Home

Context Navigation

source: palm/trunk/SCRIPTS/mrun @ 986

Last change on this file since 986 was 986, checked in by maronga, 12 years ago
bugfix in mrun (restart runs)
Property svn:keywords set to `Id Rev`
File size: 189.2 KB

Line
1	#!/bin/ksh
2	# mrun - script for running PALM jobs
3	# $Id: mrun 986 2012-08-22 09:55:16Z maronga $
4
5	# Procedure for interactive/batch PALM runs (initial runs and automatic
6	# restart runs)
7
8	# Last changes:
9	# 03/03/94 - Siggi - Entwicklungsbeginn
10	# 21/03/94 - Siggi - Entwicklungsabschluss (Version 1.0)
11	# 09/12/94 - Siggi - allexport unterbunden; statt dessen werden jetzt ein-
12	# zelne Variable exportiert. Dies ist noetig, weil an-
13	# sonsten irgendein Speicher ueberlaeuft und von mrun
14	# aufgerufene Programme (z.B. stageout) mit Fehlern
15	# abbrechen (too many arguments)
16	# 20/06/95 - Siggi - noclobber muss explizit abgeschaltet, da jetzt
17	# defaultmaessig im RRZN-Profile eingeschaltet
18	# 10/06/97 - Siggi - Zusaetzliche Option -C bei cpp, damit // nicht
19	# wegfallen
20	# 25/04/00 - Siggi - Version 1.5
21	# remote_addres und remote_user in return_addres bzw.
22	# return_username umbenannt, return_username wird dem
23	# mrun-Aufruf im Job ueber Option -U mitgegeben.
24	# Neue Variable remote_username, die beim interaktiven
25	# mrun-Aufruf zwingend ueber die neue Option -u oder
26	# in der Konfigurationsdatei angegeben werden muss.
27	# 08/02/01 - Siggi - Alle mrun-Meldungen ins englische uebersetzt,
28	# Version 1.7
29	# 05/05/02 - Siggi - Uebersetzungen mittels make-Mechanismus moeglich
30	# 21/11/02 - Siggi - ENV-Variable XLFRTEOPTS wird vor Ausfuehrung auf
31	# IBM gesetzt, um Record-Laenge der NAMELIST-Dateien,
32	# zu bestimmen; Praeprozessoroptionen haben nun alle
33	# die Form -Dtext=text, weil auf IBM sonst text durch
34	# die leere Zeichenkette ersetzt wird
35	# 01/08/03 - Siggi - Test of implementing dvrp+1PE on ibm
36	# 07/01/04 - Siggi - additional preprocessor directive for ibm included
37	# (-D$OMP=OMP) in order to avoid problems with
38	# OMP_NUM_THREADS
39	# 04/01/05 - Siggi - archiving on hanni and berni is done in separate
40	# tar files, one for each node used
41	# 07/01/04 - Siggi - old code for t3e, vpp and hpcs eliminated
42	# 09/01/05 - Siggi - workaround for getting the IP address on gfdl3
43	# 17/01/05 - Siggi - job for data transfer to local machine now within
44	# job class c1 (HLRN)
45	# 27/01/05 - Siggi - IP address workaround for gfdl3 removed
46	# 28/01/05 - Siggi - tar-filenames on $PERM (HLRN) now include the
47	# base filename and cycle number
48	# 16/02/05 - Gerald - hababai validated
49	# 14/03/05 - Siggi - abort on NEC after first runtime error (F_ERRCNT)
50	# 29/03/05 - Marcus - berni*-en0 validated
51	# 21/04/05 - Siggi - transfer-job-protocol for avs-data is no more stored
52	# 24/04/05 - Siggi - netcdf support on lcmuk
53	# 25/04/05 - Siggi - netcdf support on gfld3 (decalpha)
54	# 11/05/05 - Siggi - files with non-numeric extensions (.xxx after cycle
55	# number) can now be used within interactive runs
56	# 12/05/05 - Siggi - netcdf support on ibm
57	# 13/05/05 - Siggi - error in tar-filenames on $PERM (HLRN) removed
58	# 18/05/05 - Siggi - netcdf support on nec
59	# 24/05/05 - Siggi - netcdf support on ibms
60	# 14/06/05 - Siggi - sleep interval after submit of restart job increased
61	# to 30 seconds
62	# 28/06/05 - Siggi - bora adjusted to new intel compiler (LD_LIBRARY_
63	# PATH is temporarily set)
64	# 07/09/05 - Siggi - setting of MP_EAGER_LIMIT switched off because it
65	# caused warnings in the job protocol
66	# 20/10/05 - Siggi - update of netcdf-version on decalpha (gfdl3)
67	# 25/10/05 - Siggi - error in listing files for getting the cycle number
68	# removed
69	# 26/10/05 - Siggi - new paths for dvrp-library, transfer of catalogs
70	# realized by file attribute trpe
71	# 28/10/05 - Siggi - if existing, the file extension is output in case
72	# of missing input file - no job abort in case of
73	# missing input files with file extensions
74	# (preliminary solution)
75	# 31/10/05 - Siggi - data transfer from nech now within seperate job
76	# 04/11/05 - Siggi - netcdf 3.6.0-p1 on ibmh/ibmb
77	# 07/12/05 - Siggi - gallego and elephanta admitted
78	# 30/12/05 - Siggi - gfdl5 (ibmy) admitted
79	# 10/01/06 - Siggi - cpp directive for NetCDF 64bit support
80	# 20/01/06 - Siggi - cpp directive for ibmy
81	# 09/02/06 - Siggi - ibmy admitted for batch mode
82	# 13/04/06 - Siggi - ostria admitted
83	# 18/04/06 - Siggi - usage of OpenMP implemented (additional option -O)
84	# 10/05/06 - Siggi - environment variable XLSMPOPTS set on IBM for
85	# optimization of OpenMP runs (option stacksize is
86	# necessary for large gridpoint numbers because
87	# otherwise a segmentation fault occurs)
88	# 23/05/05 - Siggi - lctit (SUN Fire X4600) admitted
89	# 21/08/06 - Siggi - standard mrun path on scirocco is as on bora
90	# 23/08/06 - Siggi - netcdf support for scirocco (notebook)
91	# 20/09/06 - Marcus - add DVRP library on nech
92	# 24/10/06 - Siggi - Environment variables for PALM steering are written
93	# on local NAMELIST file ENVPAR
94	# 24/11/06 - Siggi - levanto admitted, maestro switched to ifc 9.1
95	# 28/11/06 - Siggi - call to interpret_config.x_levanto because of SuSe 10
96	# 06/02/07 - Siggi - add DVRP library on lcmuk
97	# 07/02/07 - Siggi - revision of source code handling, source code is
98	# now expected in directory given by source_path and
99	# not in the current working directory, source code
100	# files provided in add_source_path are allways
101	# compiled, source code to be compiled is allways
102	# sampled in SOURCES_FOR_RUN_$fname which is a
103	# subdirectory of the current working directory,
104	# -s TEST changed to -s WRITE_PERMIT or -s WP,
105	# adapted for RIAM (neck)
106	# bugfix for cycle number of output file (extout)
107	# all hpmuk-related code removed
108	# 14/02/07 - Siggi - dvrp support for neck added
109	# 28/02/07 - Siggi - empty lines in configuration file are accepted
110	# mrun_path replaced by PALM_BIN,
111	# all machines are calling interpret_config.x
112	# 14/03/07 - Siggi - fimm admitted, revision number added to terminal
113	# output
114	# 16/03/07 - Siggi - adjustments for lctit
115	# 29/03/07 - Siggi - global revision transfered to batch job by new
116	# option -G
117	# 30/03/07 - Siggi - compilation "by hand" removed, cpp-directives/options
118	# + netcdf/dvrp-options are read from configuration
119	# file, host identifier (local_host) is read from
120	# config file, code related to ftp filetransfer
121	# removed (incl. option -f)
122	# 19/06/07 - Siggi - time limit for cdata jobs increased
123	# 25/07/07 - Siggi - two sets of executables can be started on lcmuk,
124	# if new option -Y (coupling) is given,
125	# output of executables to aout_output removed,
126	# messages are immediately written to stdout instead
127	# 03/08/07 - Marcus - add XOPT="-X $numprocs" for lcfimm
128	# 09/08/07 - Marcus - workaround on lcfimm to propagate environment
129	# variables out to the nodes in coupled mode -disabled-
130	# 13/08/07 - Marcus - start local restart jobs per ssh on lcfimm
131	# 28/08/07 - Marcus - completely remove workaround on lcfimm to propagate
132	# environment variables out to the nodes in coupled mode
133	# 15/10/07 - Siggi - Preliminary adjustments for lctit, based on Jin's
134	# suggestions
135	# 19/10/07 - Marcus - further adjustments for lctit: add new optional
136	# argument -g group_number, admit all sla* node_usage
137	# queues
138	# 30/10/07 - Marcus - further adjustments for queues on lctit
139	# 14/02/08 - Bjoern - link of restart files with long file name possible
140	# 28/02/08 - Marcus - If environment variable link_local_output is set to
141	# true, mrun tries "ln -f" on local output and resorts
142	# to "cp" or "cp -r" on error
143	# 15/04/08 - Siggi - argument -c introduced to most of the subjob calls,
144	# which allows the user to choose his own job catalog
145	# by setting job_catalog in the configuration file
146	# (default is ~/job_queue),
147	# workaround for mpiexec with -env option,
148	# adjustments for lcxt4 (Bergen Center for Computational
149	# Science)
150	# 22/05/08 - Marcus - If environment variable link_local_input is set to
151	# true, mrun tries "ln -f" on local input and resorts
152	# to "cp" or "cp -r" on error
153	# 27/05/08 - Siggi - PATH is set to PALM_BIN everywhere (missing so far)
154	# 14/07/08 - Siggi - adjustments for lcsgih
155	# 08/08/08 - Marcus - typo removed in lcxt4 branch
156	# 17/09/08 - Siggi - restart mechanism adjusted for lcsgi
157	# 02/10/08 - BjornM - argument "-Y" modified, adjustments for coupled runs
158	# 21/10/08 - Siggi - bugfix for the case that -K has more than one
159	# argument
160	# 08/11/08 - Siggi - bugfix for depository path settings in configuration
161	# file
162	# 11/11/08 - Siggi - rules for using user code files changed: user
163	# code splitted into one file per subroutine,
164	# user can provide his/her own makefile, only
165	# default source-code filenames are allowed
166	# 14/11/08 - Siggi - cond1 and cond2 are part of the depository name
167	# 08/01/09 - Siggi - mpi module on sgi machines to be used can be set
168	# with environment variable mpilib
169	# 13/01/09 - Siggi - totalview on hice/bice can be used in debug mode
170	# using environment variable totalview
171	# 25/02/09 - Siggi - cputime-option (-t) is allowed to be omitted for
172	# interactive runs
173	# 05/03/09 - Siggi - adjustments for new NEC-SX9 at RIAM (necriam)
174	# 16/03/09 - Siggi - dvrp_lib, dvrp_inc replaced by dvr_lib, dvr_inc,
175	# dvr streaming server is automatically started using
176	# new variable dvr_server and a configuration file
177	# .dvrserver.config,
178	# processing of dvr output files using new script
179	# process_dvr_output implemented, in order to make
180	# dvr application more user friendly
181	# 20/03/09 - Marcus - update of n1ge command for lctit
182	# 16/04/09 - Siggi - new option -y for precursor (uncoupled) ocean runs
183	# to be followed by a coupled atmosphere-ocean run
184	# 21/04/09 - Siggi - adjustments for new IBM at DKRZ, which is now ibmh
185	# 24/06/09 - BjornM - adjustments for coupled/precursor runs on ibmy
186	# 08/07/09 - Siggi - default value for email_notification is none,
187	# option -e added to subjob
188	# 19/08/09 - Marcus - MPI debug option
189	# 21/08/09 - Marcus - totalview on hice/bice also available for mvapich2
190	# 25/08/09 - BjornM - adpated for lck
191	# 26/08/09 - Siggi - additional environment variables for mpt on ice2
192	# 26/08/09 - Marcus - adjustment for ice2 on lcsgib
193	# 29/09/09 - Siggi - default value for archiving is false, option "-A"
194	# switches on archiving, archiving on SGI-ICE enabled
195	# 16/10/09 - Carolin- adjustments for archiving on SGI-ICE of binary files;
196	# adjustment for special1q
197	# 18/12/09 - Carolin- modification of archiving (permq)
198	# 01/02/10 - Siggi - adapted for lcxt5m and lckyoto (Fujitsu HX600)
199	# 03/02/10 - Siggi - make options (mopts) to be set by configuration file
200	# implemented
201	# 08/02/10 - Siggi - loading of modules now controlled via configuration
202	# file (modules)
203	# 02/03/10 - Siggi - for each block in the configuration file, separate
204	# utility programs are used, combine_plot_fields is
205	# directly called and must not be given by an output
206	# command in the configuration file any more
207	# 15/06/10 - Rieke - ssh from compute nodes to login nodes on hosts
208	# lcsgih/lcsgib is done using the names
209	# hicegate0/bicegate0 instead of the IP addresses
210	# 17/08/10 - BjornM - adjustments for interactive runs on lcxt4
211	# 07/09/10 - Siggi - bugfix for wrong netcdf/3.6.3 module on lcsgi
212	# 08/12/10 - Siggi - new handling of openmp/hybrid runs, option -O
213	# has now argument threads_per_task
214	# adjustments for Kyushu Univ. (lcrte, ibmku)
215	# 14/12/10 - Siggi - adjustments for new Tsubame system at Tokyo
216	# institute of technology (lctit)
217	# 23/12/10 - Micha - different number of processors in ocean and
218	# atmosphere is now allowed
219	# 02/02/10 - Siggi - further adjustments on Tsubame and concerning openMP
220	# usage
221	# 09/03/10 - Siggi - adjustments for ibmkisti, mpt bugfix for netCDF4
222	# usage, totalview usage extended
223	# 17/03/11 - Siggi - adjustments for openmp usage on ibmkisti
224	# 03/04/11 - Micha - added lckordi
225	# 06/04/11 - BjornM - bugfix for runs with mpt on lcsgi
226	# 17/08/11 - Siggi - extensions for impi library
227	# 18/08/11 - Siggi - bugfix for local append of output files with suffix
228	# (.nc)
229	# 18/08/11 - Marcus - support for Linux OS with German locale
230	# - properly report hosts on general Linux clusters
231	# 29/08/11 - BjornW - adapted for lcflow (ForWind cluster in Oldenburg)
232	# 29/08/11 - Carolin- initiating restart-run: adjustment of the path at
233	# IMUK
234	# 15/09/11 - Siggi - new option -w tp set the maximum number of parallel
235	# io streams, option -T is obligatory from now on
236	# 25/01/12 - BjornM - a namelist file check prior to the model run has
237	# been implemented (check_namelist_files).
238	# New option -z can be used to skip the check
239	# 03/02/12 - BjornM - namelist file check temporary disabled
240	# until severel bugs are fixed
241	# 08/02/12 - BjornM - bugfixes: skipping namelist file check in case of
242	# restart runs. check is now possible with topography
243	# and the -v (silent) option is considered
244	# 14/02/12 - BjornM/- bugfix: removed slash in \$queue, changed default
245	# Farah queue for lcsgi to testq, since bigq is not
246	# available on ice1
247	# 16/02/12 - BjornM - bugfix: replaced $localhost by $host in the ENVPAR
248	# file, which is generated for the namelist file check
249	# 17/02/12 - Siggi - -z included in description of options (mrun ?)
250	# 22/02/12 - Siggi - -s info updated
251	# 22/02/12 - Siggi - case "-s WP" removed
252	# 28/02/12 - BjornM - further adjustments for namelist file check
253	# 09/03/12 - Siggi - -T option not obligatory for lcflow
254	# 12/03/12 - Siggi - tasks_per_node divisor check not for lcflow
255	# 21/03/12 - Matthias - default compiler on ibmh changed
256	# 02/05/12 - Bjoern - lcxt4 is now lcxe6, adjustments for lcxe6,
257	# bugfixes for the parameter file check, initial
258	# commands on ssh calls sourced out to .mrun.config
259	# 05/06/12 - Bjoern - bugfixes for the parameter file check on lcxe6.
260	# combine_plot_fields can be switched off by the
261	# new mrun option -Z
262	# 08/06/12 - Bjoern - max_pr_user enabled for the namelist file check,
263	# sleep commands are now disabled in silent mode (-v)
264	# 06/08/12 - Bjoern - update: system update at imuk now requires (new)
265	# initial shell commands on ssh calls (automatic
266	# restart runs were not possible)
267	# 22/08/12 - Bjoern - bugfix: missing export statement in the previous
268	# update of the ssh calls
269
270	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
271
272	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
273	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
274	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
275
276	AddFilenames=""
277	additional_conditions=""
278	add_source_path=""
279	afname=""
280	archive_save=true
281	archive_system=none
282	check_namelist_files=true
283	combine_plot_fields=true
284	compiler_name=""
285	cond1=""
286	cond2=""
287	config_file=.mrun.config
288	coupled_dist=""
289	coupled_mode="mpi1"
290	cpp_opts=""
291	cpp_options=""
292	cpumax=0
293	cpurest=0
294	delete_temporary_catalog=true
295	do_batch=false
296	do_compile=true
297	do_remote=false
298	do_stagein=true
299	do_stageout=true
300	do_trace=false
301	email_notification="none"
302	exclude=""
303	executable=""
304	execution_error=false
305	fimm=false
306	fname=test
307	fromhost=""
308	global_revision=""
309	group_number=none
310	host=""
311	host_file=""
312	hp=""
313	ignore_archive_error=false
314	input_list=""
315	interpreted_config_file=""
316	job_catalog="~/job_queue"
317	job_on_file=""
318	keep_data_from_previous_run=false
319	link_local_input=false
320	link_local_output=false
321	localhost_realname=$(hostname)
322	local_compile=false
323	local_dvrserver_running=.FALSE.
324	locat=normal
325	mainprog=""
326	makefile=""
327	max_par_io_str=""
328	mc=$0
329	while [[ $(echo $mc \| grep -c "/") != 0 ]]
330	do
331	mc=`echo $mc \| cut -f2- -d"/"`
332	done
333	module_calls=""
334	mrun_script_name=$mc
335	netcdf_inc=""
336	netcdf_lib=""
337	netcdf_support=false
338	node_usage=default
339	numprocs=""
340	numprocs_atmos=0
341	numprocs_ocean=0
342	OOPT=""
343	openmp=false
344	output_list=""
345	package_list=""
346	punkte="..........................................................."
347	queue=none
348	read_from_config=""
349	restart_run=false
350	if [[ `hostname` = rte10 ]]
351	then
352	return_addres=133.5.185.60
353	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
354	elif [[ `hostname` = climate0 ]]
355	then
356	return_addres=165.132.26.68
357	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
358	else
359	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
360	fi
361	return_password=""
362	return_username=$LOGNAME
363	remotecall=false
364	remote_username=""
365	run_coupled_model=false
366	run_mode=""
367	scirocco=false
368	store_on_archive_system=false
369	striche=" ----------------------------------------------------------------------------"
370	silent=false
371	source_list=""
372	source_path=SOURCE
373	tasks_per_node=""
374	threads_per_task=1
375	tmpcreate=false
376	tmp_data_catalog=""
377	transfer_problems=false
378	usern=$LOGNAME
379	use_openmp=false
380	working_directory=`pwd`
381	TOPT=""
382	XOPT=""
383	zeit=$( date \| cut -c 12-19 )
384
385	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
386	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
387
388	typeset -R30 calltime
389	typeset -L20 spalte1
390	typeset -L40 spalte2
391	typeset -L60 spalte3
392	typeset -L35 string1=`date`
393	typeset -L12 string2=$usern
394	typeset -L12 string3=$localhost_realname
395	typeset -L12 string4
396	typeset -L12 string5
397	typeset -L30 version="MRUN 2.0 Rev$Rev: 986 $"
398
399
400
401	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
402	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
403
404	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
405	# EXPORTIERT WERDEN
406	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
407	export group_number input_list memory numprocs output_list queue run_mode
408
409
410
411	# FEHLERBEHANDLUNG
412	# BEI EXIT:
413	trap 'rm -rf $working_directory/tmp_mrun
414	if [[ $locat != localhost ]]
415	then
416	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
417	# then
418	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
419	#MRUN-calls on $localhost
420	#
421	#date and time user localhost remotehost termination mrun-command
422	#--------------------------------------------------------------------------------------------------------------------
423	#%STATEND%
424	# chmod 666 ${mrun_path}/statistik/mrun_statistik
425	# fi
426	#
427	# # EINTRAG IN DIE STATISTIK-DATEI
428	# string4=$host
429	# string5=$locat
430	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
431	# then
432	# if [[ $do_batch = true ]]
433	# then
434	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
435	# else
436	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
437	# fi
438	# fi
439	echo " " > /dev/null
440	fi
441
442	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
443	then
444
445	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
446	(( i = 0 ))
447	while (( i < iec ))
448	do
449	(( i = i + 1 ))
450	printf "\n *** Execution of ERROR-command:\n"
451	printf " >>> ${err_command[$i]}\n"
452	eval ${err_command[$i]}
453	done
454	if [[ -n $interpreted_config_file ]] then
455	rm -rf $interpreted_config_file
456	fi
457	if [[ -n .mrun_environment ]] then
458	rm -rf .mrun_environment
459	fi
460	if [[ $tmpcreate = true ]]
461	then
462	printf "\n *** Contents of \"$TEMPDIR\":\n"
463	ls -al; cd
464	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
465	fi
466	if [[ "$dvrserver_id" != "" ]]
467	then
468	echo "+++ killing dvrserver_id=$dvrserver_id"
469	kill $dvrserver_id
470	fi
471	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
472	then
473	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
474	fi
475	printf "\n\n+++ MRUN killed \n\n"
476	elif [[ $locat != control_c ]]
477	then
478	printf "\n\n --> all actions finished\n\n"
479	printf " Bye, bye $usern !!\n\n"
480	fi' exit
481
482
483	# BEI TERMINAL-BREAK:
484	trap 'rm -rf $working_directory/tmp_mrun
485	rm -rf $working_directory/tmp_check_namelist_files
486	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
487	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
488	then
489	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
490	fi
491	if [[ "$dvrserver_id" != "" ]]
492	then
493	echo "+++ killing dvrserver_id=$dvrserver_id"
494	kill $dvrserver_id
495	fi
496	printf "\n+++ MRUN killed by \"^C\" \n\n"
497	locat=control_c
498	exit
499	' 2
500
501
502	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
503	# BEEN SET
504	if [[ "$PALM_BIN" = "" ]]
505	then
506	printf "\n +++ environment variable PALM_BIN has not been set"
507	printf "\n please set it to the directory where the PALM scripts are located"
508	locat=palm_bin; exit
509	fi
510	export PATH=$PALM_BIN:$PATH
511
512
513
514	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
515	# FUER FOLGEJOBS BENOETIGT WIRD
516	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vw:xX:yY:zZ option
517	do
518	case $option in
519	(a) afname=$OPTARG;;
520	(A) store_on_archive_system=true; mc="$mc -A";;
521	(b) do_batch=true; mc="$mc -b";;
522	(B) delete_temporary_catalog=false; mc="$mc -B";;
523	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
524	(C) restart_run=true; mc="$mc -C";;
525	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
526	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
527	(F) job_on_file="-D"; mc="$mc -F";;
528	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
529	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
530	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
531	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
532	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
533	(I) ignore_archive_error=true; mc="$mc -I";;
534	(k) keep_data_from_previous_run=true; mc="$mc -k";;
535	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
536	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
537	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
538	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
539	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
540	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
541	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
542	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
543	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
544	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
545	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
546	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
547	(S) read_from_config=false; mc="$mc -S";;
548	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
549	(T) mrun_tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
550	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
551	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
552	(v) silent=true; mc="$mc -v";;
553	(w) max_par_io_str=$OPTARG; mc="$mc -w$OPTARG";;
554	(x) do_trace=true;set -x; mc="$mc -x";;
555	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
556	(y) ocean_file_appendix=true; mc="$mc -y";;
557	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
558	(z) check_namelist_files=false; mc="$mc -z";;
559	(Z) combine_plot_fields=false; mc="$mc -Z";;
560	(\?) printf "\n +++ unknown option $OPTARG \n"
561	printf "\n --> type \"$0 ?\" for available options \n"
562	locat=parameter;exit;;
563	esac
564	done
565
566
567	# EVTL. POSITIONSPARAMETER EINLESEN
568	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
569	shift OPTIND-1
570
571
572	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
573	if [[ "$1" = "?" ]]
574	then
575	(printf "\n *** mrun can be called as follows:\n"
576	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. -z -Z <modus> \n"
577	printf "\n Description of available options:\n"
578	printf "\n Option Description Default-Value"
579	printf "\n -a base name of input files equiv. -d"
580	printf "\n -A archiving when using file-attribute fl"
581	printf "\n -b batch-job on local machine ---"
582	printf "\n -B do not delete temporary directory at end ---"
583	printf "\n -c configuration file .mrun.config"
584	printf "\n -d base name of files attached to program test"
585	printf "\n -D preprocessor(cpp)-directives \"\" "
586	printf "\n -F create remote job file only ---"
587	printf "\n -h execution host $localhost_realname"
588	printf "\n -i INPUT control list \"\" "
589	printf "\n -I archiving errors of previous batch-jobs"
590	printf "\n will be ignored"
591	printf "\n -k keep data from previous run"
592	printf "\n -K additional conditions for controling"
593	printf "\n usage of conditional code and"
594	printf "\n env-variables in configuration file \"\" "
595	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
596	printf "\n -M Makefile name Makefile"
597	printf "\n -n node usage (shared/not_shared) depending on -h"
598	printf "\n -o OUTPUT control list \"\" "
599	printf "\n -O use OpenMP ---"
600	printf "\n -p software package list \"\" "
601	printf "\n -q queue \"$queue\" "
602	printf "\n -r run control list (combines -i -o) \"\" "
603	printf "\n -s filenames of routines to be compiled \"\" "
604	printf "\n must end with .f, .f90, .F, or .c !"
605	printf "\n use \"..\" for more than one file and wildcards"
606	printf "\n -s LM compiles all locally modified files"
607	printf "\n -S config file interpreted by shellscript ---"
608	printf "\n -t allowed cpu-time in seconds (batch) 0"
609	printf "\n -T tasks per node depending on -h"
610	printf "\n -u username on remote machine \"\" "
611	printf "\n -v no prompt for confirmation ---"
612	printf "\n -w maximum parallel io streams as given by -X"
613	printf "\n -x tracing of mrun for debug purposes ---"
614	printf "\n -X # of processors (on parallel machines) 1"
615	printf "\n -y add appendix \"_O\" to all local output"
616	printf "\n files (ocean precursor runs followed by"
617	printf "\n coupled atmosphere-ocean runs) ---"
618	printf "\n -Y run coupled model, \"#1 #2\" with"
619	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
620	printf "\n -z disable a priori parameter file check ---"
621	printf "\n -Z skip combine_plot_fields at the end of "
622	printf "\n the simulation ---"
623	printf "\n "
624	printf "\n Possible values of positional parameter <modus>:"
625	printf "\n \"?\" - this outline \n\n") \| more
626	exit
627	elif [[ "$1" != "" ]]
628	then
629	printf "\n +++ positional parameter $1 unknown \n"
630	locat=parameter; exit
631	fi
632
633
634
635	# KURZE STARTMELDUNG
636	printf "\n*** $version "
637	printf "\n will be executed. Please wait ..."
638
639
640
641	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
642	if [[ ! -f $config_file ]]
643	then
644	printf "\n\n +++ configuration file: "
645	printf "\n $config_file"
646	printf "\n does not exist"
647	locat=connect; exit
648	fi
649
650
651	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
652	line=""
653	grep "%host_identifier" $config_file > tmp_mrun
654	while read line
655	do
656	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
657	then
658	HOSTNAME=`echo $line \| cut -d" " -s -f2`
659	host_identifier=`echo $line \| cut -d" " -s -f3`
660	if [[ $localhost_realname = $HOSTNAME ]]
661	then
662	localhost=$host_identifier
663	break
664	fi
665	fi
666	done < tmp_mrun
667
668	if [[ "$localhost" = "" ]]
669	then
670	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
671	printf "\n for local host \"$localhost_realname\"."
672	printf "\n Please add line"
673	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
674	printf "\n to the configuration file."
675	locat=localhost; exit
676	fi
677
678
679	# HOSTSPEZIFISCHE VARIABLEN SETZEN
680	case $localhost_realname in
681	(r1\|r2\|h01\|b01) archive_system=tivoli;;
682	(cs*) archive_system=ut;;
683	(fimm.bccs.uib.no) fimm=true;;
684	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
685	(scirocco) scirocco=true;;
686	esac
687
688
689
690	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
691	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
692	[[ "$afname" = "" ]] && afname=$fname
693
694
695	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
696	if [[ "$run_mode" != "" ]]
697	then
698	input_list="$input_list $run_mode"
699	output_list="$output_list $run_mode"
700	fi
701
702
703	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
704	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
705	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
706	# STARTET)
707	if [[ "$fromhost" = "" ]]
708	then
709	fromhost=$localhost
710	fi
711
712
713	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
714	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
715	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
716	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
717	if [[ -n $host && "$host" != $localhost ]]
718	then
719	do_batch=true
720	do_remote=true
721	case $host in
722	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|nech\|necriam\|lckyoto\|lcsgib\|lcsgih\|unics\|lcxe6\|lcxt5m\|lck\|lckordi) true;;
723	(*) printf "\n"
724	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
725	printf "\n is not available"
726	locat=nqs; (( iec = 0 )); exit;;
727	esac
728	else
729	host=$localhost
730	fi
731
732
733	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
734	if [[ -n $additional_conditions ]]
735	then
736	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
737	cond1=`echo $additional_conditions \| cut -d" " -f1`
738	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
739	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
740	if [[ -n $dummy ]]
741	then
742	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
743	locat=options; exit
744	fi
745	block=_$cond1
746	[[ -n $cond2 ]] && block=${block}_$cond2
747	fi
748
749
750	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
751	if [[ $run_coupled_model = true ]]
752	then
753
754	if [[ -n $coupled_dist ]]
755	then
756
757	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
758	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
759
760	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
761	then
762
763	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
764	printf "\n PEs (total) : $numprocs"
765	printf "\n PEs (atmosphere): $numprocs_atmos"
766	printf "\n PEs (ocean) : $numprocs_ocean"
767	locat=coupling; exit
768
769	fi
770
771	else
772
773	(( numprocs_ocean = $numprocs / 2 ))
774	(( numprocs_atmos = $numprocs / 2 ))
775
776	fi
777	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
778
779	# GET coupled_mode FROM THE CONFIG FILE
780	line=""
781	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
782	while read line
783	do
784	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && ( $(echo $line \| cut -d" " -s -f4) = $cond1 \|\| $(echo $line \| cut -d" " -s -f4) = $cond2 ) ]]
785	then
786	coupled_mode="mpi2"
787	fi
788	done < tmp_mrun
789
790	fi
791
792
793	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
794	# ARCHIVIERUNG FEHLGESCHLAGEN IST
795	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
796	then
797	if [[ $ignore_archive_error = false ]]
798	then
799	printf "\n +++ data archiving of previous run failed"
800	printf "\n see directory \~/job_queue on remote machine"
801	locat=archive; exit
802	else
803	printf "\n +++ warning: data archiving in a previous run failed"
804	printf "\n MRUN continues, trying to get backup copy"
805	fi
806	fi
807
808
809
810	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
811	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
812	if [[ "$read_from_config" = false ]]
813	then
814
815	[[ $silent = false ]] && printf "\n Reading the configuration file... "
816	while read zeile
817	do
818	[[ $silent = false ]] && printf "."
819
820
821	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
822	# ERSETZEN
823	eval zeile=\"$zeile\"
824
825
826	# INTERPRETATION DER ZEILE
827	if [[ "$(echo $zeile)" = "" ]]
828	then
829	# LEERZEILE, KEINE AKTION
830	continue
831
832	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
833	then
834
835	# ZEILE IST KOMMENTARZEILE
836	true
837
838	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
839	then
840
841	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
842	zeile=$(echo $zeile \| cut -c2-)
843	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
844	var=`echo $zeile \| cut -d" " -f1`
845	value=`echo $zeile \| cut -d" " -s -f2`
846	for_host=`echo $zeile \| cut -d" " -s -f3`
847	for_cond1=`echo $zeile \| cut -d" " -s -f4`
848	for_cond2=`echo $zeile \| cut -d" " -s -f5`
849
850	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
851	then
852
853	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
854	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
855	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
856
857
858	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
859	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
860	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
861	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
862	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
863	# KONFIGURATIONSDATEI
864	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
865	then
866	eval $var=\$value
867
868	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
869	if [[ $do_trace = true ]]
870	then
871	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
872	fi
873	fi
874
875	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
876	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
877	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
878	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
879	if [[ $var = host ]]
880	then
881	if [[ -n $host && "$host" != $localhost ]]
882	then
883	do_batch=true
884	do_remote=true
885	case $host in
886	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckordi) true;;
887	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
888	printf "\n is not available"
889	locat=nqs; exit;;
890	esac
891	else
892	host=$localhost
893	fi
894	fi
895
896	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
897	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
898	# DEN PROGRAMMEN BENOETIGT WERDEN
899	export $var
900	fi
901
902
903
904
905	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
906	then
907
908	# ZEILE DEFINIERT ERROR-KOMMANDO
909	(( iec = iec + 1 ))
910	zeile=$(echo $zeile \| cut -c4-)
911	err_command[$iec]="$zeile"
912
913	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
914	then
915
916	# ZEILE DEFINIERT INPUT-KOMMANDO
917	(( iic = iic + 1 ))
918	zeile=$(echo $zeile \| cut -c4-)
919	in_command[$iic]="$zeile"
920
921	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
922	then
923
924	# ZEILE DEFINIERT OUTPUT-KOMMANDO
925	(( ioc = ioc + 1 ))
926	zeile=$(echo $zeile \| cut -c4-)
927	out_command[$ioc]="$zeile"
928
929	else
930
931	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
932	# s2a: in/out - Feld
933	# s2b: loc - Feld (optional)
934	# s2c: tr/ar - Feld (optional)
935	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
936	s1=`echo $zeile \| cut -d" " -f1`
937	s2=`echo $zeile \| cut -d" " -s -f2`
938	s2a=$(echo $s2 \| cut -d":" -f1)
939	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
940	then
941	s2b=""
942	s2c=""
943	else
944	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
945	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
946	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
947	fi
948	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
949	s3=`echo $zeile \| cut -d" " -f3`
950	s4=`echo $zeile \| cut -d" " -s -f4`
951	s5=`echo $zeile \| cut -d" " -s -f5`
952	s6=`echo $zeile \| cut -d" " -s -f6`
953
954
955	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
956	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
957	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
958	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
959	# HANDEN SEIN MUSS (D.H. s2b = loc)
960	IFSALT="$IFS"; IFS="$IFS:"
961	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
962	then
963	found=false
964	for actual in $input_list
965	do
966	for formal in $s3
967	do
968	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
969	done
970	done
971	if [[ $found = true ]]
972	then
973	(( iin = iin + 1 ))
974	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
975	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
976	extin[$iin]=$s6
977	fi
978	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
979	then
980	found=false
981	for actual in $output_list
982	do
983	for formal in $s3
984	do
985	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
986	done
987	done
988	if [[ $found = true ]]
989	then
990	(( iout = iout + 1 ))
991	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
992	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
993	fi
994	elif [[ "$s2a" != in && "$s2a" != out ]]
995	then
996	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
997	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
998	locat=connect; exit
999	fi
1000	IFS="$IFSALT"
1001	fi
1002	done < $config_file
1003
1004	else
1005
1006
1007	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
1008	[[ $silent = false ]] && printf "..."
1009	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
1010	export interpreted_config_file=.icf.$RANDOM
1011
1012
1013
1014	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
1015	# VERFUEGUNG STELLEN
1016	cat > .mrun_environment << %%END%%
1017	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
1018	config_file = '$config_file', do_remote = '$do_remote',
1019	do_trace = '$do_trace', host = '$host',
1020	input_list = '$input_list', icf = '$interpreted_config_file',
1021	localhost = '$localhost', output_list = '$output_list' /
1022
1023	%%END%%
1024
1025	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
1026	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
1027	mrun_memory=$memory
1028	mrun_group_number=$group_number
1029	mrun_cpumax=$cpumax
1030	mrun_numprocs=$numprocs
1031
1032	if [[ $localhost_realname = "sx-fep" ]]
1033	then
1034	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
1035	else
1036
1037	if [[ "$host" != $localhost ]]
1038	then
1039
1040	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
1041	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
1042	if [[ $? != 0 ]]
1043	then
1044	printf "\n\n +++ no interpret_config found"
1045	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
1046	locat=interpret_config; exit
1047	fi
1048	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
1049	$interpret_config_executable
1050
1051	else
1052
1053	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
1054	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
1055	then
1056	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
1057	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
1058	locat=interpret_config; exit
1059	else
1060	interpret_config${block}.x
1061	fi
1062
1063	fi
1064	fi
1065	rm .mrun_environment
1066
1067
1068	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
1069	chmod u+x $interpreted_config_file
1070	export PATH=$PATH:.
1071	. $interpreted_config_file
1072	rm $interpreted_config_file
1073
1074
1075	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
1076	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
1077	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
1078	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
1079	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
1080	[[ "$max_par_io_str" != "" ]] && maximum_parallel_io_streams=$max_par_io_str
1081	[[ "$mrun_tasks_per_node" != "" ]] && tasks_per_node=$mrun_tasks_per_node
1082
1083	fi
1084
1085
1086	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
1087	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
1088	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
1089	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
1090	if [[ "$SOURCES_COMPLETE" = "" ]]
1091	then
1092
1093	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
1094	# VEREINBART WURDE
1095	source_path=""
1096	line=""
1097	grep "%source_path" $config_file > tmp_mrun
1098	while read line
1099	do
1100	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1101	then
1102	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
1103	then
1104	global_source_path=`echo $line \| cut -d" " -f2`
1105	fi
1106	fi
1107	done < tmp_mrun
1108
1109	line=""
1110	found=false
1111	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
1112	while read line
1113	do
1114	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1115	then
1116	if [[ $found = true ]]
1117	then
1118	printf "\n\n +++ more than one source path found in configuration file"
1119	printf "\n for local host \"$localhost\" "
1120	locat=source_path; exit
1121	fi
1122	source_path=`echo $line \| cut -d" " -f2`
1123	found=true
1124	fi
1125	done < tmp_mrun
1126	rm tmp_mrun
1127
1128	if [[ "$source_path" = "" ]]
1129	then
1130	if [[ "$global_source_path" != "" ]]
1131	then
1132	source_path=$global_source_path
1133	else
1134	printf "\n\n +++ no source path found in configuration file"
1135	printf "\n for local host \"$localhost\" "
1136	locat=source_path; exit
1137	fi
1138	fi
1139	eval source_path=$source_path
1140
1141	if [[ ! -d $source_path ]]
1142	then
1143	printf "\n\n +++ source path \"$source_path\" on local host"
1144	printf "\n \"$localhost\" does not exist"
1145	locat=source_path; exit
1146	fi
1147
1148	fi
1149
1150
1151	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
1152	# DURCH OPTION -G MITGETEILT)
1153	if [[ "$global_revision" = "" && $host != "ibmkisti" ]]
1154	then
1155	global_revision=`svnversion $source_path 2>/dev/null`
1156	global_revision="Rev: $global_revision"
1157	fi
1158
1159
1160	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
1161	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
1162	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
1163	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
1164	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
1165	if [[ -n $host && "$host" != $localhost ]]
1166	then
1167	do_batch=true
1168	do_remote=true
1169	case $host in
1170	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckordi) true;;
1171	(*) printf "\n"
1172	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
1173	printf "\n is not available"
1174	locat=nqs; (( iec = 0 )); exit;;
1175	esac
1176	else
1177	host=$localhost
1178	fi
1179
1180
1181	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
1182	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1183	then
1184
1185	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
1186	if [[ ! -n $numprocs ]]
1187	then
1188	printf "\n"
1189	printf "\n +++ option \"-K parallel\" requires additional specification"
1190	printf "\n of the number of processors to be used by"
1191	printf "\n mrun-option \"-X\" or by environment-variable"
1192	printf "\n \"numprocs\" in the configuration file"
1193	locat=numprocs; (( iec = 0 )); exit
1194	fi
1195
1196	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
1197	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
1198	# GESAMTPROZESSORANZAHL IST
1199	if [[ "$tasks_per_node" = "" && $host != lcflow ]]
1200	then
1201	printf "\n"
1202	printf "\n +++ option \"-T\" (tasks per node) is missing"
1203	printf "\n set -T option or define tasks_per_node in the config file"
1204	locat=tasks_per_node; (( iec = 0 )); exit
1205	fi
1206	if [[ $host != lcflow ]]
1207	then
1208	(( ival = $tasks_per_node ))
1209	(( pes = numprocs ))
1210	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1211	# then
1212	# (( pes = pes - 1 ))
1213	# fi
1214	(( ii = pes / ival ))
1215	if (( pes - ii * ival > 0 ))
1216	then
1217	printf "\n"
1218	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1219	printf "\n divisor of the total number of processors (option \"-X\")"
1220	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1221	locat=tasks_per_node; (( iec = 0 )); exit
1222	fi
1223	fi
1224
1225
1226	# IBMY HAT NUR EINEN KNOTEN
1227	if [[ $host = ibmy ]]
1228	then
1229	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1230	then
1231	printf "\n"
1232	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1233	printf "\n total number of processors (option \"-X\")"
1234	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1235	locat=tasks_per_node; (( iec = 0 )); exit
1236	fi
1237	fi
1238
1239
1240	# SETTINGS FOR SUBJOB-COMMAND
1241	TOPT="-T $tasks_per_node"
1242	OOPT="-O $threads_per_task"
1243
1244	# GESAMTZAHL DER KNOTEN BESTIMMEN
1245	if [[ "$tasks_per_node" != "" ]]
1246	then
1247	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1248	fi
1249
1250	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1251	# SETZEN
1252	if [[ $node_usage = default ]]
1253	then
1254	if [[ $host = ibms ]]
1255	then
1256	node_usage=shared
1257	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1258	then
1259	node_usage=singlejob
1260	else
1261	node_usage=not_shared
1262	fi
1263	fi
1264
1265	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
1266	then
1267	printf "\n"
1268	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1269	printf "\n \"shared\" or \"not_shared\""
1270	locat=tasks_per_node; (( iec = 0 )); exit
1271	fi
1272
1273	fi
1274
1275	# PRUEFEN, OB HOSTFILE EXISTIERT
1276	if [[ -n $hostfile ]]
1277	then
1278	if [[ ! -f $hostfile ]]
1279	then
1280	printf "\n"
1281	printf "\n +++ hostfile \"$hostfile\" does not exist"
1282	locat=hostfile; exit
1283	fi
1284	fi
1285
1286	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1287	if [[ $host = ibmy && $do_remote = false ]]
1288	then
1289	if [[ ! -f $HOME/.rhosts ]]
1290	then
1291	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1292	printf "\n\n *** file:"
1293	printf "\n $HOME/.rhosts"
1294	printf "\n was created\n"
1295	fi
1296	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1297	then
1298	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1299	printf "\n\n *** file:"
1300	printf "\n $HOME/.rhosts"
1301	printf "\n was extended by the name of the current host\n"
1302	fi
1303	fi
1304
1305
1306	# Set default value for the maximum number of parallel io streams
1307	if [[ "$maximum_parallel_io_streams" = "" ]]
1308	then
1309	maximum_parallel_io_streams=$numprocs
1310	fi
1311
1312
1313	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1314	if [[ $queue = none ]]
1315	then
1316	case $host in
1317	(ibmh) queue=no_class;;
1318	(ibmkisti) queue=class.32plus;;
1319	(ibmy) queue=parallel;;
1320	(lckyoto) queue=ph;;
1321	(lcsgib) queue=testq;;
1322	(lcsgih) queue=testq;;
1323	(lctit) queue=S;;
1324	(nech) queue=none;;
1325	(necriam) queue=SP;;
1326	(unics) queue=unics;;
1327	esac
1328	fi
1329
1330
1331	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1332	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1333	# ERMITTELN
1334	(( i = 0 ))
1335	while (( i < iin ))
1336	do
1337	(( i = i + 1 ))
1338	(( maxcycle = 0 ))
1339
1340	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1341	if [[ "${actionin[$i]}" = di ]]
1342	then
1343	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1344	# REM-MASCHINE AUSWERTEN
1345	eval filename=${pathin[$i]}/${endin[$i]}
1346	else
1347	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1348	# REM-MASCHINE AUSWERTEN
1349	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1350	fi
1351	eval pathname=${pathin[$i]}
1352
1353	# SAVE INPUT FILE NAME FOR PARAMETER FILE CHECK
1354	if [[ ("${transin[$i]}" = job) && (-f $filename) ]]
1355	then
1356	filename_input=$filename
1357	fi
1358
1359	# PRUEFEN AUF VORHANDENSEIN
1360	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1361	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1362	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1363	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1364	then
1365	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1366	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1367	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1368	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1369	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1370	if [[ "${transin[$i]}" != "locopt" ]]
1371	then
1372	printf "\n\n +++ INPUT-file: "
1373	if [[ "${extin[$i]}" = "" ]]
1374	then
1375	printf "\n $filename"
1376	else
1377	printf "\n $filename.${extin[$i]}"
1378	fi
1379	printf "\n does not exist\n"
1380	locat=input; exit
1381	else
1382	transin[$i]="unavailable"
1383	fi
1384	else
1385
1386	# ZYKLUSNUMMER FESTSTELLEN
1387	ls -1 -d $filename > filelist 2>/dev/null
1388	ls -1 -d $filename.* >> filelist 2>/dev/null
1389	while read zeile
1390	do
1391	cycle=$(print $zeile \| cut -f2 -d".")
1392	if [[ "$cycle" = "$zeile" ]]
1393	then
1394	(( icycle = 0 ))
1395	elif [[ "$cycle" = "${extin[$i]}" ]]
1396	then
1397	(( icycle = 0 ))
1398	else
1399	(( icycle = $cycle ))
1400	fi
1401	if (( icycle > maxcycle ))
1402	then
1403	(( maxcycle = icycle ))
1404	file_to_be_used=$zeile
1405	fi
1406	done <filelist
1407	rm filelist
1408
1409	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1410	if (( maxcycle > 0 ))
1411	then
1412	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1413	then
1414	filename=${filename}.$maxcycle.${extin[$i]}
1415	else
1416	filename=${filename}.$maxcycle
1417	fi
1418	else
1419	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1420	then
1421	filename=${filename}.${extin[$i]}
1422	fi
1423	fi
1424
1425	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1426	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1427	absnamein[$i]=$filename
1428	if (( maxcycle > 0 ))
1429	then
1430	if [[ "${actionin[$i]}" = di ]]
1431	then
1432	frelin[$i]=${endin[$i]}.$maxcycle
1433	else
1434	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1435	fi
1436	else
1437	if [[ "${actionin[$i]}" = di ]]
1438	then
1439	frelin[$i]=${endin[$i]}
1440	else
1441	frelin[$i]=${afname}${endin[$i]}
1442	fi
1443	fi
1444
1445	fi
1446	done
1447
1448	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1449	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1450	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1451	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1452	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1453	(( i = 0 ))
1454	while (( i < iout ))
1455	do
1456	(( i = i + 1 ))
1457	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1458	then
1459	if [[ "${actionout[$i]}" = tr ]]
1460	then
1461	actionout[$i]=""
1462	elif [[ "${actionout[$i]}" = trpe ]]
1463	then
1464	actionout[$i]=pe
1465	elif [[ "${actionout[$i]}" = tra ]]
1466	then
1467	actionout[$i]=a
1468	fi
1469	(( maxcycle = 0 ))
1470	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1471	eval catalogname=${pathout[$i]}
1472	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1473	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1474	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1475	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1476	then
1477
1478	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1479	if cat /dev/null > $filename
1480	then
1481	rm $filename
1482	else
1483
1484	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1485	if [[ ! -d $catalogname ]]
1486	then
1487	if mkdir -p $catalogname
1488	then
1489	printf "\n\n *** directory:"
1490	printf "\n $catalogname"
1491	printf "\n was created\n"
1492	else
1493	printf "\n\n +++ OUTPUT-file:"
1494	printf "\n $filename"
1495	printf "\n cannot be created, because directory does not exist"
1496	printf "\n and cannot be created either"
1497	printf "\n"
1498	locat=output ; exit
1499	fi 2>/dev/null
1500	else
1501	printf "\n\n +++ OUTPUT-file:"
1502	printf "\n $filename"
1503	printf "\n cannot be created, although directory exists"
1504	printf "\n"
1505	locat=output ; exit
1506	fi
1507	fi 2>/dev/null
1508	else
1509
1510	# ZYKLUSNUMMER FESTSTELLEN
1511	ls -1 -d $filename > filelist 2>/dev/null
1512	ls -1 -d $filename.* >> filelist 2>/dev/null
1513	while read zeile
1514	do
1515	cycle=$(print $zeile \| cut -f2 -d".")
1516	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1517	then
1518	(( icycle = 1 ))
1519	else
1520	(( icycle = $cycle + 1 ))
1521	fi
1522	if (( icycle > maxcycle ))
1523	then
1524	(( maxcycle = icycle ))
1525	fi
1526	done <filelist
1527	rm filelist
1528	fi
1529
1530	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1531	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1532	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1533	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1534	if [[ "${actionout[$i]}" != a ]]
1535	then
1536	if (( maxcycle > 0 ))
1537	then
1538	filename=${filename}.$maxcycle
1539	if cat /dev/null > $filename
1540	then
1541	rm $filename
1542	else
1543	printf "\n +++ OUTPUT-file:"
1544	printf "\n $filename"
1545	printf "\n cannot be created"
1546	locat=output ; exit
1547	fi
1548	fi
1549	else
1550	(( maxcycle = maxcycle - 1 ))
1551	if (( maxcycle > 0 ))
1552	then
1553	filename=${filename}.$maxcycle
1554	fi
1555	fi
1556
1557	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1558	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1559	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1560	pathout[$i]=$filename
1561	if (( maxcycle > 0 ))
1562	then
1563	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1564	else
1565	frelout[$i]=${fname}${endout[$i]}
1566	fi
1567
1568	fi
1569	done
1570
1571
1572	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1573	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1574	then
1575	if [[ "$dvr_inc" = "" ]]
1576	then
1577	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1578	printf "\n This is required for the dvrp_graphics package.\n"
1579	locat=dvr; exit
1580	fi
1581	if [[ "$dvr_lib" = "" ]]
1582	then
1583	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1584	printf "\n This is required for the dvrp_graphics package.\n"
1585	locat=dvr; exit
1586	fi
1587	fi
1588
1589
1590	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1591	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1592	# UEBERSETZT ZU WERDEN)
1593	if [[ "$mainprog" = "" && "$executable" = "" ]]
1594	then
1595	printf "\n +++ neither main program nor executable defined"
1596	locat=source; exit
1597	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1598	then
1599	printf "\n +++ main program as well as executable defined"
1600	locat=source; exit
1601	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1602	then
1603	do_compile=false
1604	fi
1605
1606
1607	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1608	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1609	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1610	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1611	then
1612	rm -rf SOURCES_FOR_RUN_$fname
1613	mkdir SOURCES_FOR_RUN_$fname
1614	fi
1615
1616
1617	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1618	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1619	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1620	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1621	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1622	then
1623
1624	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1625
1626	if [[ "$source_list" = LOCALLY_MODIFIED ]]
1627	then
1628
1629	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1630	source_list=""
1631	cd $source_path
1632
1633
1634	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1635	if [[ ! -d .svn ]]
1636	then
1637	printf "\n\n +++ source directory"
1638	printf "\n \"$source_path\" "
1639	printf "\n is not under control of \"subversion\"."
1640	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1641	fi
1642
1643
1644	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1645	Filenames=""
1646	svn status > tmp_mrun
1647	while read line
1648	do
1649	firstc=`echo $line \| cut -c1`
1650	if [[ $firstc = M \|\| $firstc = "?" ]]
1651	then
1652	Name=`echo "$line" \| cut -c8-`
1653	extension=`echo $Name \| cut -d. -f2`
1654	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1655	then
1656	Filenames="$Filenames "$Name
1657	fi
1658	fi
1659	done < tmp_mrun
1660
1661
1662	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1663	for dateiname in $Filenames
1664	do
1665	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1666	source_list=$source_list"$dateiname "
1667	done
1668
1669	cd - > /dev/null
1670
1671
1672	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1673	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1674	# VORHANDEN
1675	elif [[ "$source_list" != "" && $restart_run != true ]]
1676	then
1677
1678	cd $source_path
1679
1680	for filename in $source_list
1681	do
1682
1683	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1684	if [[ $(print $filename \| grep -c "/") != 0 ]]
1685	then
1686	printf "\n +++ source code file: $filename"
1687	printf "\n must not contain (\"/\") "
1688	locat=source; exit
1689	fi
1690
1691	if [[ ! -f $filename ]]
1692	then
1693	printf "\n +++ source code file: $filename"
1694	printf "\n does not exist"
1695	locat=source; exit
1696	else
1697	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1698	fi
1699
1700	done
1701
1702	cd - > /dev/null
1703
1704	fi
1705
1706
1707	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1708	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1709	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1710	if [[ $restart_run != true ]]
1711	then
1712
1713	if [[ ! -f "$source_path/$mainprog" ]]
1714	then
1715	printf "\n\n +++ main program: $mainprog"
1716	printf "\n does not exist in source directory"
1717	printf "\n \"$source_path\"\n"
1718	locat=source; exit
1719	else
1720	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1721	then
1722	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1723	source_list=${mainprog}" $source_list"
1724	fi
1725	fi
1726	fi
1727
1728
1729	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1730	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1731	if [[ "$restart_run" != true ]]
1732	then
1733	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1734	if [[ ! -f $makefile ]]
1735	then
1736	printf "\n +++ file \"$makefile\" does not exist"
1737	locat=make; exit
1738	else
1739	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1740	fi
1741	fi
1742
1743
1744	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1745	if [[ $restart_run != true && "$add_source_path" != "" ]]
1746	then
1747
1748	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1749	if [[ ! -d $add_source_path ]]
1750	then
1751	printf "\n\n +++ WARNING: additional source code directory"
1752	printf "\n \"$add_source_path\" "
1753	printf "\n does not exist or is not a directory."
1754	printf "\n No source code will be used from this directory!\n"
1755	add_source_path=""
1756	if [[ $silent == false ]]
1757	then
1758	sleep 3
1759	fi
1760	else
1761
1762	cd $add_source_path
1763	found=false
1764
1765	Names=$(ls -1 *.f90 2>&1)
1766	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1767	Names=$(ls -1 *.F90 2>&1)
1768	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1769	Names=$(ls -1 *.F 2>&1)
1770	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1771	Names=$(ls -1 *.f 2>&1)
1772	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1773	Names=$(ls -1 *.c 2>&1)
1774	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1775
1776	cd - > /dev/null
1777	cd SOURCES_FOR_RUN_$fname
1778
1779	# COPY MAKEFILE IF EXISTING
1780	if [[ -f $add_source_path/Makefile ]]
1781	then
1782	printf "\n\n *** user Makefile from directory"
1783	printf "\n \"$add_source_path\" is used \n"
1784	if [[ $silent == false ]]
1785	then
1786	sleep 1
1787	fi
1788	cp $add_source_path/Makefile .
1789	fi
1790
1791	for dateiname in $AddFilenames
1792	do
1793	if [[ -f $dateiname ]]
1794	then
1795	printf "\n +++ source code file \"$dateiname\" found in additional"
1796	printf "\n source code directory \"$add_source_path\" "
1797	printf "\n but was also given with option \"-s\" which means that it should be taken"
1798	printf "\n from directory \"$source_path\"."
1799	locat=source; exit
1800	fi
1801
1802	cp $add_source_path/$dateiname .
1803	source_list="$source_list $dateiname"
1804
1805	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1806	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1807	then
1808	printf "\n\n +++ user file \"$dateiname\" "
1809	printf "\n is not listed in Makefile \n"
1810	locat=source; exit
1811	else
1812
1813	# Default User-Interface von der Liste entfernen, falls Datei
1814	# ein User-Interface enthaelt
1815	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1816	# then
1817	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1818	# then
1819	# rm -rf user_interface.f90
1820	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1821	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1822	# printf "\n since a user-interface is found in file"
1823	# printf "\n \"$add_source_path/$dateiname\" \n"
1824	# sleep 3
1825	# else
1826	if [[ $found = false ]]
1827	then
1828	found=true
1829	printf "\n\n *** following user file(s) added to the"
1830	printf " files to be translated:\n "
1831	fi
1832	printf "$dateiname "
1833	if [[ $silent == false ]]
1834	then
1835	sleep 0.5
1836	fi
1837
1838	fi
1839	done
1840	[[ $found = true ]] && printf "\n"
1841	cd - > /dev/null
1842	fi
1843	fi
1844
1845
1846	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1847	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1848	if [[ $restart_run != true && -n $package_list ]]
1849	then
1850
1851	cd $source_path
1852
1853	for package in $package_list
1854	do
1855
1856	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1857
1858	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1859	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1860	# LIEFERT
1861	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1862
1863
1864	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1865	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1866	for source_list_name in $package_source_list
1867	do
1868	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1869	then
1870
1871	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1872	ending=`echo $source_list_name \| cut -f2 -d.`
1873	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1874	then
1875	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1876	source_list="$source_list $source_list_name"
1877	fi
1878	fi
1879	done
1880	done
1881
1882	cd - > /dev/null
1883	fi
1884
1885
1886	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1887	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1888	# if [[ "$restart_run" != true ]]
1889	# then
1890	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1891	# if [[ ! -f $makefile ]]
1892	# then
1893	# printf "\n +++ file \"$makefile\" does not exist"
1894	# locat=make; exit
1895	# else
1896	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1897	# fi
1898	# fi
1899
1900	fi # do_compile=true
1901
1902
1903	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1904	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1905	if [[ $do_compile = true ]]
1906	then
1907
1908	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1909	# ZUSAMMENSETZEN
1910	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1911	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1912	then
1913	cpp_options="${cpp_options},-D__ibm=__ibm"
1914	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1915	then
1916	cpp_options="$cpp_options -D__nec"
1917	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1918	then
1919	cpp_options="$cpp_options -D__lc"
1920	else
1921	cpp_options="$cpp_options -D__$localhost"
1922	fi
1923
1924	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1925	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1926	then
1927	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1928	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1929	else
1930	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1931	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1932	fi
1933
1934	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1935	if [[ -n $package_list ]]
1936	then
1937	for package in $package_list
1938	do
1939	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1940	then
1941	if [[ $package != "dvrp_graphics+1PE" ]]
1942	then
1943	cpp_options="${cpp_options},-D__$package=__$package"
1944	else
1945	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1946	export use_seperate_pe_for_dvrp_output=true
1947	fi
1948	else
1949	if [[ $package != "dvrp_graphics+1PE" ]]
1950	then
1951	cpp_options="$cpp_options -D__$package"
1952	else
1953	cpp_options="$cpp_options -D__dvrp_graphics"
1954	export use_seperate_pe_for_dvrp_output=true
1955	fi
1956	fi
1957	done
1958	fi
1959
1960	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1961	if [[ -n $cpp_opts ]]
1962	then
1963	for popts in $cpp_opts
1964	do
1965	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1966	then
1967	cpp_options="${cpp_options},-D__$popts=__$popts"
1968	else
1969	cpp_options="$cpp_options -D__$popts"
1970	fi
1971	done
1972	fi
1973
1974	else
1975
1976
1977	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1978	if [[ $do_remote = false ]]
1979	then
1980	if [[ ! -f $executable ]]
1981	then
1982	printf "\n +++ executable file: $executable"
1983	printf "\n does not exist"
1984	locat=executable; exit
1985	fi
1986	fi
1987	fi
1988
1989
1990	# JOBMODUS FESTSTELLEN
1991	if [[ "$ENVIRONMENT" = BATCH ]]
1992	then
1993	jobmo=BATCH
1994	else
1995	jobmo=INTERACTIVE
1996	fi
1997
1998
1999	# no interactive runs on lctit
2000	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
2001	then
2002	printf "\n +++ no interactive runs allowed on host \"$host\" "
2003	printf "\n please submit batch job using mrun option \"-b\" \n"
2004	locat=normal; exit
2005	fi
2006
2007
2008	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
2009	# DURCH BENUTZER ANDERWEITIG VEREINBART
2010	if [[ "$compiler_name" = "" ]]
2011	then
2012
2013	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
2014	locat=compiler_name; exit
2015
2016	fi
2017
2018
2019	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
2020	[[ $localhost = necriam ]] && compiler_name=mpif90
2021
2022
2023
2024	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
2025	kennung=$RANDOM
2026	if [[ "$tmp_user_catalog" = "" ]]
2027	then
2028	if [[ $localhost = ibmh ]]
2029	then
2030	tmp_user_catalog=$SCRATCH
2031	elif [[ $localhost = nech ]]
2032	then
2033	tmp_user_catalog=$WRKSHR
2034	else
2035	tmp_user_catalog=/tmp
2036	fi
2037	fi
2038	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
2039
2040
2041	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
2042	# BESTIMMEN
2043	if [[ "$tmp_data_catalog" = "" ]]
2044	then
2045	if [[ $localhost = nech ]]
2046	then
2047	tmp_data_catalog=$WRKSHR/mrun_restart_data
2048	else
2049	tmp_data_catalog=/tmp/mrun_restart_data
2050	fi
2051	fi
2052
2053
2054	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
2055	# ERSETZEN
2056	if [[ $do_remote = false && $do_compile = true ]]
2057	then
2058	eval fopts=\"$fopts\"
2059	eval lopts=\"$lopts\"
2060	fi
2061
2062
2063
2064	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
2065	fopts="$fopts $netcdf_inc $dvr_inc"
2066	lopts="$lopts $netcdf_lib $dvr_lib"
2067	ROPTS="$ropts"
2068	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxe6 \|\| $host = lcxt5m \|\| $host = lck \|\| $host = lckordi) && -n $numprocs ]]
2069	then
2070	XOPT="-X $numprocs"
2071	fi
2072
2073
2074
2075	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
2076	# GRAMM BENOETIGT
2077	done=false
2078	while [[ $done = false ]]
2079	do
2080	cputime=$cpumax
2081	if (( $cputime == 0 ))
2082	then
2083	if [[ $do_batch = true ]]
2084	then
2085	printf "\n +++ cpu-time is undefined"
2086	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
2087	printf "\n >>> "
2088	read cputime 1>/dev/null 2>&1
2089	else
2090	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
2091	fi
2092	else
2093	done=true
2094	fi
2095	cpumax=$cputime
2096	done
2097
2098	(( minuten = cputime / 60 ))
2099	(( sekunden = cputime - minuten * 60 ))
2100
2101
2102	# PRUEFEN DER KERNSPEICHERANFORDERUNG
2103	if [[ $do_batch = true ]]
2104	then
2105	done=false
2106	while [[ $done = false ]]
2107	do
2108	if (( memory == 0 ))
2109	then
2110	printf "\n +++ memory demand is undefined"
2111	printf "\n >>> Please type memory in MByte per process as INTEGER:"
2112	printf "\n >>> "
2113	read memory 1>/dev/null 2>&1
2114	else
2115	done=true
2116	fi
2117	done
2118	fi
2119
2120
2121	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
2122	if [[ $do_remote = true && -z $remote_username ]]
2123	then
2124	while [[ -z $remote_username ]]
2125	do
2126	printf "\n +++ username on remote host \"$host\" is undefined"
2127	printf "\n >>> Please type username:"
2128	printf "\n >>> "
2129	read remote_username
2130	done
2131	mc="$mc -u$remote_username"
2132	fi
2133
2134	# CHECK FOR INITIAL COMMANDS AFTER LOGIN
2135	if [[ "$login_init_cmd" != "" ]]
2136	then
2137	export init_cmds="${login_init_cmd};"
2138	fi
2139
2140
2141	# set module load command and export for subjob
2142	if [[ "$modules" != "" ]]
2143	then
2144	if [[ $host = lctit ]]
2145	then
2146	export module_calls=". $modules"
2147	else
2148	export module_calls="module load ${modules};"
2149	fi
2150	fi
2151
2152	# bugfix for wrong netcdf module and for netCDF4 usage in case of mpt
2153	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2154	then
2155	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
2156	then
2157	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
2158	fi
2159	# if [[ $(echo $module_calls \| grep -c mpt) != 0 ]]
2160	# then
2161	# export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/sgi/mpt/2011-02-07/lib:\$LD_LIBRARY_PATH;"
2162	# echo "*** module_calls = $module_calls"
2163	# fi
2164	fi
2165
2166
2167	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
2168	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2169	then
2170	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
2171	then
2172	mpilib=mpt
2173	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
2174	then
2175	mpilib=mvapich
2176	elif [[ $(echo $modules \| grep -c impi ) != 0 ]]
2177	then
2178	mpilib=impi
2179	fi
2180	fi
2181
2182
2183
2184	###########################################################################
2185	# HEADER-AUSGABE
2186	###########################################################################
2187
2188
2189	calltime=$(date)
2190	printf "\n"
2191	# [[ $silent = false ]] && clear
2192	printf "#--------------------------------------------------------------# \n"
2193	printf "\| $version$calltime \| \n"
2194	printf "\| \| \n"
2195	spalte1="called on:"; spalte2=$localhost_realname
2196	printf "\| $spalte1$spalte2 \| \n"
2197	if [[ $local_compile = false ]]
2198	then
2199	if [[ $do_remote = true ]]
2200	then
2201	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2202	else
2203	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2204	fi
2205	else
2206	spalte1="compiling test only!"; spalte2=""
2207	fi
2208	printf "\| $spalte1$spalte2 \| \n"
2209	if [[ -n $numprocs ]]
2210	then
2211	spalte1="number of PEs:"; spalte2=$numprocs
2212	printf "\| $spalte1$spalte2 \| \n"
2213	fi
2214	if [[ -n $tasks_per_node ]]
2215	then
2216	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2217	printf "\| $spalte1$spalte2 \| \n"
2218	fi
2219	if [[ $maximum_parallel_io_streams != $numprocs ]]
2220	then
2221	spalte1="max par io streams:"; spalte2="$maximum_parallel_io_streams"
2222	printf "\| $spalte1$spalte2 \| \n"
2223	fi
2224	if [[ $use_openmp = true ]]
2225	then
2226	spalte1="threads per task:"; spalte2="$threads_per_task"
2227	printf "\| $spalte1$spalte2 \| \n"
2228	fi
2229	printf "\| \| \n"
2230	if [[ $do_compile = true ]]
2231	then
2232	if [[ "$mopts" != "" ]]
2233	then
2234	spalte1="make options:"; spalte2=$mopts
2235	printf "\| $spalte1$spalte2 \| \n"
2236	zeile=$(echo "$mopts" \| cut -c41-)
2237	while [[ "$zeile" != "" ]]
2238	do
2239	spalte1=""
2240	spalte2=$zeile
2241	printf "\| $spalte1$spalte2 \| \n"
2242	zeile=$(echo "$zeile" \| cut -c41-)
2243	done
2244	fi
2245
2246	spalte1="cpp directives:"; spalte2=$cpp_options
2247	printf "\| $spalte1$spalte2 \| \n"
2248	zeile=$(echo "$cpp_options" \| cut -c41-)
2249	while [[ "$zeile" != "" ]]
2250	do
2251	spalte1=""
2252	spalte2=$zeile
2253	printf "\| $spalte1$spalte2 \| \n"
2254	zeile=$(echo "$zeile" \| cut -c41-)
2255	done
2256
2257	spalte1="compiler options:"; spalte2="$fopts"
2258	printf "\| $spalte1$spalte2 \| \n"
2259	zeile=$(echo "$fopts" \| cut -c41-)
2260	while [[ "$zeile" != "" ]]
2261	do
2262	spalte1=""
2263	spalte2=$zeile
2264	printf "\| $spalte1$spalte2 \| \n"
2265	zeile=$(echo "$zeile" \| cut -c41-)
2266	done
2267
2268	spalte1="linker options:"; spalte2=$lopts
2269	printf "\| $spalte1$spalte2 \| \n"
2270	zeile=$(echo "$lopts" \| cut -c41-)
2271	while [[ "$zeile" != "" ]]
2272	do
2273	spalte1=""
2274	spalte2=$zeile
2275	printf "\| $spalte1$spalte2 \| \n"
2276	zeile=$(echo "$zeile" \| cut -c41-)
2277	done
2278
2279	spalte1="modules to be load:"; spalte2=$modules
2280	printf "\| $spalte1$spalte2 \| \n"
2281	zeile=$(echo "$modules" \| cut -c41-)
2282	while [[ "$zeile" != "" ]]
2283	do
2284	spalte1=""
2285	spalte2=$zeile
2286	printf "\| $spalte1$spalte2 \| \n"
2287	zeile=$(echo "$zeile" \| cut -c41-)
2288	done
2289
2290	spalte1="main program":; spalte2=$mainprog
2291	printf "\| $spalte1$spalte2 \| \n"
2292	else
2293	spalte1=executable:; spalte2=$executable
2294	printf "\| $spalte1$spalte2 \| \n"
2295	fi
2296	printf "\| \| \n"
2297	spalte1="base name of files":; spalte2=$fname
2298	printf "\| $spalte1$spalte2 \| \n"
2299	if [[ $fname != $afname ]]
2300	then
2301	spalte1="base name of input files":; spalte2=$afname
2302	printf "\| $spalte1$spalte2 \| \n"
2303	fi
2304	spalte1="INPUT control list":; spalte2=$input_list
2305	printf "\| $spalte1$spalte2 \| \n"
2306	spalte1="OUTPUT control list":; spalte2=$output_list
2307	printf "\| $spalte1$spalte2 \| \n"
2308
2309	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2310	then
2311	spalte1="memory demand / PE":; spalte2="$memory MB"
2312	printf "\| $spalte1$spalte2 \| \n"
2313	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2314	printf "\| $spalte1$spalte2 \| \n"
2315	fi
2316
2317	if [[ $do_compile = true ]]
2318	then
2319	printf "\| \| \n"
2320	printf "\| Files to be compiled: \| \n"
2321	zeile=$source_list
2322	while [[ "$zeile" != "" ]]
2323	do
2324	spalte3=$zeile
2325	printf "\| $spalte3 \| \n"
2326	zeile=$(echo "$zeile" \| cut -c61-)
2327	done
2328	fi
2329	printf "#--------------------------------------------------------------#"
2330
2331
2332
2333	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2334	if [[ $do_trace = true ]]
2335	then
2336	(( i = 0 ))
2337	while (( i < iin ))
2338	do
2339	(( i = i + 1 ))
2340	if (( i == 1 ))
2341	then
2342	printf "\n\n >>> INPUT-file assignments:\n"
2343	fi
2344	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2345	done
2346	(( i = 0 ))
2347	while (( i < iout ))
2348	do
2349	(( i = i + 1 ))
2350	if (( i == 1 ))
2351	then
2352	printf "\n\n >>> OUTPUT-file assignments:\n"
2353	fi
2354	printf "\n ${localout[$i]} : ${pathout[$i]}"
2355	done
2356	(( i = 0 ))
2357	while (( i < iic ))
2358	do
2359	(( i = i + 1 ))
2360	if (( i == 1 ))
2361	then
2362	printf "\n\n >>> INPUT-commands:\n"
2363	fi
2364	printf "\n ${in_command[$i]}"
2365	done
2366	(( i = 0 ))
2367	while (( i < ioc ))
2368	do
2369	(( i = i + 1 ))
2370	if (( i == 1 ))
2371	then
2372	printf "\n\n >>> OUTPUT-commands:\n"
2373	fi
2374	printf "\n ${out_command[$i]}"
2375	done
2376	fi
2377
2378
2379	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2380	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2381	then
2382	antwort=dummy
2383	printf "\n\n"
2384	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2385	do
2386	printf " >>> everything o.k. (y/n) ? "
2387	read antwort
2388	done
2389	if [[ $antwort = n \|\| $antwort = N ]]
2390	then
2391	locat=user_abort; (( iec = 0 )); exit
2392	fi
2393	if [[ $do_batch = true ]]
2394	then
2395	printf " >>> batch-job will be created and submitted"
2396	else
2397	if [[ $local_compile = false ]]
2398	then
2399	printf " >>> MRUN will now continue to execute on this machine"
2400	else
2401	printf " >>> a test compilation will now be carried out on this machine"
2402	fi
2403	fi
2404	fi
2405
2406	#### PERFORM PARAMETER FILE CHECK (COUPLED RUNS ARE NOT SUPPORTED YET)
2407
2408	#DEFINE VARIABLES FOR FREQUENTLY USED DIRECTORIES
2409	check_depository="${working_directory}/trunk/UTIL"
2410	check_sources="${working_directory}/tmp_check_namelist_files"
2411	skip_check=false
2412
2413	#CHECK IF NAMELIST_FILE_CHECK HAS BEEN COMPILED SUCCESSFULLY
2414	if [[ ! -f $check_depository/check_namelist_files.tar ]]
2415	then
2416	skip_check=true
2417	reason="run on remote host or parameter file check has not been compiled."
2418	fi
2419	if [[ ! -f $PALM_BIN/check_namelist_files.x ]]
2420	then
2421	skip_check=true
2422	reason="parameter file check has not been compiled."
2423	fi
2424
2425	#CHECK FOR PARALLEL RUN; OTHERWISE SKIP CHECK
2426	if [[ "$cond1" != "parallel" && "$cond2" != "parallel" ]]
2427	then
2428	skip_check=true
2429	reason="serial run."
2430	fi
2431
2432	#ONLY PERFORM CHECK IF -z OPTION IS NOT SET, NO RESTART RUN IS CARRIED OUT AND IF THE EXECUTION HOST IS THE LOCAL HOST
2433	if [[ $check_namelist_files == false ]]
2434	then
2435	skip_check=true
2436	reason="-z option set."
2437	fi
2438
2439	if [[ $fromhost != $localhost ]]
2440	then
2441	skip_check=true
2442	reason="submitting host is local host."
2443	fi
2444
2445	if [[ $run_coupled_model == true ]]
2446	then
2447	skip_check=true
2448	reason="coupled run."
2449	fi
2450
2451	if [[ $restart_run == true ]]
2452	then
2453	skip_check=true
2454	reason="restart run."
2455
2456	fi
2457
2458	#SKIP CHECK IN CASE OF RESTART RUN: CHECK WHETHER THE LAST CHAR IS "f" IN PARIN
2459	((last_char = `echo $filename_input \| wc -c` - 1))
2460	last_char=`echo $filename_input \|cut -c$last_char`
2461	if [[ "$last_char" == "f" ]]
2462	then
2463	skip_check=true
2464	reason="restart run.)"
2465	fi
2466
2467	if [[ $skip_check == false ]]
2468	then
2469
2470	tmp_check=${working_directory}/tmp_check
2471
2472	# GET TOPOGRAPHY PARAMETER FILE SUFFIX (USUALLY "_P3DF"). THIS FILE MIGHT IS
2473	# NOT NECESSARILY REQUIRED
2474	line=""
2475	found=false
2476	grep "TOPOGRAPHY_DATA" $config_file > $tmp_check
2477	while read line1
2478	do
2479	line="$line1"
2480	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2481	then
2482	topo_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2483	found=true
2484	fi
2485	done < $tmp_check
2486
2487	if [[ $found = false ]]
2488	then
2489	printf "\n +++ no TOPOGRAPHY list entry found in the configuration file."
2490	fi
2491
2492	rm -rf ${working_directory}/tmp_check
2493
2494	# CHECK IF THE A P3DF FILE MUST BE CHECKED
2495	for item in $input_list
2496	do
2497	if [[ "$item" == "restart" ]]
2498	then
2499	check_restart=1
2500	else
2501	check_restart=0
2502	fi
2503	done
2504
2505	# ERROR IF NO PARAMETER FILE WAS FOUND, OTHERWISE PROCEED
2506	if [[ (! -f $filename_input) && ( "$filename_input" != "") ]]
2507	then
2508	printf "\n\n +++ ERROR: parameter file ($filename_input) not found."
2509	locat=check_namelist; exit
2510	fi
2511
2512	# CHECK IF THE RESTART PARAMETER FILE EXISTS (IF NECESSARY)
2513	if [[ $check_restart == 1 ]]
2514	then
2515
2516
2517
2518	filenamef="${filename_input}f"
2519	if [[ ! -f $filenamef ]]
2520	then
2521	printf "\n\n +++ WARNING: restart parameter file ($filenamef) is missing."
2522	check_restart=0
2523	answer=dummy
2524	printf "\n\n"
2525
2526	if [[ $silent == false ]]
2527	then
2528	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2529	do
2530	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2531	read answer
2532	done
2533	if [[ $answer = a \|\| $answer = A ]]
2534	then
2535	printf "\n +++ Aborting...."
2536	locat=normal; exit
2537	fi
2538	fi
2539	else
2540	check_restart=1
2541	fi
2542	fi
2543
2544	# CREATE TEMPORARY SOURCES_FOR_CHECK PATH
2545	mkdir $check_sources
2546	cd $check_sources
2547
2548
2549	# CHECK FOR USER CODE, OTHERWISE USE THE PRECOMPILED CHECK_NAMELIST_FILES.X
2550	if [[ -d $add_source_path ]]
2551	then
2552	printf "\n\n *** copying files from $check_depository"
2553	cp $check_depository/check_namelist_files.tar ./
2554
2555	printf "\n\n *** untar of makefile and source files in $check_sources"
2556	tar -xf check_namelist_files.tar > /dev/null 2>&1
2557
2558	printf "\n\n *** adding user code."
2559	cp $add_source_path/* ./
2560	touch check_namelist_files.f90
2561
2562	# GET COMPILER OPTIONS AND PERFORM MAKE
2563	printf "\n\n *** compiling code if necessary...\n"
2564	copts_check="-cpp -D_parallel -D__check"
2565	make -f Makefile_check F90=$compiler_name_ser COPT="$copts_check"
2566
2567	# GET MAKE OUTPUT
2568	if [[ $? != 0 ]]
2569	then
2570	printf "\n +++ error during make."
2571	answer=dummy
2572	printf "\n\n"
2573	if [[ $silent == false ]]
2574	then
2575	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2576	do
2577	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2578	read answer
2579	done
2580	if [[ $answer = a \|\| $answer = A ]]
2581	then
2582	printf "\n +++ Aborting..."
2583	rm -rf $check_sources
2584	locat=normal; exit
2585	else
2586	skip_check=true
2587	fi
2588	else
2589	skip_check=true
2590	fi
2591	fi
2592	else
2593	cp $PALM_BIN/check_namelist_files.x ./
2594	fi
2595
2596	cp $filename_input ./PARIN
2597	if [[ $check_restart == 1 ]]
2598	then
2599	cp $filenamef ./PARINF
2600	fi
2601
2602	if [[ -f ${pathname}/${fname}${topo_suffix} && $skip_check == false ]]
2603	then
2604	printf "\n *** adding topography data"
2605	cp ${pathname}/${fname}${topo_suffix} ./TOPOGRAPHY_DATA
2606
2607	# IN CASE OF TOPOGRAPHY AND HIGH GRID POINT NUMBERS, THE STACK SIZE
2608	# MUST BE INCREASED. THIS IS DUE TO THE ARRAY nzb_local AND topo_height,
2609	# WHICH REQUIRE SUFFICIENT MEMORY
2610	ulimit -s unlimited
2611	fi
2612
2613	# CREATE ENVPAR FILE, WHICH IS NEEDED BY CHECK_NAMELIST_FILES.X
2614	cat > ENVPAR << %%END%%
2615	&envpar run_identifier = '$fname', host = '$host',
2616	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2617	maximum_parallel_io_streams = $maximum_parallel_io_streams,
2618	maximum_cpu_time_allowed = ${cpumax}.,
2619	revision = '$global_revision',
2620	local_dvrserver_running = $local_dvrserver_running /
2621
2622	%%END%%
2623
2624	# SAFETY CHECK: ONLY PROCEED IF THE PARAMETER CHECK PROGRAM WAS PROPERLY COMPILED
2625	if [[ ! -f check_namelist_files.x && $skip_check == false ]] then
2626	printf "\n +++ WARNING: check_namelist_files.x not found."
2627	answer=dummy
2628	printf "\n\n"
2629
2630	if [[ $silent == false ]]
2631	then
2632	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2633	do
2634	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2635	read answer
2636	done
2637	if [[ $answer = a \|\| $answer = A ]]
2638	then
2639	printf "\n +++ Aborting..."
2640	rm -rf $check_sources
2641	locat=normal; exit
2642	else
2643	printf "\n *** Skipping parameter file check."
2644
2645	fi
2646	fi
2647
2648	elif [[ $skip_check == false ]]
2649	then
2650	# STARTING THE PARAMETER FILE CHECK
2651	printf "\n\n *** starting parameter file check..."
2652
2653	# CHECKING THE P3D FILE
2654	printf "\n\n (1) checking $filename_input"
2655	echo "$numprocs 0 0" > VARIN
2656	errors=`./check_namelist_files.x < VARIN 2>&1`
2657
2658	check_error=false
2659	if [[ "$errors" == "" ]]
2660	then
2661	printf " --> o.k."
2662	else
2663	printf " --> failed."
2664	check_error=true
2665	printf "\n\n $errors"
2666	fi
2667
2668	# CHECKING THE PD3F FILE IF NECESSARY
2669	if [[ $check_restart == 1 && $check_error == false ]]
2670	then
2671	printf "\n\n (2) checking $filenamef"
2672
2673	# FIRST CHECK IF INITIALIZING_ACTIONS="READ_RESTART_DATA" IS SET IN &INIPAR LIST
2674	found=false
2675	cat PARINF\|while read line
2676	do
2677	line=$(echo $line\|sed 's/ //g')
2678	if [[ $line == "&inipar" ]]
2679	then
2680	start_search=true
2681	fi
2682
2683	if [[ $start_search == true ]]
2684	then
2685	if [[ $line == "initializing_actions='read_restart_data'" ]]
2686	then
2687	found=true
2688	break
2689	fi
2690	fi
2691
2692	if [[ $line == "/" ]]
2693	then
2694	start_search=false
2695	fi
2696
2697	done
2698
2699	if [[ $found = false ]]
2700	then
2701	printf "\n\n +++ ERROR: initializing_actions = 'read_restart_data' not found"
2702	printf "\n in &inipar list in $fname$p3df_suffix."
2703	rm -rf $check_sources
2704	locat=check_namelist; exit
2705	fi
2706
2707	# READ max_user_pr FROM FILES
2708	if [[ -f parin_for_check ]]
2709	then
2710	read max_pr_user < parin_for_check
2711	else
2712	max_user_pr=0
2713	fi
2714
2715	echo "$numprocs 1 $max_pr_user" > VARIN
2716	errors=`./check_namelist_files.x < VARIN 2>&1`
2717
2718	if [[ "$errors" == "" ]]
2719	then
2720	printf " --> o.k."
2721	else
2722	printf " --> failed."
2723	check_error=true
2724	printf "\n\n $errors"
2725	fi
2726	fi
2727
2728	# REPORT ERRORS AND CONTINUE/EXIT
2729	if [[ $check_error == true ]]
2730	then
2731	printf "\n +++ errors found in the parameter file!\n"
2732	answer=dummy
2733	printf "\n\n"
2734
2735	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2736	do
2737	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2738	read answer
2739	done
2740
2741	if [[ $answer = a \|\| $answer = A ]]
2742	then
2743	printf "\n +++ Aborting..."
2744	rm -rf $check_sources
2745	locat=normal; exit
2746	fi
2747	else
2748	printf "\n\n *** parameter file(s) seem(s) to be o.k.\n"
2749	fi
2750	rm -rf $check_sources
2751	fi
2752	else
2753	printf "\n\n +++ skipping parameter file check due to following reason: $reason"
2754	fi
2755
2756	# DELETE TEMPORARY DIRECTORY AND FINISH NAMELIST FILE CHECK
2757	rm -rf $check_sources
2758	cd $working_directory
2759
2760
2761	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2762	# CHENDE AKTIONEN DURCHGEFUEHRT
2763	if [[ $do_batch = false ]]
2764	then
2765
2766
2767	# TEMPORAEREN KATALOG ERZEUGEN
2768	mkdir -p $TEMPDIR
2769	chmod go+rx $TEMPDIR
2770	tmpcreate=true
2771
2772	# set striping on lustre file system
2773	# if [[ $localhost = lcsgih ]]
2774	# then
2775	# lfs setstripe -s 8192k -c 16 $TEMPDIR
2776	# lfs getstripe $TEMPDIR
2777	# fi
2778
2779
2780	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2781	# TEMPORAERES VERZEICHNIS KOPIEREN
2782	if [[ $do_compile = true ]]
2783	then
2784
2785	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2786	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2787	if [[ $localhost = nech ]]
2788	then
2789	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2790	if mkdir -p $TEMPDIR_COMPILE
2791	then
2792	printf "\n *** \"$TEMPDIR_COMPILE\" "
2793	printf "\n is generated as temporary directory for cross compiling\n"
2794	else
2795	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2796	printf "\n needed for cross compilation failed"
2797	locat=compile
2798	exit
2799	fi
2800	else
2801	TEMPDIR_COMPILE=$TEMPDIR
2802	fi
2803
2804
2805	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2806	line=""
2807	grep "%depository_path" $config_file > tmp_mrun
2808	while read line
2809	do
2810	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2811	then
2812	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2813	then
2814	global_depository_path=`echo $line \| cut -d" " -s -f2`
2815	fi
2816	fi
2817	done < tmp_mrun
2818
2819	line=""
2820	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2821	while read line
2822	do
2823	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2824	then
2825	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2826	then
2827	local_depository_path=`echo $line \| cut -d" " -s -f2`
2828	fi
2829	fi
2830	done < tmp_mrun
2831
2832	if [[ "$local_depository_path" = "" ]]
2833	then
2834	if [[ "$global_depository_path" != "" ]]
2835	then
2836	local_depository_path=$global_depository_path
2837	else
2838	printf "\n\n +++ no depository path found in configuration file"
2839	printf "\n for local host \"$localhost\" "
2840	printf "\n please set \"\%depository_path\" in configuration file\n"
2841	locat=config_file; exit
2842	fi
2843	fi
2844	eval local_depository_path=$local_depository_path
2845	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2846	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2847
2848
2849	basename=`print $mainprog \| cut -f1 -d"."`
2850	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2851	if [[ ! -f $make_depository ]]
2852	then
2853	printf "\n"
2854	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2855	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2856	else
2857	cp $make_depository $TEMPDIR_COMPILE
2858	cd $TEMPDIR_COMPILE
2859	tar -xf $make_depository > /dev/null 2>&1
2860	cd - > /dev/null
2861	fi
2862
2863	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2864
2865	else
2866
2867	cp $executable ${TEMPDIR}/a.out
2868
2869	fi
2870
2871
2872	# WECHSEL IN TEMPORAEREN KATALOG
2873	cd $TEMPDIR
2874	printf "\n *** changed to temporary directory: $TEMPDIR"
2875
2876
2877	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2878	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2879	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2880	# ERMITTELN
2881	(( i = 0 ))
2882	while (( i < iout ))
2883	do
2884	(( i = i + 1 ))
2885	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2886	then
2887	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2888	else
2889	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2890	fi
2891	done
2892
2893
2894	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2895	if [[ $do_compile = true ]]
2896	then
2897
2898
2899	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2900	printf "\n\n\n *** compilation starts \n$striche\n"
2901	printf " *** compilation with make using following options:\n"
2902	printf " make depository: $make_depository"
2903	if [[ "$mopts" != "" ]]
2904	then
2905	printf " make options: $mopts\n"
2906	fi
2907	printf " compilername: $compiler_name\n"
2908	printf " compiler options: $fopts\n"
2909	printf " preprocessor directives: $cpp_options \n"
2910	printf " linker options: $lopts \n"
2911	if [[ "$modules" != "" ]]
2912	then
2913	printf " modules to be load: $modules \n"
2914	fi
2915	printf " source code files: $source_list \n"
2916
2917	if [[ $localhost = nech ]]
2918	then
2919	# init_cmds was ". /SX/opt/etc/initsx.sh;"
2920	ssh 136.172.44.192 -l $usern "$init_cmds $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2921	cp $TEMPDIR_COMPILE/a.out .
2922	[[ $? != 0 ]] && compile_error=true
2923	rm -rf $TEMPDIR_COMPILE
2924	elif [[ $localhost = ibmh ]]
2925	then
2926	printf " compiler is called via ssh on \"plogin1\" \n"
2927	ssh plogin1 -l $usern "$init_cmds export PATH=/sw/ibm/xlf/13.1.0.8/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2928	[[ ! -f a.out ]] && compile_error=true
2929	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2930	elif [[ $localhost = lcsgib ]]
2931	then
2932	printf " compiler is called via ssh on \"bicegate0\" \n"
2933	ssh bicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2934	[[ ! -f a.out ]] && compile_error=true
2935	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2936	elif [[ $localhost = lcsgih ]]
2937	then
2938	printf " compiler is called via ssh on \"hicegate0\" \n"
2939	ssh hicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2940	[[ ! -f a.out ]] && compile_error=true
2941	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2942	elif [[ $localhost = lcflow ]]
2943	then
2944	printf " compiler is called via ssh on \"flow\" \n"
2945	ssh flow02.hpc.uni-oldenburg.de -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2946	[[ ! -f a.out ]] && compile_error=true
2947	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2948	else
2949	[[ "$init_cmds" != "" ]] && eval $init_cmds
2950	[[ "$module_calls" != "" ]] && eval $module_calls
2951	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2952
2953	fi
2954
2955	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2956	then
2957	printf "\n +++ error occured while compiling or linking"
2958	locat=compile
2959
2960	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
2961	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
2962	# then
2963	exit
2964	# else
2965	# locat=normal
2966	# fi
2967	else
2968	printf "$striche\n *** compilation finished \n"
2969	fi
2970	fi
2971
2972
2973	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2974	if [[ $local_compile = true ]]
2975	then
2976	cd $HOME
2977	rm -rf $TEMPDIR
2978	locat=local_compile; exit
2979	fi
2980
2981
2982	# BEREITSTELLEN DER INPUT-DATEIEN
2983	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2984	(( i = 0 ))
2985	while (( i < iin ))
2986	do
2987	(( i = i + 1 ))
2988	if (( i == 1 ))
2989	then
2990	printf "\n\n *** providing INPUT-files:\n$striche"
2991	fi
2992
2993
2994	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2995	if [[ "${transin[$i]}" = unavailable ]]
2996	then
2997	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2998	then
2999	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
3000	printf "\n is not available!"
3001	else
3002	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
3003	printf "\n is not available!"
3004	fi
3005	continue
3006	fi
3007
3008	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3009	files_for_pes=false; datentyp=file
3010	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
3011	then
3012	files_for_pes=true; datentyp=directory
3013	actionin[$i]=""
3014	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
3015	then
3016	actionin[$i]=""
3017	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
3018	then
3019	files_for_pes=true; datentyp=directory
3020	actionin[$i]="ar"
3021	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
3022	then
3023	actionin[$i]="ar"
3024	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
3025	then
3026	files_for_pes=true; datentyp=directory
3027	actionin[$i]="fl"
3028	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
3029	then
3030	actionin[$i]="fl"
3031	fi
3032
3033	if [[ $files_for_pes = true ]]
3034	then
3035	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
3036	else
3037	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
3038	fi
3039
3040	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
3041	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
3042	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
3043	# SERVER ZU HOLEN
3044	if [[ "${actionin[$i]}" = fl ]]
3045	then
3046	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
3047	if [[ $files_for_pes = false ]]
3048	then
3049	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
3050	then
3051	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
3052	got_tmp[$i]=true
3053	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
3054	then
3055	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
3056	printf "\n *** trying to use backup copy in \"$WORK\" "
3057	cp $WORK/${frelin[$i]} ${localin[$i]}
3058	else
3059	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
3060	printf "\n or \"$tmp_data_catalog\" does not exist!"
3061	printf "\n *** trying to get copy from archive"
3062	actionin[$i]=ar
3063	fi
3064	else
3065	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
3066	then
3067	mkdir ${localin[$i]}
3068	cd $tmp_data_catalog/${frelin[$i]}
3069	for file in $(ls *)
3070	do
3071	ln $file $TEMPDIR/${localin[$i]}
3072	done
3073	cd $TEMPDIR
3074	got_tmp[$i]=true
3075	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
3076	then
3077	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
3078	printf "\n *** trying to use backup copy in \"$WORK\" "
3079	cp -r $WORK/${frelin[$i]} ${localin[$i]}
3080	else
3081	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
3082	printf "\n or \"$tmp_data_catalog\" does not exist!"
3083	printf "\n *** trying to get copy from archive"
3084	actionin[$i]=ar
3085	fi
3086	fi
3087	fi
3088
3089
3090	# DATEI LIEGT AUF ARCHIV-SERVER
3091	if [[ "${actionin[$i]}" = ar ]]
3092	then
3093
3094	if [[ $files_for_pes = false ]]
3095	then
3096	printf "\n file will be restored from archive-system ($archive_system)!"
3097	else
3098	printf "\n directory will be restored from archive-system ($archive_system)!"
3099	fi
3100
3101	file_restored=false
3102
3103	if [[ $archive_system = asterix ]]
3104	then
3105	do_stagein=true
3106	(( stagein_anz = 0 ))
3107	while [[ $do_stagein = true ]]
3108	do
3109	if [[ $files_for_pes = false ]]
3110	then
3111	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
3112	else
3113	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
3114	fi
3115	cat STAGEIN_OUTPUT
3116	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
3117	then
3118	file_restored=true
3119	do_stagein=false
3120	else
3121	(( stagein_anz = stagein_anz + 1 ))
3122	if (( stagein_anz == 10 ))
3123	then
3124	printf "\n +++ stagein stoped after 10 tries"
3125	locat=stage
3126	exit
3127	fi
3128	printf "\n +++ restoring from archive failed, trying again:"
3129	sleep 900
3130	fi
3131	done
3132	elif [[ $archive_system = DMF ]]
3133	then
3134	if [[ $files_for_pes = false ]]
3135	then
3136	printf "\n +++ restoring of single files impossible with $archive_system !\n"
3137	locat=DMF
3138	exit
3139	else
3140	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
3141	cp -r $ARCHIVE/${frelin[$i]} $PWD
3142	file_restored=true
3143	fi
3144	elif [[ $archive_system = tivoli ]]
3145	then
3146	if [[ $files_for_pes = false ]]
3147	then
3148	if [[ $localhost = lcsgih ]]
3149	then
3150	ssh $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3151	else
3152	ssh $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3153	fi
3154	else
3155	(( inode = 0 ))
3156	while (( inode < nodes ))
3157	do
3158	if [[ $localhost = lcsgih ]]
3159	then
3160	ssh $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3161	else
3162	ssh $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3163	fi
3164	(( inode = inode + 1 ))
3165	done
3166	fi
3167	file_restored=true
3168	elif [[ $archive_system = ut ]]
3169	then
3170	if [[ $files_for_pes = false ]]
3171	then
3172	cp $UT/${frelin[$i]} .
3173	else
3174	(( inode = 0 ))
3175	while (( inode < nodes ))
3176	do
3177	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
3178	(( inode = inode + 1 ))
3179	done
3180	fi
3181	file_restored=true
3182	else
3183	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
3184	locat=rearchive
3185	exit
3186	fi
3187
3188	if [[ $file_restored = true ]]
3189	then
3190
3191	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
3192	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
3193	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
3194	if [[ $files_for_pes = false ]]
3195	then
3196	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
3197	else
3198	mkdir $tmp_data_catalog/${frelin[$i]}
3199	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
3200	fi
3201	got_tmp[$i]=true
3202
3203	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
3204	mv ${frelin[$i]} ${localin[$i]}
3205
3206	fi
3207	fi
3208
3209
3210	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
3211	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
3212	then
3213
3214	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
3215	then
3216
3217	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
3218	printf "\n file will be provided for $numprocs processors"
3219	mkdir ${localin[$i]}
3220	ival=$numprocs
3221	(( ii = 0 ))
3222	while (( ii <= ival-1 ))
3223	do
3224	if (( ii < 10 ))
3225	then
3226	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
3227	elif (( ii < 100 ))
3228	then
3229	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
3230	elif (( ii < 1000 ))
3231	then
3232	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
3233	else
3234	cp ${absnamein[$i]} ${localin[$i]}/_$ii
3235	fi
3236	(( ii = ii + 1 ))
3237	done
3238
3239	else
3240
3241	if [[ $files_for_pes = true ]]
3242	then
3243
3244	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
3245	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
3246	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
3247	# PER MOVE UMBENANNT WERDEN
3248	printf "\n providing $numprocs files for the respective processors"
3249	mkdir ${localin[$i]}
3250	if [[ $link_local_input = true ]]
3251	then
3252	printf " using ln -f\n"
3253	cd ${absnamein[$i]}
3254	for file in $(ls *)
3255	do
3256	ln -f $file ${localin[$i]}
3257	done
3258	cd $TEMPDIR
3259	fi
3260	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
3261	if [[ ! -f "${localin[$i]}/_0000" ]]
3262	then
3263	if [[ $link_local_input = true ]]
3264	then
3265	printf " ln failed for .../_0000, using cp...\n"
3266	fi
3267	cp -r ${absnamein[$i]}/* ${localin[$i]}
3268	fi
3269
3270	else
3271	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
3272	if [[ $link_local_input = true ]]
3273	then
3274	printf " using ln -f\n"
3275	ln -f ${absnamein[$i]} ${localin[$i]}
3276	fi
3277	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
3278	if [[ ! -f "${localin[$i]}" ]]
3279	then
3280	if [[ $link_local_input = true ]]
3281	then
3282	printf " ln failed, using cp...\n"
3283	fi
3284	cp ${absnamein[$i]} ${localin[$i]}
3285	fi
3286	fi
3287	fi
3288	fi
3289
3290	done
3291	if (( i != 0 ))
3292	then
3293	printf "\n$striche\n *** all INPUT-files provided \n"
3294	fi
3295
3296
3297	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
3298	(( i = 0 ))
3299	while (( i < iic ))
3300	do
3301	(( i = i + 1 ))
3302	if (( i == 1 ))
3303	then
3304	printf "\n\n *** execution of INPUT-commands:\n$striche"
3305	fi
3306	printf "\n >>> ${in_command[$i]}"
3307	eval ${in_command[$i]}
3308	if (( i == iic ))
3309	then
3310	printf "\n$striche\n"
3311	fi
3312	done
3313
3314
3315	# VERBLEIBENDE CPU-ZEIT BERECHNEN
3316	cpurest=${cpumax}.
3317
3318
3319	# START DVR STREAMING SERVER
3320	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3321	then
3322	if [[ "$dvr_server" != "" ]]
3323	then
3324
3325	printf "\n\n *** preparing the dvr streaming server configuration file"
3326
3327	# Check, if a dvr server is already running
3328	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
3329	if [[ "$running_dvrserver_id" != "" ]]
3330	then
3331
3332	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
3333	printf "\n This server is used instead starting a new one!"
3334	printf "\n If required, script \"process_dvr_output\" has to be run manually."
3335
3336	else
3337
3338	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
3339	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
3340	then
3341	cp ${PALM_BIN}/.dvrserver.config .
3342
3343	# Entering the BASEDIR, UID and GID into this file
3344	user_id=`id -u`
3345	group_id=`id -g`
3346	# & is needed as seperator, because TEMPDIR contains /
3347	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
3348	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
3349	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
3350	mv .dvrserver.3 .dvrserver.config
3351	rm .dvrserver.1 .dvrserver.2
3352
3353	# Start dvr server in background, get his id and print on terminal
3354	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
3355	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
3356	printf "\n *** streaming server with id=$dvrserver_id is started in background"
3357	local_dvrserver_running=.TRUE.
3358	else
3359	printf "\n +++ missing file \".dvrserver.config\" in directory:"
3360	printf "\n \"$PALM_BIN\" "
3361	locat=dvr
3362	exit
3363	fi
3364
3365	fi
3366
3367	else
3368	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
3369	fi
3370	fi
3371
3372
3373	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
3374	# LESEN VON PALM)
3375	cat > ENVPAR << %%END%%
3376	&envpar run_identifier = '$fname', host = '$localhost',
3377	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
3378	maximum_parallel_io_streams = $maximum_parallel_io_streams,
3379	maximum_cpu_time_allowed = ${cpumax}.,
3380	revision = '$global_revision',
3381	local_dvrserver_running = $local_dvrserver_running /
3382
3383	%%END%%
3384
3385
3386	# PROGRAMMSTART
3387	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
3388	PATH=$PATH:$TEMPDIR
3389
3390	# MPI debug option (argument checking, slows down execution due to increased latency)
3391	if [[ "$mpi_debug" = true ]]
3392	then
3393	export MPI_CHECK_ARGS=1
3394	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
3395	fi
3396
3397	if [[ "$totalview" = true ]]
3398	then
3399	printf "\n *** totalview debugger will be used"
3400	tv_opt="-tv"
3401	else
3402	tv_opt=""
3403	fi
3404
3405	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
3406	then
3407	if [[ "$ENVIRONMENT" = BATCH ]]
3408	then
3409	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
3410	then
3411	printf "\n +++ debug is allowed in interactive mode only"
3412	locat=debug
3413	exit
3414	fi
3415	fi
3416	if [[ $localhost = decalpha ]]
3417	then
3418	dxladebug a.out
3419	elif [[ $localhost = ibmh ]]
3420	then
3421
3422	# SETUP THE IBM MPI ENVIRONMENT
3423	export MP_SHARED_MEMORY=yes
3424	export AIXTHREADS_SCOPE=S
3425	export OMP_NUM_THREADS=$threads_per_task
3426	export AUTHSTATE=files
3427	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3428
3429	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
3430	export MP_ADAPTER_USE=shared
3431	export MP_CPU_USE=multiple
3432	export MP_TIMEOUT=1200
3433
3434	unset MP_TASK_AFFINITY
3435
3436	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
3437	#(( ii = 1 ))
3438	#while (( ii <= $numprocs ))
3439	#do
3440	# echo $localhost_realname >> hostfile
3441	# (( ii = ii + 1 ))
3442	#done
3443	#export MP_HOSTFILE=hostfile
3444
3445	if [[ "$LOADLBATCH" = yes ]]
3446	then
3447	totalview poe a.out $ROPTS
3448	else
3449	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3450	export TVDSVRLAUNCHCMD=ssh
3451	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3452	fi
3453	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
3454	then
3455	# CURRENTLY NO DEBUGGER ON LCSGI
3456	if [[ $run_coupled_model = true ]]
3457	then
3458	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
3459	locat=debug
3460	exit
3461	else
3462	echo "no_coupling" > runfile_atmos
3463	fi
3464	(( ii = $numprocs / $threads_per_task ))
3465	export OMP_NUM_THREADS=$threads_per_task
3466	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3467	if [[ $threads_per_task != 1 ]]
3468	then
3469	printf "\n threads per task: $threads_per_task"
3470	fi
3471	printf "\n\n"
3472	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3473	then
3474	# export MPI_LAUNCH_TIMEOUT=360
3475	if [[ "$totalview" = true ]]
3476	then
3477	printf "\n running totalview debugger"
3478	mpiexec_mpt $tv_opt -n $ii ./a.out $ROPTS < runfile_atmos
3479	else
3480	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3481	fi
3482	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3483	then
3484	# ulimit -s 300000 # A too large stack size causes problems
3485	# export MV2_NUM_PORTS=2
3486	# export MV2_CPU_MAPPING=0:1:2:3
3487	if [[ "$totalview" = true ]]
3488	then
3489	printf "\n running totalview debugger"
3490	mpiexec $tv_opt ./a.out $ROPTS < runfile_atmos
3491	else
3492	mpiexec ./a.out $ROPTS < runfile_atmos
3493	fi
3494	fi
3495	else
3496	printf "\n +++ no debug available on \"$localhost\" "
3497	printf "\n or not implemented in mrun so far"
3498	locat=debug
3499	exit
3500	fi
3501
3502	# end debug mode
3503	else
3504
3505	# normal execution
3506	if [[ -n $numprocs ]]
3507	then
3508	# RUNNING THE PROGRAM ON PARALLEL MACHINES
3509	if [[ $(echo $host \| cut -c1-3) = ibm ]]
3510	then
3511	# SETUP THE IBM MPI ENVIRONMENT
3512	if [[ $host != ibmh && $host != ibmkisti ]]
3513	then
3514	export MP_SHARED_MEMORY=yes
3515	export AIXTHREAD_SCOPE=S
3516	export OMP_NUM_THREADS=$threads_per_task
3517	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
3518	export AUTHSTATE=files
3519	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3520	# export MP_PRINTENV=yes
3521
3522	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3523	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3524	export MP_WAIT_MODE=poll
3525	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3526	fi
3527
3528	if [[ $host = ibmkisti ]]
3529	then
3530	export LANG=en_US
3531	export MP_SHARED_MEMORY=yes
3532	if [[ $threads_per_task = 1 ]]
3533	then
3534	export MP_SINGLE_THREAD=yes
3535	export MEMORY_AFFINITY=MCM
3536	else
3537	export OMP_NUM_THREADS=$threads_per_task
3538	fi
3539	fi
3540
3541	if [[ "$LOADLBATCH" = yes ]]
3542	then
3543	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3544	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3545	then
3546	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3547	else
3548	if [[ $run_coupled_model = false ]]
3549	then
3550	if [[ "$ocean_file_appendix" = true ]]
3551	then
3552	echo "precursor_ocean" > runfile_atmos
3553	else
3554	echo "precursor_atmos" > runfile_atmos
3555	fi
3556	else
3557	(( iia = $numprocs_atmos / $threads_per_task ))
3558	(( iio = $numprocs_ocean / $threads_per_task ))
3559	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3560	printf "\n using $coupled_mode coupling"
3561	printf "\n\n"
3562	echo "coupled_run $iia $iio" > runfile_atmos
3563	fi
3564	poe ./a.out $ROPTS < runfile_atmos
3565	fi
3566	else
3567	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
3568	then
3569	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3570	elif [[ $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibmy ]]
3571	then
3572	if [[ -f $hostfile ]]
3573	then
3574	cp $hostfile hostfile
3575	else
3576	(( ii = 1 ))
3577	while (( ii <= $numprocs ))
3578	do
3579	echo $localhost_realname >> hostfile
3580	(( ii = ii + 1 ))
3581	done
3582	fi
3583	export MP_HOSTFILE=hostfile
3584	if [[ $run_coupled_model = false ]]
3585	then
3586	if [[ "$ocean_file_appendix" = true ]]
3587	then
3588	echo "precursor_ocean" > runfile_atmos
3589	else
3590	echo "precursor_atmos" > runfile_atmos
3591	fi
3592	else
3593	(( iia = $numprocs_atmos / $threads_per_task ))
3594	(( iio = $numprocs_ocean / $threads_per_task ))
3595	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3596	printf "\n using $coupled_mode coupling"
3597	printf "\n\n"
3598	echo "coupled_run $iia $iio" > runfile_atmos
3599	fi
3600	if [[ $localhost = ibmy ]]
3601	then
3602	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3603	else
3604	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
3605	fi
3606
3607	else
3608	if [[ "$host_file" = "" ]]
3609	then
3610	printf "\n +++ no hostfile given in configuration file"
3611	locat=config_file
3612	exit
3613	else
3614	eval host_file=$host_file
3615	fi
3616	export MP_HOSTFILE=$host_file
3617	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3618	fi
3619	fi
3620	elif [[ $host = nech \|\| $host = necriam ]]
3621	then
3622	(( ii = nodes ))
3623	if [[ $ii = 1 ]]
3624	then
3625	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3626	export MPIPROGINF=YES
3627	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3628	echo "*** execution on single node with mpirun"
3629	mpirun -np $numprocs ./a.out $ROPTS
3630	else
3631	(( i = 0 ))
3632	while (( i < ii ))
3633	do
3634	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3635	(( i = i + 1 ))
3636	done
3637
3638	echo "#!/bin/sh" > mpi_exec_shell
3639	echo " " >> mpi_exec_shell
3640	echo "set -u" >> mpi_exec_shell
3641	echo "F_ERRCNT=0" >> mpi_exec_shell
3642	echo "MPIPROGINV=YES" >> mpi_exec_shell
3643	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3644	echo "cpurest=$cpurest" >> mpi_exec_shell
3645	echo "fname=$fname" >> mpi_exec_shell
3646	echo "localhost=$localhost" >> mpi_exec_shell
3647	echo "return_addres=$return_addres" >> mpi_exec_shell
3648	echo "return_username=$return_username" >> mpi_exec_shell
3649	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3650	echo "write_binary=$write_binary" >> mpi_exec_shell
3651	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3652	echo " " >> mpi_exec_shell
3653	echo "export F_ERRCNT" >> mpi_exec_shell
3654	echo "export MPIPROGINV" >> mpi_exec_shell
3655	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3656	echo "export cpurest" >> mpi_exec_shell
3657	echo "export fname" >> mpi_exec_shell
3658	echo "export localhost" >> mpi_exec_shell
3659	echo "export return_addres" >> mpi_exec_shell
3660	echo "export return_username" >> mpi_exec_shell
3661	echo "export tasks_per_node" >> mpi_exec_shell
3662	echo "export write_binary" >> mpi_exec_shell
3663	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3664	echo " " >> mpi_exec_shell
3665	echo "exec ./a.out" >> mpi_exec_shell
3666
3667	chmod u+x mpi_exec_shell
3668	export MPIPROGINF=YES
3669	mpirun -f multinode_config &
3670	wait
3671
3672	fi
3673	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
3674	then
3675
3676	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3677	# DOES NOT EXIST
3678	if [[ $host != lcsgih && $host != lcsgib ]]
3679	then
3680	if [[ -f $hostfile ]]
3681	then
3682	cp $hostfile hostfile
3683	(( ii = $numprocs / $threads_per_task ))
3684	else
3685	(( ii = 1 ))
3686	while (( ii <= $numprocs / $threads_per_task ))
3687	do
3688	echo $localhost_realname >> hostfile
3689	(( ii = ii + 1 ))
3690	done
3691	fi
3692	eval zeile=\"`head -n $ii hostfile`\"
3693	printf "\n *** running on: $zeile"
3694	fi
3695
3696	(( ii = $numprocs / $threads_per_task ))
3697	export OMP_NUM_THREADS=$threads_per_task
3698	# echo "*** OMP_NUM_THREADS=$OMP_NUM_THREADS"
3699	if [[ $threads_per_task != 1 ]]
3700	then
3701	# increase stack size to unlimited, because large runs
3702	# may abort otherwise
3703	ulimit -Ss unlimited
3704	printf "\n threads per task: $threads_per_task stacksize: unlimited"
3705	fi
3706	if [[ $run_coupled_model = false ]]
3707	then
3708	if [[ "$ocean_file_appendix" = true ]]
3709	then
3710	echo "precursor_ocean" > runfile_atmos
3711	else
3712	echo "precursor_atmos" > runfile_atmos
3713	fi
3714	printf "\n\n"
3715	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3716	then
3717	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3718	then
3719	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3720	# export MPI_DSM_DISTRIBUTE=1
3721	# MPI_DSM_CPULIST: pin MPI processes to cores
3722	if [[ $use_openmp = false ]]
3723	then
3724	if [[ "$sgi_feature" = ice2 ]]
3725	then
3726	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
3727	else
3728	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3729	fi
3730	else
3731	unset MPI_DSM_CPULIST
3732	fi
3733	# MPI_IB_RAILS: use both IB rails on ICE2
3734	export MPI_BUFS_PER_HOST=512
3735	export MPI_IB_RAILS=2
3736	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3737	export MPI_CONNECTIONS_THRESHOLD=8192
3738	# echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
3739	export MPI_TYPE_DEPTH=20
3740	# echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
3741	export MPI_GROUP_MAX=64
3742	# echo "*** MPI_GROUP_MAX=$MPI_GROUP_MAX"
3743	if [[ $use_openmp = true ]]
3744	then
3745	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3746	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3747	else
3748	mpiexec_mpt -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3749	fi
3750
3751	# next is test for openmp usage
3752	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3753	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
3754	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3755	then
3756	export MV2_NUM_PORTS=2
3757	# The default setting of MV2_CPU_MAPPING gives best results
3758	# export MV2_ENABLE_AFFINITY=1
3759	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3760	# if [[ "$sgi_feature" = ice2 ]]
3761	# then
3762	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
3763	# else
3764	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3765	# fi
3766	if [[ $use_openmp = true ]]
3767	then
3768	unset MV2_CPU_MAPPING
3769	export MV2_ENABLE_AFFINITY=0
3770	fi
3771	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
3772	echo "*** MV2_ENABLE_AFFINITY=$MV2_ENABLE_AFFINITY"
3773	if [[ $use_openmp = true ]]
3774	then
3775	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3776	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3777	else
3778	mpiexec -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3779	fi
3780	elif [[ "$mpilib" = impi ]]
3781	then
3782	echo "mpirun -np $tasks_per_node inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos"
3783	mpirun -np $tasks_per_node inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos
3784	fi
3785	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3786	then
3787	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3788	elif [[ $host = lcflow ]]
3789	then
3790	mpiexec -machinefile $TMPDIR/machines -n $ii -env I_MPI_FABRICS shm:ofa a.out < runfile_atmos $ROPTS
3791	else
3792	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3793	fi
3794	else
3795
3796	# currently there is no full MPI-2 support on ICE and XT4
3797	(( iia = $numprocs_atmos / $threads_per_task ))
3798	(( iio = $numprocs_ocean / $threads_per_task ))
3799	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3800	printf "\n using $coupled_mode coupling"
3801	printf "\n\n"
3802
3803	if [[ $coupled_mode = "mpi2" ]]
3804	then
3805	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3806	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3807	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3808	then
3809
3810	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3811	then
3812	# export MPI_LAUNCH_TIMEOUT=360
3813	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3814	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3815	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3816	then
3817	# ulimit -s 300000 # A too large stack size causes problems
3818	# export MV2_NUM_PORTS=2
3819	# export MV2_CPU_MAPPING=0:1:2:3
3820	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3821	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3822	fi
3823
3824	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3825	then
3826
3827	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3828	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3829
3830	else
3831	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3832	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3833	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3834	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3835	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3836	fi
3837	wait
3838
3839	else
3840
3841	echo "coupled_run $iia $iio" > runfile_atmos
3842	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3843	then
3844
3845	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3846	then
3847	# export MPI_LAUNCH_TIMEOUT=360
3848	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3849	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3850	then
3851	# ulimit -s 300000 # A too large stack size causes problems
3852	# export MV2_NUM_PORTS=2
3853	# export MV2_CPU_MAPPING=0:1:2:3
3854	mpiexec ./a.out $ROPTS < runfile_atmos
3855	fi
3856
3857	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3858	then
3859
3860	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3861
3862	elif [[ $host = lck \|\| $host = lckordi ]]
3863	then
3864	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3865	fi
3866	wait
3867	fi
3868
3869	fi
3870	elif [[ $host = decalpha ]]
3871	then
3872	dmpirun -np $numprocs a.out $ROPTS
3873	elif [[ $host = lckyoto ]]
3874	then
3875	set -xv
3876	export P4_RSHCOMMAND=plesh
3877	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
3878	if [[ "$ENVIRONMENT" = BATCH ]]
3879	then
3880	if [[ "$cond2" = fujitsu ]]
3881	then
3882	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
3883	elif [[ "cond2" = pgi ]]
3884	then
3885	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
3886	else
3887	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
3888	fi
3889	else
3890	if [[ "$cond2" = "" ]]
3891	then
3892	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
3893	else
3894	mpirun -np $numprocs ./a.out $ROPTS
3895	fi
3896	fi
3897	set +xv
3898	elif [[ $host = lctit ]]
3899	then
3900	export OMP_NUM_THREADS=$threads_per_task
3901	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3902	if [[ "$threads_per_task" != 1 ]]
3903	then
3904	export MV2_ENABLE_AFFINITY=0
3905	fi
3906	echo "----- PBS_NODEFILE content:"
3907	cat $PBS_NODEFILE
3908	echo "-----"
3909	(( ii = $numprocs / $threads_per_task ))
3910	echo "mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS"
3911	mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS
3912	else
3913	mpprun -n $numprocs a.out $ROPTS
3914	fi
3915	[[ $? != 0 ]] && execution_error=true
3916
3917
3918	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3919	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3920	then
3921	apprentice
3922	fi
3923	else
3924	a.out $ROPTS
3925	fi
3926	fi
3927	if [[ $? != 0 \|\| $execution_error = true ]]
3928	then
3929
3930	# ABBRUCH BEI LAUFZEITFEHLER
3931	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3932	printf "\n +++ runtime error occured"
3933	locat=execution
3934	exit
3935	else
3936	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3937	printf "\n$striche\n *** execution finished \n"
3938
3939	# Stop the dvr streaming server and process the dvr output in order
3940	# to create dvrs- and html-files containing all streams
3941	if [[ "$dvrserver_id" != "" ]]
3942	then
3943	kill $dvrserver_id
3944	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3945
3946	# If there is a directory, data have been output by the
3947	# streaming server. Otherwise, user has chosen dvrp_output=local
3948	if [[ -d DATA_DVR ]]
3949	then
3950
3951	# Add the current dvr configuration file to the dvr output
3952	# directory
3953	cp .dvrserver.config DATA_DVR
3954
3955	# Process the dvr output (option -s for also generating
3956	# sequence mode data)
3957	process_dvr_output -d DATA_DVR -f $fname -s
3958
3959	else
3960
3961	# Process the local output
3962	process_dvr_output -l -d DATA_DVR -f $fname
3963
3964	fi
3965
3966	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3967	then
3968
3969	# Process dvr output generated in local mode (dvrp_output=local)
3970	process_dvr_output -l -d DATA_DVR -f $fname
3971
3972	fi
3973	fi
3974
3975
3976
3977	# Call of combine_plot_fields in order to merge single files written
3978	# by each PE into one file.
3979	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
3980	then
3981	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
3982	printf "\n 2d- and/or 3d-data may be incomplete!"
3983	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
3984	elif [[ "$combine_plot_fields" == true ]]
3985	then
3986	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
3987	combine_plot_fields${block}.x
3988	else
3989	# Temporary solution to skip combine_plot_fields. This is necessary in case of huge amount of
3990	# data output. To do: extend this branch by creating a batch job for combine_plot_fields.
3991	printf "\n\n\n *** post-processing: skipping combine_plot_fields (-Z option set) ..."
3992	fi
3993
3994
3995
3996	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3997	(( i = 0 ))
3998	while (( i < ioc ))
3999	do
4000	(( i = i + 1 ))
4001	if (( i == 1 ))
4002	then
4003	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
4004	fi
4005	printf "\n >>> ${out_command[$i]}"
4006	eval ${out_command[$i]}
4007	if (( i == ioc ))
4008	then
4009	printf "\n$striche\n"
4010	fi
4011	done
4012
4013
4014	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
4015	if [[ $do_trace = true ]]
4016	then
4017	printf "\n\n"
4018	ls -al
4019	fi
4020
4021
4022
4023	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
4024	(( i = 0 ))
4025	while (( i < iout ))
4026	do
4027	(( i = i + 1 ))
4028	if (( i == 1 ))
4029	then
4030	printf "\n\n *** saving OUTPUT-files:\n$striche"
4031	fi
4032
4033	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
4034	files_for_pes=false; filetyp=file
4035	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
4036	then
4037	files_for_pes=true; filetyp=directory
4038	actionout[$i]=""
4039	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
4040	then
4041	actionout[$i]=""
4042	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
4043	then
4044	files_for_pes=true; filetyp=directory
4045	actionout[$i]="ar"
4046	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
4047	then
4048	actionout[$i]="ar"
4049	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
4050	then
4051	files_for_pes=true; filetyp=directory
4052	actionout[$i]="fl"
4053	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
4054	then
4055	actionout[$i]="fl"
4056	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
4057	then
4058	files_for_pes=true; filetyp=directory
4059	actionout[$i]="tr"
4060	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
4061	then
4062	actionout[$i]="tr"
4063	fi
4064
4065	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
4066	then
4067	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
4068	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
4069	then
4070	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
4071	else
4072
4073
4074	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
4075	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
4076	# REMOTE-RECHNUNGEN
4077	if [[ "${actionout[$i]}" = tr ]]
4078	then
4079	if [[ $localhost != $fromhost ]]
4080	then
4081	if [[ $files_for_pes = false ]]
4082	then
4083	cps=""
4084	cst=""
4085	else
4086	cps=-c
4087	cst="/"
4088	fi
4089	if [[ $localhost = nech ]]
4090	then
4091
4092	# TRANSFER IN EIGENSTAENDIGEM JOB
4093	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4094	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4095	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4096	if [[ $files_for_pes = false ]]
4097	then
4098	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4099	else
4100	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
4101	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
4102	fi
4103
4104	echo "set -x" > transfer_${localout[$i]}
4105	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4106
4107	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
4108	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
4109	printf "\n or higher cycle\n"
4110	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4111
4112	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4113
4114	if [[ $localhost = nech ]]
4115	then
4116	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
4117	else
4118	if [[ "$LOGNAME" = b323013 ]]
4119	then
4120	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
4121	else
4122	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
4123	fi
4124	fi
4125
4126	else
4127
4128	# TRANSFER INNERHALB DIESES JOBS
4129	transfer_failed=false
4130	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
4131	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
4132	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4133	[[ $? != 0 ]] && transfer_failed=true
4134
4135	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4136	# LOKALER MASCHINE ANLEGEN
4137	if [[ $transfer_failed = true ]]
4138	then
4139	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4140	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4141
4142	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4143	# ANLEGEN.
4144	eval local_catalog=${pathout[$i]}
4145	if [[ ! -d $local_catalog ]]
4146	then
4147	printf " *** local directory does not exist. Trying to create:\n"
4148	printf " $local_catalog \n"
4149	mkdir -p $local_catalog
4150	fi
4151	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4152	transfer_problems=true
4153	fi
4154	fi
4155	else
4156
4157	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
4158	actionout[$i]=""
4159	fi
4160	fi
4161
4162
4163	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
4164	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
4165	# REMOTE-RECHNUNGEN
4166	if [[ "${actionout[$i]}" = tra ]]
4167	then
4168	if [[ $localhost != $fromhost ]]
4169	then
4170	if [[ $localhost = ibmh \|\| $localhost = nech ]]
4171	then
4172
4173	# TRANSFER IN EIGENSTAENDIGEM JOB
4174	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4175	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4176	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4177	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4178
4179	echo "set -x" > transfer_${localout[$i]}
4180	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4181
4182	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
4183	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
4184	printf "\n or higher cycle\n"
4185	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4186
4187	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4188
4189	if [[ $localhost = nech ]]
4190	then
4191	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
4192	else
4193	if [[ $LOGNAME = b323013 ]]
4194	then
4195	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
4196	else
4197	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
4198	fi
4199	fi
4200
4201	else
4202
4203	# TRANSFER INNERHALB DIESES JOBS
4204	transfer_failed=false
4205	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
4206	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
4207	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4208	[[ $? != 0 ]] && transfer_failed=true
4209
4210	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4211	# LOKALER MASCHINE ANLEGEN
4212	if [[ $transfer_failed = true ]]
4213	then
4214	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4215	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4216
4217	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4218	# ANLEGEN
4219	eval local_catalog=${pathout[$i]}
4220	if [[ ! -d $local_catalog ]]
4221	then
4222	printf " *** local directory does not exist. Trying to create:\n"
4223	printf " $local_catalog \n"
4224	mkdir -p $local_catalog
4225	fi
4226
4227	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4228	transfer_problems=true
4229	fi
4230	fi
4231	else
4232
4233	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
4234	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
4235	actionout[$i]=a
4236	fi
4237	fi
4238
4239
4240	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
4241	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
4242	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
4243	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
4244	if [[ "${actionout[$i]}" = fl ]]
4245	then
4246	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4247	chmod g+rx $tmp_data_catalog
4248	if [[ $files_for_pes = false ]]
4249	then
4250	printf "\n >>> OUTPUT: ${localout[$i]} to"
4251	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4252	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
4253	else
4254	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
4255	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4256	mkdir $tmp_data_catalog/${frelout[$i]}
4257	cd ${localout[$i]}
4258	for file in $(ls *)
4259	do
4260	ln -f $file $tmp_data_catalog/${frelout[$i]}
4261	done
4262	cd $TEMPDIR
4263	fi
4264
4265
4266	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
4267	if [[ $store_on_archive_system = true ]]
4268	then
4269
4270	if [[ $archive_system = asterix ]]
4271	then
4272	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4273	if [[ $files_for_pes = false ]]
4274	then
4275	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4276	else
4277	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4278	fi
4279	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4280	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
4281	echo "then" >> archive_${frelout[$i]}
4282	echo " do_stageout=false" >> archive_${frelout[$i]}
4283	echo "else" >> archive_${frelout[$i]}
4284	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
4285	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
4286	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
4287	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
4288	if [[ $files_for_pes = false ]]
4289	then
4290	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
4291	else
4292	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
4293	fi
4294	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
4295	echo "fi" >> archive_${frelout[$i]}
4296	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4297	elif [[ $archive_system = DMF ]]
4298	then
4299	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4300	if [[ $files_for_pes = false ]]
4301	then
4302	printf "\n +++ archiving of single files impossible with $archive_system !\n"
4303	locat=DMF
4304	exit
4305	else
4306	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
4307	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
4308	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
4309	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
4310	fi
4311	elif [[ $archive_system = tivoli ]]
4312	then
4313	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4314	if [[ $files_for_pes = false ]]
4315	then
4316	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4317	echo "set -x" >> archive_${frelout[$i]}
4318	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4319	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4320	else
4321
4322	echo "set -x" >> archive_${frelout[$i]}
4323	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
4324	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4325	cd $tmp_data_catalog
4326	all_files=`ls -1 ${frelout[$i]}/*`
4327	cd - > /dev/null
4328	(( inode = 0 ))
4329	(( tp1 = tasks_per_node + 1 ))
4330	while (( inode < nodes ))
4331	do
4332	# echo "*** all_files = \"$all_files\" "
4333	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4334	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4335	# echo "*** tasks_per_node = \"$tasks_per_node\" "
4336	# echo "*** files = \"$files\" "
4337	# echo "*** all_files = \"$all_files\" "
4338	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4339	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4340	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
4341	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4342	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4343	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4344	(( inode = inode + 1 ))
4345	done
4346	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4347	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4348	fi
4349	elif [[ $archive_system = ut ]]
4350	then
4351	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4352	if [[ $files_for_pes = false ]]
4353	then
4354	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4355	echo "set -x" >> archive_${frelout[$i]}
4356	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4357	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4358	else
4359
4360	echo "set -x" >> archive_${frelout[$i]}
4361	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
4362	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
4363	cd $tmp_data_catalog
4364	all_files=`ls -1 ${frelout[$i]}/*`
4365	cd - > /dev/null
4366	(( inode = 0 ))
4367	(( tp1 = tasks_per_node + 1 ))
4368	while (( inode < nodes ))
4369	do
4370	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4371	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4372	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4373	(( inode = inode + 1 ))
4374	done
4375	fi
4376	elif [[ $archive_system = none ]]
4377	then
4378	printf " +++ archiving on $localhost not available!\n"
4379	fi
4380
4381	if [[ $archive_system != none ]]
4382	then
4383	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
4384	then
4385	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
4386	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog archive_${frelout[$i]}
4387	elif [[ $localhost = nech ]]
4388	then
4389	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
4390	fi
4391	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4392	fi
4393	else
4394	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
4395	fi
4396
4397
4398	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
4399	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4400	if [[ $files_for_pes = false ]]
4401	then
4402	cat /dev/null > ${pathout[$i]}
4403	else
4404	mkdir -p ${pathout[$i]}
4405	fi
4406
4407	fi
4408
4409
4410	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
4411	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
4412	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4413	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
4414	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
4415	# GEMAESSEN ARCHIVIERUNGEN GESETZT
4416	if [[ "${actionout[$i]}" = ar ]]
4417	then
4418	if [[ $files_for_pes = false ]]
4419	then
4420	printf "\n >>> OUTPUT: ${localout[$i]} to"
4421	printf "\n ${pathout[$i]}"
4422	printf "\n File will be copied to archive-system ($archive_system) !\n"
4423	else
4424	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
4425	printf "\n ${pathout[$i]}"
4426	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
4427	fi
4428	mv ${localout[$i]} ${frelout[$i]}
4429
4430	file_saved=false
4431
4432	if [[ $archive_system = asterix ]]
4433	then
4434	do_stageout=true
4435	(( stageout_anz = 0 ))
4436	while [[ $do_stageout = true ]]
4437	do
4438	if [[ $files_for_pes = false ]]
4439	then
4440	stageout ${frelout[$i]} > STAGE_OUTPUT
4441	else
4442	stageout -t ${frelout[$i]} > STAGE_OUTPUT
4443	fi
4444	cat STAGE_OUTPUT
4445	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
4446	then
4447	file_saved=true
4448	do_stageout=false
4449	else
4450	if [[ $files_for_pes = false ]]
4451	then
4452	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
4453	else
4454	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
4455	fi
4456	(( stageout_anz = stageout_anz + 1 ))
4457	if (( stageout_anz == 10 ))
4458	then
4459	printf "\n +++ stoped after 10 unsuccessful tries!"
4460	archive_save=false
4461	do_stageout=false
4462	else
4463	printf "\n *** new try to store on archive after 15 min:"
4464	sleep 900
4465	fi
4466	fi
4467	done
4468	elif [[ $archive_system = DMF ]]
4469	then
4470	if [[ $files_for_pes = false ]]
4471	then
4472	printf "\n +++ archiving of single files impossible on $archive_system!\n"
4473	locat=DMF
4474	exit
4475	else
4476	rm -rf $ARCHIVE/${frelout[$i]}
4477	cp -r ${frelout[$i]} $ARCHIVE
4478	fi
4479	file_saved=true
4480	elif [[ $archive_system = tivoli ]]
4481	then
4482	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4483	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4484	# GELEGT WERDEN
4485	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4486	chmod g+rx $tmp_data_catalog
4487	if [[ $files_for_pes = false ]]
4488	then
4489	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4490	else
4491	mkdir $tmp_data_catalog/${frelout[$i]}
4492	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4493	fi
4494
4495	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4496	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4497	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4498	if [[ $files_for_pes = false ]]
4499	then
4500	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4501	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4502	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4503	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4504	else
4505	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4506	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4507	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4508	fi
4509
4510	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
4511	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4512	file_saved=true
4513
4514	elif [[ $archive_system = ut ]]
4515	then
4516	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4517	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4518	# GELEGT WERDEN
4519	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4520	chmod g+rx $tmp_data_catalog
4521	if [[ $files_for_pes = false ]]
4522	then
4523	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4524	else
4525	mkdir $tmp_data_catalog/${frelout[$i]}
4526	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4527	fi
4528
4529	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4530	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4531	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4532	if [[ $files_for_pes = false ]]
4533	then
4534	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4535	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4536	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4537	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4538	else
4539	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4540	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4541	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4542	fi
4543
4544	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
4545	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4546	file_saved=true
4547
4548	else
4549	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
4550	archive_save=false
4551	fi
4552	if [[ $file_saved = true ]]
4553	then
4554	if [[ $files_for_pes = false ]]
4555	then
4556	cat /dev/null > ${pathout[$i]}
4557	else
4558	mkdir -p ${pathout[$i]}
4559	fi
4560	fi
4561	fi
4562
4563	# APPEND AUF LOKALER MASCHINE
4564	if [[ "${actionout[$i]}" = "a" ]]
4565	then
4566	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4567	then
4568	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}.${extout[$i]}\n"
4569	cat ${localout[$i]} >> ${pathout[$i]}.${extout[$i]}
4570	else
4571	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
4572	cat ${localout[$i]} >> ${pathout[$i]}
4573	fi
4574	fi
4575
4576	# KOPIEREN AUF LOKALER MASCHINE
4577	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
4578	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
4579	then
4580
4581	# KOPIEREN AUF EINPROZESSORMASCHINE
4582	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4583	then
4584	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
4585	if [[ $link_local_output = true ]]
4586	then
4587	printf " using ln -f\n"
4588	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4589	fi
4590	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4591	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
4592	then
4593	if [[ $link_local_output = true ]]
4594	then
4595	printf " ln failed, using cp...\n"
4596	fi
4597	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4598	fi
4599	else
4600	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
4601	if [[ $link_local_output = true ]]
4602	then
4603	printf " using ln -f\n"
4604	ln -f ${localout[$i]} ${pathout[$i]}
4605	fi
4606	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4607	if [[ ! -f "${pathout[$i]}" ]]
4608	then
4609	if [[ $link_local_output = true ]]
4610	then
4611	printf " ln failed, using cp...\n"
4612	fi
4613	cp ${localout[$i]} ${pathout[$i]}
4614	fi
4615	fi
4616
4617	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
4618	then
4619
4620	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
4621	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
4622	# WIRD DANN KOPIERT
4623	# PER MOVE UMBENANNT WERDEN
4624	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4625	if [[ $link_local_output = true ]]
4626	then
4627	printf " using ln -f\n"
4628	mkdir ${pathout[$i]}
4629	cd ${localout[$i]}
4630	for file in $(ls *)
4631	do
4632	ln -f $file ${pathout[$i]}
4633	done
4634	cd $TEMPDIR
4635	fi
4636	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4637	if [[ ! -f "${pathout[$i]}/_0000" ]]
4638	then
4639	if [[ $link_local_output = true ]]
4640	then
4641	printf " ln failed for .../_0000, using cp...\n"
4642	fi
4643	cp -r ${localout[$i]} ${pathout[$i]}
4644	fi
4645
4646	fi
4647	fi
4648	done
4649	if (( i != 0 ))
4650	then
4651	if [[ $transfer_problems = true ]]
4652	then
4653	printf "\n$striche\n *** OUTPUT-files saved"
4654	printf "\n +++ WARNING: some data transfers failed! \n"
4655	else
4656	printf "\n$striche\n *** all OUTPUT-files saved \n"
4657	fi
4658	fi
4659
4660
4661	# EVENTUELL FOLGEJOB STARTEN
4662	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4663	if [[ -f CONTINUE_RUN ]]
4664	then
4665
4666	if [[ $archive_save = true ]]
4667	then
4668
4669	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4670	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4671	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4672	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4673	# HANDEN
4674	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4675	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4676	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4677	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4678	then
4679	mc=`echo $mc \| sed 's/#/f/g'`
4680	fi
4681
4682
4683	# JOB STARTEN
4684	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4685	echo " $mc"
4686	printf "\n$striche\n"
4687	if [[ $localhost != $fromhost ]]
4688	then
4689
4690	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibms ]]
4691	then
4692	echo "*** ssh will be used to initiate restart-runs!"
4693	echo " return_addres=\"$return_addres\" "
4694	echo " return_username=\"$return_username\" "
4695	if [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4696	then
4697	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4698	else
4699	if [[ $localhost = ibmkisti ]]
4700	then
4701	ssh $usern@gaiad "ssh $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4702	else
4703	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4704	fi
4705	fi
4706	else
4707	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4708	locat=restart; exit
4709	fi
4710
4711	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4712	# DER AKTUELLE JOB ENDET
4713	if [[ $queue = special1q ]]
4714	then
4715	sleep 120
4716	else
4717	sleep 30
4718	fi
4719
4720	else
4721
4722	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4723	# RUFEN WERDEN, AUSSER AUF lcfimm
4724	cd $LOCAL_PWD
4725	if [[ $localhost = lcfimm ]]
4726	then
4727	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4728	else
4729	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4730	fi
4731	cd - > /dev/null
4732	fi
4733	printf "\n$striche\n *** restart-run initiated \n"
4734
4735
4736	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4737	# GEHOLT WORDEN SIND, LOESCHEN
4738	(( i = 0 ))
4739	while (( i < iin ))
4740	do
4741	(( i = i + 1 ))
4742	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4743	then
4744	rm -r $tmp_data_catalog/${frelin[$i]}
4745	fi
4746	done
4747
4748	else
4749
4750	printf "\n +++ no restart-run possible, since errors occured"
4751	printf "\n during the archive process"
4752	fi
4753
4754	fi
4755
4756
4757
4758	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4759	if [[ "$email_notification" != "none" ]]
4760	then
4761
4762	if [[ $localhost != $fromhost ]]
4763	then
4764	if [[ -f CONTINUE_RUN ]]
4765	then
4766	echo "PALM restart run necessary" > email_text
4767	echo "description header of actual run:" >> email_text
4768	cat CONTINUE_RUN >> email_text
4769	echo "mrun-command to restart:" >> email_text
4770	echo "$mc" >> email_text
4771	else
4772	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4773	fi
4774	mail $email_notification < email_text
4775	printf "\n *** email notification sent to \"$email_notification\" "
4776	fi
4777	fi
4778
4779
4780
4781	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4782	cd $HOME
4783	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4784
4785	else
4786
4787
4788	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4789	# CHENDE AKTIONEN DURCHGEFUEHRT
4790
4791	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4792	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
4793	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4794	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4795	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4796	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4797	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4798	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4799	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4800	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4801	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4802	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4803	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4804	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4805	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4806	if [[ $use_openmp = true ]]
4807	then
4808	mrun_com=${mrun_com}" -O $threads_per_task"
4809	fi
4810	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4811	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
4812	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4813	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4814	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4815	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4816	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4817	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4818	[[ "$check_namelist_files" = false ]] && mrun_com=${mrun_com}" -z"
4819	[[ "$combine_plot_fields" = false ]] && mrun_com=${mrun_com}" -Z"
4820	[[ "$max_par_io_str" != "" ]] && mrun_com=${mrun_com}" -w $max_par_io_str"
4821	if [[ $do_remote = true ]]
4822	then
4823	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4824	fi
4825
4826
4827	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4828	jobfile=jobfile.$RANDOM
4829
4830
4831	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4832	echo "mkdir $TEMPDIR" >> $jobfile
4833	echo "cd $TEMPDIR" >> $jobfile
4834
4835
4836	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4837	if [[ $do_trace = true ]]
4838	then
4839	echo "set -x" >> $jobfile
4840	else
4841	echo "set +vx" >> $jobfile
4842	fi
4843
4844
4845	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4846	# DATEI FUER DEN JOB
4847	if [[ $( echo $host \| cut -c1-5 ) = lcsgi \|\| $host = ibmkisti ]]
4848	then
4849
4850	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4851	# KOPIEREN
4852	if [[ $restart_run != true ]]
4853	then
4854	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4855	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4856	fi
4857
4858	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4859	# (BEI JOBS AUF LOKALEM RECHNER REICHT CP)
4860	echo "set -x" >> $jobfile
4861	if [[ $host = $localhost ]]
4862	then
4863	echo "cp -r $working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4864	else
4865	if [[ $host != ibmkisti ]]
4866	then
4867	echo "scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4868	else
4869	# on KISTI's IBM firewall is only opened on interactive node
4870	echo "localdir=\`pwd\`" >> $jobfile
4871	echo "ssh $remote_username@gaiad \"cd \$localdir; scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
4872	fi
4873	fi
4874	echo "export SOURCES_COMPLETE=true" >> $jobfile
4875
4876	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4877	# ARBEITSVERZEICHNIS VERSCHIEBEN
4878	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4879	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4880	echo "execute_mrun=true" >> $jobfile
4881	echo " " >> $jobfile
4882
4883	else
4884
4885	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4886	# SOWIE GEGEBENENFALLS DES MAKEFILES
4887	if [[ $do_compile = true ]]
4888	then
4889
4890	source_catalog=SOURCES_FOR_RUN_$fname
4891
4892	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4893	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4894	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4895	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4896	echo "export SOURCES_COMPLETE=true" >> $jobfile
4897	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4898
4899	for filename in $source_list
4900	do
4901	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4902	echo "cat > $filename << \"%END%\"" >> $jobfile
4903	cat $source_catalog/$filename >> $jobfile
4904	echo " " >> $jobfile
4905	echo "%END%" >> $jobfile
4906	echo " " >> $jobfile
4907	done
4908
4909	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4910	echo "cat > Makefile << \"%END%\"" >> $jobfile
4911	cat $source_catalog/Makefile >> $jobfile
4912	echo " " >> $jobfile
4913	echo "%END%" >> $jobfile
4914	echo " " >> $jobfile
4915
4916	echo "cd - > /dev/null" >> $jobfile
4917
4918	fi
4919
4920
4921	# ABSPEICHERN DER KONFIGURATIONSDATEI
4922	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4923	echo "cat > $config_file << \"%END%\"" >> $jobfile
4924	cat $config_file >> $jobfile
4925	echo "%END%" >> $jobfile
4926	echo " " >> $jobfile
4927
4928
4929	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
4930	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4931	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
4932	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
4933	echo "%END%" >> $jobfile
4934	echo "chmod u+x $mrun_script_name" >> $jobfile
4935	echo "execute_mrun=true" >> $jobfile
4936	echo " " >> $jobfile
4937
4938	fi
4939
4940
4941	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
4942	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
4943	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
4944	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
4945	if [[ $do_remote = true ]]
4946	then
4947	(( i = 0 ))
4948	while (( i < iin ))
4949	do
4950	(( i = i + 1 ))
4951	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
4952	if [[ "${transin[$i]}" = job ]]
4953	then
4954	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
4955	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
4956	echo " " >> $jobfile
4957	echo "%END%" >> $jobfile
4958	else
4959	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
4960	fi
4961
4962	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
4963	echo "if [[ \$? = 1 ]]" >> $jobfile
4964	echo "then" >> $jobfile
4965	echo " echo \" \" " >> $jobfile
4966	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
4967	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
4968	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
4969	echo " execute_mrun=false" >> $jobfile
4970	echo "fi" >> $jobfile
4971	done
4972	fi
4973
4974	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
4975	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
4976	echo "LOCAL_PWD=$working_directory" >> $jobfile
4977	echo "export LOCAL_PWD" >> $jobfile
4978
4979	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
4980	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
4981	echo "export LOCAL_MRUN_PATH" >> $jobfile
4982
4983	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
4984	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
4985	then
4986	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
4987	fi
4988
4989	# MRUN AUF ZIELRECHNER AUFRUFEN (queue is workaround for ibmkisti)
4990	echo "set -x" >> $jobfile
4991	echo "queue=$queue" >> $jobfile
4992	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
4993
4994	echo 'ls -al; echo `pwd`' >> $jobfile
4995	echo "cd \$HOME" >> $jobfile
4996	echo "rm -rf $TEMPDIR" >> $jobfile
4997
4998
4999
5000
5001	# JOB PER SUBJOB STARTEN
5002	if [[ $silent = false ]]
5003	then
5004	printf "\n "
5005	else
5006	printf "\n\n"
5007	fi
5008
5009	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $jobfile
5010	rm -rf $jobfile
5011
5012
5013	fi # ENDE REMOTE-TEIL
5014
5015
5016
5017	# ENDE DER PROZEDUR

Note: See TracBrowser for help on using the repository browser.

Download in other formats:

| Impressum | ©Leibniz Universität Hannover |