[ \$? = 1 ]]" >> $jobfile
4885	echo "then" >> $jobfile
4886	echo " echo \" \" " >> $jobfile
4887	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
4888	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
4889	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
4890	echo " execute_mrun=false" >> $jobfile
4891	echo "fi" >> $jobfile
4892	done
4893	fi
4894
4895	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
4896	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
4897	echo "LOCAL_PWD=$working_directory" >> $jobfile
4898	echo "export LOCAL_PWD" >> $jobfile
4899
4900	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
4901	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
4902	echo "export LOCAL_MRUN_PATH" >> $jobfile
4903
4904	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
4905	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
4906	then
4907	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
4908	elif [[ $host = lcflow \|\| $localhost = lcflow ]]
4909	then
4910	echo "export PALM_BIN=$PALM_BIN" \| sed -e 's:'$HOME':$HOME:' >> $jobfile
4911	echo "export PATH=\$PATH:\$PALM_BIN" >> $jobfile
4912	fi
4913
4914	# MRUN AUF ZIELRECHNER AUFRUFEN (queue is workaround for ibmkisti)
4915	echo "set -x" >> $jobfile
4916	echo "queue=$queue" >> $jobfile
4917	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
4918	echo 'ls -al; echo `pwd`' >> $jobfile
4919	echo "cd \$HOME" >> $jobfile
4920	echo "rm -rf $TEMPDIR" >> $jobfile
4921
4922
4923
4924
4925	# JOB PER SUBJOB STARTEN
4926	if [[ $silent = false ]]
4927	then
4928	printf "\n "
4929	else
4930	printf "\n\n"
4931	fi
4932
4933	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $PORTOPT $jobfile
4934	rm -rf $jobfile
4935
4936
4937	fi # ENDE REMOTE-TEIL
4938
4939
4940
4941	# ENDE DER PROZEDUR

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