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source: palm/trunk/SCRIPTS/mrun @ 1104

Last change on this file since 1104 was 1104, checked in by raasch, 11 years ago
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1	#!/bin/ksh
2
3	# mrun - script for running PALM jobs
4
5	#--------------------------------------------------------------------------------#
6	# This file is part of PALM.
7	#
8	# PALM is free software: you can redistribute it and/or modify it under the terms
9	# of the GNU General Public License as published by the Free Software Foundation,
10	# either version 3 of the License, or (at your option) any later version.
11	#
12	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
13	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
14	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
15	#
16	# You should have received a copy of the GNU General Public License along with
17	# PALM. If not, see <http://www.gnu.org/licenses/>.
18	#
19	# Copyright 1997-2012 Leibniz University Hannover
20	#--------------------------------------------------------------------------------#
21	#
22	# Current revisions:
23	# ------------------
24	#
25	#
26	# Former revisions:
27	# -----------------
28	# $Id: mrun 1104 2013-02-20 02:37:12Z raasch $
29	#
30	# 1103 2013-02-20 02:15:53Z raasch
31	# default script runs again under ksh, because of unsolved problems with read
32	# from stdin: when bash script is called from a ksh, message "read error: 0:
33	# Resource temporarily unavailable" appears and script does not stop,
34	# further bash compatibility adjustments,
35	# shebang line replaced by /bin/bash when running jobs on lckyuh; no restarts
36	# on lckyuh, but mrun does not terminate and issues a warning instead
37	#
38	# 1101 2013-02-17 10:20:21Z raasch
39	# script now running under bash instead of ksh, which required small adjustments
40	# (output formatting with printf instead "typeset -L/-R", print replaced by echo,
41	# read from stdin),
42	# cross compilername on lckyuh compute nodes replaced by real compiler name
43	#
44	# 1099 2013-02-10 01:47:43Z raasch
45	# adjustments for Kyushu-University computing center (lckyuh - hayaka)
46	# and for Forwind cluster (lcflow)
47	# small further adjustments for lckyut
48	#
49	# 1094 2013-02-03 01:52:12Z raasch
50	# explicit ssh/scp port can be set in config file with environment variable
51	# scp_port. This port is handled to all ssh/scp/batch_scp calls.
52	# decalpha parts (yonsei) removed
53	#
54	# 2013-02-02 07:06:13Z raasch
55	# adjustments for Kyushu-University computing center (lckyut - tatara)
56	#
57	# 1083 2013-01-04 10:22:09Z maronga
58	# bugfix in parameter file check (read %cpp_options was missing)
59	#
60	# 1069 2012-11-28 16:18:43Z maronga
61	# bugfix: coupling mode was always set to mpi2, typos removed
62	#
63	# 1058 2012-11-21 07:00:35Z raasch
64	# Intel inspector (inspxe) is given the number of PEs instead of the number of
65	# nodes
66	#
67	# 1046 2012-11-09 14:38:45Z maronga
68	# code put under GPL (PALM 3.9)
69	#
70	# 21/03/94 - Siggi - first version finished
71	# 03/03/94 - Siggi - script development started
72	#
73	#--------------------------------------------------------------------------------#
74	# mrun - script for running PALM jobs
75	#--------------------------------------------------------------------------------#
76
77
78
79	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
80
81	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
82	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
83	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
84
85	AddFilenames=""
86	additional_conditions=""
87	add_source_path=""
88	afname=""
89	archive_save=true
90	archive_system=none
91	check_namelist_files=true
92	combine_plot_fields=true
93	compiler_name=""
94	cond1=""
95	cond2=""
96	config_file=.mrun.config
97	coupled_dist=""
98	coupled_mode="mpi1"
99	cpp_opts=""
100	cpp_options=""
101	cpumax=0
102	cpurest=0
103	delete_temporary_catalog=true
104	do_batch=false
105	do_compile=true
106	do_remote=false
107	do_stagein=true
108	do_stageout=true
109	do_trace=false
110	email_notification="none"
111	exclude=""
112	executable=""
113	execution_error=false
114	fimm=false
115	fname=test
116	fromhost=""
117	global_revision=""
118	group_number=none
119	host=""
120	host_file=""
121	hp=""
122	ignore_archive_error=false
123	input_list=""
124	interpreted_config_file=""
125	job_catalog="~/job_queue"
126	job_on_file=""
127	keep_data_from_previous_run=false
128	link_local_input=false
129	link_local_output=false
130	localhost_realname=$(hostname)
131	local_compile=false
132	local_dvrserver_running=.FALSE.
133	locat=normal
134	mainprog=""
135	makefile=""
136	max_par_io_str=""
137	mc=$0
138	while [[ $(echo $mc \| grep -c "/") != 0 ]]
139	do
140	mc=`echo $mc \| cut -f2- -d"/"`
141	done
142	module_calls=""
143	mrun_script_name=$mc
144	netcdf_inc=""
145	netcdf_lib=""
146	netcdf_support=false
147	node_usage=default
148	numprocs=""
149	numprocs_atmos=0
150	numprocs_ocean=0
151	OOPT=""
152	openmp=false
153	output_list=""
154	package_list=""
155	punkte="..........................................................."
156	queue=none
157	read_from_config=""
158	restart_run=false
159	if [[ `hostname` = rte10 ]]
160	then
161	return_addres=133.5.185.60
162	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
163	elif [[ `hostname` = climate0 ]]
164	then
165	return_addres=165.132.26.68
166	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
167	elif [[ `hostname` = urban00 ]]
168	then
169	return_addres=147.46.30.151
170	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
171	else
172	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
173	fi
174	return_password=""
175	return_username=$LOGNAME
176	remotecall=false
177	remote_username=""
178	run_coupled_model=false
179	run_mode=""
180	scirocco=false
181	store_on_archive_system=false
182	striche=" ----------------------------------------------------------------------------"
183	silent=false
184	source_list=""
185	source_path=SOURCE
186	tasks_per_node=""
187	threads_per_task=1
188	tmpcreate=false
189	tmp_data_catalog=""
190	transfer_problems=false
191	usern=$LOGNAME
192	use_openmp=false
193	version="MRUN 2.0 Rev$Rev: 1104 $"
194	working_directory=`pwd`
195	TOPT=""
196	XOPT=""
197	zeit=$( date \| cut -c 12-19 )
198
199	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
200	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek last_char maxcycle minuten nodes pes sekunden tp1
201
202
203
204
205	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
206	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
207
208	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
209	# EXPORTIERT WERDEN
210	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
211	export group_number input_list memory numprocs output_list queue run_mode
212
213
214
215	# FEHLERBEHANDLUNG
216	# BEI EXIT:
217	trap 'rm -rf $working_directory/tmp_mrun
218	if [[ $locat != localhost ]]
219	then
220	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
221	# then
222	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
223	#MRUN-calls on $localhost
224	#
225	#date and time user localhost remotehost termination mrun-command
226	#--------------------------------------------------------------------------------------------------------------------
227	#%STATEND%
228	# chmod 666 ${mrun_path}/statistik/mrun_statistik
229	# fi
230	#
231	# # EINTRAG IN DIE STATISTIK-DATEI
232	# string1=`date` #-L35
233	# string2=$usern #-L12
234	# string3=$localhost_realname #-L12
235	# string4=$host #-L12
236	# string5=$locat #-L12
237	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
238	# then
239	# if [[ $do_batch = true ]]
240	# then
241	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
242	# else
243	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
244	# fi
245	# fi
246	echo " " > /dev/null
247	fi
248
249	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
250	then
251
252	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
253	(( i = 0 ))
254	while (( i < iec ))
255	do
256	(( i = i + 1 ))
257	printf "\n *** Execution of ERROR-command:\n"
258	printf " >>> ${err_command[$i]}\n"
259	eval ${err_command[$i]}
260	done
261	if [[ -n $interpreted_config_file ]]
262	then
263	rm -rf $interpreted_config_file
264	fi
265	if [[ -n .mrun_environment ]]
266	then
267	rm -rf .mrun_environment
268	fi
269	if [[ $tmpcreate = true ]]
270	then
271	printf "\n *** Contents of \"$TEMPDIR\":\n"
272	ls -al; cd
273	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
274	fi
275	if [[ "$dvrserver_id" != "" ]]
276	then
277	echo "+++ killing dvrserver_id=$dvrserver_id"
278	kill $dvrserver_id
279	fi
280	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
281	then
282	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
283	fi
284	printf "\n\n+++ MRUN killed \n\n"
285	elif [[ $locat != control_c ]]
286	then
287	printf "\n\n --> all actions finished\n\n"
288	printf " Bye, bye $usern !!\n\n"
289	fi' exit
290
291
292	# BEI TERMINAL-BREAK:
293	trap 'rm -rf $working_directory/tmp_mrun
294	rm -rf $working_directory/tmp_check_namelist_files
295	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
296	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
297	then
298	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
299	fi
300	if [[ "$dvrserver_id" != "" ]]
301	then
302	echo "+++ killing dvrserver_id=$dvrserver_id"
303	kill $dvrserver_id
304	fi
305	printf "\n+++ MRUN killed by \"^C\" \n\n"
306	locat=control_c
307	exit
308	' 2
309
310
311	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
312	# BEEN SET
313	if [[ "$PALM_BIN" = "" ]]
314	then
315	printf "\n +++ environment variable PALM_BIN has not been set"
316	printf "\n please set it to the directory where the PALM scripts are located"
317	locat=palm_bin; exit
318	fi
319	export PATH=$PALM_BIN:$PATH
320
321
322
323	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
324	# FUER FOLGEJOBS BENOETIGT WIRD
325	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vw:xX:yY:zZ option
326	do
327	case $option in
328	(a) afname=$OPTARG;;
329	(A) store_on_archive_system=true; mc="$mc -A";;
330	(b) do_batch=true; mc="$mc -b";;
331	(B) delete_temporary_catalog=false; mc="$mc -B";;
332	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
333	(C) restart_run=true; mc="$mc -C";;
334	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
335	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
336	(F) job_on_file="-D"; mc="$mc -F";;
337	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
338	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
339	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
340	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
341	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
342	(I) ignore_archive_error=true; mc="$mc -I";;
343	(k) keep_data_from_previous_run=true; mc="$mc -k";;
344	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
345	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
346	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
347	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
348	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
349	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
350	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
351	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
352	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
353	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
354	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
355	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
356	(S) read_from_config=false; mc="$mc -S";;
357	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
358	(T) mrun_tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
359	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
360	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
361	(v) silent=true; mc="$mc -v";;
362	(w) max_par_io_str=$OPTARG; mc="$mc -w$OPTARG";;
363	(x) do_trace=true;set -x; mc="$mc -x";;
364	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
365	(y) ocean_file_appendix=true; mc="$mc -y";;
366	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
367	(z) check_namelist_files=false; mc="$mc -z";;
368	(Z) combine_plot_fields=false; mc="$mc -Z";;
369	(\?) printf "\n +++ unknown option $OPTARG \n"
370	printf "\n --> type \"$0 ?\" for available options \n"
371	locat=parameter;exit;;
372	esac
373	done
374
375
376	# EVTL. POSITIONSPARAMETER EINLESEN
377	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
378	(( to_shift = $OPTIND - 1 ))
379	shift $to_shift
380
381	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
382	if [[ "$1" = "?" ]]
383	then
384	(printf "\n *** mrun can be called as follows:\n"
385	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. -z -Z <modus> \n"
386	printf "\n Description of available options:\n"
387	printf "\n Option Description Default-Value"
388	printf "\n -a base name of input files equiv. -d"
389	printf "\n -A archiving when using file-attribute fl"
390	printf "\n -b batch-job on local machine ---"
391	printf "\n -B do not delete temporary directory at end ---"
392	printf "\n -c configuration file .mrun.config"
393	printf "\n -d base name of files attached to program test"
394	printf "\n -D preprocessor(cpp)-directives \"\" "
395	printf "\n -F create remote job file only ---"
396	printf "\n -h execution host $localhost_realname"
397	printf "\n -i INPUT control list \"\" "
398	printf "\n -I archiving errors of previous batch-jobs"
399	printf "\n will be ignored"
400	printf "\n -k keep data from previous run"
401	printf "\n -K additional conditions for controling"
402	printf "\n usage of conditional code and"
403	printf "\n env-variables in configuration file \"\" "
404	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
405	printf "\n -M Makefile name Makefile"
406	printf "\n -n node usage (shared/not_shared) depending on -h"
407	printf "\n -o OUTPUT control list \"\" "
408	printf "\n -O use OpenMP ---"
409	printf "\n -p software package list \"\" "
410	printf "\n -q queue \"$queue\" "
411	printf "\n -r run control list (combines -i -o) \"\" "
412	printf "\n -s filenames of routines to be compiled \"\" "
413	printf "\n must end with .f, .f90, .F, or .c !"
414	printf "\n use \"..\" for more than one file and wildcards"
415	printf "\n -s LM compiles all locally modified files"
416	printf "\n -S config file interpreted by shellscript ---"
417	printf "\n -t allowed cpu-time in seconds (batch) 0"
418	printf "\n -T tasks per node depending on -h"
419	printf "\n -u username on remote machine \"\" "
420	printf "\n -v no prompt for confirmation ---"
421	printf "\n -w maximum parallel io streams as given by -X"
422	printf "\n -x tracing of mrun for debug purposes ---"
423	printf "\n -X # of processors (on parallel machines) 1"
424	printf "\n -y add appendix \"_O\" to all local output"
425	printf "\n files (ocean precursor runs followed by"
426	printf "\n coupled atmosphere-ocean runs) ---"
427	printf "\n -Y run coupled model, \"#1 #2\" with"
428	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
429	printf "\n -z disable a priori parameter file check ---"
430	printf "\n -Z skip combine_plot_fields at the end of "
431	printf "\n the simulation ---"
432	printf "\n "
433	printf "\n Possible values of positional parameter <modus>:"
434	printf "\n \"?\" - this outline \n\n") \| more
435	exit
436	elif [[ "$1" != "" ]]
437	then
438	printf "\n +++ positional parameter $1 unknown \n"
439	locat=parameter; exit
440	fi
441
442
443
444	# KURZE STARTMELDUNG
445	printf "\n*** $version "
446	printf "\n will be executed. Please wait ..."
447
448
449
450	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
451	if [[ ! -f $config_file ]]
452	then
453	printf "\n\n +++ configuration file: "
454	printf "\n $config_file"
455	printf "\n does not exist"
456	locat=connect; exit
457	fi
458
459
460	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
461	line=""
462	grep "%host_identifier" $config_file > tmp_mrun
463	while read line
464	do
465	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
466	then
467	HOSTNAME=`echo $line \| cut -d" " -s -f2`
468	host_identifier=`echo $line \| cut -d" " -s -f3`
469	if [[ $localhost_realname = $HOSTNAME ]]
470	then
471	localhost=$host_identifier
472	break
473	fi
474	fi
475	done < tmp_mrun
476
477	if [[ "$localhost" = "" ]]
478	then
479	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
480	printf "\n for local host \"$localhost_realname\"."
481	printf "\n Please add line"
482	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
483	printf "\n to the configuration file."
484	locat=localhost; exit
485	fi
486
487
488	# HOSTSPEZIFISCHE VARIABLEN SETZEN
489	case $localhost_realname in
490	(r1\|r2\|h01\|b01) archive_system=tivoli;;
491	(cs*) archive_system=ut;;
492	(fimm.bccs.uib.no) fimm=true;;
493	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
494	(scirocco) scirocco=true;;
495	esac
496
497
498
499	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
500	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
501	[[ "$afname" = "" ]] && afname=$fname
502
503
504	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
505	if [[ "$run_mode" != "" ]]
506	then
507	input_list="$input_list $run_mode"
508	output_list="$output_list $run_mode"
509	fi
510
511
512	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
513	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
514	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
515	# STARTET)
516	if [[ "$fromhost" = "" ]]
517	then
518	fromhost=$localhost
519	fi
520
521
522	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
523	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
524	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
525	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
526	if [[ -n $host && "$host" != $localhost ]]
527	then
528	do_batch=true
529	do_remote=true
530	case $host in
531	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|nech\|necriam\|lcflow\|lckyoto\|lcsgib\|lcsgih\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
532	(*) printf "\n"
533	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
534	printf "\n is not available"
535	locat=nqs; (( iec = 0 )); exit;;
536	esac
537	else
538	host=$localhost
539	fi
540
541
542	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
543	if [[ -n $additional_conditions ]]
544	then
545	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
546	cond1=`echo $additional_conditions \| cut -d" " -f1`
547	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
548	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
549	if [[ -n $dummy ]]
550	then
551	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
552	locat=options; exit
553	fi
554	block=_$cond1
555	[[ -n $cond2 ]] && block=${block}_$cond2
556	fi
557
558
559	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
560	if [[ $run_coupled_model = true ]]
561	then
562
563	if [[ -n $coupled_dist ]]
564	then
565
566	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
567	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
568
569	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
570	then
571
572	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
573	printf "\n PEs (total) : $numprocs"
574	printf "\n PEs (atmosphere): $numprocs_atmos"
575	printf "\n PEs (ocean) : $numprocs_ocean"
576	locat=coupling; exit
577
578	fi
579
580	else
581
582	(( numprocs_ocean = $numprocs / 2 ))
583	(( numprocs_atmos = $numprocs / 2 ))
584
585	fi
586	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
587
588	# GET coupled_mode FROM THE CONFIG FILE
589	line=""
590	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
591	while read line
592	do
593	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && $(echo $line \| cut -d" " -s -f4) = $cond1 && $(echo $line \| cut -d" " -s -f4) = $cond2 ]]
594	then
595	coupled_mode="mpi2"
596	fi
597	done < tmp_mrun
598
599	fi
600
601
602	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
603	# ARCHIVIERUNG FEHLGESCHLAGEN IST
604	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
605	then
606	if [[ $ignore_archive_error = false ]]
607	then
608	printf "\n +++ data archiving of previous run failed"
609	printf "\n see directory \~/job_queue on remote machine"
610	locat=archive; exit
611	else
612	printf "\n +++ warning: data archiving in a previous run failed"
613	printf "\n MRUN continues, trying to get backup copy"
614	fi
615	fi
616
617
618	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
619	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
620	mrun_memory=$memory
621	mrun_group_number=$group_number
622	mrun_cpumax=$cpumax
623	mrun_numprocs=$numprocs
624
625
626	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
627	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
628	if [[ "$read_from_config" = false ]]
629	then
630
631	[[ $silent = false ]] && printf "\n Reading the configuration file... "
632	while read zeile
633	do
634	[[ $silent = false ]] && printf "."
635
636
637	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
638	# ERSETZEN
639	eval zeile=\"$zeile\"
640
641
642	# INTERPRETATION DER ZEILE
643	if [[ "$(echo $zeile)" = "" ]]
644	then
645	# LEERZEILE, KEINE AKTION
646	continue
647
648	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
649	then
650
651	# ZEILE IST KOMMENTARZEILE
652	true
653
654	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
655	then
656
657	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
658	zeile=$(echo $zeile \| cut -c2-)
659	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
660	var=`echo $zeile \| cut -d" " -f1`
661	value=`echo $zeile \| cut -d" " -s -f2`
662	for_host=`echo $zeile \| cut -d" " -s -f3`
663	for_cond1=`echo $zeile \| cut -d" " -s -f4`
664	for_cond2=`echo $zeile \| cut -d" " -s -f5`
665
666	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
667	then
668
669	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
670	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
671	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
672
673
674	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
675	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
676	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
677	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
678	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
679	# KONFIGURATIONSDATEI
680	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
681	then
682	eval $var=\$value
683
684	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
685	if [[ $do_trace = true ]]
686	then
687	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
688	fi
689	fi
690
691	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
692	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
693	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
694	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
695	if [[ $var = host ]]
696	then
697	if [[ -n $host && "$host" != $localhost ]]
698	then
699	do_batch=true
700	do_remote=true
701	case $host in
702	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lcflow\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
703	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
704	printf "\n is not available"
705	locat=nqs; exit;;
706	esac
707	else
708	host=$localhost
709	fi
710	fi
711
712	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
713	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
714	# DEN PROGRAMMEN BENOETIGT WERDEN
715	export $var
716	fi
717
718
719
720
721	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
722	then
723
724	# ZEILE DEFINIERT ERROR-KOMMANDO
725	(( iec = iec + 1 ))
726	zeile=$(echo $zeile \| cut -c4-)
727	err_command[$iec]="$zeile"
728
729	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
730	then
731
732	# ZEILE DEFINIERT INPUT-KOMMANDO
733	(( iic = iic + 1 ))
734	zeile=$(echo $zeile \| cut -c4-)
735	in_command[$iic]="$zeile"
736
737	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
738	then
739
740	# ZEILE DEFINIERT OUTPUT-KOMMANDO
741	(( ioc = ioc + 1 ))
742	zeile=$(echo $zeile \| cut -c4-)
743	out_command[$ioc]="$zeile"
744
745	else
746
747	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
748	# s2a: in/out - Feld
749	# s2b: loc - Feld (optional)
750	# s2c: tr/ar - Feld (optional)
751	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
752	s1=`echo $zeile \| cut -d" " -f1`
753	s2=`echo $zeile \| cut -d" " -s -f2`
754	s2a=$(echo $s2 \| cut -d":" -f1)
755	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
756	then
757	s2b=""
758	s2c=""
759	else
760	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
761	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
762	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
763	fi
764	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
765	s3=`echo $zeile \| cut -d" " -f3`
766	s4=`echo $zeile \| cut -d" " -s -f4`
767	s5=`echo $zeile \| cut -d" " -s -f5`
768	s6=`echo $zeile \| cut -d" " -s -f6`
769
770
771	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
772	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
773	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
774	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
775	# HANDEN SEIN MUSS (D.H. s2b = loc)
776	IFSALT="$IFS"; IFS="$IFS:"
777	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
778	then
779	found=false
780	for actual in $input_list
781	do
782	for formal in $s3
783	do
784	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
785	done
786	done
787	if [[ $found = true ]]
788	then
789	(( iin = iin + 1 ))
790	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
791	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
792	extin[$iin]=$s6
793	fi
794	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
795	then
796	found=false
797	for actual in $output_list
798	do
799	for formal in $s3
800	do
801	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
802	done
803	done
804	if [[ $found = true ]]
805	then
806	(( iout = iout + 1 ))
807	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
808	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
809	fi
810	elif [[ "$s2a" != in && "$s2a" != out ]]
811	then
812	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
813	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
814	locat=connect; exit
815	fi
816	IFS="$IFSALT"
817	fi
818	done < $config_file
819
820	else
821
822
823	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
824	[[ $silent = false ]] && printf "..."
825	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
826	export interpreted_config_file=.icf.$RANDOM
827
828
829
830	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
831	# VERFUEGUNG STELLEN
832	cat > .mrun_environment << %%END%%
833	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
834	config_file = '$config_file', do_remote = '$do_remote',
835	do_trace = '$do_trace', host = '$host',
836	input_list = '$input_list', icf = '$interpreted_config_file',
837	localhost = '$localhost', output_list = '$output_list' /
838
839	%%END%%
840
841	if [[ $localhost_realname = "sx-fep" ]]
842	then
843	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
844	else
845
846	if [[ "$host" != $localhost ]]
847	then
848
849	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
850	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
851	if [[ $? != 0 ]]
852	then
853	printf "\n\n +++ no interpret_config found"
854	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
855	locat=interpret_config; exit
856	fi
857	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
858	$interpret_config_executable
859
860	else
861
862	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
863	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
864	then
865	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
866	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
867	locat=interpret_config; exit
868	else
869	interpret_config${block}.x
870	fi
871
872	fi
873	fi
874	rm .mrun_environment
875
876
877	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
878	chmod u+x $interpreted_config_file
879	export PATH=$PATH:.
880	. $interpreted_config_file
881	rm $interpreted_config_file
882
883	fi
884
885
886	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
887	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
888	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
889	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
890	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
891	[[ "$max_par_io_str" != "" ]] && maximum_parallel_io_streams=$max_par_io_str
892	[[ "$mrun_tasks_per_node" != "" ]] && tasks_per_node=$mrun_tasks_per_node
893
894
895	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
896	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
897	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
898	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
899	if [[ "$SOURCES_COMPLETE" = "" ]]
900	then
901
902	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
903	# VEREINBART WURDE
904	source_path=""
905	line=""
906	grep "%source_path" $config_file > tmp_mrun
907	while read line
908	do
909	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
910	then
911	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
912	then
913	global_source_path=`echo $line \| cut -d" " -f2`
914	fi
915	fi
916	done < tmp_mrun
917
918	line=""
919	found=false
920	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
921	while read line
922	do
923	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
924	then
925	if [[ $found = true ]]
926	then
927	printf "\n\n +++ more than one source path found in configuration file"
928	printf "\n for local host \"$localhost\" "
929	locat=source_path; exit
930	fi
931	source_path=`echo $line \| cut -d" " -f2`
932	found=true
933	fi
934	done < tmp_mrun
935	rm tmp_mrun
936
937	if [[ "$source_path" = "" ]]
938	then
939	if [[ "$global_source_path" != "" ]]
940	then
941	source_path=$global_source_path
942	else
943	printf "\n\n +++ no source path found in configuration file"
944	printf "\n for local host \"$localhost\" "
945	locat=source_path; exit
946	fi
947	fi
948	eval source_path=$source_path
949
950	if [[ ! -d $source_path ]]
951	then
952	printf "\n\n +++ source path \"$source_path\" on local host"
953	printf "\n \"$localhost\" does not exist"
954	locat=source_path; exit
955	fi
956
957	fi
958
959
960	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
961	# DURCH OPTION -G MITGETEILT)
962	if [[ "$global_revision" = "" && $host != "ibmkisti" ]]
963	then
964	global_revision=`svnversion $source_path 2>/dev/null`
965	global_revision="Rev: $global_revision"
966	fi
967
968
969	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
970	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
971	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
972	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
973	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
974	if [[ -n $host && "$host" != $localhost ]]
975	then
976	do_batch=true
977	do_remote=true
978	case $host in
979	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lcflow\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
980	(*) printf "\n"
981	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
982	printf "\n is not available"
983	locat=nqs; (( iec = 0 )); exit;;
984	esac
985	else
986	host=$localhost
987	fi
988
989
990	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
991	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
992	then
993
994	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
995	if [[ ! -n $numprocs ]]
996	then
997	printf "\n"
998	printf "\n +++ option \"-K parallel\" requires additional specification"
999	printf "\n of the number of processors to be used by"
1000	printf "\n mrun-option \"-X\" or by environment-variable"
1001	printf "\n \"numprocs\" in the configuration file"
1002	locat=numprocs; (( iec = 0 )); exit
1003	fi
1004
1005	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
1006	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
1007	# GESAMTPROZESSORANZAHL IST
1008	if [[ "$tasks_per_node" = "" && $host != lcflow && $host != lcxt5m ]]
1009	then
1010	printf "\n"
1011	printf "\n +++ option \"-T\" (tasks per node) is missing"
1012	printf "\n set -T option or define tasks_per_node in the config file"
1013	locat=tasks_per_node; (( iec = 0 )); exit
1014	fi
1015	if [[ $host != lcflow && $host != lcxt5m ]]
1016	then
1017	(( ival = $tasks_per_node ))
1018	(( pes = numprocs ))
1019	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1020	# then
1021	# (( pes = pes - 1 ))
1022	# fi
1023	(( ii = pes / ival ))
1024	if (( pes - ii * ival > 0 ))
1025	then
1026	printf "\n"
1027	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1028	printf "\n divisor of the total number of processors (option \"-X\")"
1029	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1030	locat=tasks_per_node; (( iec = 0 )); exit
1031	fi
1032	fi
1033
1034
1035	# IBMY HAT NUR EINEN KNOTEN
1036	if [[ $host = ibmy ]]
1037	then
1038	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1039	then
1040	printf "\n"
1041	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1042	printf "\n total number of processors (option \"-X\")"
1043	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1044	locat=tasks_per_node; (( iec = 0 )); exit
1045	fi
1046	fi
1047
1048
1049	# SETTINGS FOR SUBJOB-COMMAND
1050	TOPT="-T $tasks_per_node"
1051	OOPT="-O $threads_per_task"
1052
1053	# GESAMTZAHL DER KNOTEN BESTIMMEN
1054	if [[ "$tasks_per_node" != "" ]]
1055	then
1056	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1057	fi
1058
1059	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1060	# SETZEN
1061	if [[ $node_usage = default ]]
1062	then
1063	if [[ $host = ibms ]]
1064	then
1065	node_usage=shared
1066	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1067	then
1068	node_usage=singlejob
1069	else
1070	node_usage=not_shared
1071	fi
1072	fi
1073
1074	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
1075	then
1076	printf "\n"
1077	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1078	printf "\n \"shared\" or \"not_shared\""
1079	locat=tasks_per_node; (( iec = 0 )); exit
1080	fi
1081
1082	fi
1083
1084	# PRUEFEN, OB HOSTFILE EXISTIERT
1085	if [[ -n $hostfile ]]
1086	then
1087	if [[ ! -f $hostfile ]]
1088	then
1089	printf "\n"
1090	printf "\n +++ hostfile \"$hostfile\" does not exist"
1091	locat=hostfile; exit
1092	fi
1093	fi
1094
1095	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1096	if [[ $host = ibmy && $do_remote = false ]]
1097	then
1098	if [[ ! -f $HOME/.rhosts ]]
1099	then
1100	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1101	printf "\n\n *** file:"
1102	printf "\n $HOME/.rhosts"
1103	printf "\n was created\n"
1104	fi
1105	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1106	then
1107	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1108	printf "\n\n *** file:"
1109	printf "\n $HOME/.rhosts"
1110	printf "\n was extended by the name of the current host\n"
1111	fi
1112	fi
1113
1114
1115	# Set default value for the maximum number of parallel io streams
1116	if [[ "$maximum_parallel_io_streams" = "" ]]
1117	then
1118	maximum_parallel_io_streams=$numprocs
1119	fi
1120
1121
1122	# Set port number option for calls of ssh/scp, subjob and batch_scp scripts
1123	if [[ "$scp_port" != "" ]]
1124	then
1125	PORTOPT="-P $scp_port"
1126	SSH_PORTOPT="-p $scp_port"
1127	fi
1128
1129
1130	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1131	if [[ $queue = none ]]
1132	then
1133	case $host in
1134	(ibmh) queue=no_class;;
1135	(ibmkisti) queue=class.32plus;;
1136	(ibmy) queue=parallel;;
1137	(lckiaps) queue=normal;;
1138	(lckyoto) queue=ph;;
1139	(lckyuh) queue=fx-single;;
1140	(lckyut) queue=cx-single;;
1141	(lcsgib) queue=testq;;
1142	(lcsgih) queue=testq;;
1143	(lctit) queue=S;;
1144	(nech) queue=none;;
1145	(necriam) queue=SP;;
1146	(unics) queue=unics;;
1147	esac
1148	fi
1149
1150
1151	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1152	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1153	# ERMITTELN
1154	(( i = 0 ))
1155	while (( i < iin ))
1156	do
1157	(( i = i + 1 ))
1158	(( maxcycle = 0 ))
1159
1160	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1161	if [[ "${actionin[$i]}" = di ]]
1162	then
1163	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1164	# REM-MASCHINE AUSWERTEN
1165	eval filename=${pathin[$i]}/${endin[$i]}
1166	else
1167	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1168	# REM-MASCHINE AUSWERTEN
1169	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1170	fi
1171	eval pathname=${pathin[$i]}
1172
1173	# SAVE INPUT FILE NAME FOR PARAMETER FILE CHECK
1174	if [[ ("${transin[$i]}" = job) && (-f $filename) ]]
1175	then
1176	filename_input=$filename
1177	fi
1178
1179	# PRUEFEN AUF VORHANDENSEIN
1180	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1181	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1182	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1183	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1184	then
1185	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1186	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1187	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1188	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1189	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1190	if [[ "${transin[$i]}" != "locopt" ]]
1191	then
1192	printf "\n\n +++ INPUT-file: "
1193	if [[ "${extin[$i]}" = "" ]]
1194	then
1195	printf "\n $filename"
1196	else
1197	printf "\n $filename.${extin[$i]}"
1198	fi
1199	printf "\n does not exist\n"
1200	locat=input; exit
1201	else
1202	transin[$i]="unavailable"
1203	fi
1204	else
1205
1206	# ZYKLUSNUMMER FESTSTELLEN
1207	ls -1 -d $filename > filelist 2>/dev/null
1208	ls -1 -d $filename.* >> filelist 2>/dev/null
1209	while read zeile
1210	do
1211	cycle=$(echo $zeile \| cut -f2 -d".")
1212	if [[ "$cycle" = "$zeile" ]]
1213	then
1214	(( icycle = 0 ))
1215	elif [[ "$cycle" = "${extin[$i]}" ]]
1216	then
1217	(( icycle = 0 ))
1218	else
1219	(( icycle = $cycle ))
1220	fi
1221	if (( icycle > maxcycle ))
1222	then
1223	(( maxcycle = icycle ))
1224	file_to_be_used=$zeile
1225	fi
1226	done <filelist
1227	rm filelist
1228
1229	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1230	if (( maxcycle > 0 ))
1231	then
1232	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1233	then
1234	filename=${filename}.$maxcycle.${extin[$i]}
1235	else
1236	filename=${filename}.$maxcycle
1237	fi
1238	else
1239	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1240	then
1241	filename=${filename}.${extin[$i]}
1242	fi
1243	fi
1244
1245	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1246	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1247	absnamein[$i]=$filename
1248	if (( maxcycle > 0 ))
1249	then
1250	if [[ "${actionin[$i]}" = di ]]
1251	then
1252	frelin[$i]=${endin[$i]}.$maxcycle
1253	else
1254	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1255	fi
1256	else
1257	if [[ "${actionin[$i]}" = di ]]
1258	then
1259	frelin[$i]=${endin[$i]}
1260	else
1261	frelin[$i]=${afname}${endin[$i]}
1262	fi
1263	fi
1264
1265	fi
1266	done
1267
1268	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1269	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1270	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1271	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1272	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1273	(( i = 0 ))
1274	while (( i < iout ))
1275	do
1276	(( i = i + 1 ))
1277	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1278	then
1279	if [[ "${actionout[$i]}" = tr ]]
1280	then
1281	actionout[$i]=""
1282	elif [[ "${actionout[$i]}" = trpe ]]
1283	then
1284	actionout[$i]=pe
1285	elif [[ "${actionout[$i]}" = tra ]]
1286	then
1287	actionout[$i]=a
1288	fi
1289	(( maxcycle = 0 ))
1290	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1291	eval catalogname=${pathout[$i]}
1292	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1293	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1294	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1295	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1296	then
1297
1298	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1299	if cat /dev/null > $filename
1300	then
1301	rm $filename
1302	else
1303
1304	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1305	if [[ ! -d $catalogname ]]
1306	then
1307	if mkdir -p $catalogname
1308	then
1309	printf "\n\n *** directory:"
1310	printf "\n $catalogname"
1311	printf "\n was created\n"
1312	else
1313	printf "\n\n +++ OUTPUT-file:"
1314	printf "\n $filename"
1315	printf "\n cannot be created, because directory does not exist"
1316	printf "\n and cannot be created either"
1317	printf "\n"
1318	locat=output ; exit
1319	fi 2>/dev/null
1320	else
1321	printf "\n\n +++ OUTPUT-file:"
1322	printf "\n $filename"
1323	printf "\n cannot be created, although directory exists"
1324	printf "\n"
1325	locat=output ; exit
1326	fi
1327	fi 2>/dev/null
1328	else
1329
1330	# ZYKLUSNUMMER FESTSTELLEN
1331	ls -1 -d $filename > filelist 2>/dev/null
1332	ls -1 -d $filename.* >> filelist 2>/dev/null
1333	while read zeile
1334	do
1335	cycle=$(echo $zeile \| cut -f2 -d".")
1336	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1337	then
1338	(( icycle = 1 ))
1339	else
1340	(( icycle = $cycle + 1 ))
1341	fi
1342	if (( icycle > maxcycle ))
1343	then
1344	(( maxcycle = icycle ))
1345	fi
1346	done <filelist
1347	rm filelist
1348	fi
1349
1350	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1351	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1352	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1353	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1354	if [[ "${actionout[$i]}" != a ]]
1355	then
1356	if (( maxcycle > 0 ))
1357	then
1358	filename=${filename}.$maxcycle
1359	if cat /dev/null > $filename
1360	then
1361	rm $filename
1362	else
1363	printf "\n +++ OUTPUT-file:"
1364	printf "\n $filename"
1365	printf "\n cannot be created"
1366	locat=output ; exit
1367	fi
1368	fi
1369	else
1370	(( maxcycle = maxcycle - 1 ))
1371	if (( maxcycle > 0 ))
1372	then
1373	filename=${filename}.$maxcycle
1374	fi
1375	fi
1376
1377	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1378	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1379	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1380	pathout[$i]=$filename
1381	if (( maxcycle > 0 ))
1382	then
1383	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1384	else
1385	frelout[$i]=${fname}${endout[$i]}
1386	fi
1387
1388	fi
1389	done
1390
1391
1392	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1393	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1394	then
1395	if [[ "$dvr_inc" = "" ]]
1396	then
1397	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1398	printf "\n This is required for the dvrp_graphics package.\n"
1399	locat=dvr; exit
1400	fi
1401	if [[ "$dvr_lib" = "" ]]
1402	then
1403	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1404	printf "\n This is required for the dvrp_graphics package.\n"
1405	locat=dvr; exit
1406	fi
1407	fi
1408
1409
1410	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1411	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1412	# UEBERSETZT ZU WERDEN)
1413	if [[ "$mainprog" = "" && "$executable" = "" ]]
1414	then
1415	printf "\n +++ neither main program nor executable defined"
1416	locat=source; exit
1417	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1418	then
1419	printf "\n +++ main program as well as executable defined"
1420	locat=source; exit
1421	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1422	then
1423	do_compile=false
1424	fi
1425
1426
1427	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1428	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1429	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1430	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1431	then
1432	rm -rf SOURCES_FOR_RUN_$fname
1433	mkdir SOURCES_FOR_RUN_$fname
1434	fi
1435
1436
1437	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1438	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1439	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1440	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1441	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1442	then
1443
1444	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1445
1446	if [[ "$source_list" = LOCALLY_MODIFIED ]]
1447	then
1448
1449	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1450	source_list=""
1451	cd $source_path
1452
1453
1454	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1455	if [[ ! -d .svn ]]
1456	then
1457	printf "\n\n +++ source directory"
1458	printf "\n \"$source_path\" "
1459	printf "\n is not under control of \"subversion\"."
1460	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1461	fi
1462
1463
1464	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1465	Filenames=""
1466	svn status > tmp_mrun
1467	while read line
1468	do
1469	firstc=`echo $line \| cut -c1`
1470	if [[ $firstc = M \|\| $firstc = "?" ]]
1471	then
1472	Name=`echo "$line" \| cut -c8-`
1473	extension=`echo $Name \| cut -d. -f2`
1474	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1475	then
1476	Filenames="$Filenames "$Name
1477	fi
1478	fi
1479	done < tmp_mrun
1480
1481
1482	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1483	for dateiname in $Filenames
1484	do
1485	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1486	source_list=$source_list"$dateiname "
1487	done
1488
1489	cd - > /dev/null
1490
1491
1492	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1493	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1494	# VORHANDEN
1495	elif [[ "$source_list" != "" && $restart_run != true ]]
1496	then
1497
1498	cd $source_path
1499
1500	for filename in $source_list
1501	do
1502
1503	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1504	if [[ $(echo $filename \| grep -c "/") != 0 ]]
1505	then
1506	printf "\n +++ source code file: $filename"
1507	printf "\n must not contain (\"/\") "
1508	locat=source; exit
1509	fi
1510
1511	if [[ ! -f $filename ]]
1512	then
1513	printf "\n +++ source code file: $filename"
1514	printf "\n does not exist"
1515	locat=source; exit
1516	else
1517	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1518	fi
1519
1520	done
1521
1522	cd - > /dev/null
1523
1524	fi
1525
1526
1527	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1528	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1529	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1530	if [[ $restart_run != true ]]
1531	then
1532
1533	if [[ ! -f "$source_path/$mainprog" ]]
1534	then
1535	printf "\n\n +++ main program: $mainprog"
1536	printf "\n does not exist in source directory"
1537	printf "\n \"$source_path\"\n"
1538	locat=source; exit
1539	else
1540	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1541	then
1542	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1543	source_list=${mainprog}" $source_list"
1544	fi
1545	fi
1546	fi
1547
1548
1549	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1550	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1551	if [[ "$restart_run" != true ]]
1552	then
1553	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1554	if [[ ! -f $makefile ]]
1555	then
1556	printf "\n +++ file \"$makefile\" does not exist"
1557	locat=make; exit
1558	else
1559	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1560	fi
1561	fi
1562
1563
1564	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1565	if [[ $restart_run != true && "$add_source_path" != "" ]]
1566	then
1567
1568	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1569	if [[ ! -d $add_source_path ]]
1570	then
1571	printf "\n\n +++ WARNING: additional source code directory"
1572	printf "\n \"$add_source_path\" "
1573	printf "\n does not exist or is not a directory."
1574	printf "\n No source code will be used from this directory!\n"
1575	add_source_path=""
1576	if [[ $silent == false ]]
1577	then
1578	sleep 3
1579	fi
1580	else
1581
1582	cd $add_source_path
1583	found=false
1584
1585	Names=$(ls -1 *.f90 2>&1)
1586	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1587	Names=$(ls -1 *.F90 2>&1)
1588	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1589	Names=$(ls -1 *.F 2>&1)
1590	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1591	Names=$(ls -1 *.f 2>&1)
1592	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1593	Names=$(ls -1 *.c 2>&1)
1594	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1595
1596	cd - > /dev/null
1597	cd SOURCES_FOR_RUN_$fname
1598
1599	# COPY MAKEFILE IF EXISTING
1600	if [[ -f $add_source_path/Makefile ]]
1601	then
1602	printf "\n\n *** user Makefile from directory"
1603	printf "\n \"$add_source_path\" is used \n"
1604	if [[ $silent == false ]]
1605	then
1606	sleep 1
1607	fi
1608	cp $add_source_path/Makefile .
1609	fi
1610
1611	for dateiname in $AddFilenames
1612	do
1613	if [[ -f $dateiname ]]
1614	then
1615	printf "\n +++ source code file \"$dateiname\" found in additional"
1616	printf "\n source code directory \"$add_source_path\" "
1617	printf "\n but was also given with option \"-s\" which means that it should be taken"
1618	printf "\n from directory \"$source_path\"."
1619	locat=source; exit
1620	fi
1621
1622	cp $add_source_path/$dateiname .
1623	source_list="$source_list $dateiname"
1624
1625	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1626	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1627	then
1628	printf "\n\n +++ user file \"$dateiname\" "
1629	printf "\n is not listed in Makefile \n"
1630	locat=source; exit
1631	else
1632
1633	# Default User-Interface von der Liste entfernen, falls Datei
1634	# ein User-Interface enthaelt
1635	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1636	# then
1637	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1638	# then
1639	# rm -rf user_interface.f90
1640	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1641	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1642	# printf "\n since a user-interface is found in file"
1643	# printf "\n \"$add_source_path/$dateiname\" \n"
1644	# sleep 3
1645	# else
1646	if [[ $found = false ]]
1647	then
1648	found=true
1649	printf "\n\n *** following user file(s) added to the"
1650	printf " files to be translated:\n "
1651	fi
1652	printf "$dateiname "
1653	if [[ $silent == false ]]
1654	then
1655	sleep 0.5
1656	fi
1657
1658	fi
1659	done
1660	[[ $found = true ]] && printf "\n"
1661	cd - > /dev/null
1662	fi
1663	fi
1664
1665
1666	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1667	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1668	if [[ $restart_run != true && -n $package_list ]]
1669	then
1670
1671	cd $source_path
1672
1673	for package in $package_list
1674	do
1675
1676	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1677
1678	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1679	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1680	# LIEFERT
1681	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1682
1683
1684	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1685	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1686	for source_list_name in $package_source_list
1687	do
1688	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1689	then
1690
1691	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1692	ending=`echo $source_list_name \| cut -f2 -d.`
1693	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1694	then
1695	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1696	source_list="$source_list $source_list_name"
1697	fi
1698	fi
1699	done
1700	done
1701
1702	cd - > /dev/null
1703	fi
1704
1705
1706	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1707	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1708	# if [[ "$restart_run" != true ]]
1709	# then
1710	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1711	# if [[ ! -f $makefile ]]
1712	# then
1713	# printf "\n +++ file \"$makefile\" does not exist"
1714	# locat=make; exit
1715	# else
1716	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1717	# fi
1718	# fi
1719
1720	fi # do_compile=true
1721
1722
1723	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1724	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1725	if [[ $do_compile = true ]]
1726	then
1727
1728	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1729	# ZUSAMMENSETZEN
1730	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1731	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1732	then
1733	cpp_options="${cpp_options},-D__ibm=__ibm"
1734	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1735	then
1736	cpp_options="$cpp_options -D__nec"
1737	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1738	then
1739	cpp_options="$cpp_options -D__lc"
1740	else
1741	cpp_options="$cpp_options -D__$localhost"
1742	fi
1743
1744	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1745	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1746	then
1747	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1748	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1749	else
1750	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1751	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1752	fi
1753
1754	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1755	if [[ -n $package_list ]]
1756	then
1757	for package in $package_list
1758	do
1759	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1760	then
1761	if [[ $package != "dvrp_graphics+1PE" ]]
1762	then
1763	cpp_options="${cpp_options},-D__$package=__$package"
1764	else
1765	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1766	export use_seperate_pe_for_dvrp_output=true
1767	fi
1768	else
1769	if [[ $package != "dvrp_graphics+1PE" ]]
1770	then
1771	cpp_options="$cpp_options -D__$package"
1772	else
1773	cpp_options="$cpp_options -D__dvrp_graphics"
1774	export use_seperate_pe_for_dvrp_output=true
1775	fi
1776	fi
1777	done
1778	fi
1779
1780	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1781	if [[ -n $cpp_opts ]]
1782	then
1783	for popts in $cpp_opts
1784	do
1785	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1786	then
1787	cpp_options="${cpp_options},-D__$popts=__$popts"
1788	else
1789	cpp_options="$cpp_options -D__$popts"
1790	fi
1791	done
1792	fi
1793
1794	else
1795
1796
1797	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1798	if [[ $do_remote = false ]]
1799	then
1800	if [[ ! -f $executable ]]
1801	then
1802	printf "\n +++ executable file: $executable"
1803	printf "\n does not exist"
1804	locat=executable; exit
1805	fi
1806	fi
1807	fi
1808
1809
1810	# JOBMODUS FESTSTELLEN
1811	if [[ "$ENVIRONMENT" = BATCH ]]
1812	then
1813	jobmo=BATCH
1814	else
1815	jobmo=INTERACTIVE
1816	fi
1817
1818
1819	# no interactive runs on lctit
1820	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
1821	then
1822	printf "\n +++ no interactive runs allowed on host \"$host\" "
1823	printf "\n please submit batch job using mrun option \"-b\" \n"
1824	locat=normal; exit
1825	fi
1826
1827
1828	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1829	# DURCH BENUTZER ANDERWEITIG VEREINBART
1830	if [[ "$compiler_name" = "" ]]
1831	then
1832
1833	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
1834	locat=compiler_name; exit
1835
1836	fi
1837
1838
1839	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
1840	[[ $localhost = necriam ]] && compiler_name=mpif90
1841
1842
1843
1844	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
1845	kennung=$RANDOM
1846	if [[ "$tmp_user_catalog" = "" ]]
1847	then
1848	if [[ $localhost = ibmh ]]
1849	then
1850	tmp_user_catalog=$SCRATCH
1851	elif [[ $localhost = nech ]]
1852	then
1853	tmp_user_catalog=$WRKSHR
1854	else
1855	tmp_user_catalog=/tmp
1856	fi
1857	fi
1858	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
1859
1860
1861	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
1862	# BESTIMMEN
1863	if [[ "$tmp_data_catalog" = "" ]]
1864	then
1865	if [[ $localhost = nech ]]
1866	then
1867	tmp_data_catalog=$WRKSHR/mrun_restart_data
1868	else
1869	tmp_data_catalog=/tmp/mrun_restart_data
1870	fi
1871	fi
1872
1873
1874	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
1875	# ERSETZEN
1876	if [[ $do_remote = false && $do_compile = true ]]
1877	then
1878	eval fopts=\"$fopts\"
1879	eval lopts=\"$lopts\"
1880	fi
1881
1882
1883
1884	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
1885	fopts="$fopts $netcdf_inc $dvr_inc"
1886	lopts="$lopts $netcdf_lib $dvr_lib"
1887	ROPTS="$ropts"
1888	# if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcflow \|\| $host = lcxe6 \|\| $host = lcxt5m \|\| $host = lck \|\| $host = lckiaps \|\| $host = lckordi \|\| $host = lcsb \|\| $host ) && -n $numprocs ]]
1889	# then
1890	XOPT="-X $numprocs"
1891	# fi
1892
1893
1894
1895	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
1896	# GRAMM BENOETIGT
1897	done=false
1898	while [[ $done = false ]]
1899	do
1900	cputime=$cpumax
1901	if (( $cputime == 0 ))
1902	then
1903	if [[ $do_batch = true ]]
1904	then
1905	printf "\n +++ cpu-time is undefined"
1906	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
1907	printf "\n >>> "
1908	read cputime 1>/dev/null 2>&1
1909	else
1910	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
1911	fi
1912	else
1913	done=true
1914	fi
1915	cpumax=$cputime
1916	done
1917
1918	(( minuten = cputime / 60 ))
1919	(( sekunden = cputime - minuten * 60 ))
1920
1921
1922	# PRUEFEN DER KERNSPEICHERANFORDERUNG
1923	if [[ $do_batch = true ]]
1924	then
1925	done=false
1926	while [[ $done = false ]]
1927	do
1928	if (( memory == 0 ))
1929	then
1930	printf "\n +++ memory demand is undefined"
1931	printf "\n >>> Please type memory in MByte per process as INTEGER:"
1932	printf "\n >>> "
1933	read memory 1>/dev/null 2>&1
1934	else
1935	done=true
1936	fi
1937	done
1938	fi
1939
1940
1941	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
1942	if [[ $do_remote = true && -z $remote_username ]]
1943	then
1944	while [[ -z $remote_username ]]
1945	do
1946	printf "\n +++ username on remote host \"$host\" is undefined"
1947	printf "\n >>> Please type username:"
1948	printf "\n >>> "
1949	read remote_username
1950	done
1951	mc="$mc -u$remote_username"
1952	fi
1953
1954	# CHECK FOR INITIAL COMMANDS AFTER LOGIN
1955	if [[ "$login_init_cmd" != "" ]]
1956	then
1957	export init_cmds="${login_init_cmd};"
1958	fi
1959
1960
1961	# set module load command and export for subjob
1962	if [[ "$modules" != "" ]]
1963	then
1964	if [[ $host = lctit ]]
1965	then
1966	export module_calls=". $modules"
1967	else
1968	export module_calls="module load ${modules};"
1969	fi
1970	fi
1971
1972	# bugfix for wrong netcdf module and for netCDF4 usage in case of mpt
1973	if [[ $host = lcsgib \|\| $host = lcsgih ]]
1974	then
1975	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
1976	then
1977	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
1978	fi
1979	# if [[ $(echo $module_calls \| grep -c mpt) != 0 ]]
1980	# then
1981	# export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/sgi/mpt/2011-02-07/lib:\$LD_LIBRARY_PATH;"
1982	# echo "*** module_calls = $module_calls"
1983	# fi
1984	fi
1985
1986
1987	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
1988	if [[ $host = lcsgib \|\| $host = lcsgih ]]
1989	then
1990	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
1991	then
1992	mpilib=mpt
1993	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
1994	then
1995	mpilib=mvapich
1996	elif [[ $(echo $modules \| grep -c impi ) != 0 ]]
1997	then
1998	mpilib=impi
1999	fi
2000	fi
2001
2002
2003
2004	###########################################################################
2005	# HEADER-AUSGABE
2006	###########################################################################
2007
2008
2009	calltime=$(date)
2010	printf "\n"
2011	# [[ $silent = false ]] && clear
2012	printf "#------------------------------------------------------------------------# \n"
2013	printf "\| %-35s%35s \| \n" "$version" "$calltime"
2014	printf "\| \| \n"
2015	spalte1="called on:"; spalte2=$localhost_realname
2016	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2017	if [[ $local_compile = false ]]
2018	then
2019	if [[ $do_remote = true ]]
2020	then
2021	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2022	else
2023	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2024	fi
2025	else
2026	spalte1="compiling test only!"; spalte2=""
2027	fi
2028	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2029	if [[ -n $numprocs ]]
2030	then
2031	spalte1="number of PEs:"; spalte2=$numprocs
2032	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2033	fi
2034	if [[ -n $tasks_per_node ]]
2035	then
2036	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2037	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2038	fi
2039	if [[ $maximum_parallel_io_streams != $numprocs ]]
2040	then
2041	spalte1="max par io streams:"; spalte2="$maximum_parallel_io_streams"
2042	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2043	fi
2044	if [[ $use_openmp = true ]]
2045	then
2046	spalte1="threads per task:"; spalte2="$threads_per_task"
2047	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2048	fi
2049	printf "\| \| \n"
2050	if [[ $do_compile = true ]]
2051	then
2052	if [[ "$mopts" != "" ]]
2053	then
2054	spalte1="make options:"; spalte2=$(echo "$mopts" \| cut -c-45)
2055	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2056	zeile=$(echo "$mopts" \| cut -c46-)
2057	while [[ "$zeile" != "" ]]
2058	do
2059	spalte1=""
2060	spalte2=$(echo "$zeile" \| cut -c-45)
2061	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2062	zeile=$(echo "$zeile" \| cut -c46-)
2063	done
2064	fi
2065
2066	spalte1="cpp directives:"; spalte2=$(echo "$cpp_options" \| cut -c-45)
2067	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2068	zeile=$(echo "$cpp_options" \| cut -c46-)
2069	while [[ "$zeile" != "" ]]
2070	do
2071	spalte1=""
2072	spalte2=$(echo "$zeile" \| cut -c-45)
2073	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2074	zeile=$(echo "$zeile" \| cut -c46-)
2075	done
2076
2077	spalte1="compiler options:"; spalte2=$(echo "$fopts" \| cut -c-45)
2078	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2079	zeile=$(echo "$fopts" \| cut -c46-)
2080	while [[ "$zeile" != "" ]]
2081	do
2082	spalte1=""
2083	spalte2=$(echo "$zeile" \| cut -c-45)
2084	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2085	zeile=$(echo "$zeile" \| cut -c46-)
2086	done
2087
2088	spalte1="linker options:"; spalte2=$(echo "$lopts" \| cut -c-45)
2089	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2090	zeile=$(echo "$lopts" \| cut -c46-)
2091	while [[ "$zeile" != "" ]]
2092	do
2093	spalte1=""
2094	spalte2=$(echo "$zeile" \| cut -c-45)
2095	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2096	zeile=$(echo "$zeile" \| cut -c46-)
2097	done
2098
2099	spalte1="modules to be load:"; spalte2=$(echo "$modules" \| cut -c-45)
2100	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2101	zeile=$(echo "$modules" \| cut -c46-)
2102	while [[ "$zeile" != "" ]]
2103	do
2104	spalte1=""
2105	spalte2=$(echo "$zeile" \| cut -c-45)
2106	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2107	zeile=$(echo "$zeile" \| cut -c46-)
2108	done
2109
2110	spalte1="main program:"; spalte2=$mainprog
2111	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2112	else
2113	spalte1=executable:; spalte2=$executable
2114	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2115	fi
2116	printf "\| \| \n"
2117	spalte1="base name of files:"; spalte2=$fname
2118	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2119	if [[ $fname != $afname ]]
2120	then
2121	spalte1="base name of input files:"; spalte2=$afname
2122	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2123	fi
2124	spalte1="INPUT control list:"; spalte2=$(echo $input_list)
2125	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2126	spalte1="OUTPUT control list:"; spalte2=$(echo $output_list)
2127	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2128
2129	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2130	then
2131	spalte1="memory demand / PE":; spalte2="$memory MB"
2132	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2133	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2134	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2135	fi
2136
2137	if [[ $do_compile = true ]]
2138	then
2139	printf "\| \| \n"
2140	printf "\| Files to be compiled: \| \n"
2141	zeile=$source_list
2142	while [[ "$zeile" != "" ]]
2143	do
2144	linestart=$(echo $zeile \| cut -c-70)
2145	printf "\| %-70s \| \n" "$linestart"
2146	zeile=$(echo "$zeile" \| cut -c71-)
2147	done
2148	fi
2149	printf "#------------------------------------------------------------------------#"
2150
2151
2152
2153	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2154	if [[ $do_trace = true ]]
2155	then
2156	(( i = 0 ))
2157	while (( i < iin ))
2158	do
2159	(( i = i + 1 ))
2160	if (( i == 1 ))
2161	then
2162	printf "\n\n >>> INPUT-file assignments:\n"
2163	fi
2164	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2165	done
2166	(( i = 0 ))
2167	while (( i < iout ))
2168	do
2169	(( i = i + 1 ))
2170	if (( i == 1 ))
2171	then
2172	printf "\n\n >>> OUTPUT-file assignments:\n"
2173	fi
2174	printf "\n ${localout[$i]} : ${pathout[$i]}"
2175	done
2176	(( i = 0 ))
2177	while (( i < iic ))
2178	do
2179	(( i = i + 1 ))
2180	if (( i == 1 ))
2181	then
2182	printf "\n\n >>> INPUT-commands:\n"
2183	fi
2184	printf "\n ${in_command[$i]}"
2185	done
2186	(( i = 0 ))
2187	while (( i < ioc ))
2188	do
2189	(( i = i + 1 ))
2190	if (( i == 1 ))
2191	then
2192	printf "\n\n >>> OUTPUT-commands:\n"
2193	fi
2194	printf "\n ${out_command[$i]}"
2195	done
2196	fi
2197
2198
2199	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2200	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2201	then
2202	antwort=dummy
2203	printf "\n\n"
2204	printf " >>> everything o.k. (y/n) ? "
2205	while read antwort
2206	do
2207	if [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2208	then
2209	printf " >>> everything o.k. (y/n) ? "
2210	else
2211	break
2212	fi
2213	done
2214	if [[ $antwort = n \|\| $antwort = N ]]
2215	then
2216	locat=user_abort; (( iec = 0 )); exit
2217	fi
2218	if [[ $do_batch = true ]]
2219	then
2220	printf " >>> batch-job will be created and submitted"
2221	else
2222	if [[ $local_compile = false ]]
2223	then
2224	printf " >>> MRUN will now continue to execute on this machine"
2225	else
2226	printf " >>> a test compilation will now be carried out on this machine"
2227	fi
2228	fi
2229	fi
2230
2231
2232	# PERFORM PARAMETER FILE CHECK (COUPLED RUNS ARE NOT SUPPORTED YET)
2233	# DEFINE VARIABLES FOR FREQUENTLY USED DIRECTORIES
2234	check_depository="${working_directory}/trunk/UTIL"
2235	check_sources="${working_directory}/tmp_check_namelist_files"
2236	skip_check=false
2237
2238	# CHECK IF NAMELIST_FILE_CHECK HAS BEEN COMPILED SUCCESSFULLY
2239	if [[ ! -f $check_depository/check_namelist_files.tar ]]
2240	then
2241	skip_check=true
2242	reason="run on remote host or parameter file check has not been compiled."
2243	fi
2244	if [[ ! -f $PALM_BIN/check_namelist_files.x ]]
2245	then
2246	skip_check=true
2247	reason="parameter file check has not been compiled."
2248	fi
2249
2250	# CHECK FOR PARALLEL RUN; OTHERWISE SKIP CHECK
2251	if [[ "$cond1" != "parallel" && "$cond2" != "parallel" ]]
2252	then
2253	skip_check=true
2254	reason="serial run."
2255	fi
2256
2257	# ONLY PERFORM CHECK IF -z OPTION IS NOT SET, NO RESTART RUN IS CARRIED OUT
2258	# AND IF THE EXECUTION HOST IS THE LOCAL HOST
2259	# ATTENTION: THIS ROUTINE DOES NOT WORK IF THE COMPILER ON THE LOCAL HOST
2260	# DIFFERS FROM THE COMPILER ON THE REMOTE HOST
2261	if [[ $check_namelist_files == false ]]
2262	then
2263	skip_check=true
2264	reason="-z option set."
2265	fi
2266
2267	if [[ $fromhost != $localhost ]]
2268	then
2269	skip_check=true
2270	reason="submitting host is local host."
2271	fi
2272
2273	if [[ $run_coupled_model == true ]]
2274	then
2275	skip_check=true
2276	reason="coupled run."
2277	fi
2278
2279	if [[ $restart_run == true ]]
2280	then
2281	skip_check=true
2282	reason="restart run."
2283	fi
2284
2285	# SKIP CHECK IN CASE OF RESTART RUN: CHECK WHETHER THE LAST CHAR IS "f" IN PARIN
2286	(( last_char = `echo $filename_input \| wc -c` - 1 ))
2287	last_char=`echo $filename_input \| cut -c $last_char`
2288	if [[ "$last_char" == "f" ]]
2289	then
2290	skip_check=true
2291	reason="restart run."
2292	fi
2293
2294	if [[ $skip_check == false ]]
2295	then
2296	tmp_check=${working_directory}/tmp_check
2297
2298	# GET TOPOGRAPHY PARAMETER FILE SUFFIX (USUALLY "_P3DF"). THIS FILE MIGHT IS
2299	# NOT NECESSARILY REQUIRED
2300	line=""
2301	found=false
2302	grep "TOPOGRAPHY_DATA" $config_file > $tmp_check
2303	while read line1
2304	do
2305	line="$line1"
2306	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2307	then
2308	topo_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2309	found=true
2310	fi
2311	done < $tmp_check
2312
2313	if [[ $found = false ]]
2314	then
2315	printf "\n +++ no TOPOGRAPHY list entry found in the configuration file."
2316	fi
2317
2318	rm -rf ${working_directory}/tmp_check
2319
2320	# CHECK IF THE A P3DF FILE MUST BE CHECKED
2321	for item in $input_list
2322	do
2323	if [[ "$item" == "restart" ]]
2324	then
2325	check_restart=1
2326	else
2327	check_restart=0
2328	fi
2329	done
2330
2331	# ERROR IF NO PARAMETER FILE WAS FOUND, OTHERWISE PROCEED
2332	if [[ (! -f $filename_input) && ( "$filename_input" != "" ) ]]
2333	then
2334	printf "\n\n +++ ERROR: parameter file ($filename_input) not found."
2335	locat=check_namelist; exit
2336	fi
2337
2338	# CHECK IF THE RESTART PARAMETER FILE EXISTS (IF NECESSARY)
2339	if [[ $check_restart == 1 ]]
2340	then
2341
2342	filenamef="${filename_input}f"
2343	if [[ ! -f $filenamef ]]
2344	then
2345	printf "\n\n +++ WARNING: restart parameter file ($filenamef) is missing."
2346	check_restart=0
2347	answer=dummy
2348	printf "\n\n"
2349
2350	if [[ $silent == false ]]
2351	then
2352	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2353	do
2354	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2355	read answer
2356	done
2357	if [[ $answer = a \|\| $answer = A ]]
2358	then
2359	printf "\n +++ Aborting...."
2360	locat=normal; exit
2361	fi
2362	fi
2363	else
2364	check_restart=1
2365	fi
2366	fi
2367
2368	# CREATE TEMPORARY SOURCES_FOR_CHECK PATH
2369	mkdir $check_sources
2370	cd $check_sources
2371
2372
2373	# CHECK FOR USER CODE, OTHERWISE USE THE PRECOMPILED CHECK_NAMELIST_FILES.X
2374	if [[ -d $add_source_path ]]
2375	then
2376	printf "\n\n *** copying files from $check_depository"
2377	cp $check_depository/check_namelist_files.tar ./
2378
2379	printf "\n\n *** untar of makefile and source files in $check_sources"
2380	tar -xf check_namelist_files.tar > /dev/null 2>&1
2381
2382	printf "\n\n *** adding user code."
2383	cp $add_source_path/* ./
2384	touch check_namelist_files.f90
2385
2386	# GET COMPILER OPTIONS AND PERFORM MAKE
2387	printf "\n\n *** compiling code if necessary...\n"
2388
2389	# workaround for batch jobs on local machine (lcxe6)
2390	if [[ $do_batch == true && $do_remote == false ]]
2391	then
2392	eval $init_cmds
2393	fi
2394
2395	# GET CHECK OPTIONS
2396	line=""
2397	found=false
2398
2399	grep "$localhost" ${base_directory}/${config_file} \| grep "%cpp_options" > $tmp_check
2400
2401	while read line1
2402	do
2403
2404	if [[ $(echo $line1 \| cut -d" " -s -f3-) = "$localhost" ]]
2405	then
2406	line="$line1"
2407	fi
2408
2409	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2410	then
2411	# EVENTUELLE DOPPELPUNKTE AUS OPTIONSSTRING UND ALLE -D ENTFERNEN
2412	line="$line "
2413	copts_check=`echo $line \| cut -d" " -s -f2 \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g' \| sed 's/-D[^ ]* //g' \| sed 's/ -D.*//g'`
2414	found=true
2415	fi
2416
2417	done < $tmp_check
2418	copts_check="$copts_check -D__check -D__parallel"
2419
2420	make -f Makefile_check F90=$compiler_name_ser COPT="$copts_check"
2421
2422	# GET MAKE OUTPUT
2423	if [[ $? != 0 ]]
2424	then
2425	printf "\n +++ error during make."
2426	answer=dummy
2427	printf "\n\n"
2428	if [[ $silent == false ]]
2429	then
2430	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2431	do
2432	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2433	read answer
2434	done
2435	if [[ $answer = a \|\| $answer = A ]]
2436	then
2437	printf "\n +++ Aborting..."
2438	rm -rf $check_sources
2439	locat=normal; exit
2440	else
2441	skip_check=true
2442	fi
2443	else
2444	skip_check=true
2445	fi
2446	fi
2447	else
2448	cp $PALM_BIN/check_namelist_files.x ./
2449	fi
2450
2451	cp $filename_input ./PARIN
2452	if [[ $check_restart == 1 ]]
2453	then
2454	cp $filenamef ./PARINF
2455	fi
2456
2457	if [[ -f ${pathname}/${fname}${topo_suffix} && $skip_check == false ]]
2458	then
2459	printf "\n *** adding topography data"
2460	cp ${pathname}/${fname}${topo_suffix} ./TOPOGRAPHY_DATA
2461
2462	# IN CASE OF TOPOGRAPHY AND HIGH GRID POINT NUMBERS, THE STACK SIZE
2463	# MUST BE INCREASED. THIS IS DUE TO THE ARRAY nzb_local AND topo_height,
2464	# WHICH REQUIRE SUFFICIENT MEMORY
2465	ulimit -s unlimited
2466	fi
2467
2468	# CREATE ENVPAR FILE, WHICH IS NEEDED BY CHECK_NAMELIST_FILES.X
2469	cat > ENVPAR << %%END%%
2470	&envpar run_identifier = '$fname', host = '$host',
2471	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2472	maximum_parallel_io_streams = $maximum_parallel_io_streams,
2473	maximum_cpu_time_allowed = ${cpumax}.,
2474	revision = '$global_revision',
2475	local_dvrserver_running = $local_dvrserver_running /
2476
2477	%%END%%
2478
2479	# SAFETY CHECK: ONLY PROCEED IF THE PARAMETER CHECK PROGRAM WAS PROPERLY COMPILED
2480	if [[ ! -f check_namelist_files.x && $skip_check == false ]]
2481	then
2482	printf "\n +++ WARNING: check_namelist_files.x not found."
2483	answer=dummy
2484	printf "\n\n"
2485
2486	if [[ $silent == false ]]
2487	then
2488	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2489	do
2490	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2491	read answer
2492	done
2493	if [[ $answer = a \|\| $answer = A ]]
2494	then
2495	printf "\n +++ Aborting..."
2496	rm -rf $check_sources
2497	locat=normal; exit
2498	else
2499	printf "\n *** skipping parameter file check."
2500	fi
2501	fi
2502
2503	elif [[ $skip_check == false ]]
2504	then
2505	# STARTING THE PARAMETER FILE CHECK
2506	printf "\n\n *** starting parameter file check..."
2507
2508	# CHECKING THE P3D FILE
2509	printf "\n\n (1) checking $filename_input"
2510	echo "$numprocs 0 0" > VARIN
2511	errors=`./check_namelist_files.x < VARIN 2>&1`
2512
2513	check_error=false
2514	if [[ "$errors" == "" ]]
2515	then
2516	printf " --> o.k."
2517	else
2518	printf " --> failed."
2519	check_error=true
2520	printf "\n\n $errors"
2521	fi
2522
2523	# CHECKING THE PD3F FILE IF NECESSARY
2524	if [[ $check_restart == 1 && $check_error == false ]]
2525	then
2526	printf "\n\n (2) checking $filenamef"
2527
2528	# FIRST CHECK IF INITIALIZING_ACTIONS="READ_RESTART_DATA" IS SET
2529	# IN &INIPAR LIST
2530	found=false
2531	cat PARINF \| while read line
2532	do
2533	line=$(echo $line\|sed 's/ //g')
2534	if [[ $line == "&inipar" ]]
2535	then
2536	start_search=true
2537	fi
2538
2539	if [[ $start_search == true ]]
2540	then
2541	if [[ $line == "initializing_actions='read_restart_data'" ]]
2542	then
2543	found=true
2544	break
2545	fi
2546	fi
2547
2548	if [[ $line == "/" ]]
2549	then
2550	start_search=false
2551	fi
2552
2553	done
2554
2555	if [[ $found = false ]]
2556	then
2557	printf "\n\n +++ ERROR: initializing_actions = 'read_restart_data' not found"
2558	printf "\n in &inipar list in $fname$p3df_suffix."
2559	rm -rf $check_sources
2560	locat=check_namelist; exit
2561	fi
2562
2563	# READ max_user_pr FROM FILES
2564	if [[ -f parin_for_check ]]
2565	then
2566	read max_pr_user < parin_for_check
2567	else
2568	max_user_pr=0
2569	fi
2570
2571	echo "$numprocs 1 $max_pr_user" > VARIN
2572	errors=`./check_namelist_files.x < VARIN 2>&1`
2573
2574	if [[ "$errors" == "" ]]
2575	then
2576	printf " --> o.k."
2577	else
2578	printf " --> failed."
2579	check_error=true
2580	printf "\n\n $errors"
2581	fi
2582	fi
2583
2584	# REPORT ERRORS AND CONTINUE/EXIT
2585	if [[ $check_error == true ]]
2586	then
2587	printf "\n +++ errors found in the parameter file!\n"
2588	answer=dummy
2589	printf "\n\n"
2590
2591	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2592	do
2593	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2594	read answer
2595	done
2596
2597	if [[ $answer = a \|\| $answer = A ]]
2598	then
2599	printf "\n +++ Aborting..."
2600	rm -rf $check_sources
2601	locat=normal; exit
2602	fi
2603	else
2604	printf "\n\n *** parameter file(s) seem(s) to be o.k.\n"
2605	fi
2606	rm -rf $check_sources
2607	fi
2608	else
2609	printf "\n\n +++ skipping parameter file check due to following reason: $reason \n"
2610	fi
2611
2612	# DELETE TEMPORARY DIRECTORY AND FINISH NAMELIST FILE CHECK
2613	rm -rf $check_sources
2614	cd $working_directory
2615
2616
2617	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2618	# CHENDE AKTIONEN DURCHGEFUEHRT
2619	if [[ $do_batch = false ]]
2620	then
2621
2622
2623	# TEMPORAEREN KATALOG ERZEUGEN
2624	mkdir -p $TEMPDIR
2625	chmod go+rx $TEMPDIR
2626	tmpcreate=true
2627
2628	# set striping on lustre file system
2629	# if [[ $localhost = lcsgih ]]
2630	# then
2631	# lfs setstripe -s 8192k -c 16 $TEMPDIR
2632	# lfs getstripe $TEMPDIR
2633	# fi
2634
2635
2636	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2637	# TEMPORAERES VERZEICHNIS KOPIEREN
2638	if [[ $do_compile = true ]]
2639	then
2640
2641	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2642	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2643	if [[ $localhost = nech ]]
2644	then
2645	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2646	if mkdir -p $TEMPDIR_COMPILE
2647	then
2648	printf "\n *** \"$TEMPDIR_COMPILE\" "
2649	printf "\n is generated as temporary directory for cross compiling\n"
2650	else
2651	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2652	printf "\n needed for cross compilation failed"
2653	locat=compile
2654	exit
2655	fi
2656	else
2657	TEMPDIR_COMPILE=$TEMPDIR
2658	fi
2659
2660
2661	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2662	line=""
2663	grep "%depository_path" $config_file > tmp_mrun
2664	while read line
2665	do
2666	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2667	then
2668	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2669	then
2670	global_depository_path=`echo $line \| cut -d" " -s -f2`
2671	fi
2672	fi
2673	done < tmp_mrun
2674
2675	line=""
2676	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2677	while read line
2678	do
2679	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2680	then
2681	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2682	then
2683	local_depository_path=`echo $line \| cut -d" " -s -f2`
2684	fi
2685	fi
2686	done < tmp_mrun
2687
2688	if [[ "$local_depository_path" = "" ]]
2689	then
2690	if [[ "$global_depository_path" != "" ]]
2691	then
2692	local_depository_path=$global_depository_path
2693	else
2694	printf "\n\n +++ no depository path found in configuration file"
2695	printf "\n for local host \"$localhost\" "
2696	printf "\n please set \"\%depository_path\" in configuration file\n"
2697	locat=config_file; exit
2698	fi
2699	fi
2700	eval local_depository_path=$local_depository_path
2701	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2702	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2703
2704
2705	basename=`echo $mainprog \| cut -f1 -d"."`
2706	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2707	if [[ ! -f $make_depository ]]
2708	then
2709	printf "\n"
2710	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2711	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2712	else
2713	cp $make_depository $TEMPDIR_COMPILE
2714	cd $TEMPDIR_COMPILE
2715	tar -xf $make_depository > /dev/null 2>&1
2716	cd - > /dev/null
2717	fi
2718
2719	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2720
2721	else
2722
2723	cp $executable ${TEMPDIR}/a.out
2724
2725	fi
2726
2727
2728	# WECHSEL IN TEMPORAEREN KATALOG
2729	cd $TEMPDIR
2730	printf "\n *** changed to temporary directory: $TEMPDIR"
2731
2732
2733	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2734	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2735	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2736	# ERMITTELN
2737	(( i = 0 ))
2738	while (( i < iout ))
2739	do
2740	(( i = i + 1 ))
2741	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2742	then
2743	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2744	else
2745	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2746	fi
2747	done
2748
2749
2750	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2751	if [[ $do_compile = true ]]
2752	then
2753
2754
2755	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2756	printf "\n\n\n *** compilation starts \n$striche\n"
2757	printf " *** compilation with make using following options:\n"
2758	printf " make depository: $make_depository"
2759	if [[ "$mopts" != "" ]]
2760	then
2761	printf " make options: $mopts\n"
2762	fi
2763	printf " compilername: $compiler_name\n"
2764	printf " compiler options: $fopts\n"
2765	printf " preprocessor directives: $cpp_options \n"
2766	printf " linker options: $lopts \n"
2767	if [[ "$modules" != "" ]]
2768	then
2769	printf " modules to be load: $modules \n"
2770	fi
2771	printf " source code files: $source_list \n"
2772
2773	if [[ $localhost = nech ]]
2774	then
2775	# init_cmds was ". /SX/opt/etc/initsx.sh;"
2776	ssh $SSH_PORTOPT 136.172.44.192 -l $usern "$init_cmds $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2777	cp $TEMPDIR_COMPILE/a.out .
2778	[[ $? != 0 ]] && compile_error=true
2779	rm -rf $TEMPDIR_COMPILE
2780	elif [[ $localhost = ibmh ]]
2781	then
2782	printf " compiler is called via ssh on \"plogin1\" \n"
2783	ssh $SSH_PORTOPT plogin1 -l $usern "$init_cmds export PATH=/sw/ibm/xlf/13.1.0.8/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2784	[[ ! -f a.out ]] && compile_error=true
2785	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2786	elif [[ $localhost = lcsgib ]]
2787	then
2788	printf " compiler is called via ssh on \"bicegate0\" \n"
2789	ssh $SSH_PORTOPT bicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2790	[[ ! -f a.out ]] && compile_error=true
2791	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2792	elif [[ $localhost = lcsgih ]]
2793	then
2794	printf " compiler is called via ssh on \"hicegate0\" \n"
2795	ssh $SSH_PORTOPT hicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2796	[[ ! -f a.out ]] && compile_error=true
2797	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2798	elif [[ $localhost = lcflow ]]
2799	then
2800	printf " compiler is called via ssh on \"flow\" \n"
2801	ssh $SSH_PORTOPT flow02.hpc.uni-oldenburg.de -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2802	[[ ! -f a.out ]] && compile_error=true
2803	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2804	else
2805	[[ "$init_cmds" != "" ]] && eval $init_cmds
2806	[[ "$module_calls" != "" ]] && eval $module_calls
2807	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2808
2809	fi
2810
2811	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2812	then
2813	printf "\n +++ error occured while compiling or linking"
2814	locat=compile
2815
2816	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
2817	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
2818	# then
2819	exit
2820	# else
2821	# locat=normal
2822	# fi
2823	else
2824	printf "$striche\n *** compilation finished \n"
2825	fi
2826	fi
2827
2828
2829	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2830	if [[ $local_compile = true ]]
2831	then
2832	cd $HOME
2833	rm -rf $TEMPDIR
2834	locat=local_compile; exit
2835	fi
2836
2837
2838	# BEREITSTELLEN DER INPUT-DATEIEN
2839	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2840	(( i = 0 ))
2841	while (( i < iin ))
2842	do
2843	(( i = i + 1 ))
2844	if (( i == 1 ))
2845	then
2846	printf "\n\n *** providing INPUT-files:\n$striche"
2847	fi
2848
2849
2850	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2851	if [[ "${transin[$i]}" = unavailable ]]
2852	then
2853	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2854	then
2855	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2856	printf "\n is not available!"
2857	else
2858	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2859	printf "\n is not available!"
2860	fi
2861	continue
2862	fi
2863
2864	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2865	files_for_pes=false; datentyp=file
2866	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2867	then
2868	files_for_pes=true; datentyp=directory
2869	actionin[$i]=""
2870	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2871	then
2872	actionin[$i]=""
2873	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2874	then
2875	files_for_pes=true; datentyp=directory
2876	actionin[$i]="ar"
2877	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2878	then
2879	actionin[$i]="ar"
2880	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2881	then
2882	files_for_pes=true; datentyp=directory
2883	actionin[$i]="fl"
2884	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2885	then
2886	actionin[$i]="fl"
2887	fi
2888
2889	if [[ $files_for_pes = true ]]
2890	then
2891	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
2892	else
2893	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
2894	fi
2895
2896	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
2897	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
2898	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
2899	# SERVER ZU HOLEN
2900	if [[ "${actionin[$i]}" = fl ]]
2901	then
2902	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
2903	if [[ $files_for_pes = false ]]
2904	then
2905	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
2906	then
2907	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
2908	got_tmp[$i]=true
2909	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2910	then
2911	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2912	printf "\n *** trying to use backup copy in \"$WORK\" "
2913	cp $WORK/${frelin[$i]} ${localin[$i]}
2914	else
2915	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2916	printf "\n or \"$tmp_data_catalog\" does not exist!"
2917	printf "\n *** trying to get copy from archive"
2918	actionin[$i]=ar
2919	fi
2920	else
2921	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
2922	then
2923	mkdir ${localin[$i]}
2924	cd $tmp_data_catalog/${frelin[$i]}
2925	for file in $(ls *)
2926	do
2927	ln $file $TEMPDIR/${localin[$i]}
2928	done
2929	cd $TEMPDIR
2930	got_tmp[$i]=true
2931	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2932	then
2933	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2934	printf "\n *** trying to use backup copy in \"$WORK\" "
2935	cp -r $WORK/${frelin[$i]} ${localin[$i]}
2936	else
2937	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2938	printf "\n or \"$tmp_data_catalog\" does not exist!"
2939	printf "\n *** trying to get copy from archive"
2940	actionin[$i]=ar
2941	fi
2942	fi
2943	fi
2944
2945
2946	# DATEI LIEGT AUF ARCHIV-SERVER
2947	if [[ "${actionin[$i]}" = ar ]]
2948	then
2949
2950	if [[ $files_for_pes = false ]]
2951	then
2952	printf "\n file will be restored from archive-system ($archive_system)!"
2953	else
2954	printf "\n directory will be restored from archive-system ($archive_system)!"
2955	fi
2956
2957	file_restored=false
2958
2959	if [[ $archive_system = asterix ]]
2960	then
2961	do_stagein=true
2962	(( stagein_anz = 0 ))
2963	while [[ $do_stagein = true ]]
2964	do
2965	if [[ $files_for_pes = false ]]
2966	then
2967	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
2968	else
2969	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
2970	fi
2971	cat STAGEIN_OUTPUT
2972	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
2973	then
2974	file_restored=true
2975	do_stagein=false
2976	else
2977	(( stagein_anz = stagein_anz + 1 ))
2978	if (( stagein_anz == 10 ))
2979	then
2980	printf "\n +++ stagein stoped after 10 tries"
2981	locat=stage
2982	exit
2983	fi
2984	printf "\n +++ restoring from archive failed, trying again:"
2985	sleep 900
2986	fi
2987	done
2988	elif [[ $archive_system = DMF ]]
2989	then
2990	if [[ $files_for_pes = false ]]
2991	then
2992	printf "\n +++ restoring of single files impossible with $archive_system !\n"
2993	locat=DMF
2994	exit
2995	else
2996	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
2997	cp -r $ARCHIVE/${frelin[$i]} $PWD
2998	file_restored=true
2999	fi
3000	elif [[ $archive_system = tivoli ]]
3001	then
3002	if [[ $files_for_pes = false ]]
3003	then
3004	if [[ $localhost = lcsgih ]]
3005	then
3006	ssh $SSH_PORTOPT $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3007	else
3008	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3009	fi
3010	else
3011	(( inode = 0 ))
3012	while (( inode < nodes ))
3013	do
3014	if [[ $localhost = lcsgih ]]
3015	then
3016	ssh $SSH_PORTOPT $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3017	else
3018	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3019	fi
3020	(( inode = inode + 1 ))
3021	done
3022	fi
3023	file_restored=true
3024	elif [[ $archive_system = ut ]]
3025	then
3026	if [[ $files_for_pes = false ]]
3027	then
3028	cp $UT/${frelin[$i]} .
3029	else
3030	(( inode = 0 ))
3031	while (( inode < nodes ))
3032	do
3033	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
3034	(( inode = inode + 1 ))
3035	done
3036	fi
3037	file_restored=true
3038	else
3039	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
3040	locat=rearchive
3041	exit
3042	fi
3043
3044	if [[ $file_restored = true ]]
3045	then
3046
3047	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
3048	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
3049	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
3050	if [[ $files_for_pes = false ]]
3051	then
3052	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
3053	else
3054	mkdir $tmp_data_catalog/${frelin[$i]}
3055	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
3056	fi
3057	got_tmp[$i]=true
3058
3059	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
3060	mv ${frelin[$i]} ${localin[$i]}
3061
3062	fi
3063	fi
3064
3065
3066	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
3067	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
3068	then
3069
3070	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
3071	then
3072
3073	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
3074	printf "\n file will be provided for $numprocs processors"
3075	mkdir ${localin[$i]}
3076	ival=$numprocs
3077	(( ii = 0 ))
3078	while (( ii <= ival-1 ))
3079	do
3080	if (( ii < 10 ))
3081	then
3082	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
3083	elif (( ii < 100 ))
3084	then
3085	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
3086	elif (( ii < 1000 ))
3087	then
3088	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
3089	else
3090	cp ${absnamein[$i]} ${localin[$i]}/_$ii
3091	fi
3092	(( ii = ii + 1 ))
3093	done
3094
3095	else
3096
3097	if [[ $files_for_pes = true ]]
3098	then
3099
3100	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
3101	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
3102	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
3103	# PER MOVE UMBENANNT WERDEN
3104	printf "\n providing $numprocs files for the respective processors"
3105	mkdir ${localin[$i]}
3106	if [[ $link_local_input = true ]]
3107	then
3108	printf " using ln -f\n"
3109	cd ${absnamein[$i]}
3110	for file in $(ls *)
3111	do
3112	ln -f $file ${localin[$i]}
3113	done
3114	cd $TEMPDIR
3115	fi
3116	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
3117	if [[ ! -f "${localin[$i]}/_0000" ]]
3118	then
3119	if [[ $link_local_input = true ]]
3120	then
3121	printf " ln failed for .../_0000, using cp...\n"
3122	fi
3123	cp -r ${absnamein[$i]}/* ${localin[$i]}
3124	fi
3125
3126	else
3127	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
3128	if [[ $link_local_input = true ]]
3129	then
3130	printf " using ln -f\n"
3131	ln -f ${absnamein[$i]} ${localin[$i]}
3132	fi
3133	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
3134	if [[ ! -f "${localin[$i]}" ]]
3135	then
3136	if [[ $link_local_input = true ]]
3137	then
3138	printf " ln failed, using cp...\n"
3139	fi
3140	cp ${absnamein[$i]} ${localin[$i]}
3141	fi
3142	fi
3143	fi
3144	fi
3145
3146	done
3147	if (( i != 0 ))
3148	then
3149	printf "\n$striche\n *** all INPUT-files provided \n"
3150	fi
3151
3152
3153	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
3154	(( i = 0 ))
3155	while (( i < iic ))
3156	do
3157	(( i = i + 1 ))
3158	if (( i == 1 ))
3159	then
3160	printf "\n\n *** execution of INPUT-commands:\n$striche"
3161	fi
3162	printf "\n >>> ${in_command[$i]}"
3163	eval ${in_command[$i]}
3164	if (( i == iic ))
3165	then
3166	printf "\n$striche\n"
3167	fi
3168	done
3169
3170
3171	# VERBLEIBENDE CPU-ZEIT BERECHNEN
3172	cpurest=${cpumax}.
3173
3174
3175	# START DVR STREAMING SERVER
3176	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3177	then
3178	if [[ "$dvr_server" != "" ]]
3179	then
3180
3181	printf "\n\n *** preparing the dvr streaming server configuration file"
3182
3183	# Check, if a dvr server is already running
3184	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
3185	if [[ "$running_dvrserver_id" != "" ]]
3186	then
3187
3188	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
3189	printf "\n This server is used instead starting a new one!"
3190	printf "\n If required, script \"process_dvr_output\" has to be run manually."
3191
3192	else
3193
3194	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
3195	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
3196	then
3197	cp ${PALM_BIN}/.dvrserver.config .
3198
3199	# Entering the BASEDIR, UID and GID into this file
3200	user_id=`id -u`
3201	group_id=`id -g`
3202	# & is needed as seperator, because TEMPDIR contains /
3203	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
3204	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
3205	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
3206	mv .dvrserver.3 .dvrserver.config
3207	rm .dvrserver.1 .dvrserver.2
3208
3209	# Start dvr server in background, get his id and print on terminal
3210	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
3211	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
3212	printf "\n *** streaming server with id=$dvrserver_id is started in background"
3213	local_dvrserver_running=.TRUE.
3214	else
3215	printf "\n +++ missing file \".dvrserver.config\" in directory:"
3216	printf "\n \"$PALM_BIN\" "
3217	locat=dvr
3218	exit
3219	fi
3220
3221	fi
3222
3223	else
3224	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
3225	fi
3226	fi
3227
3228
3229	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
3230	# LESEN VON PALM)
3231	cat > ENVPAR << %%END%%
3232	&envpar run_identifier = '$fname', host = '$localhost',
3233	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
3234	maximum_parallel_io_streams = $maximum_parallel_io_streams,
3235	maximum_cpu_time_allowed = ${cpumax}.,
3236	revision = '$global_revision',
3237	local_dvrserver_running = $local_dvrserver_running /
3238
3239	%%END%%
3240
3241
3242	# PROGRAMMSTART
3243	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
3244	PATH=$PATH:$TEMPDIR
3245
3246	# MPI debug option (argument checking, slows down execution due to increased latency)
3247	if [[ "$mpi_debug" = true ]]
3248	then
3249	export MPI_CHECK_ARGS=1
3250	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
3251	fi
3252
3253	if [[ "$totalview" = true ]]
3254	then
3255	printf "\n *** totalview debugger will be used"
3256	tv_opt="-tv"
3257	else
3258	tv_opt=""
3259	fi
3260
3261	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
3262	then
3263	if [[ "$ENVIRONMENT" = BATCH ]]
3264	then
3265	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
3266	then
3267	printf "\n +++ debug is allowed in interactive mode only"
3268	locat=debug
3269	exit
3270	fi
3271	fi
3272	if [[ $localhost = ibmh ]]
3273	then
3274
3275	# SETUP THE IBM MPI ENVIRONMENT
3276	export MP_SHARED_MEMORY=yes
3277	export AIXTHREADS_SCOPE=S
3278	export OMP_NUM_THREADS=$threads_per_task
3279	export AUTHSTATE=files
3280	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3281
3282	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
3283	export MP_ADAPTER_USE=shared
3284	export MP_CPU_USE=multiple
3285	export MP_TIMEOUT=1200
3286
3287	unset MP_TASK_AFFINITY
3288
3289	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
3290	#(( ii = 1 ))
3291	#while (( ii <= $numprocs ))
3292	#do
3293	# echo $localhost_realname >> hostfile
3294	# (( ii = ii + 1 ))
3295	#done
3296	#export MP_HOSTFILE=hostfile
3297
3298	if [[ "$LOADLBATCH" = yes ]]
3299	then
3300	totalview poe a.out $ROPTS
3301	else
3302	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3303	export TVDSVRLAUNCHCMD=ssh
3304	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3305	fi
3306	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
3307	then
3308	# CURRENTLY NO DEBUGGER ON LCSGI
3309	if [[ $run_coupled_model = true ]]
3310	then
3311	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
3312	locat=debug
3313	exit
3314	else
3315	echo "no_coupling" > runfile_atmos
3316	fi
3317	(( ii = $numprocs / $threads_per_task ))
3318	export OMP_NUM_THREADS=$threads_per_task
3319	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3320	if [[ $threads_per_task != 1 ]]
3321	then
3322	printf "\n threads per task: $threads_per_task"
3323	fi
3324	printf "\n\n"
3325	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3326	then
3327	# export MPI_LAUNCH_TIMEOUT=360
3328	if [[ "$totalview" = true ]]
3329	then
3330	printf "\n running totalview debugger"
3331	mpiexec_mpt $tv_opt -n $ii ./a.out $ROPTS < runfile_atmos
3332	else
3333	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3334	fi
3335	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3336	then
3337	# ulimit -s 300000 # A too large stack size causes problems
3338	# export MV2_NUM_PORTS=2
3339	# export MV2_CPU_MAPPING=0:1:2:3
3340	if [[ "$totalview" = true ]]
3341	then
3342	printf "\n running totalview debugger"
3343	mpiexec $tv_opt ./a.out $ROPTS < runfile_atmos
3344	else
3345	mpiexec ./a.out $ROPTS < runfile_atmos
3346	fi
3347	fi
3348	else
3349	printf "\n +++ no debug available on \"$localhost\" "
3350	printf "\n or not implemented in mrun so far"
3351	locat=debug
3352	exit
3353	fi
3354
3355	# end debug mode
3356	else
3357
3358	# normal execution
3359	if [[ -n $numprocs ]]
3360	then
3361	# RUNNING THE PROGRAM ON PARALLEL MACHINES
3362	if [[ $(echo $host \| cut -c1-3) = ibm ]]
3363	then
3364	# SETUP THE IBM MPI ENVIRONMENT
3365	if [[ $host != ibmh && $host != ibmkisti ]]
3366	then
3367	export MP_SHARED_MEMORY=yes
3368	export AIXTHREAD_SCOPE=S
3369	export OMP_NUM_THREADS=$threads_per_task
3370	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
3371	export AUTHSTATE=files
3372	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3373	# export MP_PRINTENV=yes
3374
3375	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3376	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3377	export MP_WAIT_MODE=poll
3378	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3379	fi
3380
3381	if [[ $host = ibmkisti ]]
3382	then
3383	export LANG=en_US
3384	export MP_SHARED_MEMORY=yes
3385	if [[ $threads_per_task = 1 ]]
3386	then
3387	export MP_SINGLE_THREAD=yes
3388	export MEMORY_AFFINITY=MCM
3389	else
3390	export OMP_NUM_THREADS=$threads_per_task
3391	fi
3392	fi
3393
3394	if [[ "$LOADLBATCH" = yes ]]
3395	then
3396	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3397	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3398	then
3399	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3400	else
3401	if [[ $run_coupled_model = false ]]
3402	then
3403	if [[ "$ocean_file_appendix" = true ]]
3404	then
3405	echo "precursor_ocean" > runfile_atmos
3406	else
3407	echo "precursor_atmos" > runfile_atmos
3408	fi
3409	else
3410	(( iia = $numprocs_atmos / $threads_per_task ))
3411	(( iio = $numprocs_ocean / $threads_per_task ))
3412	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3413	printf "\n using $coupled_mode coupling"
3414	printf "\n\n"
3415	echo "coupled_run $iia $iio" > runfile_atmos
3416	fi
3417	poe ./a.out $ROPTS < runfile_atmos
3418	fi
3419	else
3420	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
3421	then
3422	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3423	elif [[ $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibmy ]]
3424	then
3425	if [[ -f $hostfile ]]
3426	then
3427	cp $hostfile hostfile
3428	else
3429	(( ii = 1 ))
3430	while (( ii <= $numprocs ))
3431	do
3432	echo $localhost_realname >> hostfile
3433	(( ii = ii + 1 ))
3434	done
3435	fi
3436	export MP_HOSTFILE=hostfile
3437	if [[ $run_coupled_model = false ]]
3438	then
3439	if [[ "$ocean_file_appendix" = true ]]
3440	then
3441	echo "precursor_ocean" > runfile_atmos
3442	else
3443	echo "precursor_atmos" > runfile_atmos
3444	fi
3445	else
3446	(( iia = $numprocs_atmos / $threads_per_task ))
3447	(( iio = $numprocs_ocean / $threads_per_task ))
3448	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3449	printf "\n using $coupled_mode coupling"
3450	printf "\n\n"
3451	echo "coupled_run $iia $iio" > runfile_atmos
3452	fi
3453	if [[ $localhost = ibmy ]]
3454	then
3455	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3456	else
3457	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
3458	fi
3459
3460	else
3461	if [[ "$host_file" = "" ]]
3462	then
3463	printf "\n +++ no hostfile given in configuration file"
3464	locat=config_file
3465	exit
3466	else
3467	eval host_file=$host_file
3468	fi
3469	export MP_HOSTFILE=$host_file
3470	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3471	fi
3472	fi
3473	elif [[ $host = nech \|\| $host = necriam ]]
3474	then
3475	(( ii = nodes ))
3476	if [[ $ii = 1 ]]
3477	then
3478	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3479	export MPIPROGINF=YES
3480	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3481	echo "*** execution on single node with mpirun"
3482	mpirun -np $numprocs ./a.out $ROPTS
3483	else
3484	(( i = 0 ))
3485	while (( i < ii ))
3486	do
3487	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3488	(( i = i + 1 ))
3489	done
3490
3491	echo "#!/bin/sh" > mpi_exec_shell
3492	echo " " >> mpi_exec_shell
3493	echo "set -u" >> mpi_exec_shell
3494	echo "F_ERRCNT=0" >> mpi_exec_shell
3495	echo "MPIPROGINV=YES" >> mpi_exec_shell
3496	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3497	echo "cpurest=$cpurest" >> mpi_exec_shell
3498	echo "fname=$fname" >> mpi_exec_shell
3499	echo "localhost=$localhost" >> mpi_exec_shell
3500	echo "return_addres=$return_addres" >> mpi_exec_shell
3501	echo "return_username=$return_username" >> mpi_exec_shell
3502	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3503	echo "write_binary=$write_binary" >> mpi_exec_shell
3504	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3505	echo " " >> mpi_exec_shell
3506	echo "export F_ERRCNT" >> mpi_exec_shell
3507	echo "export MPIPROGINV" >> mpi_exec_shell
3508	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3509	echo "export cpurest" >> mpi_exec_shell
3510	echo "export fname" >> mpi_exec_shell
3511	echo "export localhost" >> mpi_exec_shell
3512	echo "export return_addres" >> mpi_exec_shell
3513	echo "export return_username" >> mpi_exec_shell
3514	echo "export tasks_per_node" >> mpi_exec_shell
3515	echo "export write_binary" >> mpi_exec_shell
3516	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3517	echo " " >> mpi_exec_shell
3518	echo "exec ./a.out" >> mpi_exec_shell
3519
3520	chmod u+x mpi_exec_shell
3521	export MPIPROGINF=YES
3522	mpirun -f multinode_config &
3523	wait
3524
3525	fi
3526	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
3527	then
3528
3529	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3530	# DOES NOT EXIST
3531	if [[ $host != lcsgih && $host != lcsgib && $host != lckyu* ]]
3532	then
3533	if [[ -f $hostfile ]]
3534	then
3535	cp $hostfile hostfile
3536	(( ii = $numprocs / $threads_per_task ))
3537	else
3538	(( ii = 1 ))
3539	while (( ii <= $numprocs / $threads_per_task ))
3540	do
3541	echo $localhost_realname >> hostfile
3542	(( ii = ii + 1 ))
3543	done
3544	fi
3545	eval zeile=\"`head -n $ii hostfile`\"
3546	printf "\n *** running on: $zeile"
3547	fi
3548
3549	(( ii = $numprocs / $threads_per_task ))
3550	export OMP_NUM_THREADS=$threads_per_task
3551	# echo "*** OMP_NUM_THREADS=$OMP_NUM_THREADS"
3552	if [[ $threads_per_task != 1 ]]
3553	then
3554	# increase stack size to unlimited, because large runs
3555	# may abort otherwise
3556	ulimit -Ss unlimited
3557	printf "\n threads per task: $threads_per_task stacksize: unlimited"
3558	fi
3559	if [[ $run_coupled_model = false ]]
3560	then
3561	if [[ "$ocean_file_appendix" = true ]]
3562	then
3563	echo "precursor_ocean" > runfile_atmos
3564	else
3565	echo "precursor_atmos" > runfile_atmos
3566	fi
3567	printf "\n\n"
3568	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3569	then
3570	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3571	then
3572	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3573	# export MPI_DSM_DISTRIBUTE=1
3574	# MPI_DSM_CPULIST: pin MPI processes to cores
3575	if [[ $use_openmp = false ]]
3576	then
3577	if [[ "$sgi_feature" = ice2 ]]
3578	then
3579	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
3580	else
3581	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3582	fi
3583	else
3584	unset MPI_DSM_CPULIST
3585	fi
3586	# MPI_IB_RAILS: use both IB rails on ICE2
3587	export MPI_BUFS_PER_HOST=512
3588	export MPI_IB_RAILS=2
3589	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3590	export MPI_CONNECTIONS_THRESHOLD=8192
3591	# echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
3592	export MPI_TYPE_DEPTH=20
3593	# echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
3594	export MPI_GROUP_MAX=64
3595	# echo "*** MPI_GROUP_MAX=$MPI_GROUP_MAX"
3596	if [[ $use_openmp = true ]]
3597	then
3598	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3599	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3600	else
3601	mpiexec_mpt -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3602	fi
3603
3604	# next is test for openmp usage
3605	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3606	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
3607	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3608	then
3609	export MV2_NUM_PORTS=2
3610	# The default setting of MV2_CPU_MAPPING gives best results
3611	# export MV2_ENABLE_AFFINITY=1
3612	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3613	# if [[ "$sgi_feature" = ice2 ]]
3614	# then
3615	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
3616	# else
3617	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3618	# fi
3619	if [[ $use_openmp = true ]]
3620	then
3621	unset MV2_CPU_MAPPING
3622	export MV2_ENABLE_AFFINITY=0
3623	fi
3624	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
3625	echo "*** MV2_ENABLE_AFFINITY=$MV2_ENABLE_AFFINITY"
3626	if [[ $use_openmp = true ]]
3627	then
3628	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3629	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3630	else
3631	mpiexec -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3632	fi
3633	elif [[ "$mpilib" = impi ]]
3634	then
3635	echo "mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos"
3636	mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos
3637	fi
3638	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3639	then
3640	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3641	elif [[ $host = lcflow ]]
3642	then
3643	mpiexec -machinefile $TMPDIR/machines -n $ii -env I_MPI_FABRICS shm:ofa a.out < runfile_atmos $ROPTS
3644	elif [[ $host = lcsb ]]
3645	then
3646	mpirun_rsh -hostfile $PBS_NODEFILE -np `cat $PBS_NODEFILE \| wc -l` a.out < runfile_atmos $ROPTS
3647	elif [[ $host = lckiaps ]]
3648	then
3649	mpirun -np $ii -f $PBS_NODEFILE a.out < runfile_atmos $ROPTS
3650	elif [[ $host = lckyu* ]]
3651	then
3652	mpiexec -n $ii ./a.out < runfile_atmos $ROPTS
3653	else
3654	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3655	fi
3656	else
3657
3658	# currently there is no full MPI-2 support on ICE and XT4
3659	(( iia = $numprocs_atmos / $threads_per_task ))
3660	(( iio = $numprocs_ocean / $threads_per_task ))
3661	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3662	printf "\n using $coupled_mode coupling"
3663	printf "\n\n"
3664
3665	if [[ $coupled_mode = "mpi2" ]]
3666	then
3667	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3668	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3669	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3670	then
3671
3672	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3673	then
3674	# export MPI_LAUNCH_TIMEOUT=360
3675	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3676	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3677	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3678	then
3679	# ulimit -s 300000 # A too large stack size causes problems
3680	# export MV2_NUM_PORTS=2
3681	# export MV2_CPU_MAPPING=0:1:2:3
3682	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3683	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3684	fi
3685
3686	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3687	then
3688
3689	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3690	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3691
3692	else
3693	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3694	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3695	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3696	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3697	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3698	fi
3699	wait
3700
3701	else
3702
3703	echo "coupled_run $iia $iio" > runfile_atmos
3704	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3705	then
3706
3707	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3708	then
3709	# export MPI_LAUNCH_TIMEOUT=360
3710	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3711	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3712	then
3713	# ulimit -s 300000 # A too large stack size causes problems
3714	# export MV2_NUM_PORTS=2
3715	# export MV2_CPU_MAPPING=0:1:2:3
3716	mpiexec ./a.out $ROPTS < runfile_atmos
3717	fi
3718
3719	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3720	then
3721
3722	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3723
3724	elif [[ $host = lck \|\| $host = lckordi ]]
3725	then
3726	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3727	fi
3728	wait
3729	fi
3730
3731	fi
3732	elif [[ $host = lckyoto ]]
3733	then
3734	set -xv
3735	export P4_RSHCOMMAND=plesh
3736	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
3737	if [[ "$ENVIRONMENT" = BATCH ]]
3738	then
3739	if [[ "$cond2" = fujitsu ]]
3740	then
3741	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
3742	elif [[ "cond2" = pgi ]]
3743	then
3744	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
3745	else
3746	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
3747	fi
3748	else
3749	if [[ "$cond2" = "" ]]
3750	then
3751	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
3752	else
3753	mpirun -np $numprocs ./a.out $ROPTS
3754	fi
3755	fi
3756	set +xv
3757	elif [[ $host = lctit ]]
3758	then
3759	export OMP_NUM_THREADS=$threads_per_task
3760	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3761	if [[ "$threads_per_task" != 1 ]]
3762	then
3763	export MV2_ENABLE_AFFINITY=0
3764	fi
3765	echo "----- PBS_NODEFILE content:"
3766	cat $PBS_NODEFILE
3767	echo "-----"
3768	(( ii = $numprocs / $threads_per_task ))
3769	echo "mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS"
3770	mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS
3771	else
3772	mpprun -n $numprocs a.out $ROPTS
3773	fi
3774	[[ $? != 0 ]] && execution_error=true
3775
3776
3777	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3778	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3779	then
3780	apprentice
3781	fi
3782	else
3783	a.out $ROPTS
3784	fi
3785	fi
3786	if [[ $? != 0 \|\| $execution_error = true ]]
3787	then
3788
3789	# ABBRUCH BEI LAUFZEITFEHLER
3790	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3791	printf "\n +++ runtime error occured"
3792	locat=execution
3793	exit
3794	else
3795	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3796	printf "\n$striche\n *** execution finished \n"
3797
3798	# Stop the dvr streaming server and process the dvr output in order
3799	# to create dvrs- and html-files containing all streams
3800	if [[ "$dvrserver_id" != "" ]]
3801	then
3802	kill $dvrserver_id
3803	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3804
3805	# If there is a directory, data have been output by the
3806	# streaming server. Otherwise, user has chosen dvrp_output=local
3807	if [[ -d DATA_DVR ]]
3808	then
3809
3810	# Add the current dvr configuration file to the dvr output
3811	# directory
3812	cp .dvrserver.config DATA_DVR
3813
3814	# Process the dvr output (option -s for also generating
3815	# sequence mode data)
3816	process_dvr_output -d DATA_DVR -f $fname -s
3817
3818	else
3819
3820	# Process the local output
3821	process_dvr_output -l -d DATA_DVR -f $fname
3822
3823	fi
3824
3825	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3826	then
3827
3828	# Process dvr output generated in local mode (dvrp_output=local)
3829	process_dvr_output -l -d DATA_DVR -f $fname
3830
3831	fi
3832	fi
3833
3834
3835
3836	# Call of combine_plot_fields in order to merge single files written
3837	# by each PE into one file.
3838	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
3839	then
3840	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
3841	printf "\n 2d- and/or 3d-data may be incomplete!"
3842	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
3843	elif [[ "$combine_plot_fields" == true ]]
3844	then
3845	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
3846	combine_plot_fields${block}.x
3847	else
3848	# Temporary solution to skip combine_plot_fields. This is necessary in case of huge amount of
3849	# data output. To do: extend this branch by creating a batch job for combine_plot_fields.
3850	printf "\n\n\n *** post-processing: skipping combine_plot_fields (-Z option set) ..."
3851	fi
3852
3853
3854
3855	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3856	(( i = 0 ))
3857	while (( i < ioc ))
3858	do
3859	(( i = i + 1 ))
3860	if (( i == 1 ))
3861	then
3862	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
3863	fi
3864	printf "\n >>> ${out_command[$i]}"
3865	eval ${out_command[$i]}
3866	if (( i == ioc ))
3867	then
3868	printf "\n$striche\n"
3869	fi
3870	done
3871
3872
3873	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
3874	if [[ $do_trace = true ]]
3875	then
3876	printf "\n\n"
3877	ls -al
3878	fi
3879
3880
3881
3882	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
3883	(( i = 0 ))
3884	while (( i < iout ))
3885	do
3886	(( i = i + 1 ))
3887	if (( i == 1 ))
3888	then
3889	printf "\n\n *** saving OUTPUT-files:\n$striche"
3890	fi
3891
3892	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3893	files_for_pes=false; filetyp=file
3894	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
3895	then
3896	files_for_pes=true; filetyp=directory
3897	actionout[$i]=""
3898	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
3899	then
3900	actionout[$i]=""
3901	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
3902	then
3903	files_for_pes=true; filetyp=directory
3904	actionout[$i]="ar"
3905	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
3906	then
3907	actionout[$i]="ar"
3908	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
3909	then
3910	files_for_pes=true; filetyp=directory
3911	actionout[$i]="fl"
3912	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
3913	then
3914	actionout[$i]="fl"
3915	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
3916	then
3917	files_for_pes=true; filetyp=directory
3918	actionout[$i]="tr"
3919	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
3920	then
3921	actionout[$i]="tr"
3922	fi
3923
3924	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
3925	then
3926	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
3927	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
3928	then
3929	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
3930	else
3931
3932
3933	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3934	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3935	# REMOTE-RECHNUNGEN
3936	if [[ "${actionout[$i]}" = tr ]]
3937	then
3938	if [[ $localhost != $fromhost ]]
3939	then
3940	if [[ $files_for_pes = false ]]
3941	then
3942	cps=""
3943	cst=""
3944	else
3945	cps=-c
3946	cst="/"
3947	fi
3948	if [[ $localhost = nech ]]
3949	then
3950
3951	# TRANSFER IN EIGENSTAENDIGEM JOB
3952	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3953	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3954	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3955	if [[ $files_for_pes = false ]]
3956	then
3957	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3958	else
3959	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
3960	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
3961	fi
3962
3963	echo "set -x" > transfer_${localout[$i]}
3964	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3965
3966	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
3967	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
3968	printf "\n or higher cycle\n"
3969	echo "batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3970
3971	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3972
3973	if [[ $localhost = nech ]]
3974	then
3975	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
3976	else
3977	if [[ "$LOGNAME" = b323013 ]]
3978	then
3979	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
3980	else
3981	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
3982	fi
3983	fi
3984
3985	else
3986
3987	# TRANSFER INNERHALB DIESES JOBS
3988	transfer_failed=false
3989	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
3990	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
3991	batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3992	[[ $? != 0 ]] && transfer_failed=true
3993
3994	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3995	# LOKALER MASCHINE ANLEGEN
3996	if [[ $transfer_failed = true ]]
3997	then
3998	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3999	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4000
4001	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4002	# ANLEGEN.
4003	eval local_catalog=${pathout[$i]}
4004	if [[ ! -d $local_catalog ]]
4005	then
4006	printf " *** local directory does not exist. Trying to create:\n"
4007	printf " $local_catalog \n"
4008	mkdir -p $local_catalog
4009	fi
4010	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4011	transfer_problems=true
4012	fi
4013	fi
4014	else
4015
4016	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
4017	actionout[$i]=""
4018	fi
4019	fi
4020
4021
4022	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
4023	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
4024	# REMOTE-RECHNUNGEN
4025	if [[ "${actionout[$i]}" = tra ]]
4026	then
4027	if [[ $localhost != $fromhost ]]
4028	then
4029	if [[ $localhost = ibmh \|\| $localhost = nech ]]
4030	then
4031
4032	# TRANSFER IN EIGENSTAENDIGEM JOB
4033	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4034	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4035	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4036	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4037
4038	echo "set -x" > transfer_${localout[$i]}
4039	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4040
4041	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
4042	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
4043	printf "\n or higher cycle\n"
4044	echo "batch_scp $PORTOPT -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4045
4046	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4047
4048	if [[ $localhost = nech ]]
4049	then
4050	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
4051	else
4052	if [[ $LOGNAME = b323013 ]]
4053	then
4054	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4055	else
4056	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4057	fi
4058	fi
4059
4060	else
4061
4062	# TRANSFER INNERHALB DIESES JOBS
4063	transfer_failed=false
4064	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
4065	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
4066	batch_scp $PORTOPT -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4067	[[ $? != 0 ]] && transfer_failed=true
4068
4069	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4070	# LOKALER MASCHINE ANLEGEN
4071	if [[ $transfer_failed = true ]]
4072	then
4073	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4074	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4075
4076	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4077	# ANLEGEN
4078	eval local_catalog=${pathout[$i]}
4079	if [[ ! -d $local_catalog ]]
4080	then
4081	printf " *** local directory does not exist. Trying to create:\n"
4082	printf " $local_catalog \n"
4083	mkdir -p $local_catalog
4084	fi
4085
4086	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4087	transfer_problems=true
4088	fi
4089	fi
4090	else
4091
4092	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
4093	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
4094	actionout[$i]=a
4095	fi
4096	fi
4097
4098
4099	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
4100	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
4101	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
4102	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
4103	if [[ "${actionout[$i]}" = fl ]]
4104	then
4105	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4106	chmod g+rx $tmp_data_catalog
4107	if [[ $files_for_pes = false ]]
4108	then
4109	printf "\n >>> OUTPUT: ${localout[$i]} to"
4110	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4111	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
4112	else
4113	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
4114	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4115	mkdir $tmp_data_catalog/${frelout[$i]}
4116	cd ${localout[$i]}
4117	for file in $(ls *)
4118	do
4119	ln -f $file $tmp_data_catalog/${frelout[$i]}
4120	done
4121	cd $TEMPDIR
4122	fi
4123
4124
4125	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
4126	if [[ $store_on_archive_system = true ]]
4127	then
4128
4129	if [[ $archive_system = asterix ]]
4130	then
4131	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4132	if [[ $files_for_pes = false ]]
4133	then
4134	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4135	else
4136	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4137	fi
4138	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4139	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
4140	echo "then" >> archive_${frelout[$i]}
4141	echo " do_stageout=false" >> archive_${frelout[$i]}
4142	echo "else" >> archive_${frelout[$i]}
4143	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
4144	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
4145	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
4146	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
4147	if [[ $files_for_pes = false ]]
4148	then
4149	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
4150	else
4151	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
4152	fi
4153	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
4154	echo "fi" >> archive_${frelout[$i]}
4155	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4156	elif [[ $archive_system = DMF ]]
4157	then
4158	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4159	if [[ $files_for_pes = false ]]
4160	then
4161	printf "\n +++ archiving of single files impossible with $archive_system !\n"
4162	locat=DMF
4163	exit
4164	else
4165	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
4166	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
4167	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
4168	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
4169	fi
4170	elif [[ $archive_system = tivoli ]]
4171	then
4172	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4173	if [[ $files_for_pes = false ]]
4174	then
4175	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4176	echo "set -x" >> archive_${frelout[$i]}
4177	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4178	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4179	else
4180
4181	echo "set -x" >> archive_${frelout[$i]}
4182	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
4183	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4184	cd $tmp_data_catalog
4185	all_files=`ls -1 ${frelout[$i]}/*`
4186	cd - > /dev/null
4187	(( inode = 0 ))
4188	(( tp1 = tasks_per_node + 1 ))
4189	while (( inode < nodes ))
4190	do
4191	# echo "*** all_files = \"$all_files\" "
4192	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4193	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4194	# echo "*** tasks_per_node = \"$tasks_per_node\" "
4195	# echo "*** files = \"$files\" "
4196	# echo "*** all_files = \"$all_files\" "
4197	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4198	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4199	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
4200	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4201	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4202	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4203	(( inode = inode + 1 ))
4204	done
4205	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4206	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4207	fi
4208	elif [[ $archive_system = ut ]]
4209	then
4210	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4211	if [[ $files_for_pes = false ]]
4212	then
4213	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4214	echo "set -x" >> archive_${frelout[$i]}
4215	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4216	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4217	else
4218
4219	echo "set -x" >> archive_${frelout[$i]}
4220	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
4221	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
4222	cd $tmp_data_catalog
4223	all_files=`ls -1 ${frelout[$i]}/*`
4224	cd - > /dev/null
4225	(( inode = 0 ))
4226	(( tp1 = tasks_per_node + 1 ))
4227	while (( inode < nodes ))
4228	do
4229	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4230	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4231	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4232	(( inode = inode + 1 ))
4233	done
4234	fi
4235	elif [[ $archive_system = none ]]
4236	then
4237	printf " +++ archiving on $localhost not available!\n"
4238	fi
4239
4240	if [[ $archive_system != none ]]
4241	then
4242	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
4243	then
4244	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4245	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4246	elif [[ $localhost = nech ]]
4247	then
4248	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
4249	fi
4250	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4251	fi
4252	else
4253	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
4254	fi
4255
4256
4257	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
4258	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4259	if [[ $files_for_pes = false ]]
4260	then
4261	cat /dev/null > ${pathout[$i]}
4262	else
4263	mkdir -p ${pathout[$i]}
4264	fi
4265
4266	fi
4267
4268
4269	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
4270	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
4271	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4272	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
4273	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
4274	# GEMAESSEN ARCHIVIERUNGEN GESETZT
4275	if [[ "${actionout[$i]}" = ar ]]
4276	then
4277	if [[ $files_for_pes = false ]]
4278	then
4279	printf "\n >>> OUTPUT: ${localout[$i]} to"
4280	printf "\n ${pathout[$i]}"
4281	printf "\n File will be copied to archive-system ($archive_system) !\n"
4282	else
4283	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
4284	printf "\n ${pathout[$i]}"
4285	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
4286	fi
4287	mv ${localout[$i]} ${frelout[$i]}
4288
4289	file_saved=false
4290
4291	if [[ $archive_system = asterix ]]
4292	then
4293	do_stageout=true
4294	(( stageout_anz = 0 ))
4295	while [[ $do_stageout = true ]]
4296	do
4297	if [[ $files_for_pes = false ]]
4298	then
4299	stageout ${frelout[$i]} > STAGE_OUTPUT
4300	else
4301	stageout -t ${frelout[$i]} > STAGE_OUTPUT
4302	fi
4303	cat STAGE_OUTPUT
4304	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
4305	then
4306	file_saved=true
4307	do_stageout=false
4308	else
4309	if [[ $files_for_pes = false ]]
4310	then
4311	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
4312	else
4313	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
4314	fi
4315	(( stageout_anz = stageout_anz + 1 ))
4316	if (( stageout_anz == 10 ))
4317	then
4318	printf "\n +++ stoped after 10 unsuccessful tries!"
4319	archive_save=false
4320	do_stageout=false
4321	else
4322	printf "\n *** new try to store on archive after 15 min:"
4323	sleep 900
4324	fi
4325	fi
4326	done
4327	elif [[ $archive_system = DMF ]]
4328	then
4329	if [[ $files_for_pes = false ]]
4330	then
4331	printf "\n +++ archiving of single files impossible on $archive_system!\n"
4332	locat=DMF
4333	exit
4334	else
4335	rm -rf $ARCHIVE/${frelout[$i]}
4336	cp -r ${frelout[$i]} $ARCHIVE
4337	fi
4338	file_saved=true
4339	elif [[ $archive_system = tivoli ]]
4340	then
4341	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4342	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4343	# GELEGT WERDEN
4344	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4345	chmod g+rx $tmp_data_catalog
4346	if [[ $files_for_pes = false ]]
4347	then
4348	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4349	else
4350	mkdir $tmp_data_catalog/${frelout[$i]}
4351	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4352	fi
4353
4354	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4355	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4356	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4357	if [[ $files_for_pes = false ]]
4358	then
4359	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4360	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4361	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4362	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4363	else
4364	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4365	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4366	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4367	fi
4368
4369	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4370	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4371	file_saved=true
4372
4373	elif [[ $archive_system = ut ]]
4374	then
4375	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4376	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4377	# GELEGT WERDEN
4378	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4379	chmod g+rx $tmp_data_catalog
4380	if [[ $files_for_pes = false ]]
4381	then
4382	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4383	else
4384	mkdir $tmp_data_catalog/${frelout[$i]}
4385	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4386	fi
4387
4388	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4389	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4390	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4391	if [[ $files_for_pes = false ]]
4392	then
4393	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4394	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4395	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4396	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4397	else
4398	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4399	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4400	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4401	fi
4402
4403	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
4404	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4405	file_saved=true
4406
4407	else
4408	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
4409	archive_save=false
4410	fi
4411	if [[ $file_saved = true ]]
4412	then
4413	if [[ $files_for_pes = false ]]
4414	then
4415	cat /dev/null > ${pathout[$i]}
4416	else
4417	mkdir -p ${pathout[$i]}
4418	fi
4419	fi
4420	fi
4421
4422	# APPEND AUF LOKALER MASCHINE
4423	if [[ "${actionout[$i]}" = "a" ]]
4424	then
4425	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4426	then
4427	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}.${extout[$i]}\n"
4428	cat ${localout[$i]} >> ${pathout[$i]}.${extout[$i]}
4429	else
4430	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
4431	cat ${localout[$i]} >> ${pathout[$i]}
4432	fi
4433	fi
4434
4435	# KOPIEREN AUF LOKALER MASCHINE
4436	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
4437	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
4438	then
4439
4440	# KOPIEREN AUF EINPROZESSORMASCHINE
4441	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4442	then
4443	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
4444	if [[ $link_local_output = true ]]
4445	then
4446	printf " using ln -f\n"
4447	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4448	fi
4449	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4450	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
4451	then
4452	if [[ $link_local_output = true ]]
4453	then
4454	printf " ln failed, using cp...\n"
4455	fi
4456	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4457	fi
4458	else
4459	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
4460	if [[ $link_local_output = true ]]
4461	then
4462	printf " using ln -f\n"
4463	ln -f ${localout[$i]} ${pathout[$i]}
4464	fi
4465	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4466	if [[ ! -f "${pathout[$i]}" ]]
4467	then
4468	if [[ $link_local_output = true ]]
4469	then
4470	printf " ln failed, using cp...\n"
4471	fi
4472	cp ${localout[$i]} ${pathout[$i]}
4473	fi
4474	fi
4475
4476	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
4477	then
4478
4479	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
4480	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
4481	# WIRD DANN KOPIERT
4482	# PER MOVE UMBENANNT WERDEN
4483	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4484	if [[ $link_local_output = true ]]
4485	then
4486	printf " using ln -f\n"
4487	mkdir ${pathout[$i]}
4488	cd ${localout[$i]}
4489	for file in $(ls *)
4490	do
4491	ln -f $file ${pathout[$i]}
4492	done
4493	cd $TEMPDIR
4494	fi
4495	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4496	if [[ ! -f "${pathout[$i]}/_0000" ]]
4497	then
4498	if [[ $link_local_output = true ]]
4499	then
4500	printf " ln failed for .../_0000, using cp...\n"
4501	fi
4502	cp -r ${localout[$i]} ${pathout[$i]}
4503	fi
4504
4505	fi
4506	fi
4507	done
4508	if (( i != 0 ))
4509	then
4510	if [[ $transfer_problems = true ]]
4511	then
4512	printf "\n$striche\n *** OUTPUT-files saved"
4513	printf "\n +++ WARNING: some data transfers failed! \n"
4514	else
4515	printf "\n$striche\n *** all OUTPUT-files saved \n"
4516	fi
4517	fi
4518
4519
4520	# EVENTUELL FOLGEJOB STARTEN
4521	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4522	if [[ -f CONTINUE_RUN ]]
4523	then
4524
4525	if [[ $archive_save = true ]]
4526	then
4527
4528	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4529	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4530	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4531	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4532	# HANDEN
4533	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4534	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4535	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4536	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4537	then
4538	mc=`echo $mc \| sed 's/#/f/g'`
4539	fi
4540
4541
4542	# JOB STARTEN
4543	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4544	echo " $mc"
4545	printf "\n$striche\n"
4546	if [[ $localhost != $fromhost ]]
4547	then
4548
4549	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibms \|\| $localhost = lcflow \|\| $localhost = lckyu* ]]
4550	then
4551	echo "*** ssh will be used to initiate restart-runs!"
4552	echo " return_addres=\"$return_addres\" "
4553	echo " return_username=\"$return_username\" "
4554	if [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4555	then
4556	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4557	else
4558	if [[ $localhost = ibmkisti ]]
4559	then
4560	ssh $SSH_PORTOPT $usern@gaiad "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4561	else
4562	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4563	fi
4564	fi
4565	else
4566	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4567	locat=restart; exit
4568	fi
4569
4570	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4571	# DER AKTUELLE JOB ENDET
4572	if [[ $queue = special1q ]]
4573	then
4574	sleep 120
4575	else
4576	sleep 30
4577	fi
4578
4579	else
4580
4581	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4582	# RUFEN WERDEN, AUSSER AUF lcfimm
4583	cd $LOCAL_PWD
4584	if [[ $localhost = lcfimm ]]
4585	then
4586	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4587	elif [[ $localhost = lckyuh ]]
4588	then
4589	printf "\n +++ WARNING: no restart mechanism available for host \"$localhost\" "
4590	printf "\n please restart job manually using command:\n"
4591	printf "\n \"$mc\" "
4592	else
4593	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4594	fi
4595	cd - > /dev/null
4596	fi
4597	if [[ $localhost = lckyuh ]]
4598	then
4599	printf "\n$striche\n *** restart-run to be initiated manually\n"
4600	else
4601	printf "\n$striche\n *** restart-run initiated \n"
4602	fi
4603
4604
4605	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4606	# GEHOLT WORDEN SIND, LOESCHEN
4607	(( i = 0 ))
4608	while (( i < iin ))
4609	do
4610	(( i = i + 1 ))
4611	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4612	then
4613	rm -r $tmp_data_catalog/${frelin[$i]}
4614	fi
4615	done
4616
4617	else
4618
4619	printf "\n +++ no restart-run possible, since errors occured"
4620	printf "\n during the archive process"
4621	fi
4622
4623	fi
4624
4625
4626
4627	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4628	if [[ "$email_notification" != "none" ]]
4629	then
4630
4631	if [[ $localhost != $fromhost ]]
4632	then
4633	if [[ -f CONTINUE_RUN ]]
4634	then
4635	echo "PALM restart run necessary" > email_text
4636	echo "description header of actual run:" >> email_text
4637	cat CONTINUE_RUN >> email_text
4638	echo "mrun-command to restart:" >> email_text
4639	echo "$mc" >> email_text
4640	else
4641	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4642	fi
4643	mail $email_notification < email_text
4644	printf "\n *** email notification sent to \"$email_notification\" "
4645	fi
4646	fi
4647
4648
4649
4650	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4651	cd $HOME
4652	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4653
4654	else
4655
4656
4657	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4658	# CHENDE AKTIONEN DURCHGEFUEHRT
4659
4660	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4661	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
4662	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4663	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4664	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4665	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4666	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4667	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4668	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4669	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4670	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4671	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4672	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4673	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4674	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4675	if [[ $use_openmp = true ]]
4676	then
4677	mrun_com=${mrun_com}" -O $threads_per_task"
4678	fi
4679	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4680	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
4681	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4682	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4683	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4684	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4685	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4686	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4687	[[ "$check_namelist_files" = false ]] && mrun_com=${mrun_com}" -z"
4688	[[ "$combine_plot_fields" = false ]] && mrun_com=${mrun_com}" -Z"
4689	[[ "$max_par_io_str" != "" ]] && mrun_com=${mrun_com}" -w $max_par_io_str"
4690	if [[ $do_remote = true ]]
4691	then
4692	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4693	fi
4694
4695
4696	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4697	jobfile=jobfile.$RANDOM
4698
4699
4700	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4701	echo "mkdir $TEMPDIR" >> $jobfile
4702	echo "cd $TEMPDIR" >> $jobfile
4703
4704
4705	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4706	if [[ $do_trace = true ]]
4707	then
4708	echo "set -x" >> $jobfile
4709	else
4710	echo "set +vx" >> $jobfile
4711	fi
4712
4713
4714	# initialize the environment and load modules
4715	if [[ "$init_cmds" != "" ]]
4716	then
4717	echo "$init_cmds" >> $jobfile
4718	fi
4719	if [[ "$module_calls" != "" ]]
4720	then
4721	echo "$module_calls" >> $jobfile
4722	fi
4723
4724
4725	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4726	# DATEI FUER DEN JOB
4727	if [[ $( echo $host \| cut -c1-5 ) = lcsgi \|\| $host = ibmkisti ]]
4728	then
4729
4730	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4731	# KOPIEREN
4732	if [[ $restart_run != true ]]
4733	then
4734	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4735	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4736	fi
4737
4738	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4739	# (BEI JOBS AUF LOKALEM RECHNER REICHT CP)
4740	echo "set -x" >> $jobfile
4741	if [[ $host = $localhost ]]
4742	then
4743	echo "cp -r $working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4744	else
4745	if [[ $host != ibmkisti ]]
4746	then
4747	echo "scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4748	else
4749	# on KISTI's IBM firewall is only opened on interactive node
4750	echo "localdir=\`pwd\`" >> $jobfile
4751	echo "ssh $SSH_PORTOPT $remote_username@gaiad \"cd \$localdir; scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
4752	fi
4753	fi
4754	echo "export SOURCES_COMPLETE=true" >> $jobfile
4755
4756	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4757	# ARBEITSVERZEICHNIS VERSCHIEBEN
4758	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4759	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4760	echo "execute_mrun=true" >> $jobfile
4761	echo " " >> $jobfile
4762
4763	else
4764
4765	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4766	# SOWIE GEGEBENENFALLS DES MAKEFILES
4767	if [[ $do_compile = true ]]
4768	then
4769
4770	source_catalog=SOURCES_FOR_RUN_$fname
4771
4772	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4773	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4774	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4775	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4776	echo "export SOURCES_COMPLETE=true" >> $jobfile
4777	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4778
4779	for filename in $source_list
4780	do
4781	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4782	echo "cat > $filename << \"%END%\"" >> $jobfile
4783	cat $source_catalog/$filename >> $jobfile
4784	echo " " >> $jobfile
4785	echo "%END%" >> $jobfile
4786	echo " " >> $jobfile
4787	done
4788
4789	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4790	echo "cat > Makefile << \"%END%\"" >> $jobfile
4791	cat $source_catalog/Makefile >> $jobfile
4792	echo " " >> $jobfile
4793	echo "%END%" >> $jobfile
4794	echo " " >> $jobfile
4795
4796	echo "cd - > /dev/null" >> $jobfile
4797
4798	fi
4799
4800
4801	# ABSPEICHERN DER KONFIGURATIONSDATEI
4802	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4803	# Lines with #$ coming from the svn keyword substitution are
4804	# removed from the config file in order to avoid problems
4805	# with the SGE batch system
4806	echo "cat > $config_file << \"%END%\"" >> $jobfile
4807	if [[ $host = lckyuh ]]
4808	then
4809	# no cross compiler on compute node
4810	sed 's/frtpx/frt/g' $config_file >> $jobfile
4811	else
4812	sed 's/#$.*//g' $config_file >> $jobfile
4813	fi
4814	echo "%END%" >> $jobfile
4815	echo " " >> $jobfile
4816
4817
4818	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
4819	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4820	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
4821	if [[ $host = lckyuh ]]
4822	then
4823	sed 's/\/bin\/ksh/\/bin\/bash/g' ${PALM_BIN}/$mrun_script_name >> $jobfile
4824	else
4825	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
4826	fi
4827	echo "%END%" >> $jobfile
4828	echo "chmod u+x $mrun_script_name" >> $jobfile
4829	echo "execute_mrun=true" >> $jobfile
4830	echo " " >> $jobfile
4831
4832	fi
4833
4834
4835	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
4836	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
4837	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
4838	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
4839	if [[ $do_remote = true ]]
4840	then
4841	(( i = 0 ))
4842	while (( i < iin ))
4843	do
4844	(( i = i + 1 ))
4845	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
4846	if [[ "${transin[$i]}" = job ]]
4847	then
4848	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
4849	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
4850	echo " " >> $jobfile
4851	echo "%END%" >> $jobfile
4852	else
4853	echo "batch_scp $PORTOPT -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
4854	fi
4855
4856	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
4857	echo "if [[ \$? = 1 ]]" >> $jobfile
4858	echo "then" >> $jobfile
4859	echo " echo \" \" " >> $jobfile
4860	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
4861	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
4862	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
4863	echo " execute_mrun=false" >> $jobfile
4864	echo "fi" >> $jobfile
4865	done
4866	fi
4867
4868	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
4869	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
4870	echo "LOCAL_PWD=$working_directory" >> $jobfile
4871	echo "export LOCAL_PWD" >> $jobfile
4872
4873	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
4874	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
4875	echo "export LOCAL_MRUN_PATH" >> $jobfile
4876
4877	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
4878	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
4879	then
4880	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
4881	elif [[ $host = lcflow \|\| $localhost = lcflow ]]
4882	then
4883	echo "export PALM_BIN=$PALM_BIN" \| sed -e 's:'$HOME':$HOME:' >> $jobfile
4884	echo "export PATH=\$PATH:\$PALM_BIN" >> $jobfile
4885	fi
4886
4887	# MRUN AUF ZIELRECHNER AUFRUFEN (queue is workaround for ibmkisti)
4888	echo "set -x" >> $jobfile
4889	echo "queue=$queue" >> $jobfile
4890	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
4891	echo 'ls -al; echo `pwd`' >> $jobfile
4892	echo "cd \$HOME" >> $jobfile
4893	echo "rm -rf $TEMPDIR" >> $jobfile
4894
4895
4896
4897
4898	# JOB PER SUBJOB STARTEN
4899	if [[ $silent = false ]]
4900	then
4901	printf "\n "
4902	else
4903	printf "\n\n"
4904	fi
4905
4906	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $PORTOPT $jobfile
4907	rm -rf $jobfile
4908
4909
4910	fi # ENDE REMOTE-TEIL
4911
4912
4913
4914	# ENDE DER PROZEDUR

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