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source: palm/trunk/SCRIPTS/mrun @ 1107

Last change on this file since 1107 was 1107, checked in by raasch, 11 years ago
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1	#!/bin/ksh
2
3	# mrun - script for running PALM jobs
4
5	#--------------------------------------------------------------------------------#
6	# This file is part of PALM.
7	#
8	# PALM is free software: you can redistribute it and/or modify it under the terms
9	# of the GNU General Public License as published by the Free Software Foundation,
10	# either version 3 of the License, or (at your option) any later version.
11	#
12	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
13	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
14	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
15	#
16	# You should have received a copy of the GNU General Public License along with
17	# PALM. If not, see <http://www.gnu.org/licenses/>.
18	#
19	# Copyright 1997-2012 Leibniz University Hannover
20	#--------------------------------------------------------------------------------#
21	#
22	# Current revisions:
23	# ------------------
24	#
25	#
26	# Former revisions:
27	# -----------------
28	# $Id: mrun 1107 2013-03-04 06:23:14Z raasch $
29	#
30	# 1106 2013-03-04 05:31:38Z raasch
31	# --stdin argument for mpiexec on lckyuh
32	# -y and -Y settings output to header
33	#
34	# 1103 2013-02-20 02:15:53Z raasch
35	# default script runs again under ksh, because of unsolved problems with read
36	# from stdin: when bash script is called from a ksh, message "read error: 0:
37	# Resource temporarily unavailable" appears and script does not stop,
38	# further bash compatibility adjustments,
39	# shebang line replaced by /bin/bash when running jobs on lckyuh; no restarts
40	# on lckyuh, but mrun does not terminate and issues a warning instead
41	#
42	# 1101 2013-02-17 10:20:21Z raasch
43	# script now running under bash instead of ksh, which required small adjustments
44	# (output formatting with printf instead "typeset -L/-R", print replaced by echo,
45	# read from stdin),
46	# cross compilername on lckyuh compute nodes replaced by real compiler name
47	#
48	# 1099 2013-02-10 01:47:43Z raasch
49	# adjustments for Kyushu-University computing center (lckyuh - hayaka)
50	# and for Forwind cluster (lcflow)
51	# small further adjustments for lckyut
52	#
53	# 1094 2013-02-03 01:52:12Z raasch
54	# explicit ssh/scp port can be set in config file with environment variable
55	# scp_port. This port is handled to all ssh/scp/batch_scp calls.
56	# decalpha parts (yonsei) removed
57	#
58	# 2013-02-02 07:06:13Z raasch
59	# adjustments for Kyushu-University computing center (lckyut - tatara)
60	#
61	# 1083 2013-01-04 10:22:09Z maronga
62	# bugfix in parameter file check (read %cpp_options was missing)
63	#
64	# 1069 2012-11-28 16:18:43Z maronga
65	# bugfix: coupling mode was always set to mpi2, typos removed
66	#
67	# 1058 2012-11-21 07:00:35Z raasch
68	# Intel inspector (inspxe) is given the number of PEs instead of the number of
69	# nodes
70	#
71	# 1046 2012-11-09 14:38:45Z maronga
72	# code put under GPL (PALM 3.9)
73	#
74	# 21/03/94 - Siggi - first version finished
75	# 03/03/94 - Siggi - script development started
76	#
77	#--------------------------------------------------------------------------------#
78	# mrun - script for running PALM jobs
79	#--------------------------------------------------------------------------------#
80
81
82
83	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
84
85	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
86	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
87	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
88
89	AddFilenames=""
90	additional_conditions=""
91	add_source_path=""
92	afname=""
93	archive_save=true
94	archive_system=none
95	check_namelist_files=true
96	combine_plot_fields=true
97	compiler_name=""
98	cond1=""
99	cond2=""
100	config_file=.mrun.config
101	coupled_dist=""
102	coupled_mode="mpi1"
103	cpp_opts=""
104	cpp_options=""
105	cpumax=0
106	cpurest=0
107	delete_temporary_catalog=true
108	do_batch=false
109	do_compile=true
110	do_remote=false
111	do_stagein=true
112	do_stageout=true
113	do_trace=false
114	email_notification="none"
115	exclude=""
116	executable=""
117	execution_error=false
118	fimm=false
119	fname=test
120	fromhost=""
121	global_revision=""
122	group_number=none
123	host=""
124	host_file=""
125	hp=""
126	ignore_archive_error=false
127	input_list=""
128	interpreted_config_file=""
129	job_catalog="~/job_queue"
130	job_on_file=""
131	keep_data_from_previous_run=false
132	link_local_input=false
133	link_local_output=false
134	localhost_realname=$(hostname)
135	local_compile=false
136	local_dvrserver_running=.FALSE.
137	locat=normal
138	mainprog=""
139	makefile=""
140	max_par_io_str=""
141	mc=$0
142	while [[ $(echo $mc \| grep -c "/") != 0 ]]
143	do
144	mc=`echo $mc \| cut -f2- -d"/"`
145	done
146	module_calls=""
147	mrun_script_name=$mc
148	netcdf_inc=""
149	netcdf_lib=""
150	netcdf_support=false
151	node_usage=default
152	numprocs=""
153	numprocs_atmos=0
154	numprocs_ocean=0
155	OOPT=""
156	openmp=false
157	output_list=""
158	package_list=""
159	punkte="..........................................................."
160	queue=none
161	read_from_config=""
162	restart_run=false
163	if [[ `hostname` = rte10 ]]
164	then
165	return_addres=133.5.185.60
166	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
167	elif [[ `hostname` = climate0 ]]
168	then
169	return_addres=165.132.26.68
170	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
171	elif [[ `hostname` = urban00 ]]
172	then
173	return_addres=147.46.30.151
174	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
175	else
176	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
177	fi
178	return_password=""
179	return_username=$LOGNAME
180	remotecall=false
181	remote_username=""
182	run_coupled_model=false
183	run_mode=""
184	scirocco=false
185	store_on_archive_system=false
186	striche=" ----------------------------------------------------------------------------"
187	silent=false
188	source_list=""
189	source_path=SOURCE
190	tasks_per_node=""
191	threads_per_task=1
192	tmpcreate=false
193	tmp_data_catalog=""
194	transfer_problems=false
195	usern=$LOGNAME
196	use_openmp=false
197	version="MRUN 2.0 Rev$Rev: 1107 $"
198	working_directory=`pwd`
199	TOPT=""
200	XOPT=""
201	zeit=$( date \| cut -c 12-19 )
202
203	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
204	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek last_char maxcycle minuten nodes pes sekunden tp1
205
206
207
208
209	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
210	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
211
212	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
213	# EXPORTIERT WERDEN
214	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
215	export group_number input_list memory numprocs output_list queue run_mode
216
217
218
219	# FEHLERBEHANDLUNG
220	# BEI EXIT:
221	trap 'rm -rf $working_directory/tmp_mrun
222	if [[ $locat != localhost ]]
223	then
224	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
225	# then
226	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
227	#MRUN-calls on $localhost
228	#
229	#date and time user localhost remotehost termination mrun-command
230	#--------------------------------------------------------------------------------------------------------------------
231	#%STATEND%
232	# chmod 666 ${mrun_path}/statistik/mrun_statistik
233	# fi
234	#
235	# # EINTRAG IN DIE STATISTIK-DATEI
236	# string1=`date` #-L35
237	# string2=$usern #-L12
238	# string3=$localhost_realname #-L12
239	# string4=$host #-L12
240	# string5=$locat #-L12
241	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
242	# then
243	# if [[ $do_batch = true ]]
244	# then
245	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
246	# else
247	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
248	# fi
249	# fi
250	echo " " > /dev/null
251	fi
252
253	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
254	then
255
256	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
257	(( i = 0 ))
258	while (( i < iec ))
259	do
260	(( i = i + 1 ))
261	printf "\n *** Execution of ERROR-command:\n"
262	printf " >>> ${err_command[$i]}\n"
263	eval ${err_command[$i]}
264	done
265	if [[ -n $interpreted_config_file ]]
266	then
267	rm -rf $interpreted_config_file
268	fi
269	if [[ -n .mrun_environment ]]
270	then
271	rm -rf .mrun_environment
272	fi
273	if [[ $tmpcreate = true ]]
274	then
275	printf "\n *** Contents of \"$TEMPDIR\":\n"
276	ls -al; cd
277	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
278	fi
279	if [[ "$dvrserver_id" != "" ]]
280	then
281	echo "+++ killing dvrserver_id=$dvrserver_id"
282	kill $dvrserver_id
283	fi
284	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
285	then
286	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
287	fi
288	printf "\n\n+++ MRUN killed \n\n"
289	elif [[ $locat != control_c ]]
290	then
291	printf "\n\n --> all actions finished\n\n"
292	printf " Bye, bye $usern !!\n\n"
293	fi' exit
294
295
296	# BEI TERMINAL-BREAK:
297	trap 'rm -rf $working_directory/tmp_mrun
298	rm -rf $working_directory/tmp_check_namelist_files
299	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
300	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
301	then
302	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
303	fi
304	if [[ "$dvrserver_id" != "" ]]
305	then
306	echo "+++ killing dvrserver_id=$dvrserver_id"
307	kill $dvrserver_id
308	fi
309	printf "\n+++ MRUN killed by \"^C\" \n\n"
310	locat=control_c
311	exit
312	' 2
313
314
315	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
316	# BEEN SET
317	if [[ "$PALM_BIN" = "" ]]
318	then
319	printf "\n +++ environment variable PALM_BIN has not been set"
320	printf "\n please set it to the directory where the PALM scripts are located"
321	locat=palm_bin; exit
322	fi
323	export PATH=$PALM_BIN:$PATH
324
325
326
327	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
328	# FUER FOLGEJOBS BENOETIGT WIRD
329	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vw:xX:yY:zZ option
330	do
331	case $option in
332	(a) afname=$OPTARG;;
333	(A) store_on_archive_system=true; mc="$mc -A";;
334	(b) do_batch=true; mc="$mc -b";;
335	(B) delete_temporary_catalog=false; mc="$mc -B";;
336	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
337	(C) restart_run=true; mc="$mc -C";;
338	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
339	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
340	(F) job_on_file="-D"; mc="$mc -F";;
341	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
342	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
343	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
344	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
345	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
346	(I) ignore_archive_error=true; mc="$mc -I";;
347	(k) keep_data_from_previous_run=true; mc="$mc -k";;
348	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
349	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
350	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
351	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
352	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
353	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
354	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
355	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
356	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
357	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
358	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
359	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
360	(S) read_from_config=false; mc="$mc -S";;
361	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
362	(T) mrun_tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
363	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
364	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
365	(v) silent=true; mc="$mc -v";;
366	(w) max_par_io_str=$OPTARG; mc="$mc -w$OPTARG";;
367	(x) do_trace=true;set -x; mc="$mc -x";;
368	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
369	(y) ocean_file_appendix=true; mc="$mc -y";;
370	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
371	(z) check_namelist_files=false; mc="$mc -z";;
372	(Z) combine_plot_fields=false; mc="$mc -Z";;
373	(\?) printf "\n +++ unknown option $OPTARG \n"
374	printf "\n --> type \"$0 ?\" for available options \n"
375	locat=parameter;exit;;
376	esac
377	done
378
379
380	# EVTL. POSITIONSPARAMETER EINLESEN
381	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
382	(( to_shift = $OPTIND - 1 ))
383	shift $to_shift
384
385	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
386	if [[ "$1" = "?" ]]
387	then
388	(printf "\n *** mrun can be called as follows:\n"
389	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. -z -Z <modus> \n"
390	printf "\n Description of available options:\n"
391	printf "\n Option Description Default-Value"
392	printf "\n -a base name of input files equiv. -d"
393	printf "\n -A archiving when using file-attribute fl"
394	printf "\n -b batch-job on local machine ---"
395	printf "\n -B do not delete temporary directory at end ---"
396	printf "\n -c configuration file .mrun.config"
397	printf "\n -d base name of files attached to program test"
398	printf "\n -D preprocessor(cpp)-directives \"\" "
399	printf "\n -F create remote job file only ---"
400	printf "\n -h execution host $localhost_realname"
401	printf "\n -i INPUT control list \"\" "
402	printf "\n -I archiving errors of previous batch-jobs"
403	printf "\n will be ignored"
404	printf "\n -k keep data from previous run"
405	printf "\n -K additional conditions for controling"
406	printf "\n usage of conditional code and"
407	printf "\n env-variables in configuration file \"\" "
408	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
409	printf "\n -M Makefile name Makefile"
410	printf "\n -n node usage (shared/not_shared) depending on -h"
411	printf "\n -o OUTPUT control list \"\" "
412	printf "\n -O use OpenMP ---"
413	printf "\n -p software package list \"\" "
414	printf "\n -q queue \"$queue\" "
415	printf "\n -r run control list (combines -i -o) \"\" "
416	printf "\n -s filenames of routines to be compiled \"\" "
417	printf "\n must end with .f, .f90, .F, or .c !"
418	printf "\n use \"..\" for more than one file and wildcards"
419	printf "\n -s LM compiles all locally modified files"
420	printf "\n -S config file interpreted by shellscript ---"
421	printf "\n -t allowed cpu-time in seconds (batch) 0"
422	printf "\n -T tasks per node depending on -h"
423	printf "\n -u username on remote machine \"\" "
424	printf "\n -v no prompt for confirmation ---"
425	printf "\n -w maximum parallel io streams as given by -X"
426	printf "\n -x tracing of mrun for debug purposes ---"
427	printf "\n -X # of processors (on parallel machines) 1"
428	printf "\n -y add appendix \"_O\" to all local output"
429	printf "\n files (ocean precursor runs followed by"
430	printf "\n coupled atmosphere-ocean runs) ---"
431	printf "\n -Y run coupled model, \"#1 #2\" with"
432	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
433	printf "\n -z disable a priori parameter file check ---"
434	printf "\n -Z skip combine_plot_fields at the end of "
435	printf "\n the simulation ---"
436	printf "\n "
437	printf "\n Possible values of positional parameter <modus>:"
438	printf "\n \"?\" - this outline \n\n") \| more
439	exit
440	elif [[ "$1" != "" ]]
441	then
442	printf "\n +++ positional parameter $1 unknown \n"
443	locat=parameter; exit
444	fi
445
446
447
448	# KURZE STARTMELDUNG
449	printf "\n*** $version "
450	printf "\n will be executed. Please wait ..."
451
452
453
454	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
455	if [[ ! -f $config_file ]]
456	then
457	printf "\n\n +++ configuration file: "
458	printf "\n $config_file"
459	printf "\n does not exist"
460	locat=connect; exit
461	fi
462
463
464	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
465	line=""
466	grep "%host_identifier" $config_file > tmp_mrun
467	while read line
468	do
469	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
470	then
471	HOSTNAME=`echo $line \| cut -d" " -s -f2`
472	host_identifier=`echo $line \| cut -d" " -s -f3`
473	if [[ $localhost_realname = $HOSTNAME ]]
474	then
475	localhost=$host_identifier
476	break
477	fi
478	fi
479	done < tmp_mrun
480
481	if [[ "$localhost" = "" ]]
482	then
483	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
484	printf "\n for local host \"$localhost_realname\"."
485	printf "\n Please add line"
486	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
487	printf "\n to the configuration file."
488	locat=localhost; exit
489	fi
490
491
492	# HOSTSPEZIFISCHE VARIABLEN SETZEN
493	case $localhost_realname in
494	(r1\|r2\|h01\|b01) archive_system=tivoli;;
495	(cs*) archive_system=ut;;
496	(fimm.bccs.uib.no) fimm=true;;
497	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
498	(scirocco) scirocco=true;;
499	esac
500
501
502
503	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
504	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
505	[[ "$afname" = "" ]] && afname=$fname
506
507
508	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
509	if [[ "$run_mode" != "" ]]
510	then
511	input_list="$input_list $run_mode"
512	output_list="$output_list $run_mode"
513	fi
514
515
516	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
517	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
518	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
519	# STARTET)
520	if [[ "$fromhost" = "" ]]
521	then
522	fromhost=$localhost
523	fi
524
525
526	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
527	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
528	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
529	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
530	if [[ -n $host && "$host" != $localhost ]]
531	then
532	do_batch=true
533	do_remote=true
534	case $host in
535	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|nech\|necriam\|lcflow\|lckyoto\|lcsgib\|lcsgih\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
536	(*) printf "\n"
537	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
538	printf "\n is not available"
539	locat=nqs; (( iec = 0 )); exit;;
540	esac
541	else
542	host=$localhost
543	fi
544
545
546	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
547	if [[ -n $additional_conditions ]]
548	then
549	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
550	cond1=`echo $additional_conditions \| cut -d" " -f1`
551	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
552	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
553	if [[ -n $dummy ]]
554	then
555	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
556	locat=options; exit
557	fi
558	block=_$cond1
559	[[ -n $cond2 ]] && block=${block}_$cond2
560	fi
561
562
563	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
564	if [[ $run_coupled_model = true ]]
565	then
566
567	if [[ -n $coupled_dist ]]
568	then
569
570	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
571	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
572
573	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
574	then
575
576	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
577	printf "\n PEs (total) : $numprocs"
578	printf "\n PEs (atmosphere): $numprocs_atmos"
579	printf "\n PEs (ocean) : $numprocs_ocean"
580	locat=coupling; exit
581
582	fi
583
584	else
585
586	(( numprocs_ocean = $numprocs / 2 ))
587	(( numprocs_atmos = $numprocs / 2 ))
588
589	fi
590	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
591
592	# GET coupled_mode FROM THE CONFIG FILE
593	line=""
594	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
595	while read line
596	do
597	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && $(echo $line \| cut -d" " -s -f4) = $cond1 && $(echo $line \| cut -d" " -s -f4) = $cond2 ]]
598	then
599	coupled_mode="mpi2"
600	fi
601	done < tmp_mrun
602
603	fi
604
605
606	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
607	# ARCHIVIERUNG FEHLGESCHLAGEN IST
608	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
609	then
610	if [[ $ignore_archive_error = false ]]
611	then
612	printf "\n +++ data archiving of previous run failed"
613	printf "\n see directory \~/job_queue on remote machine"
614	locat=archive; exit
615	else
616	printf "\n +++ warning: data archiving in a previous run failed"
617	printf "\n MRUN continues, trying to get backup copy"
618	fi
619	fi
620
621
622	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
623	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
624	mrun_memory=$memory
625	mrun_group_number=$group_number
626	mrun_cpumax=$cpumax
627	mrun_numprocs=$numprocs
628
629
630	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
631	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
632	if [[ "$read_from_config" = false ]]
633	then
634
635	[[ $silent = false ]] && printf "\n Reading the configuration file... "
636	while read zeile
637	do
638	[[ $silent = false ]] && printf "."
639
640
641	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
642	# ERSETZEN
643	eval zeile=\"$zeile\"
644
645
646	# INTERPRETATION DER ZEILE
647	if [[ "$(echo $zeile)" = "" ]]
648	then
649	# LEERZEILE, KEINE AKTION
650	continue
651
652	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
653	then
654
655	# ZEILE IST KOMMENTARZEILE
656	true
657
658	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
659	then
660
661	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
662	zeile=$(echo $zeile \| cut -c2-)
663	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
664	var=`echo $zeile \| cut -d" " -f1`
665	value=`echo $zeile \| cut -d" " -s -f2`
666	for_host=`echo $zeile \| cut -d" " -s -f3`
667	for_cond1=`echo $zeile \| cut -d" " -s -f4`
668	for_cond2=`echo $zeile \| cut -d" " -s -f5`
669
670	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
671	then
672
673	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
674	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
675	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
676
677
678	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
679	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
680	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
681	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
682	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
683	# KONFIGURATIONSDATEI
684	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
685	then
686	eval $var=\$value
687
688	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
689	if [[ $do_trace = true ]]
690	then
691	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
692	fi
693	fi
694
695	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
696	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
697	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
698	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
699	if [[ $var = host ]]
700	then
701	if [[ -n $host && "$host" != $localhost ]]
702	then
703	do_batch=true
704	do_remote=true
705	case $host in
706	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lcflow\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
707	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
708	printf "\n is not available"
709	locat=nqs; exit;;
710	esac
711	else
712	host=$localhost
713	fi
714	fi
715
716	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
717	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
718	# DEN PROGRAMMEN BENOETIGT WERDEN
719	export $var
720	fi
721
722
723
724
725	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
726	then
727
728	# ZEILE DEFINIERT ERROR-KOMMANDO
729	(( iec = iec + 1 ))
730	zeile=$(echo $zeile \| cut -c4-)
731	err_command[$iec]="$zeile"
732
733	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
734	then
735
736	# ZEILE DEFINIERT INPUT-KOMMANDO
737	(( iic = iic + 1 ))
738	zeile=$(echo $zeile \| cut -c4-)
739	in_command[$iic]="$zeile"
740
741	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
742	then
743
744	# ZEILE DEFINIERT OUTPUT-KOMMANDO
745	(( ioc = ioc + 1 ))
746	zeile=$(echo $zeile \| cut -c4-)
747	out_command[$ioc]="$zeile"
748
749	else
750
751	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
752	# s2a: in/out - Feld
753	# s2b: loc - Feld (optional)
754	# s2c: tr/ar - Feld (optional)
755	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
756	s1=`echo $zeile \| cut -d" " -f1`
757	s2=`echo $zeile \| cut -d" " -s -f2`
758	s2a=$(echo $s2 \| cut -d":" -f1)
759	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
760	then
761	s2b=""
762	s2c=""
763	else
764	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
765	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
766	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
767	fi
768	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
769	s3=`echo $zeile \| cut -d" " -f3`
770	s4=`echo $zeile \| cut -d" " -s -f4`
771	s5=`echo $zeile \| cut -d" " -s -f5`
772	s6=`echo $zeile \| cut -d" " -s -f6`
773
774
775	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
776	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
777	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
778	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
779	# HANDEN SEIN MUSS (D.H. s2b = loc)
780	IFSALT="$IFS"; IFS="$IFS:"
781	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
782	then
783	found=false
784	for actual in $input_list
785	do
786	for formal in $s3
787	do
788	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
789	done
790	done
791	if [[ $found = true ]]
792	then
793	(( iin = iin + 1 ))
794	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
795	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
796	extin[$iin]=$s6
797	fi
798	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
799	then
800	found=false
801	for actual in $output_list
802	do
803	for formal in $s3
804	do
805	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
806	done
807	done
808	if [[ $found = true ]]
809	then
810	(( iout = iout + 1 ))
811	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
812	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
813	fi
814	elif [[ "$s2a" != in && "$s2a" != out ]]
815	then
816	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
817	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
818	locat=connect; exit
819	fi
820	IFS="$IFSALT"
821	fi
822	done < $config_file
823
824	else
825
826
827	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
828	[[ $silent = false ]] && printf "..."
829	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
830	export interpreted_config_file=.icf.$RANDOM
831
832
833
834	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
835	# VERFUEGUNG STELLEN
836	cat > .mrun_environment << %%END%%
837	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
838	config_file = '$config_file', do_remote = '$do_remote',
839	do_trace = '$do_trace', host = '$host',
840	input_list = '$input_list', icf = '$interpreted_config_file',
841	localhost = '$localhost', output_list = '$output_list' /
842
843	%%END%%
844
845	if [[ $localhost_realname = "sx-fep" ]]
846	then
847	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
848	else
849
850	if [[ "$host" != $localhost ]]
851	then
852
853	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
854	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
855	if [[ $? != 0 ]]
856	then
857	printf "\n\n +++ no interpret_config found"
858	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
859	locat=interpret_config; exit
860	fi
861	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
862	$interpret_config_executable
863
864	else
865
866	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
867	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
868	then
869	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
870	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
871	locat=interpret_config; exit
872	else
873	interpret_config${block}.x
874	fi
875
876	fi
877	fi
878	rm .mrun_environment
879
880
881	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
882	chmod u+x $interpreted_config_file
883	export PATH=$PATH:.
884	. $interpreted_config_file
885	rm $interpreted_config_file
886
887	fi
888
889
890	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
891	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
892	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
893	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
894	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
895	[[ "$max_par_io_str" != "" ]] && maximum_parallel_io_streams=$max_par_io_str
896	[[ "$mrun_tasks_per_node" != "" ]] && tasks_per_node=$mrun_tasks_per_node
897
898
899	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
900	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
901	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
902	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
903	if [[ "$SOURCES_COMPLETE" = "" ]]
904	then
905
906	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
907	# VEREINBART WURDE
908	source_path=""
909	line=""
910	grep "%source_path" $config_file > tmp_mrun
911	while read line
912	do
913	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
914	then
915	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
916	then
917	global_source_path=`echo $line \| cut -d" " -f2`
918	fi
919	fi
920	done < tmp_mrun
921
922	line=""
923	found=false
924	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
925	while read line
926	do
927	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
928	then
929	if [[ $found = true ]]
930	then
931	printf "\n\n +++ more than one source path found in configuration file"
932	printf "\n for local host \"$localhost\" "
933	locat=source_path; exit
934	fi
935	source_path=`echo $line \| cut -d" " -f2`
936	found=true
937	fi
938	done < tmp_mrun
939	rm tmp_mrun
940
941	if [[ "$source_path" = "" ]]
942	then
943	if [[ "$global_source_path" != "" ]]
944	then
945	source_path=$global_source_path
946	else
947	printf "\n\n +++ no source path found in configuration file"
948	printf "\n for local host \"$localhost\" "
949	locat=source_path; exit
950	fi
951	fi
952	eval source_path=$source_path
953
954	if [[ ! -d $source_path ]]
955	then
956	printf "\n\n +++ source path \"$source_path\" on local host"
957	printf "\n \"$localhost\" does not exist"
958	locat=source_path; exit
959	fi
960
961	fi
962
963
964	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
965	# DURCH OPTION -G MITGETEILT)
966	if [[ "$global_revision" = "" && $host != "ibmkisti" ]]
967	then
968	global_revision=`svnversion $source_path 2>/dev/null`
969	global_revision="Rev: $global_revision"
970	fi
971
972
973	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
974	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
975	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
976	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
977	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
978	if [[ -n $host && "$host" != $localhost ]]
979	then
980	do_batch=true
981	do_remote=true
982	case $host in
983	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lcflow\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
984	(*) printf "\n"
985	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
986	printf "\n is not available"
987	locat=nqs; (( iec = 0 )); exit;;
988	esac
989	else
990	host=$localhost
991	fi
992
993
994	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
995	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
996	then
997
998	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
999	if [[ ! -n $numprocs ]]
1000	then
1001	printf "\n"
1002	printf "\n +++ option \"-K parallel\" requires additional specification"
1003	printf "\n of the number of processors to be used by"
1004	printf "\n mrun-option \"-X\" or by environment-variable"
1005	printf "\n \"numprocs\" in the configuration file"
1006	locat=numprocs; (( iec = 0 )); exit
1007	fi
1008
1009	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
1010	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
1011	# GESAMTPROZESSORANZAHL IST
1012	if [[ "$tasks_per_node" = "" && $host != lcflow && $host != lcxt5m ]]
1013	then
1014	printf "\n"
1015	printf "\n +++ option \"-T\" (tasks per node) is missing"
1016	printf "\n set -T option or define tasks_per_node in the config file"
1017	locat=tasks_per_node; (( iec = 0 )); exit
1018	fi
1019	if [[ $host != lcflow && $host != lcxt5m ]]
1020	then
1021	(( ival = $tasks_per_node ))
1022	(( pes = numprocs ))
1023	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1024	# then
1025	# (( pes = pes - 1 ))
1026	# fi
1027	(( ii = pes / ival ))
1028	if (( pes - ii * ival > 0 ))
1029	then
1030	printf "\n"
1031	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1032	printf "\n divisor of the total number of processors (option \"-X\")"
1033	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1034	locat=tasks_per_node; (( iec = 0 )); exit
1035	fi
1036	fi
1037
1038
1039	# IBMY HAT NUR EINEN KNOTEN
1040	if [[ $host = ibmy ]]
1041	then
1042	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1043	then
1044	printf "\n"
1045	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1046	printf "\n total number of processors (option \"-X\")"
1047	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1048	locat=tasks_per_node; (( iec = 0 )); exit
1049	fi
1050	fi
1051
1052
1053	# SETTINGS FOR SUBJOB-COMMAND
1054	TOPT="-T $tasks_per_node"
1055	OOPT="-O $threads_per_task"
1056
1057	# GESAMTZAHL DER KNOTEN BESTIMMEN
1058	if [[ "$tasks_per_node" != "" ]]
1059	then
1060	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1061	fi
1062
1063	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1064	# SETZEN
1065	if [[ $node_usage = default ]]
1066	then
1067	if [[ $host = ibms ]]
1068	then
1069	node_usage=shared
1070	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1071	then
1072	node_usage=singlejob
1073	else
1074	node_usage=not_shared
1075	fi
1076	fi
1077
1078	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
1079	then
1080	printf "\n"
1081	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1082	printf "\n \"shared\" or \"not_shared\""
1083	locat=tasks_per_node; (( iec = 0 )); exit
1084	fi
1085
1086	fi
1087
1088	# PRUEFEN, OB HOSTFILE EXISTIERT
1089	if [[ -n $hostfile ]]
1090	then
1091	if [[ ! -f $hostfile ]]
1092	then
1093	printf "\n"
1094	printf "\n +++ hostfile \"$hostfile\" does not exist"
1095	locat=hostfile; exit
1096	fi
1097	fi
1098
1099	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1100	if [[ $host = ibmy && $do_remote = false ]]
1101	then
1102	if [[ ! -f $HOME/.rhosts ]]
1103	then
1104	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1105	printf "\n\n *** file:"
1106	printf "\n $HOME/.rhosts"
1107	printf "\n was created\n"
1108	fi
1109	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1110	then
1111	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1112	printf "\n\n *** file:"
1113	printf "\n $HOME/.rhosts"
1114	printf "\n was extended by the name of the current host\n"
1115	fi
1116	fi
1117
1118
1119	# Set default value for the maximum number of parallel io streams
1120	if [[ "$maximum_parallel_io_streams" = "" ]]
1121	then
1122	maximum_parallel_io_streams=$numprocs
1123	fi
1124
1125
1126	# Set port number option for calls of ssh/scp, subjob and batch_scp scripts
1127	if [[ "$scp_port" != "" ]]
1128	then
1129	PORTOPT="-P $scp_port"
1130	SSH_PORTOPT="-p $scp_port"
1131	fi
1132
1133
1134	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1135	if [[ $queue = none ]]
1136	then
1137	case $host in
1138	(ibmh) queue=no_class;;
1139	(ibmkisti) queue=class.32plus;;
1140	(ibmy) queue=parallel;;
1141	(lckiaps) queue=normal;;
1142	(lckyoto) queue=ph;;
1143	(lckyuh) queue=fx-single;;
1144	(lckyut) queue=cx-single;;
1145	(lcsgib) queue=testq;;
1146	(lcsgih) queue=testq;;
1147	(lctit) queue=S;;
1148	(nech) queue=none;;
1149	(necriam) queue=SP;;
1150	(unics) queue=unics;;
1151	esac
1152	fi
1153
1154
1155	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1156	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1157	# ERMITTELN
1158	(( i = 0 ))
1159	while (( i < iin ))
1160	do
1161	(( i = i + 1 ))
1162	(( maxcycle = 0 ))
1163
1164	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1165	if [[ "${actionin[$i]}" = di ]]
1166	then
1167	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1168	# REM-MASCHINE AUSWERTEN
1169	eval filename=${pathin[$i]}/${endin[$i]}
1170	else
1171	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1172	# REM-MASCHINE AUSWERTEN
1173	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1174	fi
1175	eval pathname=${pathin[$i]}
1176
1177	# SAVE INPUT FILE NAME FOR PARAMETER FILE CHECK
1178	if [[ ("${transin[$i]}" = job) && (-f $filename) ]]
1179	then
1180	filename_input=$filename
1181	fi
1182
1183	# PRUEFEN AUF VORHANDENSEIN
1184	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1185	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1186	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1187	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1188	then
1189	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1190	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1191	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1192	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1193	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1194	if [[ "${transin[$i]}" != "locopt" ]]
1195	then
1196	printf "\n\n +++ INPUT-file: "
1197	if [[ "${extin[$i]}" = "" ]]
1198	then
1199	printf "\n $filename"
1200	else
1201	printf "\n $filename.${extin[$i]}"
1202	fi
1203	printf "\n does not exist\n"
1204	locat=input; exit
1205	else
1206	transin[$i]="unavailable"
1207	fi
1208	else
1209
1210	# ZYKLUSNUMMER FESTSTELLEN
1211	ls -1 -d $filename > filelist 2>/dev/null
1212	ls -1 -d $filename.* >> filelist 2>/dev/null
1213	while read zeile
1214	do
1215	cycle=$(echo $zeile \| cut -f2 -d".")
1216	if [[ "$cycle" = "$zeile" ]]
1217	then
1218	(( icycle = 0 ))
1219	elif [[ "$cycle" = "${extin[$i]}" ]]
1220	then
1221	(( icycle = 0 ))
1222	else
1223	(( icycle = $cycle ))
1224	fi
1225	if (( icycle > maxcycle ))
1226	then
1227	(( maxcycle = icycle ))
1228	file_to_be_used=$zeile
1229	fi
1230	done <filelist
1231	rm filelist
1232
1233	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1234	if (( maxcycle > 0 ))
1235	then
1236	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1237	then
1238	filename=${filename}.$maxcycle.${extin[$i]}
1239	else
1240	filename=${filename}.$maxcycle
1241	fi
1242	else
1243	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1244	then
1245	filename=${filename}.${extin[$i]}
1246	fi
1247	fi
1248
1249	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1250	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1251	absnamein[$i]=$filename
1252	if (( maxcycle > 0 ))
1253	then
1254	if [[ "${actionin[$i]}" = di ]]
1255	then
1256	frelin[$i]=${endin[$i]}.$maxcycle
1257	else
1258	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1259	fi
1260	else
1261	if [[ "${actionin[$i]}" = di ]]
1262	then
1263	frelin[$i]=${endin[$i]}
1264	else
1265	frelin[$i]=${afname}${endin[$i]}
1266	fi
1267	fi
1268
1269	fi
1270	done
1271
1272	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1273	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1274	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1275	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1276	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1277	(( i = 0 ))
1278	while (( i < iout ))
1279	do
1280	(( i = i + 1 ))
1281	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1282	then
1283	if [[ "${actionout[$i]}" = tr ]]
1284	then
1285	actionout[$i]=""
1286	elif [[ "${actionout[$i]}" = trpe ]]
1287	then
1288	actionout[$i]=pe
1289	elif [[ "${actionout[$i]}" = tra ]]
1290	then
1291	actionout[$i]=a
1292	fi
1293	(( maxcycle = 0 ))
1294	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1295	eval catalogname=${pathout[$i]}
1296	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1297	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1298	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1299	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1300	then
1301
1302	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1303	if cat /dev/null > $filename
1304	then
1305	rm $filename
1306	else
1307
1308	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1309	if [[ ! -d $catalogname ]]
1310	then
1311	if mkdir -p $catalogname
1312	then
1313	printf "\n\n *** directory:"
1314	printf "\n $catalogname"
1315	printf "\n was created\n"
1316	else
1317	printf "\n\n +++ OUTPUT-file:"
1318	printf "\n $filename"
1319	printf "\n cannot be created, because directory does not exist"
1320	printf "\n and cannot be created either"
1321	printf "\n"
1322	locat=output ; exit
1323	fi 2>/dev/null
1324	else
1325	printf "\n\n +++ OUTPUT-file:"
1326	printf "\n $filename"
1327	printf "\n cannot be created, although directory exists"
1328	printf "\n"
1329	locat=output ; exit
1330	fi
1331	fi 2>/dev/null
1332	else
1333
1334	# ZYKLUSNUMMER FESTSTELLEN
1335	ls -1 -d $filename > filelist 2>/dev/null
1336	ls -1 -d $filename.* >> filelist 2>/dev/null
1337	while read zeile
1338	do
1339	cycle=$(echo $zeile \| cut -f2 -d".")
1340	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1341	then
1342	(( icycle = 1 ))
1343	else
1344	(( icycle = $cycle + 1 ))
1345	fi
1346	if (( icycle > maxcycle ))
1347	then
1348	(( maxcycle = icycle ))
1349	fi
1350	done <filelist
1351	rm filelist
1352	fi
1353
1354	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1355	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1356	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1357	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1358	if [[ "${actionout[$i]}" != a ]]
1359	then
1360	if (( maxcycle > 0 ))
1361	then
1362	filename=${filename}.$maxcycle
1363	if cat /dev/null > $filename
1364	then
1365	rm $filename
1366	else
1367	printf "\n +++ OUTPUT-file:"
1368	printf "\n $filename"
1369	printf "\n cannot be created"
1370	locat=output ; exit
1371	fi
1372	fi
1373	else
1374	(( maxcycle = maxcycle - 1 ))
1375	if (( maxcycle > 0 ))
1376	then
1377	filename=${filename}.$maxcycle
1378	fi
1379	fi
1380
1381	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1382	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1383	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1384	pathout[$i]=$filename
1385	if (( maxcycle > 0 ))
1386	then
1387	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1388	else
1389	frelout[$i]=${fname}${endout[$i]}
1390	fi
1391
1392	fi
1393	done
1394
1395
1396	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1397	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1398	then
1399	if [[ "$dvr_inc" = "" ]]
1400	then
1401	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1402	printf "\n This is required for the dvrp_graphics package.\n"
1403	locat=dvr; exit
1404	fi
1405	if [[ "$dvr_lib" = "" ]]
1406	then
1407	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1408	printf "\n This is required for the dvrp_graphics package.\n"
1409	locat=dvr; exit
1410	fi
1411	fi
1412
1413
1414	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1415	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1416	# UEBERSETZT ZU WERDEN)
1417	if [[ "$mainprog" = "" && "$executable" = "" ]]
1418	then
1419	printf "\n +++ neither main program nor executable defined"
1420	locat=source; exit
1421	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1422	then
1423	printf "\n +++ main program as well as executable defined"
1424	locat=source; exit
1425	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1426	then
1427	do_compile=false
1428	fi
1429
1430
1431	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1432	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1433	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1434	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1435	then
1436	rm -rf SOURCES_FOR_RUN_$fname
1437	mkdir SOURCES_FOR_RUN_$fname
1438	fi
1439
1440
1441	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1442	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1443	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1444	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1445	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1446	then
1447
1448	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1449
1450	if [[ "$source_list" = LOCALLY_MODIFIED ]]
1451	then
1452
1453	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1454	source_list=""
1455	cd $source_path
1456
1457
1458	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1459	if [[ ! -d .svn ]]
1460	then
1461	printf "\n\n +++ source directory"
1462	printf "\n \"$source_path\" "
1463	printf "\n is not under control of \"subversion\"."
1464	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1465	fi
1466
1467
1468	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1469	Filenames=""
1470	svn status > tmp_mrun
1471	while read line
1472	do
1473	firstc=`echo $line \| cut -c1`
1474	if [[ $firstc = M \|\| $firstc = "?" ]]
1475	then
1476	Name=`echo "$line" \| cut -c8-`
1477	extension=`echo $Name \| cut -d. -f2`
1478	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1479	then
1480	Filenames="$Filenames "$Name
1481	fi
1482	fi
1483	done < tmp_mrun
1484
1485
1486	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1487	for dateiname in $Filenames
1488	do
1489	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1490	source_list=$source_list"$dateiname "
1491	done
1492
1493	cd - > /dev/null
1494
1495
1496	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1497	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1498	# VORHANDEN
1499	elif [[ "$source_list" != "" && $restart_run != true ]]
1500	then
1501
1502	cd $source_path
1503
1504	for filename in $source_list
1505	do
1506
1507	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1508	if [[ $(echo $filename \| grep -c "/") != 0 ]]
1509	then
1510	printf "\n +++ source code file: $filename"
1511	printf "\n must not contain (\"/\") "
1512	locat=source; exit
1513	fi
1514
1515	if [[ ! -f $filename ]]
1516	then
1517	printf "\n +++ source code file: $filename"
1518	printf "\n does not exist"
1519	locat=source; exit
1520	else
1521	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1522	fi
1523
1524	done
1525
1526	cd - > /dev/null
1527
1528	fi
1529
1530
1531	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1532	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1533	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1534	if [[ $restart_run != true ]]
1535	then
1536
1537	if [[ ! -f "$source_path/$mainprog" ]]
1538	then
1539	printf "\n\n +++ main program: $mainprog"
1540	printf "\n does not exist in source directory"
1541	printf "\n \"$source_path\"\n"
1542	locat=source; exit
1543	else
1544	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1545	then
1546	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1547	source_list=${mainprog}" $source_list"
1548	fi
1549	fi
1550	fi
1551
1552
1553	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1554	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1555	if [[ "$restart_run" != true ]]
1556	then
1557	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1558	if [[ ! -f $makefile ]]
1559	then
1560	printf "\n +++ file \"$makefile\" does not exist"
1561	locat=make; exit
1562	else
1563	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1564	fi
1565	fi
1566
1567
1568	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1569	if [[ $restart_run != true && "$add_source_path" != "" ]]
1570	then
1571
1572	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1573	if [[ ! -d $add_source_path ]]
1574	then
1575	printf "\n\n +++ WARNING: additional source code directory"
1576	printf "\n \"$add_source_path\" "
1577	printf "\n does not exist or is not a directory."
1578	printf "\n No source code will be used from this directory!\n"
1579	add_source_path=""
1580	if [[ $silent == false ]]
1581	then
1582	sleep 3
1583	fi
1584	else
1585
1586	cd $add_source_path
1587	found=false
1588
1589	Names=$(ls -1 *.f90 2>&1)
1590	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1591	Names=$(ls -1 *.F90 2>&1)
1592	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1593	Names=$(ls -1 *.F 2>&1)
1594	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1595	Names=$(ls -1 *.f 2>&1)
1596	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1597	Names=$(ls -1 *.c 2>&1)
1598	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1599
1600	cd - > /dev/null
1601	cd SOURCES_FOR_RUN_$fname
1602
1603	# COPY MAKEFILE IF EXISTING
1604	if [[ -f $add_source_path/Makefile ]]
1605	then
1606	printf "\n\n *** user Makefile from directory"
1607	printf "\n \"$add_source_path\" is used \n"
1608	if [[ $silent == false ]]
1609	then
1610	sleep 1
1611	fi
1612	cp $add_source_path/Makefile .
1613	fi
1614
1615	for dateiname in $AddFilenames
1616	do
1617	if [[ -f $dateiname ]]
1618	then
1619	printf "\n +++ source code file \"$dateiname\" found in additional"
1620	printf "\n source code directory \"$add_source_path\" "
1621	printf "\n but was also given with option \"-s\" which means that it should be taken"
1622	printf "\n from directory \"$source_path\"."
1623	locat=source; exit
1624	fi
1625
1626	cp $add_source_path/$dateiname .
1627	source_list="$source_list $dateiname"
1628
1629	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1630	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1631	then
1632	printf "\n\n +++ user file \"$dateiname\" "
1633	printf "\n is not listed in Makefile \n"
1634	locat=source; exit
1635	else
1636
1637	# Default User-Interface von der Liste entfernen, falls Datei
1638	# ein User-Interface enthaelt
1639	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1640	# then
1641	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1642	# then
1643	# rm -rf user_interface.f90
1644	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1645	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1646	# printf "\n since a user-interface is found in file"
1647	# printf "\n \"$add_source_path/$dateiname\" \n"
1648	# sleep 3
1649	# else
1650	if [[ $found = false ]]
1651	then
1652	found=true
1653	printf "\n\n *** following user file(s) added to the"
1654	printf " files to be translated:\n "
1655	fi
1656	printf "$dateiname "
1657	if [[ $silent == false ]]
1658	then
1659	sleep 0.5
1660	fi
1661
1662	fi
1663	done
1664	[[ $found = true ]] && printf "\n"
1665	cd - > /dev/null
1666	fi
1667	fi
1668
1669
1670	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1671	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1672	if [[ $restart_run != true && -n $package_list ]]
1673	then
1674
1675	cd $source_path
1676
1677	for package in $package_list
1678	do
1679
1680	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1681
1682	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1683	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1684	# LIEFERT
1685	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1686
1687
1688	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1689	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1690	for source_list_name in $package_source_list
1691	do
1692	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1693	then
1694
1695	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1696	ending=`echo $source_list_name \| cut -f2 -d.`
1697	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1698	then
1699	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1700	source_list="$source_list $source_list_name"
1701	fi
1702	fi
1703	done
1704	done
1705
1706	cd - > /dev/null
1707	fi
1708
1709
1710	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1711	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1712	# if [[ "$restart_run" != true ]]
1713	# then
1714	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1715	# if [[ ! -f $makefile ]]
1716	# then
1717	# printf "\n +++ file \"$makefile\" does not exist"
1718	# locat=make; exit
1719	# else
1720	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1721	# fi
1722	# fi
1723
1724	fi # do_compile=true
1725
1726
1727	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1728	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1729	if [[ $do_compile = true ]]
1730	then
1731
1732	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1733	# ZUSAMMENSETZEN
1734	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1735	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1736	then
1737	cpp_options="${cpp_options},-D__ibm=__ibm"
1738	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1739	then
1740	cpp_options="$cpp_options -D__nec"
1741	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1742	then
1743	cpp_options="$cpp_options -D__lc"
1744	else
1745	cpp_options="$cpp_options -D__$localhost"
1746	fi
1747
1748	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1749	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1750	then
1751	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1752	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1753	else
1754	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1755	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1756	fi
1757
1758	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1759	if [[ -n $package_list ]]
1760	then
1761	for package in $package_list
1762	do
1763	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1764	then
1765	if [[ $package != "dvrp_graphics+1PE" ]]
1766	then
1767	cpp_options="${cpp_options},-D__$package=__$package"
1768	else
1769	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1770	export use_seperate_pe_for_dvrp_output=true
1771	fi
1772	else
1773	if [[ $package != "dvrp_graphics+1PE" ]]
1774	then
1775	cpp_options="$cpp_options -D__$package"
1776	else
1777	cpp_options="$cpp_options -D__dvrp_graphics"
1778	export use_seperate_pe_for_dvrp_output=true
1779	fi
1780	fi
1781	done
1782	fi
1783
1784	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1785	if [[ -n $cpp_opts ]]
1786	then
1787	for popts in $cpp_opts
1788	do
1789	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1790	then
1791	cpp_options="${cpp_options},-D__$popts=__$popts"
1792	else
1793	cpp_options="$cpp_options -D__$popts"
1794	fi
1795	done
1796	fi
1797
1798	else
1799
1800
1801	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1802	if [[ $do_remote = false ]]
1803	then
1804	if [[ ! -f $executable ]]
1805	then
1806	printf "\n +++ executable file: $executable"
1807	printf "\n does not exist"
1808	locat=executable; exit
1809	fi
1810	fi
1811	fi
1812
1813
1814	# JOBMODUS FESTSTELLEN
1815	if [[ "$ENVIRONMENT" = BATCH ]]
1816	then
1817	jobmo=BATCH
1818	else
1819	jobmo=INTERACTIVE
1820	fi
1821
1822
1823	# no interactive runs on lctit
1824	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
1825	then
1826	printf "\n +++ no interactive runs allowed on host \"$host\" "
1827	printf "\n please submit batch job using mrun option \"-b\" \n"
1828	locat=normal; exit
1829	fi
1830
1831
1832	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1833	# DURCH BENUTZER ANDERWEITIG VEREINBART
1834	if [[ "$compiler_name" = "" ]]
1835	then
1836
1837	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
1838	locat=compiler_name; exit
1839
1840	fi
1841
1842
1843	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
1844	[[ $localhost = necriam ]] && compiler_name=mpif90
1845
1846
1847
1848	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
1849	kennung=$RANDOM
1850	if [[ "$tmp_user_catalog" = "" ]]
1851	then
1852	if [[ $localhost = ibmh ]]
1853	then
1854	tmp_user_catalog=$SCRATCH
1855	elif [[ $localhost = nech ]]
1856	then
1857	tmp_user_catalog=$WRKSHR
1858	else
1859	tmp_user_catalog=/tmp
1860	fi
1861	fi
1862	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
1863
1864
1865	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
1866	# BESTIMMEN
1867	if [[ "$tmp_data_catalog" = "" ]]
1868	then
1869	if [[ $localhost = nech ]]
1870	then
1871	tmp_data_catalog=$WRKSHR/mrun_restart_data
1872	else
1873	tmp_data_catalog=/tmp/mrun_restart_data
1874	fi
1875	fi
1876
1877
1878	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
1879	# ERSETZEN
1880	if [[ $do_remote = false && $do_compile = true ]]
1881	then
1882	eval fopts=\"$fopts\"
1883	eval lopts=\"$lopts\"
1884	fi
1885
1886
1887
1888	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
1889	fopts="$fopts $netcdf_inc $dvr_inc"
1890	lopts="$lopts $netcdf_lib $dvr_lib"
1891	ROPTS="$ropts"
1892	# if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcflow \|\| $host = lcxe6 \|\| $host = lcxt5m \|\| $host = lck \|\| $host = lckiaps \|\| $host = lckordi \|\| $host = lcsb \|\| $host ) && -n $numprocs ]]
1893	# then
1894	XOPT="-X $numprocs"
1895	# fi
1896
1897
1898
1899	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
1900	# GRAMM BENOETIGT
1901	done=false
1902	while [[ $done = false ]]
1903	do
1904	cputime=$cpumax
1905	if (( $cputime == 0 ))
1906	then
1907	if [[ $do_batch = true ]]
1908	then
1909	printf "\n +++ cpu-time is undefined"
1910	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
1911	printf "\n >>> "
1912	read cputime 1>/dev/null 2>&1
1913	else
1914	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
1915	fi
1916	else
1917	done=true
1918	fi
1919	cpumax=$cputime
1920	done
1921
1922	(( minuten = cputime / 60 ))
1923	(( sekunden = cputime - minuten * 60 ))
1924
1925
1926	# PRUEFEN DER KERNSPEICHERANFORDERUNG
1927	if [[ $do_batch = true ]]
1928	then
1929	done=false
1930	while [[ $done = false ]]
1931	do
1932	if (( memory == 0 ))
1933	then
1934	printf "\n +++ memory demand is undefined"
1935	printf "\n >>> Please type memory in MByte per process as INTEGER:"
1936	printf "\n >>> "
1937	read memory 1>/dev/null 2>&1
1938	else
1939	done=true
1940	fi
1941	done
1942	fi
1943
1944
1945	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
1946	if [[ $do_remote = true && -z $remote_username ]]
1947	then
1948	while [[ -z $remote_username ]]
1949	do
1950	printf "\n +++ username on remote host \"$host\" is undefined"
1951	printf "\n >>> Please type username:"
1952	printf "\n >>> "
1953	read remote_username
1954	done
1955	mc="$mc -u$remote_username"
1956	fi
1957
1958	# CHECK FOR INITIAL COMMANDS AFTER LOGIN
1959	if [[ "$login_init_cmd" != "" ]]
1960	then
1961	export init_cmds="${login_init_cmd};"
1962	fi
1963
1964
1965	# set module load command and export for subjob
1966	if [[ "$modules" != "" ]]
1967	then
1968	if [[ $host = lctit ]]
1969	then
1970	export module_calls=". $modules"
1971	else
1972	export module_calls="module load ${modules};"
1973	fi
1974	fi
1975
1976	# bugfix for wrong netcdf module and for netCDF4 usage in case of mpt
1977	if [[ $host = lcsgib \|\| $host = lcsgih ]]
1978	then
1979	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
1980	then
1981	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
1982	fi
1983	# if [[ $(echo $module_calls \| grep -c mpt) != 0 ]]
1984	# then
1985	# export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/sgi/mpt/2011-02-07/lib:\$LD_LIBRARY_PATH;"
1986	# echo "*** module_calls = $module_calls"
1987	# fi
1988	fi
1989
1990
1991	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
1992	if [[ $host = lcsgib \|\| $host = lcsgih ]]
1993	then
1994	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
1995	then
1996	mpilib=mpt
1997	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
1998	then
1999	mpilib=mvapich
2000	elif [[ $(echo $modules \| grep -c impi ) != 0 ]]
2001	then
2002	mpilib=impi
2003	fi
2004	fi
2005
2006
2007
2008	###########################################################################
2009	# HEADER-AUSGABE
2010	###########################################################################
2011
2012
2013	calltime=$(date)
2014	printf "\n"
2015	# [[ $silent = false ]] && clear
2016	printf "#------------------------------------------------------------------------# \n"
2017	printf "\| %-35s%35s \| \n" "$version" "$calltime"
2018	printf "\| \| \n"
2019	spalte1="called on:"; spalte2=$localhost_realname
2020	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2021	if [[ $local_compile = false ]]
2022	then
2023	if [[ $do_remote = true ]]
2024	then
2025	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2026	else
2027	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2028	fi
2029	else
2030	spalte1="compiling test only!"; spalte2=""
2031	fi
2032	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2033	if [[ -n $numprocs ]]
2034	then
2035	if [[ $run_coupled_model = false ]]
2036	then
2037	spalte1="number of PEs:"; spalte2=$numprocs
2038	else
2039	spalte1="number of PEs:"; spalte2="$numprocs (atmosphere: $numprocs_atmos, ocean: $numprocs_ocean)"
2040	fi
2041	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2042	fi
2043	if [[ -n $tasks_per_node ]]
2044	then
2045	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2046	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2047	fi
2048	if [[ $maximum_parallel_io_streams != $numprocs ]]
2049	then
2050	spalte1="max par io streams:"; spalte2="$maximum_parallel_io_streams"
2051	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2052	fi
2053	if [[ $use_openmp = true ]]
2054	then
2055	spalte1="threads per task:"; spalte2="$threads_per_task"
2056	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2057	fi
2058	printf "\| \| \n"
2059	if [[ $do_compile = true ]]
2060	then
2061	if [[ "$mopts" != "" ]]
2062	then
2063	spalte1="make options:"; spalte2=$(echo "$mopts" \| cut -c-45)
2064	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2065	zeile=$(echo "$mopts" \| cut -c46-)
2066	while [[ "$zeile" != "" ]]
2067	do
2068	spalte1=""
2069	spalte2=$(echo "$zeile" \| cut -c-45)
2070	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2071	zeile=$(echo "$zeile" \| cut -c46-)
2072	done
2073	fi
2074
2075	spalte1="cpp directives:"; spalte2=$(echo "$cpp_options" \| cut -c-45)
2076	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2077	zeile=$(echo "$cpp_options" \| cut -c46-)
2078	while [[ "$zeile" != "" ]]
2079	do
2080	spalte1=""
2081	spalte2=$(echo "$zeile" \| cut -c-45)
2082	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2083	zeile=$(echo "$zeile" \| cut -c46-)
2084	done
2085
2086	spalte1="compiler options:"; spalte2=$(echo "$fopts" \| cut -c-45)
2087	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2088	zeile=$(echo "$fopts" \| cut -c46-)
2089	while [[ "$zeile" != "" ]]
2090	do
2091	spalte1=""
2092	spalte2=$(echo "$zeile" \| cut -c-45)
2093	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2094	zeile=$(echo "$zeile" \| cut -c46-)
2095	done
2096
2097	spalte1="linker options:"; spalte2=$(echo "$lopts" \| cut -c-45)
2098	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2099	zeile=$(echo "$lopts" \| cut -c46-)
2100	while [[ "$zeile" != "" ]]
2101	do
2102	spalte1=""
2103	spalte2=$(echo "$zeile" \| cut -c-45)
2104	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2105	zeile=$(echo "$zeile" \| cut -c46-)
2106	done
2107
2108	spalte1="modules to be load:"; spalte2=$(echo "$modules" \| cut -c-45)
2109	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2110	zeile=$(echo "$modules" \| cut -c46-)
2111	while [[ "$zeile" != "" ]]
2112	do
2113	spalte1=""
2114	spalte2=$(echo "$zeile" \| cut -c-45)
2115	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2116	zeile=$(echo "$zeile" \| cut -c46-)
2117	done
2118
2119	spalte1="main program:"; spalte2=$mainprog
2120	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2121	else
2122	spalte1=executable:; spalte2=$executable
2123	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2124	fi
2125	printf "\| \| \n"
2126	spalte1="base name of files:"; spalte2=$fname
2127	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2128	if [[ $fname != $afname ]]
2129	then
2130	spalte1="base name of input files:"; spalte2=$afname
2131	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2132	fi
2133	spalte1="INPUT control list:"; spalte2=$(echo $input_list)
2134	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2135	spalte1="OUTPUT control list:"; spalte2=$(echo $output_list)
2136	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2137
2138	if [[ "$ocean_file_appendix" = true ]]
2139	then
2140	printf "\| %-35s%-35s \| \n" "suffix \"_O\" is added to local files" " "
2141	fi
2142
2143	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2144	then
2145	spalte1="memory demand / PE":; spalte2="$memory MB"
2146	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2147	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2148	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2149	fi
2150
2151	if [[ $do_compile = true ]]
2152	then
2153	printf "\| \| \n"
2154	printf "\| Files to be compiled: \| \n"
2155	zeile=$source_list
2156	while [[ "$zeile" != "" ]]
2157	do
2158	linestart=$(echo $zeile \| cut -c-70)
2159	printf "\| %-70s \| \n" "$linestart"
2160	zeile=$(echo "$zeile" \| cut -c71-)
2161	done
2162	fi
2163	printf "#------------------------------------------------------------------------#"
2164
2165
2166
2167	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2168	if [[ $do_trace = true ]]
2169	then
2170	(( i = 0 ))
2171	while (( i < iin ))
2172	do
2173	(( i = i + 1 ))
2174	if (( i == 1 ))
2175	then
2176	printf "\n\n >>> INPUT-file assignments:\n"
2177	fi
2178	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2179	done
2180	(( i = 0 ))
2181	while (( i < iout ))
2182	do
2183	(( i = i + 1 ))
2184	if (( i == 1 ))
2185	then
2186	printf "\n\n >>> OUTPUT-file assignments:\n"
2187	fi
2188	printf "\n ${localout[$i]} : ${pathout[$i]}"
2189	done
2190	(( i = 0 ))
2191	while (( i < iic ))
2192	do
2193	(( i = i + 1 ))
2194	if (( i == 1 ))
2195	then
2196	printf "\n\n >>> INPUT-commands:\n"
2197	fi
2198	printf "\n ${in_command[$i]}"
2199	done
2200	(( i = 0 ))
2201	while (( i < ioc ))
2202	do
2203	(( i = i + 1 ))
2204	if (( i == 1 ))
2205	then
2206	printf "\n\n >>> OUTPUT-commands:\n"
2207	fi
2208	printf "\n ${out_command[$i]}"
2209	done
2210	fi
2211
2212
2213	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2214	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2215	then
2216	antwort=dummy
2217	printf "\n\n"
2218	printf " >>> everything o.k. (y/n) ? "
2219	while read antwort
2220	do
2221	if [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2222	then
2223	printf " >>> everything o.k. (y/n) ? "
2224	else
2225	break
2226	fi
2227	done
2228	if [[ $antwort = n \|\| $antwort = N ]]
2229	then
2230	locat=user_abort; (( iec = 0 )); exit
2231	fi
2232	if [[ $do_batch = true ]]
2233	then
2234	printf " >>> batch-job will be created and submitted"
2235	else
2236	if [[ $local_compile = false ]]
2237	then
2238	printf " >>> MRUN will now continue to execute on this machine"
2239	else
2240	printf " >>> a test compilation will now be carried out on this machine"
2241	fi
2242	fi
2243	fi
2244
2245
2246	# PERFORM PARAMETER FILE CHECK (COUPLED RUNS ARE NOT SUPPORTED YET)
2247	# DEFINE VARIABLES FOR FREQUENTLY USED DIRECTORIES
2248	check_depository="${working_directory}/trunk/UTIL"
2249	check_sources="${working_directory}/tmp_check_namelist_files"
2250	skip_check=false
2251
2252	# CHECK IF NAMELIST_FILE_CHECK HAS BEEN COMPILED SUCCESSFULLY
2253	if [[ ! -f $check_depository/check_namelist_files.tar ]]
2254	then
2255	skip_check=true
2256	reason="run on remote host or parameter file check has not been compiled."
2257	fi
2258	if [[ ! -f $PALM_BIN/check_namelist_files.x ]]
2259	then
2260	skip_check=true
2261	reason="parameter file check has not been compiled."
2262	fi
2263
2264	# CHECK FOR PARALLEL RUN; OTHERWISE SKIP CHECK
2265	if [[ "$cond1" != "parallel" && "$cond2" != "parallel" ]]
2266	then
2267	skip_check=true
2268	reason="serial run."
2269	fi
2270
2271	# ONLY PERFORM CHECK IF -z OPTION IS NOT SET, NO RESTART RUN IS CARRIED OUT
2272	# AND IF THE EXECUTION HOST IS THE LOCAL HOST
2273	# ATTENTION: THIS ROUTINE DOES NOT WORK IF THE COMPILER ON THE LOCAL HOST
2274	# DIFFERS FROM THE COMPILER ON THE REMOTE HOST
2275	if [[ $check_namelist_files == false ]]
2276	then
2277	skip_check=true
2278	reason="-z option set."
2279	fi
2280
2281	if [[ $fromhost != $localhost ]]
2282	then
2283	skip_check=true
2284	reason="submitting host is local host."
2285	fi
2286
2287	if [[ $run_coupled_model == true ]]
2288	then
2289	skip_check=true
2290	reason="coupled run."
2291	fi
2292
2293	if [[ $restart_run == true ]]
2294	then
2295	skip_check=true
2296	reason="restart run."
2297	fi
2298
2299	# SKIP CHECK IN CASE OF RESTART RUN: CHECK WHETHER THE LAST CHAR IS "f" IN PARIN
2300	(( last_char = `echo $filename_input \| wc -c` - 1 ))
2301	last_char=`echo $filename_input \| cut -c $last_char`
2302	if [[ "$last_char" == "f" ]]
2303	then
2304	skip_check=true
2305	reason="restart run."
2306	fi
2307
2308	if [[ $skip_check == false ]]
2309	then
2310	tmp_check=${working_directory}/tmp_check
2311
2312	# GET TOPOGRAPHY PARAMETER FILE SUFFIX (USUALLY "_P3DF"). THIS FILE MIGHT IS
2313	# NOT NECESSARILY REQUIRED
2314	line=""
2315	found=false
2316	grep "TOPOGRAPHY_DATA" $config_file > $tmp_check
2317	while read line1
2318	do
2319	line="$line1"
2320	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2321	then
2322	topo_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2323	found=true
2324	fi
2325	done < $tmp_check
2326
2327	if [[ $found = false ]]
2328	then
2329	printf "\n +++ no TOPOGRAPHY list entry found in the configuration file."
2330	fi
2331
2332	rm -rf ${working_directory}/tmp_check
2333
2334	# CHECK IF THE A P3DF FILE MUST BE CHECKED
2335	for item in $input_list
2336	do
2337	if [[ "$item" == "restart" ]]
2338	then
2339	check_restart=1
2340	else
2341	check_restart=0
2342	fi
2343	done
2344
2345	# ERROR IF NO PARAMETER FILE WAS FOUND, OTHERWISE PROCEED
2346	if [[ (! -f $filename_input) && ( "$filename_input" != "" ) ]]
2347	then
2348	printf "\n\n +++ ERROR: parameter file ($filename_input) not found."
2349	locat=check_namelist; exit
2350	fi
2351
2352	# CHECK IF THE RESTART PARAMETER FILE EXISTS (IF NECESSARY)
2353	if [[ $check_restart == 1 ]]
2354	then
2355
2356	filenamef="${filename_input}f"
2357	if [[ ! -f $filenamef ]]
2358	then
2359	printf "\n\n +++ WARNING: restart parameter file ($filenamef) is missing."
2360	check_restart=0
2361	answer=dummy
2362	printf "\n\n"
2363
2364	if [[ $silent == false ]]
2365	then
2366	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2367	do
2368	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2369	read answer
2370	done
2371	if [[ $answer = a \|\| $answer = A ]]
2372	then
2373	printf "\n +++ Aborting...."
2374	locat=normal; exit
2375	fi
2376	fi
2377	else
2378	check_restart=1
2379	fi
2380	fi
2381
2382	# CREATE TEMPORARY SOURCES_FOR_CHECK PATH
2383	mkdir $check_sources
2384	cd $check_sources
2385
2386
2387	# CHECK FOR USER CODE, OTHERWISE USE THE PRECOMPILED CHECK_NAMELIST_FILES.X
2388	if [[ -d $add_source_path ]]
2389	then
2390	printf "\n\n *** copying files from $check_depository"
2391	cp $check_depository/check_namelist_files.tar ./
2392
2393	printf "\n\n *** untar of makefile and source files in $check_sources"
2394	tar -xf check_namelist_files.tar > /dev/null 2>&1
2395
2396	printf "\n\n *** adding user code."
2397	cp $add_source_path/* ./
2398	touch check_namelist_files.f90
2399
2400	# GET COMPILER OPTIONS AND PERFORM MAKE
2401	printf "\n\n *** compiling code if necessary...\n"
2402
2403	# workaround for batch jobs on local machine (lcxe6)
2404	if [[ $do_batch == true && $do_remote == false ]]
2405	then
2406	eval $init_cmds
2407	fi
2408
2409	# GET CHECK OPTIONS
2410	line=""
2411	found=false
2412
2413	grep "$localhost" ${base_directory}/${config_file} \| grep "%cpp_options" > $tmp_check
2414
2415	while read line1
2416	do
2417
2418	if [[ $(echo $line1 \| cut -d" " -s -f3-) = "$localhost" ]]
2419	then
2420	line="$line1"
2421	fi
2422
2423	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2424	then
2425	# EVENTUELLE DOPPELPUNKTE AUS OPTIONSSTRING UND ALLE -D ENTFERNEN
2426	line="$line "
2427	copts_check=`echo $line \| cut -d" " -s -f2 \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g' \| sed 's/-D[^ ]* //g' \| sed 's/ -D.*//g'`
2428	found=true
2429	fi
2430
2431	done < $tmp_check
2432	copts_check="$copts_check -D__check -D__parallel"
2433
2434	make -f Makefile_check F90=$compiler_name_ser COPT="$copts_check"
2435
2436	# GET MAKE OUTPUT
2437	if [[ $? != 0 ]]
2438	then
2439	printf "\n +++ error during make."
2440	answer=dummy
2441	printf "\n\n"
2442	if [[ $silent == false ]]
2443	then
2444	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2445	do
2446	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2447	read answer
2448	done
2449	if [[ $answer = a \|\| $answer = A ]]
2450	then
2451	printf "\n +++ Aborting..."
2452	rm -rf $check_sources
2453	locat=normal; exit
2454	else
2455	skip_check=true
2456	fi
2457	else
2458	skip_check=true
2459	fi
2460	fi
2461	else
2462	cp $PALM_BIN/check_namelist_files.x ./
2463	fi
2464
2465	cp $filename_input ./PARIN
2466	if [[ $check_restart == 1 ]]
2467	then
2468	cp $filenamef ./PARINF
2469	fi
2470
2471	if [[ -f ${pathname}/${fname}${topo_suffix} && $skip_check == false ]]
2472	then
2473	printf "\n *** adding topography data"
2474	cp ${pathname}/${fname}${topo_suffix} ./TOPOGRAPHY_DATA
2475
2476	# IN CASE OF TOPOGRAPHY AND HIGH GRID POINT NUMBERS, THE STACK SIZE
2477	# MUST BE INCREASED. THIS IS DUE TO THE ARRAY nzb_local AND topo_height,
2478	# WHICH REQUIRE SUFFICIENT MEMORY
2479	ulimit -s unlimited
2480	fi
2481
2482	# CREATE ENVPAR FILE, WHICH IS NEEDED BY CHECK_NAMELIST_FILES.X
2483	cat > ENVPAR << %%END%%
2484	&envpar run_identifier = '$fname', host = '$host',
2485	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2486	maximum_parallel_io_streams = $maximum_parallel_io_streams,
2487	maximum_cpu_time_allowed = ${cpumax}.,
2488	revision = '$global_revision',
2489	local_dvrserver_running = $local_dvrserver_running /
2490
2491	%%END%%
2492
2493	# SAFETY CHECK: ONLY PROCEED IF THE PARAMETER CHECK PROGRAM WAS PROPERLY COMPILED
2494	if [[ ! -f check_namelist_files.x && $skip_check == false ]]
2495	then
2496	printf "\n +++ WARNING: check_namelist_files.x not found."
2497	answer=dummy
2498	printf "\n\n"
2499
2500	if [[ $silent == false ]]
2501	then
2502	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2503	do
2504	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2505	read answer
2506	done
2507	if [[ $answer = a \|\| $answer = A ]]
2508	then
2509	printf "\n +++ Aborting..."
2510	rm -rf $check_sources
2511	locat=normal; exit
2512	else
2513	printf "\n *** skipping parameter file check."
2514	fi
2515	fi
2516
2517	elif [[ $skip_check == false ]]
2518	then
2519	# STARTING THE PARAMETER FILE CHECK
2520	printf "\n\n *** starting parameter file check..."
2521
2522	# CHECKING THE P3D FILE
2523	printf "\n\n (1) checking $filename_input"
2524	echo "$numprocs 0 0" > VARIN
2525	errors=`./check_namelist_files.x < VARIN 2>&1`
2526
2527	check_error=false
2528	if [[ "$errors" == "" ]]
2529	then
2530	printf " --> o.k."
2531	else
2532	printf " --> failed."
2533	check_error=true
2534	printf "\n\n $errors"
2535	fi
2536
2537	# CHECKING THE PD3F FILE IF NECESSARY
2538	if [[ $check_restart == 1 && $check_error == false ]]
2539	then
2540	printf "\n\n (2) checking $filenamef"
2541
2542	# FIRST CHECK IF INITIALIZING_ACTIONS="READ_RESTART_DATA" IS SET
2543	# IN &INIPAR LIST
2544	found=false
2545	cat PARINF \| while read line
2546	do
2547	line=$(echo $line\|sed 's/ //g')
2548	if [[ $line == "&inipar" ]]
2549	then
2550	start_search=true
2551	fi
2552
2553	if [[ $start_search == true ]]
2554	then
2555	if [[ $line == "initializing_actions='read_restart_data'" ]]
2556	then
2557	found=true
2558	break
2559	fi
2560	fi
2561
2562	if [[ $line == "/" ]]
2563	then
2564	start_search=false
2565	fi
2566
2567	done
2568
2569	if [[ $found = false ]]
2570	then
2571	printf "\n\n +++ ERROR: initializing_actions = 'read_restart_data' not found"
2572	printf "\n in &inipar list in $fname$p3df_suffix."
2573	rm -rf $check_sources
2574	locat=check_namelist; exit
2575	fi
2576
2577	# READ max_user_pr FROM FILES
2578	if [[ -f parin_for_check ]]
2579	then
2580	read max_pr_user < parin_for_check
2581	else
2582	max_user_pr=0
2583	fi
2584
2585	echo "$numprocs 1 $max_pr_user" > VARIN
2586	errors=`./check_namelist_files.x < VARIN 2>&1`
2587
2588	if [[ "$errors" == "" ]]
2589	then
2590	printf " --> o.k."
2591	else
2592	printf " --> failed."
2593	check_error=true
2594	printf "\n\n $errors"
2595	fi
2596	fi
2597
2598	# REPORT ERRORS AND CONTINUE/EXIT
2599	if [[ $check_error == true ]]
2600	then
2601	printf "\n +++ errors found in the parameter file!\n"
2602	answer=dummy
2603	printf "\n\n"
2604
2605	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2606	do
2607	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2608	read answer
2609	done
2610
2611	if [[ $answer = a \|\| $answer = A ]]
2612	then
2613	printf "\n +++ Aborting..."
2614	rm -rf $check_sources
2615	locat=normal; exit
2616	fi
2617	else
2618	printf "\n\n *** parameter file(s) seem(s) to be o.k.\n"
2619	fi
2620	rm -rf $check_sources
2621	fi
2622	else
2623	printf "\n\n +++ skipping parameter file check due to following reason: $reason \n"
2624	fi
2625
2626	# DELETE TEMPORARY DIRECTORY AND FINISH NAMELIST FILE CHECK
2627	rm -rf $check_sources
2628	cd $working_directory
2629
2630
2631	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2632	# CHENDE AKTIONEN DURCHGEFUEHRT
2633	if [[ $do_batch = false ]]
2634	then
2635
2636
2637	# TEMPORAEREN KATALOG ERZEUGEN
2638	mkdir -p $TEMPDIR
2639	chmod go+rx $TEMPDIR
2640	tmpcreate=true
2641
2642	# set striping on lustre file system
2643	# if [[ $localhost = lcsgih ]]
2644	# then
2645	# lfs setstripe -s 8192k -c 16 $TEMPDIR
2646	# lfs getstripe $TEMPDIR
2647	# fi
2648
2649
2650	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2651	# TEMPORAERES VERZEICHNIS KOPIEREN
2652	if [[ $do_compile = true ]]
2653	then
2654
2655	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2656	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2657	if [[ $localhost = nech ]]
2658	then
2659	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2660	if mkdir -p $TEMPDIR_COMPILE
2661	then
2662	printf "\n *** \"$TEMPDIR_COMPILE\" "
2663	printf "\n is generated as temporary directory for cross compiling\n"
2664	else
2665	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2666	printf "\n needed for cross compilation failed"
2667	locat=compile
2668	exit
2669	fi
2670	else
2671	TEMPDIR_COMPILE=$TEMPDIR
2672	fi
2673
2674
2675	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2676	line=""
2677	grep "%depository_path" $config_file > tmp_mrun
2678	while read line
2679	do
2680	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2681	then
2682	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2683	then
2684	global_depository_path=`echo $line \| cut -d" " -s -f2`
2685	fi
2686	fi
2687	done < tmp_mrun
2688
2689	line=""
2690	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2691	while read line
2692	do
2693	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2694	then
2695	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2696	then
2697	local_depository_path=`echo $line \| cut -d" " -s -f2`
2698	fi
2699	fi
2700	done < tmp_mrun
2701
2702	if [[ "$local_depository_path" = "" ]]
2703	then
2704	if [[ "$global_depository_path" != "" ]]
2705	then
2706	local_depository_path=$global_depository_path
2707	else
2708	printf "\n\n +++ no depository path found in configuration file"
2709	printf "\n for local host \"$localhost\" "
2710	printf "\n please set \"\%depository_path\" in configuration file\n"
2711	locat=config_file; exit
2712	fi
2713	fi
2714	eval local_depository_path=$local_depository_path
2715	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2716	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2717
2718
2719	basename=`echo $mainprog \| cut -f1 -d"."`
2720	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2721	if [[ ! -f $make_depository ]]
2722	then
2723	printf "\n"
2724	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2725	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2726	else
2727	cp $make_depository $TEMPDIR_COMPILE
2728	cd $TEMPDIR_COMPILE
2729	tar -xf $make_depository > /dev/null 2>&1
2730	cd - > /dev/null
2731	fi
2732
2733	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2734
2735	else
2736
2737	cp $executable ${TEMPDIR}/a.out
2738
2739	fi
2740
2741
2742	# WECHSEL IN TEMPORAEREN KATALOG
2743	cd $TEMPDIR
2744	printf "\n *** changed to temporary directory: $TEMPDIR"
2745
2746
2747	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2748	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2749	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2750	# ERMITTELN
2751	(( i = 0 ))
2752	while (( i < iout ))
2753	do
2754	(( i = i + 1 ))
2755	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2756	then
2757	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2758	else
2759	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2760	fi
2761	done
2762
2763
2764	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2765	if [[ $do_compile = true ]]
2766	then
2767
2768
2769	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2770	printf "\n\n\n *** compilation starts \n$striche\n"
2771	printf " *** compilation with make using following options:\n"
2772	printf " make depository: $make_depository"
2773	if [[ "$mopts" != "" ]]
2774	then
2775	printf " make options: $mopts\n"
2776	fi
2777	printf " compilername: $compiler_name\n"
2778	printf " compiler options: $fopts\n"
2779	printf " preprocessor directives: $cpp_options \n"
2780	printf " linker options: $lopts \n"
2781	if [[ "$modules" != "" ]]
2782	then
2783	printf " modules to be load: $modules \n"
2784	fi
2785	printf " source code files: $source_list \n"
2786
2787	if [[ $localhost = nech ]]
2788	then
2789	# init_cmds was ". /SX/opt/etc/initsx.sh;"
2790	ssh $SSH_PORTOPT 136.172.44.192 -l $usern "$init_cmds $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2791	cp $TEMPDIR_COMPILE/a.out .
2792	[[ $? != 0 ]] && compile_error=true
2793	rm -rf $TEMPDIR_COMPILE
2794	elif [[ $localhost = ibmh ]]
2795	then
2796	printf " compiler is called via ssh on \"plogin1\" \n"
2797	ssh $SSH_PORTOPT plogin1 -l $usern "$init_cmds export PATH=/sw/ibm/xlf/13.1.0.8/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2798	[[ ! -f a.out ]] && compile_error=true
2799	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2800	elif [[ $localhost = lcsgib ]]
2801	then
2802	printf " compiler is called via ssh on \"bicegate0\" \n"
2803	ssh $SSH_PORTOPT bicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2804	[[ ! -f a.out ]] && compile_error=true
2805	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2806	elif [[ $localhost = lcsgih ]]
2807	then
2808	printf " compiler is called via ssh on \"hicegate0\" \n"
2809	ssh $SSH_PORTOPT hicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2810	[[ ! -f a.out ]] && compile_error=true
2811	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2812	elif [[ $localhost = lcflow ]]
2813	then
2814	printf " compiler is called via ssh on \"flow\" \n"
2815	ssh $SSH_PORTOPT flow02.hpc.uni-oldenburg.de -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2816	[[ ! -f a.out ]] && compile_error=true
2817	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2818	else
2819	[[ "$init_cmds" != "" ]] && eval $init_cmds
2820	[[ "$module_calls" != "" ]] && eval $module_calls
2821	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2822
2823	fi
2824
2825	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2826	then
2827	printf "\n +++ error occured while compiling or linking"
2828	locat=compile
2829
2830	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
2831	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
2832	# then
2833	exit
2834	# else
2835	# locat=normal
2836	# fi
2837	else
2838	printf "$striche\n *** compilation finished \n"
2839	fi
2840	fi
2841
2842
2843	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2844	if [[ $local_compile = true ]]
2845	then
2846	cd $HOME
2847	rm -rf $TEMPDIR
2848	locat=local_compile; exit
2849	fi
2850
2851
2852	# BEREITSTELLEN DER INPUT-DATEIEN
2853	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2854	(( i = 0 ))
2855	while (( i < iin ))
2856	do
2857	(( i = i + 1 ))
2858	if (( i == 1 ))
2859	then
2860	printf "\n\n *** providing INPUT-files:\n$striche"
2861	fi
2862
2863
2864	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2865	if [[ "${transin[$i]}" = unavailable ]]
2866	then
2867	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2868	then
2869	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2870	printf "\n is not available!"
2871	else
2872	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2873	printf "\n is not available!"
2874	fi
2875	continue
2876	fi
2877
2878	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2879	files_for_pes=false; datentyp=file
2880	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2881	then
2882	files_for_pes=true; datentyp=directory
2883	actionin[$i]=""
2884	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2885	then
2886	actionin[$i]=""
2887	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2888	then
2889	files_for_pes=true; datentyp=directory
2890	actionin[$i]="ar"
2891	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2892	then
2893	actionin[$i]="ar"
2894	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2895	then
2896	files_for_pes=true; datentyp=directory
2897	actionin[$i]="fl"
2898	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2899	then
2900	actionin[$i]="fl"
2901	fi
2902
2903	if [[ $files_for_pes = true ]]
2904	then
2905	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
2906	else
2907	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
2908	fi
2909
2910	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
2911	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
2912	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
2913	# SERVER ZU HOLEN
2914	if [[ "${actionin[$i]}" = fl ]]
2915	then
2916	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
2917	if [[ $files_for_pes = false ]]
2918	then
2919	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
2920	then
2921	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
2922	got_tmp[$i]=true
2923	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2924	then
2925	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2926	printf "\n *** trying to use backup copy in \"$WORK\" "
2927	cp $WORK/${frelin[$i]} ${localin[$i]}
2928	else
2929	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2930	printf "\n or \"$tmp_data_catalog\" does not exist!"
2931	printf "\n *** trying to get copy from archive"
2932	actionin[$i]=ar
2933	fi
2934	else
2935	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
2936	then
2937	mkdir ${localin[$i]}
2938	cd $tmp_data_catalog/${frelin[$i]}
2939	for file in $(ls *)
2940	do
2941	ln $file $TEMPDIR/${localin[$i]}
2942	done
2943	cd $TEMPDIR
2944	got_tmp[$i]=true
2945	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2946	then
2947	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2948	printf "\n *** trying to use backup copy in \"$WORK\" "
2949	cp -r $WORK/${frelin[$i]} ${localin[$i]}
2950	else
2951	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2952	printf "\n or \"$tmp_data_catalog\" does not exist!"
2953	printf "\n *** trying to get copy from archive"
2954	actionin[$i]=ar
2955	fi
2956	fi
2957	fi
2958
2959
2960	# DATEI LIEGT AUF ARCHIV-SERVER
2961	if [[ "${actionin[$i]}" = ar ]]
2962	then
2963
2964	if [[ $files_for_pes = false ]]
2965	then
2966	printf "\n file will be restored from archive-system ($archive_system)!"
2967	else
2968	printf "\n directory will be restored from archive-system ($archive_system)!"
2969	fi
2970
2971	file_restored=false
2972
2973	if [[ $archive_system = asterix ]]
2974	then
2975	do_stagein=true
2976	(( stagein_anz = 0 ))
2977	while [[ $do_stagein = true ]]
2978	do
2979	if [[ $files_for_pes = false ]]
2980	then
2981	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
2982	else
2983	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
2984	fi
2985	cat STAGEIN_OUTPUT
2986	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
2987	then
2988	file_restored=true
2989	do_stagein=false
2990	else
2991	(( stagein_anz = stagein_anz + 1 ))
2992	if (( stagein_anz == 10 ))
2993	then
2994	printf "\n +++ stagein stoped after 10 tries"
2995	locat=stage
2996	exit
2997	fi
2998	printf "\n +++ restoring from archive failed, trying again:"
2999	sleep 900
3000	fi
3001	done
3002	elif [[ $archive_system = DMF ]]
3003	then
3004	if [[ $files_for_pes = false ]]
3005	then
3006	printf "\n +++ restoring of single files impossible with $archive_system !\n"
3007	locat=DMF
3008	exit
3009	else
3010	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
3011	cp -r $ARCHIVE/${frelin[$i]} $PWD
3012	file_restored=true
3013	fi
3014	elif [[ $archive_system = tivoli ]]
3015	then
3016	if [[ $files_for_pes = false ]]
3017	then
3018	if [[ $localhost = lcsgih ]]
3019	then
3020	ssh $SSH_PORTOPT $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3021	else
3022	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3023	fi
3024	else
3025	(( inode = 0 ))
3026	while (( inode < nodes ))
3027	do
3028	if [[ $localhost = lcsgih ]]
3029	then
3030	ssh $SSH_PORTOPT $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3031	else
3032	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3033	fi
3034	(( inode = inode + 1 ))
3035	done
3036	fi
3037	file_restored=true
3038	elif [[ $archive_system = ut ]]
3039	then
3040	if [[ $files_for_pes = false ]]
3041	then
3042	cp $UT/${frelin[$i]} .
3043	else
3044	(( inode = 0 ))
3045	while (( inode < nodes ))
3046	do
3047	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
3048	(( inode = inode + 1 ))
3049	done
3050	fi
3051	file_restored=true
3052	else
3053	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
3054	locat=rearchive
3055	exit
3056	fi
3057
3058	if [[ $file_restored = true ]]
3059	then
3060
3061	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
3062	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
3063	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
3064	if [[ $files_for_pes = false ]]
3065	then
3066	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
3067	else
3068	mkdir $tmp_data_catalog/${frelin[$i]}
3069	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
3070	fi
3071	got_tmp[$i]=true
3072
3073	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
3074	mv ${frelin[$i]} ${localin[$i]}
3075
3076	fi
3077	fi
3078
3079
3080	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
3081	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
3082	then
3083
3084	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
3085	then
3086
3087	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
3088	printf "\n file will be provided for $numprocs processors"
3089	mkdir ${localin[$i]}
3090	ival=$numprocs
3091	(( ii = 0 ))
3092	while (( ii <= ival-1 ))
3093	do
3094	if (( ii < 10 ))
3095	then
3096	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
3097	elif (( ii < 100 ))
3098	then
3099	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
3100	elif (( ii < 1000 ))
3101	then
3102	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
3103	else
3104	cp ${absnamein[$i]} ${localin[$i]}/_$ii
3105	fi
3106	(( ii = ii + 1 ))
3107	done
3108
3109	else
3110
3111	if [[ $files_for_pes = true ]]
3112	then
3113
3114	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
3115	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
3116	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
3117	# PER MOVE UMBENANNT WERDEN
3118	printf "\n providing $numprocs files for the respective processors"
3119	mkdir ${localin[$i]}
3120	if [[ $link_local_input = true ]]
3121	then
3122	printf " using ln -f\n"
3123	cd ${absnamein[$i]}
3124	for file in $(ls *)
3125	do
3126	ln -f $file ${localin[$i]}
3127	done
3128	cd $TEMPDIR
3129	fi
3130	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
3131	if [[ ! -f "${localin[$i]}/_0000" ]]
3132	then
3133	if [[ $link_local_input = true ]]
3134	then
3135	printf " ln failed for .../_0000, using cp...\n"
3136	fi
3137	cp -r ${absnamein[$i]}/* ${localin[$i]}
3138	fi
3139
3140	else
3141	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
3142	if [[ $link_local_input = true ]]
3143	then
3144	printf " using ln -f\n"
3145	ln -f ${absnamein[$i]} ${localin[$i]}
3146	fi
3147	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
3148	if [[ ! -f "${localin[$i]}" ]]
3149	then
3150	if [[ $link_local_input = true ]]
3151	then
3152	printf " ln failed, using cp...\n"
3153	fi
3154	cp ${absnamein[$i]} ${localin[$i]}
3155	fi
3156	fi
3157	fi
3158	fi
3159
3160	done
3161	if (( i != 0 ))
3162	then
3163	printf "\n$striche\n *** all INPUT-files provided \n"
3164	fi
3165
3166
3167	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
3168	(( i = 0 ))
3169	while (( i < iic ))
3170	do
3171	(( i = i + 1 ))
3172	if (( i == 1 ))
3173	then
3174	printf "\n\n *** execution of INPUT-commands:\n$striche"
3175	fi
3176	printf "\n >>> ${in_command[$i]}"
3177	eval ${in_command[$i]}
3178	if (( i == iic ))
3179	then
3180	printf "\n$striche\n"
3181	fi
3182	done
3183
3184
3185	# VERBLEIBENDE CPU-ZEIT BERECHNEN
3186	cpurest=${cpumax}.
3187
3188
3189	# START DVR STREAMING SERVER
3190	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3191	then
3192	if [[ "$dvr_server" != "" ]]
3193	then
3194
3195	printf "\n\n *** preparing the dvr streaming server configuration file"
3196
3197	# Check, if a dvr server is already running
3198	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
3199	if [[ "$running_dvrserver_id" != "" ]]
3200	then
3201
3202	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
3203	printf "\n This server is used instead starting a new one!"
3204	printf "\n If required, script \"process_dvr_output\" has to be run manually."
3205
3206	else
3207
3208	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
3209	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
3210	then
3211	cp ${PALM_BIN}/.dvrserver.config .
3212
3213	# Entering the BASEDIR, UID and GID into this file
3214	user_id=`id -u`
3215	group_id=`id -g`
3216	# & is needed as seperator, because TEMPDIR contains /
3217	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
3218	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
3219	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
3220	mv .dvrserver.3 .dvrserver.config
3221	rm .dvrserver.1 .dvrserver.2
3222
3223	# Start dvr server in background, get his id and print on terminal
3224	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
3225	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
3226	printf "\n *** streaming server with id=$dvrserver_id is started in background"
3227	local_dvrserver_running=.TRUE.
3228	else
3229	printf "\n +++ missing file \".dvrserver.config\" in directory:"
3230	printf "\n \"$PALM_BIN\" "
3231	locat=dvr
3232	exit
3233	fi
3234
3235	fi
3236
3237	else
3238	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
3239	fi
3240	fi
3241
3242
3243	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
3244	# LESEN VON PALM)
3245	cat > ENVPAR << %%END%%
3246	&envpar run_identifier = '$fname', host = '$localhost',
3247	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
3248	maximum_parallel_io_streams = $maximum_parallel_io_streams,
3249	maximum_cpu_time_allowed = ${cpumax}.,
3250	revision = '$global_revision',
3251	local_dvrserver_running = $local_dvrserver_running /
3252
3253	%%END%%
3254
3255
3256	# PROGRAMMSTART
3257	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
3258	PATH=$PATH:$TEMPDIR
3259
3260	# MPI debug option (argument checking, slows down execution due to increased latency)
3261	if [[ "$mpi_debug" = true ]]
3262	then
3263	export MPI_CHECK_ARGS=1
3264	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
3265	fi
3266
3267	if [[ "$totalview" = true ]]
3268	then
3269	printf "\n *** totalview debugger will be used"
3270	tv_opt="-tv"
3271	else
3272	tv_opt=""
3273	fi
3274
3275	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
3276	then
3277	if [[ "$ENVIRONMENT" = BATCH ]]
3278	then
3279	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
3280	then
3281	printf "\n +++ debug is allowed in interactive mode only"
3282	locat=debug
3283	exit
3284	fi
3285	fi
3286	if [[ $localhost = ibmh ]]
3287	then
3288
3289	# SETUP THE IBM MPI ENVIRONMENT
3290	export MP_SHARED_MEMORY=yes
3291	export AIXTHREADS_SCOPE=S
3292	export OMP_NUM_THREADS=$threads_per_task
3293	export AUTHSTATE=files
3294	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3295
3296	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
3297	export MP_ADAPTER_USE=shared
3298	export MP_CPU_USE=multiple
3299	export MP_TIMEOUT=1200
3300
3301	unset MP_TASK_AFFINITY
3302
3303	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
3304	#(( ii = 1 ))
3305	#while (( ii <= $numprocs ))
3306	#do
3307	# echo $localhost_realname >> hostfile
3308	# (( ii = ii + 1 ))
3309	#done
3310	#export MP_HOSTFILE=hostfile
3311
3312	if [[ "$LOADLBATCH" = yes ]]
3313	then
3314	totalview poe a.out $ROPTS
3315	else
3316	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3317	export TVDSVRLAUNCHCMD=ssh
3318	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3319	fi
3320	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
3321	then
3322	# CURRENTLY NO DEBUGGER ON LCSGI
3323	if [[ $run_coupled_model = true ]]
3324	then
3325	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
3326	locat=debug
3327	exit
3328	else
3329	echo "no_coupling" > runfile_atmos
3330	fi
3331	(( ii = $numprocs / $threads_per_task ))
3332	export OMP_NUM_THREADS=$threads_per_task
3333	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3334	if [[ $threads_per_task != 1 ]]
3335	then
3336	printf "\n threads per task: $threads_per_task"
3337	fi
3338	printf "\n\n"
3339	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3340	then
3341	# export MPI_LAUNCH_TIMEOUT=360
3342	if [[ "$totalview" = true ]]
3343	then
3344	printf "\n running totalview debugger"
3345	mpiexec_mpt $tv_opt -n $ii ./a.out $ROPTS < runfile_atmos
3346	else
3347	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3348	fi
3349	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3350	then
3351	# ulimit -s 300000 # A too large stack size causes problems
3352	# export MV2_NUM_PORTS=2
3353	# export MV2_CPU_MAPPING=0:1:2:3
3354	if [[ "$totalview" = true ]]
3355	then
3356	printf "\n running totalview debugger"
3357	mpiexec $tv_opt ./a.out $ROPTS < runfile_atmos
3358	else
3359	mpiexec ./a.out $ROPTS < runfile_atmos
3360	fi
3361	fi
3362	else
3363	printf "\n +++ no debug available on \"$localhost\" "
3364	printf "\n or not implemented in mrun so far"
3365	locat=debug
3366	exit
3367	fi
3368
3369	# end debug mode
3370	else
3371
3372	# normal execution
3373	if [[ -n $numprocs ]]
3374	then
3375	# RUNNING THE PROGRAM ON PARALLEL MACHINES
3376	if [[ $(echo $host \| cut -c1-3) = ibm ]]
3377	then
3378	# SETUP THE IBM MPI ENVIRONMENT
3379	if [[ $host != ibmh && $host != ibmkisti ]]
3380	then
3381	export MP_SHARED_MEMORY=yes
3382	export AIXTHREAD_SCOPE=S
3383	export OMP_NUM_THREADS=$threads_per_task
3384	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
3385	export AUTHSTATE=files
3386	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3387	# export MP_PRINTENV=yes
3388
3389	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3390	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3391	export MP_WAIT_MODE=poll
3392	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3393	fi
3394
3395	if [[ $host = ibmkisti ]]
3396	then
3397	export LANG=en_US
3398	export MP_SHARED_MEMORY=yes
3399	if [[ $threads_per_task = 1 ]]
3400	then
3401	export MP_SINGLE_THREAD=yes
3402	export MEMORY_AFFINITY=MCM
3403	else
3404	export OMP_NUM_THREADS=$threads_per_task
3405	fi
3406	fi
3407
3408	if [[ "$LOADLBATCH" = yes ]]
3409	then
3410	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3411	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3412	then
3413	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3414	else
3415	if [[ $run_coupled_model = false ]]
3416	then
3417	if [[ "$ocean_file_appendix" = true ]]
3418	then
3419	echo "precursor_ocean" > runfile_atmos
3420	else
3421	echo "precursor_atmos" > runfile_atmos
3422	fi
3423	else
3424	(( iia = $numprocs_atmos / $threads_per_task ))
3425	(( iio = $numprocs_ocean / $threads_per_task ))
3426	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3427	printf "\n using $coupled_mode coupling"
3428	printf "\n\n"
3429	echo "coupled_run $iia $iio" > runfile_atmos
3430	fi
3431	poe ./a.out $ROPTS < runfile_atmos
3432	fi
3433	else
3434	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
3435	then
3436	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3437	elif [[ $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibmy ]]
3438	then
3439	if [[ -f $hostfile ]]
3440	then
3441	cp $hostfile hostfile
3442	else
3443	(( ii = 1 ))
3444	while (( ii <= $numprocs ))
3445	do
3446	echo $localhost_realname >> hostfile
3447	(( ii = ii + 1 ))
3448	done
3449	fi
3450	export MP_HOSTFILE=hostfile
3451	if [[ $run_coupled_model = false ]]
3452	then
3453	if [[ "$ocean_file_appendix" = true ]]
3454	then
3455	echo "precursor_ocean" > runfile_atmos
3456	else
3457	echo "precursor_atmos" > runfile_atmos
3458	fi
3459	else
3460	(( iia = $numprocs_atmos / $threads_per_task ))
3461	(( iio = $numprocs_ocean / $threads_per_task ))
3462	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3463	printf "\n using $coupled_mode coupling"
3464	printf "\n\n"
3465	echo "coupled_run $iia $iio" > runfile_atmos
3466	fi
3467	if [[ $localhost = ibmy ]]
3468	then
3469	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3470	else
3471	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
3472	fi
3473
3474	else
3475	if [[ "$host_file" = "" ]]
3476	then
3477	printf "\n +++ no hostfile given in configuration file"
3478	locat=config_file
3479	exit
3480	else
3481	eval host_file=$host_file
3482	fi
3483	export MP_HOSTFILE=$host_file
3484	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3485	fi
3486	fi
3487	elif [[ $host = nech \|\| $host = necriam ]]
3488	then
3489	(( ii = nodes ))
3490	if [[ $ii = 1 ]]
3491	then
3492	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3493	export MPIPROGINF=YES
3494	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3495	echo "*** execution on single node with mpirun"
3496	mpirun -np $numprocs ./a.out $ROPTS
3497	else
3498	(( i = 0 ))
3499	while (( i < ii ))
3500	do
3501	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3502	(( i = i + 1 ))
3503	done
3504
3505	echo "#!/bin/sh" > mpi_exec_shell
3506	echo " " >> mpi_exec_shell
3507	echo "set -u" >> mpi_exec_shell
3508	echo "F_ERRCNT=0" >> mpi_exec_shell
3509	echo "MPIPROGINV=YES" >> mpi_exec_shell
3510	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3511	echo "cpurest=$cpurest" >> mpi_exec_shell
3512	echo "fname=$fname" >> mpi_exec_shell
3513	echo "localhost=$localhost" >> mpi_exec_shell
3514	echo "return_addres=$return_addres" >> mpi_exec_shell
3515	echo "return_username=$return_username" >> mpi_exec_shell
3516	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3517	echo "write_binary=$write_binary" >> mpi_exec_shell
3518	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3519	echo " " >> mpi_exec_shell
3520	echo "export F_ERRCNT" >> mpi_exec_shell
3521	echo "export MPIPROGINV" >> mpi_exec_shell
3522	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3523	echo "export cpurest" >> mpi_exec_shell
3524	echo "export fname" >> mpi_exec_shell
3525	echo "export localhost" >> mpi_exec_shell
3526	echo "export return_addres" >> mpi_exec_shell
3527	echo "export return_username" >> mpi_exec_shell
3528	echo "export tasks_per_node" >> mpi_exec_shell
3529	echo "export write_binary" >> mpi_exec_shell
3530	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3531	echo " " >> mpi_exec_shell
3532	echo "exec ./a.out" >> mpi_exec_shell
3533
3534	chmod u+x mpi_exec_shell
3535	export MPIPROGINF=YES
3536	mpirun -f multinode_config &
3537	wait
3538
3539	fi
3540	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
3541	then
3542
3543	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3544	# DOES NOT EXIST
3545	if [[ $host != lcsgih && $host != lcsgib && $host != lckyu* ]]
3546	then
3547	if [[ -f $hostfile ]]
3548	then
3549	cp $hostfile hostfile
3550	(( ii = $numprocs / $threads_per_task ))
3551	else
3552	(( ii = 1 ))
3553	while (( ii <= $numprocs / $threads_per_task ))
3554	do
3555	echo $localhost_realname >> hostfile
3556	(( ii = ii + 1 ))
3557	done
3558	fi
3559	eval zeile=\"`head -n $ii hostfile`\"
3560	printf "\n *** running on: $zeile"
3561	fi
3562
3563	(( ii = $numprocs / $threads_per_task ))
3564	export OMP_NUM_THREADS=$threads_per_task
3565	# echo "*** OMP_NUM_THREADS=$OMP_NUM_THREADS"
3566	if [[ $threads_per_task != 1 ]]
3567	then
3568	# increase stack size to unlimited, because large runs
3569	# may abort otherwise
3570	ulimit -Ss unlimited
3571	printf "\n threads per task: $threads_per_task stacksize: unlimited"
3572	fi
3573	if [[ $run_coupled_model = false ]]
3574	then
3575	if [[ "$ocean_file_appendix" = true ]]
3576	then
3577	echo "precursor_ocean" > runfile_atmos
3578	else
3579	echo "precursor_atmos" > runfile_atmos
3580	fi
3581	printf "\n\n"
3582	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3583	then
3584	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3585	then
3586	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3587	# export MPI_DSM_DISTRIBUTE=1
3588	# MPI_DSM_CPULIST: pin MPI processes to cores
3589	if [[ $use_openmp = false ]]
3590	then
3591	if [[ "$sgi_feature" = ice2 ]]
3592	then
3593	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
3594	else
3595	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3596	fi
3597	else
3598	unset MPI_DSM_CPULIST
3599	fi
3600	# MPI_IB_RAILS: use both IB rails on ICE2
3601	export MPI_BUFS_PER_HOST=512
3602	export MPI_IB_RAILS=2
3603	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3604	export MPI_CONNECTIONS_THRESHOLD=8192
3605	# echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
3606	export MPI_TYPE_DEPTH=20
3607	# echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
3608	export MPI_GROUP_MAX=64
3609	# echo "*** MPI_GROUP_MAX=$MPI_GROUP_MAX"
3610	if [[ $use_openmp = true ]]
3611	then
3612	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3613	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3614	else
3615	mpiexec_mpt -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3616	fi
3617
3618	# next is test for openmp usage
3619	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3620	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
3621	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3622	then
3623	export MV2_NUM_PORTS=2
3624	# The default setting of MV2_CPU_MAPPING gives best results
3625	# export MV2_ENABLE_AFFINITY=1
3626	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3627	# if [[ "$sgi_feature" = ice2 ]]
3628	# then
3629	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
3630	# else
3631	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3632	# fi
3633	if [[ $use_openmp = true ]]
3634	then
3635	unset MV2_CPU_MAPPING
3636	export MV2_ENABLE_AFFINITY=0
3637	fi
3638	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
3639	echo "*** MV2_ENABLE_AFFINITY=$MV2_ENABLE_AFFINITY"
3640	if [[ $use_openmp = true ]]
3641	then
3642	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3643	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3644	else
3645	mpiexec -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3646	fi
3647	elif [[ "$mpilib" = impi ]]
3648	then
3649	echo "mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos"
3650	mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos
3651	fi
3652	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3653	then
3654	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3655	elif [[ $host = lcflow ]]
3656	then
3657	mpiexec -machinefile $TMPDIR/machines -n $ii -env I_MPI_FABRICS shm:ofa a.out < runfile_atmos $ROPTS
3658	elif [[ $host = lcsb ]]
3659	then
3660	mpirun_rsh -hostfile $PBS_NODEFILE -np `cat $PBS_NODEFILE \| wc -l` a.out < runfile_atmos $ROPTS
3661	elif [[ $host = lckiaps ]]
3662	then
3663	mpirun -np $ii -f $PBS_NODEFILE a.out < runfile_atmos $ROPTS
3664	elif [[ $host = lckyu* ]]
3665	then
3666	mpiexec -n $ii --stdin runfile_atmos ./a.out $ROPTS
3667	else
3668	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3669	fi
3670	else
3671
3672	# currently there is no full MPI-2 support on ICE and XT4
3673	(( iia = $numprocs_atmos / $threads_per_task ))
3674	(( iio = $numprocs_ocean / $threads_per_task ))
3675	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3676	printf "\n using $coupled_mode coupling"
3677	printf "\n\n"
3678
3679	if [[ $coupled_mode = "mpi2" ]]
3680	then
3681	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3682	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3683	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3684	then
3685
3686	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3687	then
3688	# export MPI_LAUNCH_TIMEOUT=360
3689	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3690	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3691	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3692	then
3693	# ulimit -s 300000 # A too large stack size causes problems
3694	# export MV2_NUM_PORTS=2
3695	# export MV2_CPU_MAPPING=0:1:2:3
3696	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3697	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3698	fi
3699
3700	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3701	then
3702
3703	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3704	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3705
3706	else
3707	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3708	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3709	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3710	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3711	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3712	fi
3713	wait
3714
3715	else
3716
3717	echo "coupled_run $iia $iio" > runfile_atmos
3718	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3719	then
3720
3721	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3722	then
3723	# export MPI_LAUNCH_TIMEOUT=360
3724	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3725	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3726	then
3727	# ulimit -s 300000 # A too large stack size causes problems
3728	# export MV2_NUM_PORTS=2
3729	# export MV2_CPU_MAPPING=0:1:2:3
3730	mpiexec ./a.out $ROPTS < runfile_atmos
3731	fi
3732
3733	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3734	then
3735
3736	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3737
3738	elif [[ $host = lck \|\| $host = lckordi ]]
3739	then
3740	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3741	fi
3742	wait
3743	fi
3744
3745	fi
3746	elif [[ $host = lckyoto ]]
3747	then
3748	set -xv
3749	export P4_RSHCOMMAND=plesh
3750	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
3751	if [[ "$ENVIRONMENT" = BATCH ]]
3752	then
3753	if [[ "$cond2" = fujitsu ]]
3754	then
3755	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
3756	elif [[ "cond2" = pgi ]]
3757	then
3758	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
3759	else
3760	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
3761	fi
3762	else
3763	if [[ "$cond2" = "" ]]
3764	then
3765	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
3766	else
3767	mpirun -np $numprocs ./a.out $ROPTS
3768	fi
3769	fi
3770	set +xv
3771	elif [[ $host = lctit ]]
3772	then
3773	export OMP_NUM_THREADS=$threads_per_task
3774	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3775	if [[ "$threads_per_task" != 1 ]]
3776	then
3777	export MV2_ENABLE_AFFINITY=0
3778	fi
3779	echo "----- PBS_NODEFILE content:"
3780	cat $PBS_NODEFILE
3781	echo "-----"
3782	(( ii = $numprocs / $threads_per_task ))
3783	echo "mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS"
3784	mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS
3785	else
3786	mpprun -n $numprocs a.out $ROPTS
3787	fi
3788	[[ $? != 0 ]] && execution_error=true
3789
3790
3791	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3792	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3793	then
3794	apprentice
3795	fi
3796	else
3797	a.out $ROPTS
3798	fi
3799	fi
3800	if [[ $? != 0 \|\| $execution_error = true ]]
3801	then
3802
3803	# ABBRUCH BEI LAUFZEITFEHLER
3804	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3805	printf "\n +++ runtime error occured"
3806	locat=execution
3807	exit
3808	else
3809	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3810	printf "\n$striche\n *** execution finished \n"
3811
3812	# Stop the dvr streaming server and process the dvr output in order
3813	# to create dvrs- and html-files containing all streams
3814	if [[ "$dvrserver_id" != "" ]]
3815	then
3816	kill $dvrserver_id
3817	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3818
3819	# If there is a directory, data have been output by the
3820	# streaming server. Otherwise, user has chosen dvrp_output=local
3821	if [[ -d DATA_DVR ]]
3822	then
3823
3824	# Add the current dvr configuration file to the dvr output
3825	# directory
3826	cp .dvrserver.config DATA_DVR
3827
3828	# Process the dvr output (option -s for also generating
3829	# sequence mode data)
3830	process_dvr_output -d DATA_DVR -f $fname -s
3831
3832	else
3833
3834	# Process the local output
3835	process_dvr_output -l -d DATA_DVR -f $fname
3836
3837	fi
3838
3839	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3840	then
3841
3842	# Process dvr output generated in local mode (dvrp_output=local)
3843	process_dvr_output -l -d DATA_DVR -f $fname
3844
3845	fi
3846	fi
3847
3848
3849
3850	# Call of combine_plot_fields in order to merge single files written
3851	# by each PE into one file.
3852	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
3853	then
3854	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
3855	printf "\n 2d- and/or 3d-data may be incomplete!"
3856	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
3857	elif [[ "$combine_plot_fields" == true ]]
3858	then
3859	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
3860	combine_plot_fields${block}.x
3861	else
3862	# Temporary solution to skip combine_plot_fields. This is necessary in case of huge amount of
3863	# data output. To do: extend this branch by creating a batch job for combine_plot_fields.
3864	printf "\n\n\n *** post-processing: skipping combine_plot_fields (-Z option set) ..."
3865	fi
3866
3867
3868
3869	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3870	(( i = 0 ))
3871	while (( i < ioc ))
3872	do
3873	(( i = i + 1 ))
3874	if (( i == 1 ))
3875	then
3876	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
3877	fi
3878	printf "\n >>> ${out_command[$i]}"
3879	eval ${out_command[$i]}
3880	if (( i == ioc ))
3881	then
3882	printf "\n$striche\n"
3883	fi
3884	done
3885
3886
3887	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
3888	if [[ $do_trace = true ]]
3889	then
3890	printf "\n\n"
3891	ls -al
3892	fi
3893
3894
3895
3896	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
3897	(( i = 0 ))
3898	while (( i < iout ))
3899	do
3900	(( i = i + 1 ))
3901	if (( i == 1 ))
3902	then
3903	printf "\n\n *** saving OUTPUT-files:\n$striche"
3904	fi
3905
3906	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3907	files_for_pes=false; filetyp=file
3908	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
3909	then
3910	files_for_pes=true; filetyp=directory
3911	actionout[$i]=""
3912	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
3913	then
3914	actionout[$i]=""
3915	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
3916	then
3917	files_for_pes=true; filetyp=directory
3918	actionout[$i]="ar"
3919	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
3920	then
3921	actionout[$i]="ar"
3922	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
3923	then
3924	files_for_pes=true; filetyp=directory
3925	actionout[$i]="fl"
3926	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
3927	then
3928	actionout[$i]="fl"
3929	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
3930	then
3931	files_for_pes=true; filetyp=directory
3932	actionout[$i]="tr"
3933	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
3934	then
3935	actionout[$i]="tr"
3936	fi
3937
3938	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
3939	then
3940	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
3941	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
3942	then
3943	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
3944	else
3945
3946
3947	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3948	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3949	# REMOTE-RECHNUNGEN
3950	if [[ "${actionout[$i]}" = tr ]]
3951	then
3952	if [[ $localhost != $fromhost ]]
3953	then
3954	if [[ $files_for_pes = false ]]
3955	then
3956	cps=""
3957	cst=""
3958	else
3959	cps=-c
3960	cst="/"
3961	fi
3962	if [[ $localhost = nech ]]
3963	then
3964
3965	# TRANSFER IN EIGENSTAENDIGEM JOB
3966	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3967	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3968	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3969	if [[ $files_for_pes = false ]]
3970	then
3971	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3972	else
3973	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
3974	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
3975	fi
3976
3977	echo "set -x" > transfer_${localout[$i]}
3978	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3979
3980	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
3981	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
3982	printf "\n or higher cycle\n"
3983	echo "batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3984
3985	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3986
3987	if [[ $localhost = nech ]]
3988	then
3989	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
3990	else
3991	if [[ "$LOGNAME" = b323013 ]]
3992	then
3993	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
3994	else
3995	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
3996	fi
3997	fi
3998
3999	else
4000
4001	# TRANSFER INNERHALB DIESES JOBS
4002	transfer_failed=false
4003	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
4004	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
4005	batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4006	[[ $? != 0 ]] && transfer_failed=true
4007
4008	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4009	# LOKALER MASCHINE ANLEGEN
4010	if [[ $transfer_failed = true ]]
4011	then
4012	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4013	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4014
4015	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4016	# ANLEGEN.
4017	eval local_catalog=${pathout[$i]}
4018	if [[ ! -d $local_catalog ]]
4019	then
4020	printf " *** local directory does not exist. Trying to create:\n"
4021	printf " $local_catalog \n"
4022	mkdir -p $local_catalog
4023	fi
4024	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4025	transfer_problems=true
4026	fi
4027	fi
4028	else
4029
4030	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
4031	actionout[$i]=""
4032	fi
4033	fi
4034
4035
4036	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
4037	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
4038	# REMOTE-RECHNUNGEN
4039	if [[ "${actionout[$i]}" = tra ]]
4040	then
4041	if [[ $localhost != $fromhost ]]
4042	then
4043	if [[ $localhost = ibmh \|\| $localhost = nech ]]
4044	then
4045
4046	# TRANSFER IN EIGENSTAENDIGEM JOB
4047	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4048	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4049	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4050	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4051
4052	echo "set -x" > transfer_${localout[$i]}
4053	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4054
4055	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
4056	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
4057	printf "\n or higher cycle\n"
4058	echo "batch_scp $PORTOPT -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4059
4060	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4061
4062	if [[ $localhost = nech ]]
4063	then
4064	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
4065	else
4066	if [[ $LOGNAME = b323013 ]]
4067	then
4068	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4069	else
4070	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4071	fi
4072	fi
4073
4074	else
4075
4076	# TRANSFER INNERHALB DIESES JOBS
4077	transfer_failed=false
4078	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
4079	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
4080	batch_scp $PORTOPT -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4081	[[ $? != 0 ]] && transfer_failed=true
4082
4083	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4084	# LOKALER MASCHINE ANLEGEN
4085	if [[ $transfer_failed = true ]]
4086	then
4087	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4088	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4089
4090	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4091	# ANLEGEN
4092	eval local_catalog=${pathout[$i]}
4093	if [[ ! -d $local_catalog ]]
4094	then
4095	printf " *** local directory does not exist. Trying to create:\n"
4096	printf " $local_catalog \n"
4097	mkdir -p $local_catalog
4098	fi
4099
4100	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4101	transfer_problems=true
4102	fi
4103	fi
4104	else
4105
4106	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
4107	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
4108	actionout[$i]=a
4109	fi
4110	fi
4111
4112
4113	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
4114	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
4115	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
4116	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
4117	if [[ "${actionout[$i]}" = fl ]]
4118	then
4119	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4120	chmod g+rx $tmp_data_catalog
4121	if [[ $files_for_pes = false ]]
4122	then
4123	printf "\n >>> OUTPUT: ${localout[$i]} to"
4124	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4125	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
4126	else
4127	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
4128	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4129	mkdir $tmp_data_catalog/${frelout[$i]}
4130	cd ${localout[$i]}
4131	for file in $(ls *)
4132	do
4133	ln -f $file $tmp_data_catalog/${frelout[$i]}
4134	done
4135	cd $TEMPDIR
4136	fi
4137
4138
4139	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
4140	if [[ $store_on_archive_system = true ]]
4141	then
4142
4143	if [[ $archive_system = asterix ]]
4144	then
4145	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4146	if [[ $files_for_pes = false ]]
4147	then
4148	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4149	else
4150	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4151	fi
4152	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4153	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
4154	echo "then" >> archive_${frelout[$i]}
4155	echo " do_stageout=false" >> archive_${frelout[$i]}
4156	echo "else" >> archive_${frelout[$i]}
4157	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
4158	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
4159	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
4160	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
4161	if [[ $files_for_pes = false ]]
4162	then
4163	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
4164	else
4165	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
4166	fi
4167	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
4168	echo "fi" >> archive_${frelout[$i]}
4169	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4170	elif [[ $archive_system = DMF ]]
4171	then
4172	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4173	if [[ $files_for_pes = false ]]
4174	then
4175	printf "\n +++ archiving of single files impossible with $archive_system !\n"
4176	locat=DMF
4177	exit
4178	else
4179	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
4180	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
4181	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
4182	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
4183	fi
4184	elif [[ $archive_system = tivoli ]]
4185	then
4186	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4187	if [[ $files_for_pes = false ]]
4188	then
4189	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4190	echo "set -x" >> archive_${frelout[$i]}
4191	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4192	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4193	else
4194
4195	echo "set -x" >> archive_${frelout[$i]}
4196	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
4197	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4198	cd $tmp_data_catalog
4199	all_files=`ls -1 ${frelout[$i]}/*`
4200	cd - > /dev/null
4201	(( inode = 0 ))
4202	(( tp1 = tasks_per_node + 1 ))
4203	while (( inode < nodes ))
4204	do
4205	# echo "*** all_files = \"$all_files\" "
4206	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4207	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4208	# echo "*** tasks_per_node = \"$tasks_per_node\" "
4209	# echo "*** files = \"$files\" "
4210	# echo "*** all_files = \"$all_files\" "
4211	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4212	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4213	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
4214	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4215	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4216	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4217	(( inode = inode + 1 ))
4218	done
4219	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4220	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4221	fi
4222	elif [[ $archive_system = ut ]]
4223	then
4224	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4225	if [[ $files_for_pes = false ]]
4226	then
4227	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4228	echo "set -x" >> archive_${frelout[$i]}
4229	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4230	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4231	else
4232
4233	echo "set -x" >> archive_${frelout[$i]}
4234	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
4235	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
4236	cd $tmp_data_catalog
4237	all_files=`ls -1 ${frelout[$i]}/*`
4238	cd - > /dev/null
4239	(( inode = 0 ))
4240	(( tp1 = tasks_per_node + 1 ))
4241	while (( inode < nodes ))
4242	do
4243	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4244	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4245	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4246	(( inode = inode + 1 ))
4247	done
4248	fi
4249	elif [[ $archive_system = none ]]
4250	then
4251	printf " +++ archiving on $localhost not available!\n"
4252	fi
4253
4254	if [[ $archive_system != none ]]
4255	then
4256	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
4257	then
4258	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4259	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4260	elif [[ $localhost = nech ]]
4261	then
4262	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
4263	fi
4264	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4265	fi
4266	else
4267	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
4268	fi
4269
4270
4271	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
4272	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4273	if [[ $files_for_pes = false ]]
4274	then
4275	cat /dev/null > ${pathout[$i]}
4276	else
4277	mkdir -p ${pathout[$i]}
4278	fi
4279
4280	fi
4281
4282
4283	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
4284	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
4285	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4286	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
4287	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
4288	# GEMAESSEN ARCHIVIERUNGEN GESETZT
4289	if [[ "${actionout[$i]}" = ar ]]
4290	then
4291	if [[ $files_for_pes = false ]]
4292	then
4293	printf "\n >>> OUTPUT: ${localout[$i]} to"
4294	printf "\n ${pathout[$i]}"
4295	printf "\n File will be copied to archive-system ($archive_system) !\n"
4296	else
4297	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
4298	printf "\n ${pathout[$i]}"
4299	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
4300	fi
4301	mv ${localout[$i]} ${frelout[$i]}
4302
4303	file_saved=false
4304
4305	if [[ $archive_system = asterix ]]
4306	then
4307	do_stageout=true
4308	(( stageout_anz = 0 ))
4309	while [[ $do_stageout = true ]]
4310	do
4311	if [[ $files_for_pes = false ]]
4312	then
4313	stageout ${frelout[$i]} > STAGE_OUTPUT
4314	else
4315	stageout -t ${frelout[$i]} > STAGE_OUTPUT
4316	fi
4317	cat STAGE_OUTPUT
4318	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
4319	then
4320	file_saved=true
4321	do_stageout=false
4322	else
4323	if [[ $files_for_pes = false ]]
4324	then
4325	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
4326	else
4327	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
4328	fi
4329	(( stageout_anz = stageout_anz + 1 ))
4330	if (( stageout_anz == 10 ))
4331	then
4332	printf "\n +++ stoped after 10 unsuccessful tries!"
4333	archive_save=false
4334	do_stageout=false
4335	else
4336	printf "\n *** new try to store on archive after 15 min:"
4337	sleep 900
4338	fi
4339	fi
4340	done
4341	elif [[ $archive_system = DMF ]]
4342	then
4343	if [[ $files_for_pes = false ]]
4344	then
4345	printf "\n +++ archiving of single files impossible on $archive_system!\n"
4346	locat=DMF
4347	exit
4348	else
4349	rm -rf $ARCHIVE/${frelout[$i]}
4350	cp -r ${frelout[$i]} $ARCHIVE
4351	fi
4352	file_saved=true
4353	elif [[ $archive_system = tivoli ]]
4354	then
4355	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4356	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4357	# GELEGT WERDEN
4358	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4359	chmod g+rx $tmp_data_catalog
4360	if [[ $files_for_pes = false ]]
4361	then
4362	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4363	else
4364	mkdir $tmp_data_catalog/${frelout[$i]}
4365	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4366	fi
4367
4368	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4369	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4370	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4371	if [[ $files_for_pes = false ]]
4372	then
4373	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4374	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4375	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4376	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4377	else
4378	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4379	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4380	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4381	fi
4382
4383	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4384	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4385	file_saved=true
4386
4387	elif [[ $archive_system = ut ]]
4388	then
4389	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4390	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4391	# GELEGT WERDEN
4392	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4393	chmod g+rx $tmp_data_catalog
4394	if [[ $files_for_pes = false ]]
4395	then
4396	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4397	else
4398	mkdir $tmp_data_catalog/${frelout[$i]}
4399	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4400	fi
4401
4402	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4403	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4404	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4405	if [[ $files_for_pes = false ]]
4406	then
4407	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4408	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4409	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4410	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4411	else
4412	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4413	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4414	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4415	fi
4416
4417	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
4418	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4419	file_saved=true
4420
4421	else
4422	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
4423	archive_save=false
4424	fi
4425	if [[ $file_saved = true ]]
4426	then
4427	if [[ $files_for_pes = false ]]
4428	then
4429	cat /dev/null > ${pathout[$i]}
4430	else
4431	mkdir -p ${pathout[$i]}
4432	fi
4433	fi
4434	fi
4435
4436	# APPEND AUF LOKALER MASCHINE
4437	if [[ "${actionout[$i]}" = "a" ]]
4438	then
4439	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4440	then
4441	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}.${extout[$i]}\n"
4442	cat ${localout[$i]} >> ${pathout[$i]}.${extout[$i]}
4443	else
4444	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
4445	cat ${localout[$i]} >> ${pathout[$i]}
4446	fi
4447	fi
4448
4449	# KOPIEREN AUF LOKALER MASCHINE
4450	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
4451	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
4452	then
4453
4454	# KOPIEREN AUF EINPROZESSORMASCHINE
4455	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4456	then
4457	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
4458	if [[ $link_local_output = true ]]
4459	then
4460	printf " using ln -f\n"
4461	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4462	fi
4463	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4464	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
4465	then
4466	if [[ $link_local_output = true ]]
4467	then
4468	printf " ln failed, using cp...\n"
4469	fi
4470	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4471	fi
4472	else
4473	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
4474	if [[ $link_local_output = true ]]
4475	then
4476	printf " using ln -f\n"
4477	ln -f ${localout[$i]} ${pathout[$i]}
4478	fi
4479	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4480	if [[ ! -f "${pathout[$i]}" ]]
4481	then
4482	if [[ $link_local_output = true ]]
4483	then
4484	printf " ln failed, using cp...\n"
4485	fi
4486	cp ${localout[$i]} ${pathout[$i]}
4487	fi
4488	fi
4489
4490	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
4491	then
4492
4493	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
4494	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
4495	# WIRD DANN KOPIERT
4496	# PER MOVE UMBENANNT WERDEN
4497	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4498	if [[ $link_local_output = true ]]
4499	then
4500	printf " using ln -f\n"
4501	mkdir ${pathout[$i]}
4502	cd ${localout[$i]}
4503	for file in $(ls *)
4504	do
4505	ln -f $file ${pathout[$i]}
4506	done
4507	cd $TEMPDIR
4508	fi
4509	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4510	if [[ ! -f "${pathout[$i]}/_0000" ]]
4511	then
4512	if [[ $link_local_output = true ]]
4513	then
4514	printf " ln failed for .../_0000, using cp...\n"
4515	fi
4516	cp -r ${localout[$i]} ${pathout[$i]}
4517	fi
4518
4519	fi
4520	fi
4521	done
4522	if (( i != 0 ))
4523	then
4524	if [[ $transfer_problems = true ]]
4525	then
4526	printf "\n$striche\n *** OUTPUT-files saved"
4527	printf "\n +++ WARNING: some data transfers failed! \n"
4528	else
4529	printf "\n$striche\n *** all OUTPUT-files saved \n"
4530	fi
4531	fi
4532
4533
4534	# EVENTUELL FOLGEJOB STARTEN
4535	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4536	if [[ -f CONTINUE_RUN ]]
4537	then
4538
4539	if [[ $archive_save = true ]]
4540	then
4541
4542	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4543	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4544	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4545	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4546	# HANDEN
4547	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4548	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4549	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4550	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4551	then
4552	mc=`echo $mc \| sed 's/#/f/g'`
4553	fi
4554
4555
4556	# JOB STARTEN
4557	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4558	echo " $mc"
4559	printf "\n$striche\n"
4560	if [[ $localhost != $fromhost ]]
4561	then
4562
4563	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibms \|\| $localhost = lcflow \|\| $localhost = lckyu* ]]
4564	then
4565	echo "*** ssh will be used to initiate restart-runs!"
4566	echo " return_addres=\"$return_addres\" "
4567	echo " return_username=\"$return_username\" "
4568	if [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4569	then
4570	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4571	else
4572	if [[ $localhost = ibmkisti ]]
4573	then
4574	ssh $SSH_PORTOPT $usern@gaiad "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4575	else
4576	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4577	fi
4578	fi
4579	else
4580	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4581	locat=restart; exit
4582	fi
4583
4584	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4585	# DER AKTUELLE JOB ENDET
4586	if [[ $queue = special1q ]]
4587	then
4588	sleep 120
4589	else
4590	sleep 30
4591	fi
4592
4593	else
4594
4595	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4596	# RUFEN WERDEN, AUSSER AUF lcfimm
4597	cd $LOCAL_PWD
4598	if [[ $localhost = lcfimm ]]
4599	then
4600	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4601	elif [[ $localhost = lckyuh ]]
4602	then
4603	printf "\n +++ WARNING: no restart mechanism available for host \"$localhost\" "
4604	printf "\n please restart job manually using command:\n"
4605	printf "\n \"$mc\" "
4606	else
4607	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4608	fi
4609	cd - > /dev/null
4610	fi
4611	if [[ $localhost = lckyuh ]]
4612	then
4613	printf "\n$striche\n *** restart-run to be initiated manually\n"
4614	else
4615	printf "\n$striche\n *** restart-run initiated \n"
4616	fi
4617
4618
4619	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4620	# GEHOLT WORDEN SIND, LOESCHEN
4621	(( i = 0 ))
4622	while (( i < iin ))
4623	do
4624	(( i = i + 1 ))
4625	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4626	then
4627	rm -r $tmp_data_catalog/${frelin[$i]}
4628	fi
4629	done
4630
4631	else
4632
4633	printf "\n +++ no restart-run possible, since errors occured"
4634	printf "\n during the archive process"
4635	fi
4636
4637	fi
4638
4639
4640
4641	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4642	if [[ "$email_notification" != "none" ]]
4643	then
4644
4645	if [[ $localhost != $fromhost ]]
4646	then
4647	if [[ -f CONTINUE_RUN ]]
4648	then
4649	echo "PALM restart run necessary" > email_text
4650	echo "description header of actual run:" >> email_text
4651	cat CONTINUE_RUN >> email_text
4652	echo "mrun-command to restart:" >> email_text
4653	echo "$mc" >> email_text
4654	else
4655	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4656	fi
4657	mail $email_notification < email_text
4658	printf "\n *** email notification sent to \"$email_notification\" "
4659	fi
4660	fi
4661
4662
4663
4664	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4665	cd $HOME
4666	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4667
4668	else
4669
4670
4671	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4672	# CHENDE AKTIONEN DURCHGEFUEHRT
4673
4674	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4675	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
4676	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4677	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4678	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4679	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4680	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4681	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4682	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4683	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4684	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4685	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4686	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4687	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4688	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4689	if [[ $use_openmp = true ]]
4690	then
4691	mrun_com=${mrun_com}" -O $threads_per_task"
4692	fi
4693	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4694	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
4695	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4696	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4697	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4698	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4699	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4700	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4701	[[ "$check_namelist_files" = false ]] && mrun_com=${mrun_com}" -z"
4702	[[ "$combine_plot_fields" = false ]] && mrun_com=${mrun_com}" -Z"
4703	[[ "$max_par_io_str" != "" ]] && mrun_com=${mrun_com}" -w $max_par_io_str"
4704	if [[ $do_remote = true ]]
4705	then
4706	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4707	fi
4708
4709
4710	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4711	jobfile=jobfile.$RANDOM
4712
4713
4714	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4715	echo "mkdir $TEMPDIR" >> $jobfile
4716	echo "cd $TEMPDIR" >> $jobfile
4717
4718
4719	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4720	if [[ $do_trace = true ]]
4721	then
4722	echo "set -x" >> $jobfile
4723	else
4724	echo "set +vx" >> $jobfile
4725	fi
4726
4727
4728	# initialize the environment and load modules
4729	if [[ "$init_cmds" != "" ]]
4730	then
4731	echo "$init_cmds" >> $jobfile
4732	fi
4733	if [[ "$module_calls" != "" ]]
4734	then
4735	echo "$module_calls" >> $jobfile
4736	fi
4737
4738
4739	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4740	# DATEI FUER DEN JOB
4741	if [[ $( echo $host \| cut -c1-5 ) = lcsgi \|\| $host = ibmkisti ]]
4742	then
4743
4744	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4745	# KOPIEREN
4746	if [[ $restart_run != true ]]
4747	then
4748	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4749	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4750	fi
4751
4752	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4753	# (BEI JOBS AUF LOKALEM RECHNER REICHT CP)
4754	echo "set -x" >> $jobfile
4755	if [[ $host = $localhost ]]
4756	then
4757	echo "cp -r $working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4758	else
4759	if [[ $host != ibmkisti ]]
4760	then
4761	echo "scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4762	else
4763	# on KISTI's IBM firewall is only opened on interactive node
4764	echo "localdir=\`pwd\`" >> $jobfile
4765	echo "ssh $SSH_PORTOPT $remote_username@gaiad \"cd \$localdir; scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
4766	fi
4767	fi
4768	echo "export SOURCES_COMPLETE=true" >> $jobfile
4769
4770	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4771	# ARBEITSVERZEICHNIS VERSCHIEBEN
4772	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4773	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4774	echo "execute_mrun=true" >> $jobfile
4775	echo " " >> $jobfile
4776
4777	else
4778
4779	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4780	# SOWIE GEGEBENENFALLS DES MAKEFILES
4781	if [[ $do_compile = true ]]
4782	then
4783
4784	source_catalog=SOURCES_FOR_RUN_$fname
4785
4786	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4787	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4788	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4789	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4790	echo "export SOURCES_COMPLETE=true" >> $jobfile
4791	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4792
4793	for filename in $source_list
4794	do
4795	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4796	echo "cat > $filename << \"%END%\"" >> $jobfile
4797	cat $source_catalog/$filename >> $jobfile
4798	echo " " >> $jobfile
4799	echo "%END%" >> $jobfile
4800	echo " " >> $jobfile
4801	done
4802
4803	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4804	echo "cat > Makefile << \"%END%\"" >> $jobfile
4805	cat $source_catalog/Makefile >> $jobfile
4806	echo " " >> $jobfile
4807	echo "%END%" >> $jobfile
4808	echo " " >> $jobfile
4809
4810	echo "cd - > /dev/null" >> $jobfile
4811
4812	fi
4813
4814
4815	# ABSPEICHERN DER KONFIGURATIONSDATEI
4816	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4817	# Lines with #$ coming from the svn keyword substitution are
4818	# removed from the config file in order to avoid problems
4819	# with the SGE batch system
4820	echo "cat > $config_file << \"%END%\"" >> $jobfile
4821	if [[ $host = lckyuh ]]
4822	then
4823	# no cross compiler on compute node
4824	sed 's/frtpx/frt/g' $config_file >> $jobfile
4825	else
4826	sed 's/#$.*//g' $config_file >> $jobfile
4827	fi
4828	echo "%END%" >> $jobfile
4829	echo " " >> $jobfile
4830
4831
4832	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
4833	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4834	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
4835	if [[ $host = lckyuh ]]
4836	then
4837	sed 's/\/bin\/ksh/\/bin\/bash/g' ${PALM_BIN}/$mrun_script_name >> $jobfile
4838	else
4839	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
4840	fi
4841	echo "%END%" >> $jobfile
4842	echo "chmod u+x $mrun_script_name" >> $jobfile
4843	echo "execute_mrun=true" >> $jobfile
4844	echo " " >> $jobfile
4845
4846	fi
4847
4848
4849	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
4850	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
4851	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
4852	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
4853	if [[ $do_remote = true ]]
4854	then
4855	(( i = 0 ))
4856	while (( i < iin ))
4857	do
4858	(( i = i + 1 ))
4859	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
4860	if [[ "${transin[$i]}" = job ]]
4861	then
4862	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
4863	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
4864	echo " " >> $jobfile
4865	echo "%END%" >> $jobfile
4866	else
4867	echo "batch_scp $PORTOPT -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
4868	fi
4869
4870	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
4871	echo "if [[ \$? = 1 ]]" >> $jobfile
4872	echo "then" >> $jobfile
4873	echo " echo \" \" " >> $jobfile
4874	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
4875	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
4876	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
4877	echo " execute_mrun=false" >> $jobfile
4878	echo "fi" >> $jobfile
4879	done
4880	fi
4881
4882	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
4883	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
4884	echo "LOCAL_PWD=$working_directory" >> $jobfile
4885	echo "export LOCAL_PWD" >> $jobfile
4886
4887	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
4888	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
4889	echo "export LOCAL_MRUN_PATH" >> $jobfile
4890
4891	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
4892	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
4893	then
4894	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
4895	elif [[ $host = lcflow \|\| $localhost = lcflow ]]
4896	then
4897	echo "export PALM_BIN=$PALM_BIN" \| sed -e 's:'$HOME':$HOME:' >> $jobfile
4898	echo "export PATH=\$PATH:\$PALM_BIN" >> $jobfile
4899	fi
4900
4901	# MRUN AUF ZIELRECHNER AUFRUFEN (queue is workaround for ibmkisti)
4902	echo "set -x" >> $jobfile
4903	echo "queue=$queue" >> $jobfile
4904	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
4905	echo 'ls -al; echo `pwd`' >> $jobfile
4906	echo "cd \$HOME" >> $jobfile
4907	echo "rm -rf $TEMPDIR" >> $jobfile
4908
4909
4910
4911
4912	# JOB PER SUBJOB STARTEN
4913	if [[ $silent = false ]]
4914	then
4915	printf "\n "
4916	else
4917	printf "\n\n"
4918	fi
4919
4920	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $PORTOPT $jobfile
4921	rm -rf $jobfile
4922
4923
4924	fi # ENDE REMOTE-TEIL
4925
4926
4927
4928	# ENDE DER PROZEDUR

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