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source: palm/trunk/SCRIPTS/mrun @ 291

Last change on this file since 291 was 291, checked in by raasch, 16 years ago
changes for coupling with independent precursor runs; z_i calculation with Sullivan criterion
Property svn:keywords set to `Id Rev`
File size: 162.3 KB

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1	#!/bin/ksh
2	# mrun - Plot-Shellskript
3	# $Id: mrun 291 2009-04-16 12:07:26Z raasch $
4
5	# Prozedur zum Starten von Modellaeufen
6
7	# letzte Aenderung:
8	# 03/03/94 - Siggi - Entwicklungsbeginn
9	# 21/03/94 - Siggi - Entwicklungsabschluss (Version 1.0)
10	# 09/12/94 - Siggi - allexport unterbunden; statt dessen werden jetzt ein-
11	# zelne Variable exportiert. Dies ist noetig, weil an-
12	# sonsten irgendein Speicher ueberlaeuft und von mrun
13	# aufgerufene Programme (z.B. stageout) mit Fehlern
14	# abbrechen (too many arguments)
15	# 20/06/95 - Siggi - noclobber muss explizit abgeschaltet, da jetzt
16	# defaultmaessig im RRZN-Profile eingeschaltet
17	# 10/06/97 - Siggi - Zusaetzliche Option -C bei cpp, damit // nicht
18	# wegfallen
19	# 25/04/00 - Siggi - Version 1.5
20	# remote_addres und remote_user in return_addres bzw.
21	# return_username umbenannt, return_username wird dem
22	# mrun-Aufruf im Job ueber Option -U mitgegeben.
23	# Neue Variable remote_username, die beim interaktiven
24	# mrun-Aufruf zwingend ueber die neue Option -u oder
25	# in der Konfigurationsdatei angegeben werden muss.
26	# 08/02/01 - Siggi - Alle mrun-Meldungen ins englische uebersetzt,
27	# Version 1.7
28	# 05/05/02 - Siggi - Uebersetzungen mittels make-Mechanismus moeglich
29	# 21/11/02 - Siggi - ENV-Variable XLFRTEOPTS wird vor Ausfuehrung auf
30	# IBM gesetzt, um Record-Laenge der NAMELIST-Dateien,
31	# zu bestimmen; Praeprozessoroptionen haben nun alle
32	# die Form -Dtext=text, weil auf IBM sonst text durch
33	# die leere Zeichenkette ersetzt wird
34	# 01/08/03 - Siggi - Test of implementing dvrp+1PE on ibm
35	# 07/01/04 - Siggi - additional preprocessor directive for ibm included
36	# (-D$OMP=OMP) in order to avoid problems with
37	# OMP_NUM_THREADS
38	# 04/01/05 - Siggi - archiving on hanni and berni is done in separate
39	# tar files, one for each node used
40	# 07/01/04 - Siggi - old code for t3e, vpp and hpcs eliminated
41	# 09/01/05 - Siggi - workaround for getting the IP address on gfdl3
42	# 17/01/05 - Siggi - job for data transfer to local machine now within
43	# job class c1 (HLRN)
44	# 27/01/05 - Siggi - IP address workaround for gfdl3 removed
45	# 28/01/05 - Siggi - tar-filenames on $PERM (HLRN) now include the
46	# base filename and cycle number
47	# 16/02/05 - Gerald - hababai validated
48	# 14/03/05 - Siggi - abort on NEC after first runtime error (F_ERRCNT)
49	# 29/03/05 - Marcus - berni*-en0 validated
50	# 21/04/05 - Siggi - transfer-job-protocol for avs-data is no more stored
51	# 24/04/05 - Siggi - netcdf support on lcmuk
52	# 25/04/05 - Siggi - netcdf support on gfld3 (decalpha)
53	# 11/05/05 - Siggi - files with non-numeric extensions (.xxx after cycle
54	# number) can now be used within interactive runs
55	# 12/05/05 - Siggi - netcdf support on ibm
56	# 13/05/05 - Siggi - error in tar-filenames on $PERM (HLRN) removed
57	# 18/05/05 - Siggi - netcdf support on nec
58	# 24/05/05 - Siggi - netcdf support on ibms
59	# 14/06/05 - Siggi - sleep interval after submit of restart job increased
60	# to 30 seconds
61	# 28/06/05 - Siggi - bora adjusted to new intel compiler (LD_LIBRARY_
62	# PATH is temporarily set)
63	# 07/09/05 - Siggi - setting of MP_EAGER_LIMIT switched off because it
64	# caused warnings in the job protocol
65	# 20/10/05 - Siggi - update of netcdf-version on decalpha (gfdl3)
66	# 25/10/05 - Siggi - error in listing files for getting the cycle number
67	# removed
68	# 26/10/05 - Siggi - new paths for dvrp-library, transfer of catalogs
69	# realized by file attribute trpe
70	# 28/10/05 - Siggi - if existing, the file extension is output in case
71	# of missing input file - no job abort in case of
72	# missing input files with file extensions
73	# (preliminary solution)
74	# 31/10/05 - Siggi - data transfer from nech now within seperate job
75	# 04/11/05 - Siggi - netcdf 3.6.0-p1 on ibmh/ibmb
76	# 07/12/05 - Siggi - gallego and elephanta admitted
77	# 30/12/05 - Siggi - gfdl5 (ibmy) admitted
78	# 10/01/06 - Siggi - cpp directive for NetCDF 64bit support
79	# 20/01/06 - Siggi - cpp directive for ibmy
80	# 09/02/06 - Siggi - ibmy admitted for batch mode
81	# 13/04/06 - Siggi - ostria admitted
82	# 18/04/06 - Siggi - usage of OpenMP implemented (additional option -O)
83	# 10/05/06 - Siggi - environment variable XLSMPOPTS set on IBM for
84	# optimization of OpenMP runs (option stacksize is
85	# necessary for large gridpoint numbers because
86	# otherwise a segmentation fault occurs)
87	# 23/05/05 - Siggi - lctit (SUN Fire X4600) admitted
88	# 21/08/06 - Siggi - standard mrun path on scirocco is as on bora
89	# 23/08/06 - Siggi - netcdf support for scirocco (notebook)
90	# 20/09/06 - Marcus - add DVRP library on nech
91	# 24/10/06 - Siggi - Environment variables for PALM steering are written
92	# on local NAMELIST file ENVPAR
93	# 24/11/06 - Siggi - levanto admitted, maestro switched to ifc 9.1
94	# 28/11/06 - Siggi - call to interpret_config.x_levanto because of SuSe 10
95	# 06/02/07 - Siggi - add DVRP library on lcmuk
96	# 07/02/07 - Siggi - revision of source code handling, source code is
97	# now expected in directory given by source_path and
98	# not in the current working directory, source code
99	# files provided in add_source_path are allways
100	# compiled, source code to be compiled is allways
101	# sampled in SOURCES_FOR_RUN_$fname which is a
102	# subdirectory of the current working directory,
103	# -s TEST changed to -s WRITE_PERMIT or -s WP,
104	# adapted for RIAM (neck)
105	# bugfix for cycle number of output file (extout)
106	# all hpmuk-related code removed
107	# 14/02/07 - Siggi - dvrp support for neck added
108	# 28/02/07 - Siggi - empty lines in configuration file are accepted
109	# mrun_path replaced by PALM_BIN,
110	# all machines are calling interpret_config.x
111	# 14/03/07 - Siggi - fimm admitted, revision number added to terminal
112	# output
113	# 16/03/07 - Siggi - adjustments for lctit
114	# 29/03/07 - Siggi - global revision transfered to batch job by new
115	# option -G
116	# 30/03/07 - Siggi - compilation "by hand" removed, cpp-directives/options
117	# + netcdf/dvrp-options are read from configuration
118	# file, host identifier (local_host) is read from
119	# config file, code related to ftp filetransfer
120	# removed (incl. option -f)
121	# 19/06/07 - Siggi - time limit for cdata jobs increased
122	# 25/07/07 - Siggi - two sets of executables can be started on lcmuk,
123	# if new option -Y (coupling) is given,
124	# output of executables to aout_output removed,
125	# messages are immediately written to stdout instead
126	# 03/08/07 - Marcus - add XOPT="-X $numprocs" for lcfimm
127	# 09/08/07 - Marcus - workaround on lcfimm to propagate environment
128	# variables out to the nodes in coupled mode -disabled-
129	# 13/08/07 - Marcus - start local restart jobs per ssh on lcfimm
130	# 28/08/07 - Marcus - completely remove workaround on lcfimm to propagate
131	# environment variables out to the nodes in coupled mode
132	# 15/10/07 - Siggi - Preliminary adjustments for lctit, based on Jin's
133	# suggestions
134	# 19/10/07 - Marcus - further adjustments for lctit: add new optional
135	# argument -g group_number, admit all sla* node_usage
136	# queues
137	# 30/10/07 - Marcus - further adjustments for queues on lctit
138	# 14/02/08 - Bjoern - link of restart files with long file name possible
139	# 28/02/08 - Marcus - If environment variable link_local_output is set to
140	# true, mrun tries "ln -f" on local output and resorts
141	# to "cp" or "cp -r" on error
142	# 15/04/08 - Siggi - argument -c introduced to most of the subjob calls,
143	# which allows the user to choose his own job catalog
144	# by setting job_catalog in the configuration file
145	# (default is ~/job_queue),
146	# workaround for mpiexec with -env option,
147	# adjustments for lcxt4 (Bergen Center for Computational
148	# Science)
149	# 22/05/08 - Marcus - If environment variable link_local_input is set to
150	# true, mrun tries "ln -f" on local input and resorts
151	# to "cp" or "cp -r" on error
152	# 27/05/08 - Siggi - PATH is set to PALM_BIN everywhere (missing so far)
153	# 14/07/08 - Siggi - adjustments for lcsgih
154	# 08/08/08 - Marcus - typo removed in lcxt4 branch
155	# 17/09/08 - Siggi - restart mechanism adjusted for lcsgi
156	# 02/10/08 - BjornM - argument "-Y" modified, adjustments for coupled runs
157	# 21/10/08 - Siggi - bugfix for the case that -K has more than one
158	# argument
159	# 08/11/08 - Siggi - bugfix for depository path settings in configuration
160	# file
161	# 11/11/08 - Siggi - rules for using user code files changed: user
162	# code splitted into one file per subroutine,
163	# user can provide his/her own makefile, only
164	# default source-code filenames are allowed
165	# 14/11/08 - Siggi - cond1 and cond2 are part of the depository name
166	# 08/01/09 - Siggi - mpi module on sgi machines to be used can be set
167	# with environment variable mpilib
168	# 13/01/09 - Siggi - totalview on hice/bice can be used in debug mode
169	# using environment variable totalview
170	# 25/02/09 - Siggi - cputime-option (-t) is allowed to be omitted for
171	# interactive runs
172	# 05/03/09 - Siggi - adjustments for new NEC-SX9 at RIAM (necriam)
173	# 16/03/09 - Siggi - dvrp_lib, dvrp_inc replaced by dvr_lib, dvr_inc,
174	# dvr streaming server is automatically started using
175	# new variable dvr_server and a configuration file
176	# .dvrserver.config,
177	# processing of dvr output files using new script
178	# process_dvr_output implemented, in order to make
179	# dvr application more user friendly
180	# 20/03/09 - Marcus - update of n1ge command for lctit
181	# 16/04/09 - Siggi - new option -y for precursor (uncoupled) ocean runs
182	# to be followed by a coupled atmosphere-ocean run
183
184
185	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
186
187	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
188	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
189	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
190
191	AddFilenames=""
192	additional_conditions=""
193	add_source_path=""
194	afname=""
195	archive_save=true
196	archive_system=none
197	compiler_name=""
198	cond1=""
199	cond2=""
200	config_file=.mrun.config
201	coupled_dist=""
202	coupled_mode="mpi1"
203	cpp_opts=""
204	cpp_options=""
205	cpumax=0
206	cpurest=0
207	delete_temporary_catalog=true
208	do_batch=false
209	do_compile=true
210	do_remote=false
211	do_stagein=true
212	do_stageout=true
213	do_trace=false
214	email_notification=""
215	exclude=""
216	executable=""
217	execution_error=false
218	fimm=false
219	fname=test
220	fromhost=""
221	global_revision=""
222	group_number=none
223	host=""
224	host_file=""
225	hp=""
226	ignore_archive_error=false
227	input_list=""
228	interpreted_config_file=""
229	job_catalog="~/job_queue"
230	job_on_file=""
231	keep_data_from_previous_run=false
232	link_local_input=false
233	link_local_output=false
234	localhost_realname=$(hostname)
235	local_compile=false
236	local_dvrserver_running=.FALSE.
237	locat=normal
238	mainprog=""
239	makefile=""
240	mc=$0
241	while [[ $(echo $mc \| grep -c "/") != 0 ]]
242	do
243	mc=`echo $mc \| cut -f2- -d"/"`
244	done
245	module_files=""
246	mrun_script_name=$mc
247	netcdf_inc=""
248	netcdf_lib=""
249	netcdf_support=false
250	node_usage=default
251	numprocs=""
252	numprocs_atmos=0
253	numprocs_ocean=0
254	OOPT=""
255	openmp=false
256	output_list=""
257	package_list=""
258	punkte="..........................................................."
259	queue=none
260	read_from_config=""
261	restart_run=false
262	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
263	if [[ $return_addres = 130.75.105.158 ]]
264	then
265	return_addres=172.20.25.41
266	echo "+++ WARNING: return_addres changed to $return_addres !!!!!"
267	fi
268	return_password=""
269	return_username=$LOGNAME
270	remotecall=false
271	remote_username=""
272	run_coupled_model=false
273	run_mode=""
274	scirocco=false
275	store_on_archive_system=true
276	striche=" ----------------------------------------------------------------------------"
277	silent=false
278	source_list=""
279	source_path=SOURCE
280	tasks_per_node=""
281	threads_per_task=1
282	tmpcreate=false
283	tmp_data_catalog=""
284	transfer_problems=false
285	usern=$LOGNAME
286	working_directory=`pwd`
287	TOPT=""
288	XOPT=""
289	zeit=$( date \| cut -c 12-19 )
290
291	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
292	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
293
294	typeset -R30 calltime
295	typeset -L20 spalte1
296	typeset -L40 spalte2
297	typeset -L60 spalte3
298	typeset -L35 string1=`date`
299	typeset -L12 string2=$usern
300	typeset -L12 string3=$localhost_realname
301	typeset -L12 string4
302	typeset -L12 string5
303	typeset -L30 version="MRUN 2.0 Rev$Rev: 291 $"
304
305
306
307	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
308	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
309
310	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
311	# EXPORTIERT WERDEN
312	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
313	export group_number input_list memory numprocs output_list queue run_mode
314
315
316
317	# FEHLERBEHANDLUNG
318	# BEI EXIT:
319	trap 'rm -rf $working_directory/tmp_mrun
320	if [[ $locat != localhost ]]
321	then
322	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
323	# then
324	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
325	#MRUN-calls on $localhost
326	#
327	#date and time user localhost remotehost termination mrun-command
328	#--------------------------------------------------------------------------------------------------------------------
329	#%STATEND%
330	# chmod 666 ${mrun_path}/statistik/mrun_statistik
331	# fi
332	#
333	# # EINTRAG IN DIE STATISTIK-DATEI
334	# string4=$host
335	# string5=$locat
336	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
337	# then
338	# if [[ $do_batch = true ]]
339	# then
340	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
341	# else
342	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
343	# fi
344	# fi
345	echo " " > /dev/null
346	fi
347
348	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
349	then
350
351	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
352	(( i = 0 ))
353	while (( i < iec ))
354	do
355	(( i = i + 1 ))
356	printf "\n *** Execution of ERROR-command:\n"
357	printf " >>> ${err_command[$i]}\n"
358	eval ${err_command[$i]}
359	done
360	if [[ -n $interpreted_config_file ]] then
361	rm -rf $interpreted_config_file
362	fi
363	if [[ -n .mrun_environment ]] then
364	rm -rf .mrun_environment
365	fi
366	if [[ $tmpcreate = true ]]
367	then
368	printf "\n *** Contents of \"$TEMPDIR\":\n"
369	ls -al; cd
370	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
371	fi
372	if [[ "$dvrserver_id" != "" ]]
373	then
374	echo "+++ killing dvrserver_id=$dvrserver_id"
375	kill $dvrserver_id
376	fi
377	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
378	then
379	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
380	fi
381	printf "\n\n+++ MRUN killed \n\n"
382	elif [[ $locat != control_c ]]
383	then
384	printf "\n\n --> all actions finished\n\n"
385	printf " Bye, bye $usern !!\n\n"
386	fi' exit
387
388
389	# BEI TERMINAL-BREAK:
390	trap 'rm -rf $working_directory/tmp_mrun
391	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
392	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
393	then
394	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
395	fi
396	if [[ "$dvrserver_id" != "" ]]
397	then
398	echo "+++ killing dvrserver_id=$dvrserver_id"
399	kill $dvrserver_id
400	fi
401	printf "\n+++ MRUN killed by \"^C\" \n\n"
402	locat=control_c
403	exit
404	' 2
405
406
407	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
408	# BEEN SET
409	if [[ "$PALM_BIN" = "" ]]
410	then
411	printf "\n +++ environment variable PALM_BIN has not been set"
412	printf "\n please set it to the directory where the PALM scripts are located"
413	locat=palm_bin; exit
414	fi
415	export PATH=$PALM_BIN:$PATH
416
417
418
419	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
420	# FUER FOLGEJOBS BENOETIGT WIRD
421	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:Op:P:q:r:R:s:St:T:u:U:vxX:yY: option
422	do
423	case $option in
424	(a) afname=$OPTARG;;
425	(A) store_on_archive_system=false; mc="$mc -A";;
426	(b) do_batch=true; mc="$mc -b";;
427	(B) delete_temporary_catalog=false; mc="$mc -B";;
428	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
429	(C) restart_run=true; mc="$mc -C";;
430	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
431	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
432	(F) job_on_file="-D"; mc="$mc -F";;
433	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
434	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
435	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
436	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
437	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
438	(I) ignore_archive_error=true; mc="$mc -I";;
439	(k) keep_data_from_previous_run=true; mc="$mc -k";;
440	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
441	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
442	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
443	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
444	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
445	(O) use_openmp=true; mc="$mc -O";;
446	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
447	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
448	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
449	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
450	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
451	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
452	(S) read_from_config=false; mc="$mc -S";;
453	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
454	(T) tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
455	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
456	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
457	(v) silent=true; mc="$mc -v";;
458	(x) do_trace=true;set -x; mc="$mc -x";;
459	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
460	(y) ocean_file_appendix=true; mc="$mc -y";;
461	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
462	(\?) printf "\n +++ unknown option $OPTARG \n"
463	printf "\n --> type \"$0 ?\" for available options \n"
464	locat=parameter;exit;;
465	esac
466	done
467
468
469	# EVTL. POSITIONSPARAMETER EINLESEN
470	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
471	shift OPTIND-1
472
473
474	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
475	if [[ "$1" = "?" ]]
476	then
477	(printf "\n *** mrun can be called as follows:\n"
478	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. <modus>\n"
479	printf "\n Description of available options:\n"
480	printf "\n Option Description Default-Value"
481	printf "\n -a base name of input files equiv. -d"
482	printf "\n -A no archiving when using file-attribute fl"
483	printf "\n -b batch-job on local machine ---"
484	printf "\n -B do not delete temporary directory at end ---"
485	printf "\n -c configuration file .mrun.config"
486	printf "\n -d base name of files attached to program test"
487	printf "\n -D preprocessor(cpp)-directives \"\" "
488	printf "\n -F create remote job file only ---"
489	printf "\n -h execution host $localhost_realname"
490	printf "\n -i INPUT control list \"\" "
491	printf "\n -I archiving errors of previous batch-jobs"
492	printf "\n will be ignored"
493	printf "\n -k keep data from previous run"
494	printf "\n -K additional conditions for controling"
495	printf "\n usage of conditional code and"
496	printf "\n env-variables in configuration file \"\" "
497	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
498	printf "\n -M Makefile name Makefile"
499	printf "\n -n node usage (shared/not_shared) depending on -h"
500	printf "\n -o OUTPUT control list \"\" "
501	printf "\n -O use OpenMP ---"
502	printf "\n -p software package list \"\" "
503	printf "\n -q queue \"$queue\" "
504	printf "\n -r run control list (combines -i -o) \"\" "
505	printf "\n -s filenames of routines to be compiled \"\" "
506	printf "\n must end with .f, .f90, .F, or .c !"
507	printf "\n use \"..\" for more than one file and wildcards"
508	printf "\n -s TEST compiles all files with w-permit"
509	printf "\n -S config file interpreted by shellscript ---"
510	printf "\n -t allowed cpu-time in seconds (batch) 0"
511	printf "\n -T tasks per node depending on -h"
512	printf "\n -u username on remote machine \"\" "
513	printf "\n -v no prompt for confirmation ---"
514	printf "\n -x tracing of mrun for debug purposes ---"
515	printf "\n -X # of processors (on parallel machines) 1"
516	printf "\n -y add appendix \"_O\" to all local output"
517	printf "\n files (ocean precursor runs followed by"
518	printf "\n coupled atmosphere-ocean runs) ---"
519	printf "\n -Y run coupled model, \"#1 #2\" with"
520	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
521	printf "\n "
522	printf "\n Possible values of positional parameter <modus>:"
523	printf "\n \"?\" - this outline \n\n") \| more
524	exit
525	elif [[ "$1" != "" ]]
526	then
527	printf "\n +++ positional parameter $1 unknown \n"
528	locat=parameter; exit
529	fi
530
531
532
533	# KURZE STARTMELDUNG
534	printf "\n*** $version "
535	printf "\n will be executed. Please wait ..."
536
537
538
539	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
540	if [[ ! -f $config_file ]]
541	then
542	printf "\n\n +++ configuration file: "
543	printf "\n $config_file"
544	printf "\n does not exist"
545	locat=connect; exit
546	fi
547
548
549	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
550	line=""
551	grep "%host_identifier" $config_file > tmp_mrun
552	while read line
553	do
554	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
555	then
556	HOSTNAME=`echo $line \| cut -d" " -s -f2`
557	host_identifier=`echo $line \| cut -d" " -s -f3`
558	if [[ $localhost_realname = $HOSTNAME ]]
559	then
560	localhost=$host_identifier
561	break
562	fi
563	fi
564	done < tmp_mrun
565
566	if [[ "$localhost" = "" ]]
567	then
568	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
569	printf "\n for local host \"$localhost_realname\"."
570	printf "\n Please add line"
571	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
572	printf "\n to the configuration file."
573	locat=localhost; exit
574	fi
575
576
577	# HOSTSPEZIFISCHE VARIABLEN SETZEN
578	case $localhost_realname in
579	(breg-en0\|berni-en0) archive_system=tivoli;;
580	(cs*) archive_system=ut;;
581	(fimm.bccs.uib.no) fimm=true;;
582	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
583	(hreg-en0\|hanni-en0) archive_system=tivoli;;
584	(scirocco) scirocco=true;;
585	esac
586
587
588
589	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
590	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
591	[[ "$afname" = "" ]] && afname=$fname
592
593
594	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
595	if [[ "$run_mode" != "" ]]
596	then
597	input_list="$input_list $run_mode"
598	output_list="$output_list $run_mode"
599	fi
600
601
602	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
603	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
604	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
605	# STARTET)
606	if [[ "$fromhost" = "" ]]
607	then
608	fromhost=$localhost
609	fi
610
611
612	# PRUEFEN, OB MRUN NUR TESTWEISE AUF DER LOKALEN MASCHINE KOMPILIEREN SOLL
613	if [[ "$source_list" = LOCAL_COMPILE_TEST ]]
614	then
615	source_list=TEST
616	local_compile=true
617	host=$localhost
618	fi
619
620
621	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
622	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
623	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
624	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
625	if [[ -n $host && "$host" != $localhost ]]
626	then
627	do_batch=true
628	do_remote=true
629	case $host in
630	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|nech\|necriam\|lcsgib\|lcsgih\|lctit\|unics\|lcxt4) true;;
631	(*) printf "\n"
632	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
633	printf "\n is not available"
634	locat=nqs; (( iec = 0 )); exit;;
635	esac
636	else
637	host=$localhost
638	fi
639
640
641	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
642	if [[ -n $additional_conditions ]]
643	then
644	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
645	cond1=`echo $additional_conditions \| cut -d" " -f1`
646	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
647	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
648	if [[ -n $dummy ]]
649	then
650	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
651	locat=options; exit
652	fi
653	fi
654
655
656	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
657	if [[ $run_coupled_model = true ]]
658	then
659
660	if [[ -n $coupled_dist ]]
661	then
662
663	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
664	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
665
666	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
667	then
668
669	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
670	printf "\n PEs (total) : $numprocs"
671	printf "\n PEs (atmosphere): $numprocs_atmos"
672	printf "\n PEs (ocean) : $numprocs_ocean"
673	locat=coupling; exit
674
675	# REARRANGING BECAUSE CURRENTLY ONLY 1:1 TOPOLOGIES ARE SUPPORTED
676	# THIS SHOULD BE REMOVED IN FUTURE
677	elif (( $numprocs_ocean != $numprocs_atmos ))
678	then
679
680	printf "\n +++ currently only 1:1 topologies are supported"
681	printf "\n PEs (total) : $numprocs"
682	printf "\n PEs (atmosphere): $numprocs_atmos"
683	printf "\n PEs (ocean) : $numprocs_ocean"
684	(( numprocs_atmos = $numprocs / 2 ))
685	(( numprocs_ocean = $numprocs / 2 ))
686	printf "\n +++ rearranged topology to $numprocs_atmos:$numprocs_ocean"
687
688	fi
689
690	else
691
692	(( numprocs_ocean = $numprocs / 2 ))
693	(( numprocs_atmos = $numprocs / 2 ))
694
695	fi
696	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
697
698	# GET coupled_mode FROM THE CONFIG FILE
699	line=""
700	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
701	while read line
702	do
703	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && ( $(echo $line \| cut -d" " -s -f4) = $cond1 \|\| $(echo $line \| cut -d" " -s -f4) = $cond2 ) ]]
704	then
705	coupled_mode="mpi2"
706	fi
707	done < tmp_mrun
708
709	fi
710
711
712	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
713	# ARCHIVIERUNG FEHLGESCHLAGEN IST
714	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
715	then
716	if [[ $ignore_archive_error = false ]]
717	then
718	printf "\n +++ data archiving of previous run failed"
719	printf "\n see directory \~/job_queue on remote machine"
720	locat=archive; exit
721	else
722	printf "\n +++ warning: data archiving in a previous run failed"
723	printf "\n MRUN continues, trying to get backup copy"
724	fi
725	fi
726
727
728
729	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
730	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
731	if [[ "$read_from_config" = false ]]
732	then
733
734	[[ $silent = false ]] && printf "\n Reading the configuration file... "
735	while read zeile
736	do
737	[[ $silent = false ]] && printf "."
738
739
740	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
741	# ERSETZEN
742	eval zeile=\"$zeile\"
743
744
745	# INTERPRETATION DER ZEILE
746	if [[ "$(echo $zeile)" = "" ]]
747	then
748	# LEERZEILE, KEINE AKTION
749	continue
750
751	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
752	then
753
754	# ZEILE IST KOMMENTARZEILE
755	true
756
757	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
758	then
759
760	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
761	zeile=$(echo $zeile \| cut -c2-)
762	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
763	var=`echo $zeile \| cut -d" " -f1`
764	value=`echo $zeile \| cut -d" " -s -f2`
765	for_host=`echo $zeile \| cut -d" " -s -f3`
766	for_cond1=`echo $zeile \| cut -d" " -s -f4`
767	for_cond2=`echo $zeile \| cut -d" " -s -f5`
768
769	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
770	then
771
772	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
773	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
774	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
775
776
777	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
778	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
779	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
780	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
781	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
782	# KONFIGURATIONSDATEI
783	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
784	then
785	eval $var=\$value
786
787	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
788	if [[ $do_trace = true ]]
789	then
790	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
791	fi
792	fi
793
794	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
795	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
796	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
797	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
798	if [[ $var = host ]]
799	then
800	if [[ -n $host && "$host" != $localhost ]]
801	then
802	do_batch=true
803	do_remote=true
804	case $host in
805	(ibm\|ibms\|ibmy\|lcsgib\|lcsgih\|lctit\|nech\|necriam\|unics\|lcxt4) true;;
806	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
807	printf "\n is not available"
808	locat=nqs; exit;;
809	esac
810	else
811	host=$localhost
812	fi
813	fi
814
815	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
816	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
817	# DEN PROGRAMMEN BENOETIGT WERDEN
818	export $var
819	fi
820
821
822
823
824	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
825	then
826
827	# ZEILE DEFINIERT ERROR-KOMMANDO
828	(( iec = iec + 1 ))
829	zeile=$(echo $zeile \| cut -c4-)
830	err_command[$iec]="$zeile"
831
832	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
833	then
834
835	# ZEILE DEFINIERT INPUT-KOMMANDO
836	(( iic = iic + 1 ))
837	zeile=$(echo $zeile \| cut -c4-)
838	in_command[$iic]="$zeile"
839
840	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
841	then
842
843	# ZEILE DEFINIERT OUTPUT-KOMMANDO
844	(( ioc = ioc + 1 ))
845	zeile=$(echo $zeile \| cut -c4-)
846	out_command[$ioc]="$zeile"
847
848	else
849
850	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
851	# s2a: in/out - Feld
852	# s2b: loc - Feld (optional)
853	# s2c: tr/ar - Feld (optional)
854	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
855	s1=`echo $zeile \| cut -d" " -f1`
856	s2=`echo $zeile \| cut -d" " -s -f2`
857	s2a=$(echo $s2 \| cut -d":" -f1)
858	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
859	then
860	s2b=""
861	s2c=""
862	else
863	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
864	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
865	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
866	fi
867	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
868	s3=`echo $zeile \| cut -d" " -f3`
869	s4=`echo $zeile \| cut -d" " -s -f4`
870	s5=`echo $zeile \| cut -d" " -s -f5`
871	s6=`echo $zeile \| cut -d" " -s -f6`
872
873
874	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
875	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
876	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
877	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
878	# HANDEN SEIN MUSS (D.H. s2b = loc)
879	IFSALT="$IFS"; IFS="$IFS:"
880	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
881	then
882	found=false
883	for actual in $input_list
884	do
885	for formal in $s3
886	do
887	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
888	done
889	done
890	if [[ $found = true ]]
891	then
892	(( iin = iin + 1 ))
893	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
894	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
895	extin[$iin]=$s6
896	fi
897	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
898	then
899	found=false
900	for actual in $output_list
901	do
902	for formal in $s3
903	do
904	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
905	done
906	done
907	if [[ $found = true ]]
908	then
909	(( iout = iout + 1 ))
910	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
911	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
912	fi
913	elif [[ "$s2a" != in && "$s2a" != out ]]
914	then
915	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
916	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
917	locat=connect; exit
918	fi
919	IFS="$IFSALT"
920	fi
921	done < $config_file
922
923	else
924
925
926	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
927	[[ $silent = false ]] && printf "..."
928	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
929	export interpreted_config_file=.icf.$RANDOM
930
931
932
933	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
934	# VERFUEGUNG STELLEN
935	cat > .mrun_environment << %%END%%
936	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
937	config_file = '$config_file', do_remote = '$do_remote',
938	do_trace = '$do_trace', host = '$host',
939	input_list = '$input_list', icf = '$interpreted_config_file',
940	localhost = '$localhost', output_list = '$output_list' /
941
942	%%END%%
943
944	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
945	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
946	mrun_memory=$memory
947	mrun_group_number=$group_number
948	mrun_cpumax=$cpumax
949	mrun_numprocs=$numprocs
950
951	if [[ $localhost_realname = "sx-fep" ]]
952	then
953	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
954	else
955	interpret_config.x
956	fi
957	rm .mrun_environment
958
959
960	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
961	chmod u+x $interpreted_config_file
962	export PATH=$PATH:.
963	. $interpreted_config_file
964	rm $interpreted_config_file
965
966
967	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
968	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
969	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
970	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
971	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
972
973	fi
974
975
976	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
977	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
978	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
979	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
980	if [[ "$SOURCES_COMPLETE" = "" ]]
981	then
982
983	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
984	# VEREINBART WURDE
985	source_path=""
986	line=""
987	grep "%source_path" $config_file > tmp_mrun
988	while read line
989	do
990	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
991	then
992	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
993	then
994	global_source_path=`echo $line \| cut -d" " -f2`
995	fi
996	fi
997	done < tmp_mrun
998
999	line=""
1000	found=false
1001	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
1002	while read line
1003	do
1004	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1005	then
1006	if [[ $found = true ]]
1007	then
1008	printf "\n\n +++ more than one source path found in configuration file"
1009	printf "\n for local host \"$localhost\" "
1010	locat=source_path; exit
1011	fi
1012	source_path=`echo $line \| cut -d" " -f2`
1013	found=true
1014	fi
1015	done < tmp_mrun
1016	rm tmp_mrun
1017
1018	if [[ "$source_path" = "" ]]
1019	then
1020	if [[ "$global_source_path" != "" ]]
1021	then
1022	source_path=$global_source_path
1023	else
1024	printf "\n\n +++ no source path found in configuration file"
1025	printf "\n for local host \"$localhost\" "
1026	locat=source_path; exit
1027	fi
1028	fi
1029	eval source_path=$source_path
1030
1031	if [[ ! -d $source_path ]]
1032	then
1033	printf "\n\n +++ source path \"$source_path\" on local host"
1034	printf "\n \"$localhost\" does not exist"
1035	locat=source_path; exit
1036	fi
1037
1038	fi
1039
1040
1041	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
1042	# DURCH OPTION -G MITGETEILT)
1043	if [[ "$global_revision" = "" ]]
1044	then
1045	global_revision=`svnversion $source_path 2>/dev/null`
1046	global_revision="Rev: $global_revision"
1047	fi
1048
1049
1050	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
1051	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
1052	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
1053	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
1054	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
1055	if [[ -n $host && "$host" != $localhost ]]
1056	then
1057	do_batch=true
1058	do_remote=true
1059	case $host in
1060	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|lcsgib\|lcsgih\|lctit\|nech\|necriam\|unics\|lcxt4) true;;
1061	(*) printf "\n"
1062	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
1063	printf "\n is not available"
1064	locat=nqs; (( iec = 0 )); exit;;
1065	esac
1066	else
1067	host=$localhost
1068	fi
1069
1070
1071	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
1072	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1073	then
1074
1075	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
1076	if [[ ! -n $numprocs ]]
1077	then
1078	printf "\n"
1079	printf "\n +++ option \"-K parallel\" requires additional specification"
1080	printf "\n of the number of processors to be used by"
1081	printf "\n mrun-option \"-X\" or by environment-variable"
1082	printf "\n \"numprocs\" in the configuration file"
1083	locat=numprocs; (( iec = 0 )); exit
1084	fi
1085
1086	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
1087	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
1088	# GESAMTPROZESSORANZAHL IST
1089	if [[ $host = nech \|\| $host = necriam \|\| $host = ibmh \|\| $host = ibmb \|\| $host = ibms ]]
1090	then
1091	[[ "$tasks_per_node" = "" ]] && tasks_per_node=6
1092	(( ival = $tasks_per_node ))
1093	(( pes = numprocs ))
1094	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1095	# then
1096	# (( pes = pes - 1 ))
1097	# fi
1098	(( ii = pes / ival ))
1099	if (( pes - ii * ival > 0 ))
1100	then
1101	printf "\n"
1102	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1103	printf "\n divisor of the total number of processors (option \"-X\")"
1104	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1105	locat=tasks_per_node; (( iec = 0 )); exit
1106	fi
1107	fi
1108
1109	# IBMY HAT NUR EINEN KNOTEN
1110	if [[ $host = ibmy ]]
1111	then
1112	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1113	then
1114	printf "\n"
1115	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1116	printf "\n total number of processors (option \"-X\")"
1117	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1118	locat=tasks_per_node; (( iec = 0 )); exit
1119	fi
1120	fi
1121
1122	# FALLS OPENMP PARALLELISIERUNG VERWENDET WERDEN SOLL, ANZAHL VON THREADS
1123	# SETZEN UND ZAHL DER TASKS PRO KNOTEN AUF 1 SETZEN
1124	if [[ $use_openmp = true ]]
1125	then
1126	threads_per_task=$tasks_per_node
1127	tasks_per_node=1
1128	fi
1129	OOPT="-O $threads_per_task"
1130	TOPT="-T $tasks_per_node"
1131
1132	# GESAMTZAHL DER KNOTEN BESTIMMEN
1133	if [[ "$tasks_per_node" != "" ]]
1134	then
1135	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1136	fi
1137
1138	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1139	# SETZEN
1140	if [[ $node_usage = default ]]
1141	then
1142	if [[ $host = ibms ]]
1143	then
1144	node_usage=shared
1145	elif [[ $host = lctit ]]
1146	then
1147	node_usage=RAM64GB
1148	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1149	then
1150	node_usage=singlejob
1151	else
1152	node_usage=not_shared
1153	fi
1154	fi
1155
1156	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != RAM64GB ]]
1157	then
1158	printf "\n"
1159	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1160	printf "\n \"shared\" or \"not_shared\""
1161	locat=tasks_per_node; (( iec = 0 )); exit
1162	fi
1163
1164	fi
1165
1166	# PRUEFEN, OB HOSTFILE EXISTIERT
1167	if [[ -n $hostfile ]]
1168	then
1169	if [[ ! -f $hostfile ]]
1170	then
1171	printf "\n"
1172	printf "\n +++ hostfile \"$hostfile\" does not exist"
1173	locat=hostfile; exit
1174	fi
1175	fi
1176
1177	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1178	if [[ $host = ibmy && $do_remote = false ]]
1179	then
1180	if [[ ! -f $HOME/.rhosts ]]
1181	then
1182	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1183	printf "\n\n *** file:"
1184	printf "\n $HOME/.rhosts"
1185	printf "\n was created\n"
1186	fi
1187	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1188	then
1189	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1190	printf "\n\n *** file:"
1191	printf "\n $HOME/.rhosts"
1192	printf "\n was extended by the name of the current host\n"
1193	fi
1194	fi
1195
1196
1197
1198	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1199	if [[ $queue = none ]]
1200	then
1201	case $host in
1202	(ibmb) if [[ $node_usage = shared ]]
1203	then
1204	queue=cshare
1205	else
1206	queue=csolo
1207	fi;;
1208	(ibmh) if [[ $node_usage = shared ]]
1209	then
1210	queue=cshare
1211	else
1212	queue=csolo
1213	fi;;
1214	(ibmy) queue=parallel;;
1215	(lcsgib) queue=bigq;;
1216	(lcsgih) queue=bigq;;
1217	(lctit) queue=RAM64GB;;
1218	(nech) queue=none;;
1219	(necriam) queue=SP;;
1220	(unics) queue=unics;;
1221	esac
1222	fi
1223
1224
1225	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1226	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1227	# ERMITTELN
1228	(( i = 0 ))
1229	while (( i < iin ))
1230	do
1231	(( i = i + 1 ))
1232	(( maxcycle = 0 ))
1233
1234	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1235	if [[ "${actionin[$i]}" = di ]]
1236	then
1237	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1238	# REM-MASCHINE AUSWERTEN
1239	eval filename=${pathin[$i]}/${endin[$i]}
1240	else
1241	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1242	# REM-MASCHINE AUSWERTEN
1243	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1244	fi
1245
1246	# PRUEFEN AUF VORHANDENSEIN
1247	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1248	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1249	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1250	then
1251	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1252	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1253	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1254	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1255	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1256	if [[ "${transin[$i]}" != "locopt" ]]
1257	then
1258	printf "\n\n +++ INPUT-file: "
1259	if [[ "${extin[$i]}" = "" ]]
1260	then
1261	printf "\n $filename"
1262	else
1263	printf "\n $filename.${extin[$i]}"
1264	fi
1265	printf "\n does not exist\n"
1266	locat=input; exit
1267	else
1268	transin[$i]="unavailable"
1269	fi
1270	else
1271
1272	# ZYKLUSNUMMER FESTSTELLEN
1273	ls -1 -d $filename > filelist 2>/dev/null
1274	ls -1 -d $filename.* >> filelist 2>/dev/null
1275	while read zeile
1276	do
1277	cycle=$(print $zeile \| cut -f2 -d".")
1278	if [[ "$cycle" = "$zeile" ]]
1279	then
1280	(( icycle = 0 ))
1281	elif [[ "$cycle" = "${extin[$i]}" ]]
1282	then
1283	(( icycle = 0 ))
1284	else
1285	(( icycle = $cycle ))
1286	fi
1287	if (( icycle > maxcycle ))
1288	then
1289	(( maxcycle = icycle ))
1290	file_to_be_used=$zeile
1291	fi
1292	done <filelist
1293	rm filelist
1294
1295	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1296	if (( maxcycle > 0 ))
1297	then
1298	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1299	then
1300	filename=${filename}.$maxcycle.${extin[$i]}
1301	else
1302	filename=${filename}.$maxcycle
1303	fi
1304	else
1305	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1306	then
1307	filename=${filename}.${extin[$i]}
1308	fi
1309	fi
1310
1311	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1312	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1313	absnamein[$i]=$filename
1314	if (( maxcycle > 0 ))
1315	then
1316	if [[ "${actionin[$i]}" = di ]]
1317	then
1318	frelin[$i]=${endin[$i]}.$maxcycle
1319	else
1320	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1321	fi
1322	else
1323	if [[ "${actionin[$i]}" = di ]]
1324	then
1325	frelin[$i]=${endin[$i]}
1326	else
1327	frelin[$i]=${afname}${endin[$i]}
1328	fi
1329	fi
1330
1331	fi
1332	done
1333
1334
1335	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1336	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1337	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1338	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1339	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1340	(( i = 0 ))
1341	while (( i < iout ))
1342	do
1343	(( i = i + 1 ))
1344	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1345	then
1346	if [[ "${actionout[$i]}" = tr ]]
1347	then
1348	actionout[$i]=""
1349	elif [[ "${actionout[$i]}" = trpe ]]
1350	then
1351	actionout[$i]=pe
1352	elif [[ "${actionout[$i]}" = tra ]]
1353	then
1354	actionout[$i]=a
1355	fi
1356	(( maxcycle = 0 ))
1357	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1358	eval catalogname=${pathout[$i]}
1359	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1360	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1361	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1362	then
1363
1364	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1365	if cat /dev/null > $filename
1366	then
1367	rm $filename
1368	else
1369
1370	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1371	if [[ ! -d $catalogname ]]
1372	then
1373	if mkdir -p $catalogname
1374	then
1375	printf "\n\n *** directory:"
1376	printf "\n $catalogname"
1377	printf "\n was created\n"
1378	else
1379	printf "\n\n +++ OUTPUT-file:"
1380	printf "\n $filename"
1381	printf "\n cannot be created, because directory does not exist"
1382	printf "\n and cannot be created either"
1383	printf "\n"
1384	locat=output ; exit
1385	fi 2>/dev/null
1386	else
1387	printf "\n\n +++ OUTPUT-file:"
1388	printf "\n $filename"
1389	printf "\n cannot be created, although directory exists"
1390	printf "\n"
1391	locat=output ; exit
1392	fi
1393	fi 2>/dev/null
1394	else
1395
1396	# ZYKLUSNUMMER FESTSTELLEN
1397	ls -1 -d $filename > filelist 2>/dev/null
1398	ls -1 -d $filename.* >> filelist 2>/dev/null
1399	while read zeile
1400	do
1401	cycle=$(print $zeile \| cut -f2 -d".")
1402	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1403	then
1404	(( icycle = 1 ))
1405	else
1406	(( icycle = $cycle + 1 ))
1407	fi
1408	if (( icycle > maxcycle ))
1409	then
1410	(( maxcycle = icycle ))
1411	fi
1412	done <filelist
1413	rm filelist
1414	fi
1415
1416	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1417	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1418	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1419	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1420	if [[ "${actionout[$i]}" != a ]]
1421	then
1422	if (( maxcycle > 0 ))
1423	then
1424	filename=${filename}.$maxcycle
1425	if cat /dev/null > $filename
1426	then
1427	rm $filename
1428	else
1429	printf "\n +++ OUTPUT-file:"
1430	printf "\n $filename"
1431	printf "\n cannot be created"
1432	locat=output ; exit
1433	fi
1434	fi
1435	else
1436	(( maxcycle = maxcycle - 1 ))
1437	if (( maxcycle > 0 ))
1438	then
1439	filename=${filename}.$maxcycle
1440	fi
1441	fi
1442
1443	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1444	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1445	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1446	pathout[$i]=$filename
1447	if (( maxcycle > 0 ))
1448	then
1449	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1450	else
1451	frelout[$i]=${fname}${endout[$i]}
1452	fi
1453
1454	fi
1455	done
1456
1457
1458	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1459	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1460	then
1461	if [[ "$dvr_inc" = "" ]]
1462	then
1463	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1464	printf "\n This is required for the dvrp_graphics package.\n"
1465	locat=dvr; exit
1466	fi
1467	if [[ "$dvr_lib" = "" ]]
1468	then
1469	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1470	printf "\n This is required for the dvrp_graphics package.\n"
1471	locat=dvr; exit
1472	fi
1473	fi
1474
1475
1476	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1477	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1478	# UEBERSETZT ZU WERDEN)
1479	if [[ "$mainprog" = "" && "$executable" = "" ]]
1480	then
1481	printf "\n +++ neither main program nor executable defined"
1482	locat=source; exit
1483	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1484	then
1485	printf "\n +++ main program as well as executable defined"
1486	locat=source; exit
1487	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1488	then
1489	do_compile=false
1490	fi
1491
1492
1493	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1494	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1495	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1496	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1497	then
1498	rm -rf SOURCES_FOR_RUN_$fname
1499	mkdir SOURCES_FOR_RUN_$fname
1500	fi
1501
1502
1503	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1504	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1505	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1506	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1507	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1508	then
1509
1510	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1511	[[ "$source_list" = WP ]] && source_list=WRITE_PERMIT
1512
1513
1514	# EVTL. ZU UEBERSETZENDE PROGRAMMTEILE DADURCH BESTIMMEN, DASS GEPRUEFT
1515	# WIRD, WELCHE DATEIEN WRITE-PERMIT BESITZEN (DATEIEN SOLLTEN DESHALB
1516	# UNTER RCS-KONTROLLE STEHEN). MIT DER VARIABLEN EXCLUDE KOENNEN
1517	# BESTIMMTE DATEIEN GRUNDSAETZLICH VON DER UEBERSETZUNG AUSGESCHLOSSEN
1518	# WERDEN. DIES IST NUR BEI MANUELLEM START VON MRUN DURCH DEN BENUTZER
1519	# MOEGLICH, DA BEI AUTOMATISCHEN RESTARTS TEST DURCH DIE TATSAECHLICH
1520	# ZU UBERSETZENDEN DATEIEN ERSETZT IST.
1521	# ALLE ERMITTELTEN DATEIEN WERDEN IM VERZEICHNIS SOURCES_FOR_RUN_...
1522	# GESAMMELT
1523	if [[ "$source_list" = WRITE_PERMIT ]]
1524	then
1525
1526	source_list=""
1527	cd $source_path
1528
1529
1530	# ALLE MOEGLICHEN QUELLCODEDATEIEN AUFLISTEN
1531	Names=$(ls -1 *.f90 2>&1)
1532	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && Filenames="$Names"
1533	Names=$(ls -1 *.F90 2>&1)
1534	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && Filenames="$Filenames $Names"
1535	Names=$(ls -1 *.F 2>&1)
1536	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && Filenames="$Filenames $Names"
1537	Names=$(ls -1 *.f 2>&1)
1538	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && Filenames="$Filenames $Names"
1539	Names=$(ls -1 *.c 2>&1)
1540	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && Filenames="$Filenames $Names"
1541
1542
1543	# DATEIEN MIT WRITE-PERMIT NACH SOURCES_FOR_RUN_... KOPIEREN
1544	for dateiname in $Filenames
1545	do
1546	if [[ -w $dateiname ]]
1547	then
1548	if [[ "$exclude" = "" \|\| $(echo $exclude \| grep -c $dateiname) = 0 ]]
1549	then
1550	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1551	source_list=$source_list"$dateiname "
1552	fi
1553	fi
1554	done
1555
1556	cd - > /dev/null
1557
1558
1559	elif [[ "$source_list" = LOCALLY_MODIFIED ]]
1560	then
1561
1562	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1563	source_list=""
1564	cd $source_path
1565
1566
1567	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1568	if [[ ! -d .svn ]]
1569	then
1570	printf "\n\n +++ source directory"
1571	printf "\n \"$source_path\" "
1572	printf "\n is not under control of \"subversion\"."
1573	printf "\n Please do not use mrun-option \"-s LOCALLY MODIFIED\"\n"
1574	fi
1575
1576
1577	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1578	Filenames=""
1579	svn status > tmp_mrun
1580	while read line
1581	do
1582	firstc=`echo $line \| cut -c1`
1583	if [[ $firstc = M \|\| $firstc = "?" ]]
1584	then
1585	Name=`echo "$line" \| cut -c8-`
1586	extension=`echo $Name \| cut -d. -f2`
1587	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1588	then
1589	Filenames="$Filenames "$Name
1590	fi
1591	fi
1592	done < tmp_mrun
1593
1594
1595	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1596	for dateiname in $Filenames
1597	do
1598	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1599	source_list=$source_list"$dateiname "
1600	done
1601
1602	cd - > /dev/null
1603
1604
1605	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1606	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1607	# VORHANDEN
1608	elif [[ "$source_list" != "" && $restart_run != true ]]
1609	then
1610
1611	cd $source_path
1612
1613	for filename in $source_list
1614	do
1615
1616	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1617	if [[ $(print $filename \| grep -c "/") != 0 ]]
1618	then
1619	printf "\n +++ source code file: $filename"
1620	printf "\n must not contain (\"/\") "
1621	locat=source; exit
1622	fi
1623
1624	if [[ ! -f $filename ]]
1625	then
1626	printf "\n +++ source code file: $filename"
1627	printf "\n does not exist"
1628	locat=source; exit
1629	else
1630	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1631	fi
1632
1633	done
1634
1635	cd - > /dev/null
1636
1637	fi
1638
1639
1640	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1641	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1642	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1643	if [[ $restart_run != true ]]
1644	then
1645
1646	if [[ ! -f "$source_path/$mainprog" ]]
1647	then
1648	printf "\n\n +++ main program: $mainprog"
1649	printf "\n does not exist in source directory"
1650	printf "\n \"$source_path\"\n"
1651	locat=source; exit
1652	else
1653	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1654	then
1655	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1656	source_list=${mainprog}" $source_list"
1657	fi
1658	fi
1659	fi
1660
1661
1662	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1663	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1664	if [[ "$restart_run" != true ]]
1665	then
1666	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1667	if [[ ! -f $makefile ]]
1668	then
1669	printf "\n +++ file \"$makefile\" does not exist"
1670	locat=make; exit
1671	else
1672	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1673	fi
1674	fi
1675
1676
1677	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1678	if [[ $restart_run != true && "$add_source_path" != "" ]]
1679	then
1680
1681	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1682	if [[ ! -d $add_source_path ]]
1683	then
1684	printf "\n\n +++ WARNING: additional source code directory"
1685	printf "\n \"$add_source_path\" "
1686	printf "\n does not exist or is not a directory."
1687	printf "\n No source code will be used from this directory!\n"
1688	add_source_path=""
1689	sleep 3
1690	else
1691
1692	cd $add_source_path
1693	found=false
1694
1695	Names=$(ls -1 *.f90 2>&1)
1696	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1697	Names=$(ls -1 *.F90 2>&1)
1698	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1699	Names=$(ls -1 *.F 2>&1)
1700	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1701	Names=$(ls -1 *.f 2>&1)
1702	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1703	Names=$(ls -1 *.c 2>&1)
1704	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1705
1706	cd - > /dev/null
1707	cd SOURCES_FOR_RUN_$fname
1708
1709	# COPY MAKEFILE IF EXISTING
1710	if [[ -f $add_source_path/Makefile ]]
1711	then
1712	printf "\n\n *** user Makefile from directory"
1713	printf "\n \"$add_source_path\" is used \n"
1714	sleep 1
1715	cp $add_source_path/Makefile .
1716	fi
1717
1718	for dateiname in $AddFilenames
1719	do
1720	if [[ -f $dateiname ]]
1721	then
1722	printf "\n +++ source code file \"$dateiname\" found in additional"
1723	printf "\n source code directory \"$add_source_path\" "
1724	printf "\n but was also given with option \"-s\" which means that it should be taken"
1725	printf "\n from directory \"$source_path\"."
1726	locat=source; exit
1727	fi
1728
1729	cp $add_source_path/$dateiname .
1730	source_list="$source_list $dateiname"
1731
1732	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1733	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1734	then
1735	printf "\n\n +++ user file \"$dateiname\" "
1736	printf "\n is not listed in Makefile \n"
1737	locat=source; exit
1738	else
1739
1740	# Default User-Interface von der Liste entfernen, falls Datei
1741	# ein User-Interface enthaelt
1742	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1743	# then
1744	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1745	# then
1746	# rm -rf user_interface.f90
1747	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1748	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1749	# printf "\n since a user-interface is found in file"
1750	# printf "\n \"$add_source_path/$dateiname\" \n"
1751	# sleep 3
1752	# else
1753	if [[ $found = false ]]
1754	then
1755	found=true
1756	printf "\n\n *** following user file(s) added to the"
1757	printf " files to be translated:\n "
1758	fi
1759	printf "$dateiname "
1760	sleep 0.5
1761	fi
1762	done
1763	[[ $found = true ]] && printf "\n"
1764	cd - > /dev/null
1765	fi
1766	fi
1767
1768
1769	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1770	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1771	if [[ $restart_run != true && -n $package_list ]]
1772	then
1773
1774	cd $source_path
1775
1776	for package in $package_list
1777	do
1778
1779	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1780
1781	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1782	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1783	# LIEFERT
1784	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1785
1786
1787	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1788	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1789	for source_list_name in $package_source_list
1790	do
1791	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1792	then
1793
1794	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1795	ending=`echo $source_list_name \| cut -f2 -d.`
1796	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1797	then
1798	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1799	source_list="$source_list $source_list_name"
1800	fi
1801	fi
1802	done
1803	done
1804
1805	cd - > /dev/null
1806	fi
1807
1808
1809	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1810	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1811	# if [[ "$restart_run" != true ]]
1812	# then
1813	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1814	# if [[ ! -f $makefile ]]
1815	# then
1816	# printf "\n +++ file \"$makefile\" does not exist"
1817	# locat=make; exit
1818	# else
1819	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1820	# fi
1821	# fi
1822
1823	fi # do_compile=true
1824
1825
1826	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1827	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1828	if [[ $do_compile = true ]]
1829	then
1830
1831	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1832	# ZUSAMMENSETZEN
1833	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1834	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1835	then
1836	cpp_options="${cpp_options},-D__ibm=__ibm"
1837	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1838	then
1839	cpp_options="$cpp_options -D__nec"
1840	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1841	then
1842	cpp_options="$cpp_options -D__lc"
1843	else
1844	cpp_options="$cpp_options -D__$localhost"
1845	fi
1846
1847	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1848	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1849	then
1850	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1851	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1852	else
1853	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1854	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1855	fi
1856
1857	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1858	if [[ -n $package_list ]]
1859	then
1860	for package in $package_list
1861	do
1862	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1863	then
1864	if [[ $package != "dvrp_graphics+1PE" ]]
1865	then
1866	cpp_options="${cpp_options},-D__$package=__$package"
1867	else
1868	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1869	export use_seperate_pe_for_dvrp_output=true
1870	fi
1871	else
1872	if [[ $package != "dvrp_graphics+1PE" ]]
1873	then
1874	cpp_options="$cpp_options -D__$package"
1875	else
1876	cpp_options="$cpp_options -D__dvrp_graphics"
1877	export use_seperate_pe_for_dvrp_output=true
1878	fi
1879	fi
1880	done
1881	fi
1882
1883	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1884	if [[ -n $cpp_opts ]]
1885	then
1886	for popts in $cpp_opts
1887	do
1888	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1889	then
1890	cpp_options="${cpp_options},-D__$popts=__$popts"
1891	else
1892	cpp_options="$cpp_options -D__$popts"
1893	fi
1894	done
1895	fi
1896
1897	else
1898
1899
1900	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1901	if [[ $do_remote = false ]]
1902	then
1903	if [[ ! -f $executable ]]
1904	then
1905	printf "\n +++ executable file: $executable"
1906	printf "\n does not exist"
1907	locat=executable; exit
1908	fi
1909	fi
1910	fi
1911
1912
1913	# JOBMODUS FESTSTELLEN
1914	if [[ "$ENVIRONMENT" = BATCH && $localhost != lctit \|\| "$QUEUE" != interactive && $localhost = lctit ]]
1915	then
1916	jobmo=BATCH
1917	else
1918	jobmo=INTERACTIVE
1919	fi
1920
1921
1922	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1923	# DURCH BENUTZER ANDERWEITIG VEREINBART
1924	if [[ "$compiler_name" = "" ]]
1925	then
1926
1927	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
1928	locat=compiler_name; exit
1929
1930	fi
1931
1932
1933	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
1934	[[ $localhost = necriam ]] && compiler_name=mpif90
1935
1936
1937
1938	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
1939	kennung=$RANDOM
1940	if [[ "$tmp_user_catalog" = "" ]]
1941	then
1942	if [[ $localhost = ibmb \|\| $localhost = ibmh ]]
1943	then
1944	tmp_user_catalog=$TMPDIR
1945	elif [[ $localhost = nech ]]
1946	then
1947	tmp_user_catalog=$WRKSHR
1948	else
1949	tmp_user_catalog=/tmp
1950	fi
1951	fi
1952	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
1953
1954
1955	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
1956	# BESTIMMEN
1957	if [[ "$tmp_data_catalog" = "" ]]
1958	then
1959	if [[ $localhost = ibmb \|\| $localhost = ibmh ]]
1960	then
1961	tmp_data_catalog=$WORK/mrun_restart_data
1962	elif [[ $localhost = nech ]]
1963	then
1964	tmp_data_catalog=$WRKSHR/mrun_restart_data
1965	else
1966	tmp_data_catalog=/tmp/mrun_restart_data
1967	fi
1968	fi
1969
1970
1971	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
1972	# ERSETZEN
1973	if [[ $do_remote = false && $do_compile = true ]]
1974	then
1975	eval fopts=\"$fopts\"
1976	eval lopts=\"$lopts\"
1977	fi
1978
1979
1980
1981	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
1982	fopts="$fopts $netcdf_inc $dvr_inc"
1983	lopts="$lopts $netcdf_lib $dvr_lib"
1984	ROPTS="$ropts"
1985	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxt4 ) && -n $numprocs ]]
1986	then
1987	XOPT="-X $numprocs"
1988	fi
1989
1990
1991
1992	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
1993	# GRAMM BENOETIGT
1994	done=false
1995	while [[ $done = false ]]
1996	do
1997	cputime=$cpumax
1998	if (( $cputime == 0 ))
1999	then
2000	if [[ $do_batch = true ]]
2001	then
2002	printf "\n +++ cpu-time is undefined"
2003	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
2004	printf "\n >>> "
2005	read cputime 1>/dev/null 2>&1
2006	else
2007	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
2008	fi
2009	else
2010	done=true
2011	fi
2012	cpumax=$cputime
2013	done
2014
2015	(( minuten = cputime / 60 ))
2016	(( sekunden = cputime - minuten * 60 ))
2017
2018
2019	# PRUEFEN DER KERNSPEICHERANFORDERUNG
2020	if [[ $do_batch = true ]]
2021	then
2022	done=false
2023	while [[ $done = false ]]
2024	do
2025	if (( memory == 0 ))
2026	then
2027	printf "\n +++ memory demand is undefined"
2028	printf "\n >>> Please type memory in MByte per process as INTEGER:"
2029	printf "\n >>> "
2030	read memory 1>/dev/null 2>&1
2031	else
2032	done=true
2033	fi
2034	done
2035	fi
2036
2037
2038	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
2039	if [[ $do_remote = true && -z $remote_username ]]
2040	then
2041	while [[ -z $remote_username ]]
2042	do
2043	printf "\n +++ username on remote host \"$host\" is undefined"
2044	printf "\n >>> Please type username:"
2045	printf "\n >>> "
2046	read remote_username
2047	done
2048	mc="$mc -u$remote_username"
2049	fi
2050
2051
2052	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
2053	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2054	then
2055	[[ "$mpilib" = "" ]] && export mpilib=mpt
2056	fi
2057
2058
2059
2060	###########################################################################
2061	# HEADER-AUSGABE
2062	###########################################################################
2063
2064
2065	calltime=$(date)
2066	printf "\n"
2067	# [[ $silent = false ]] && clear
2068	printf "#--------------------------------------------------------------# \n"
2069	printf "\| $version$calltime \| \n"
2070	printf "\| \| \n"
2071	spalte1="called on:"; spalte2=$localhost_realname
2072	printf "\| $spalte1$spalte2 \| \n"
2073	if [[ $local_compile = false ]]
2074	then
2075	if [[ $do_remote = true ]]
2076	then
2077	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2078	else
2079	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2080	fi
2081	else
2082	spalte1="compiling test only!"; spalte2=""
2083	fi
2084	printf "\| $spalte1$spalte2 \| \n"
2085	if [[ -n $numprocs ]]
2086	then
2087	spalte1="number of PEs:"; spalte2=$numprocs
2088	printf "\| $spalte1$spalte2 \| \n"
2089	fi
2090	if [[ -n $tasks_per_node ]]
2091	then
2092	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2093	printf "\| $spalte1$spalte2 \| \n"
2094	fi
2095	if [[ $threads_per_task != 1 ]]
2096	then
2097	spalte1="threads per task:"; spalte2="$threads_per_task"
2098	printf "\| $spalte1$spalte2 \| \n"
2099	fi
2100	printf "\| \| \n"
2101	if [[ $do_compile = true ]]
2102	then
2103	spalte1=cpp-directives:; spalte2=$cpp_options
2104	printf "\| $spalte1$spalte2 \| \n"
2105	zeile=$(echo "$cpp_options" \| cut -c41-)
2106	while [[ "$zeile" != "" ]]
2107	do
2108	spalte1=""
2109	spalte2=$zeile
2110	printf "\| $spalte1$spalte2 \| \n"
2111	zeile=$(echo "$zeile" \| cut -c41-)
2112	done
2113
2114	spalte1=compiler-options:; spalte2="$fopts"
2115	printf "\| $spalte1$spalte2 \| \n"
2116	zeile=$(echo "$fopts" \| cut -c41-)
2117	while [[ "$zeile" != "" ]]
2118	do
2119	spalte1=""
2120	spalte2=$zeile
2121	printf "\| $spalte1$spalte2 \| \n"
2122	zeile=$(echo "$zeile" \| cut -c41-)
2123	done
2124
2125	spalte1=linker-options:; spalte2=$lopts
2126	printf "\| $spalte1$spalte2 \| \n"
2127	zeile=$(echo "$lopts" \| cut -c41-)
2128	while [[ "$zeile" != "" ]]
2129	do
2130	spalte1=""
2131	spalte2=$zeile
2132	printf "\| $spalte1$spalte2 \| \n"
2133	zeile=$(echo "$zeile" \| cut -c41-)
2134	done
2135
2136	spalte1="main program":; spalte2=$mainprog
2137	printf "\| $spalte1$spalte2 \| \n"
2138	else
2139	spalte1=executable:; spalte2=$executable
2140	printf "\| $spalte1$spalte2 \| \n"
2141	fi
2142	printf "\| \| \n"
2143	spalte1="base name of files":; spalte2=$fname
2144	printf "\| $spalte1$spalte2 \| \n"
2145	if [[ $fname != $afname ]]
2146	then
2147	spalte1="base name of input files":; spalte2=$afname
2148	printf "\| $spalte1$spalte2 \| \n"
2149	fi
2150	spalte1="INPUT control list":; spalte2=$input_list
2151	printf "\| $spalte1$spalte2 \| \n"
2152	spalte1="OUTPUT control list":; spalte2=$output_list
2153	printf "\| $spalte1$spalte2 \| \n"
2154
2155	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2156	then
2157	spalte1="memory demand / PE":; spalte2="$memory MB"
2158	printf "\| $spalte1$spalte2 \| \n"
2159	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2160	printf "\| $spalte1$spalte2 \| \n"
2161	fi
2162
2163	if [[ $do_compile = true ]]
2164	then
2165	printf "\| \| \n"
2166	printf "\| Files to be compiled: \| \n"
2167	zeile=$source_list
2168	while [[ "$zeile" != "" ]]
2169	do
2170	spalte3=$zeile
2171	printf "\| $spalte3 \| \n"
2172	zeile=$(echo "$zeile" \| cut -c61-)
2173	done
2174	fi
2175	printf "#--------------------------------------------------------------#"
2176
2177
2178
2179	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2180	if [[ $do_trace = true ]]
2181	then
2182	(( i = 0 ))
2183	while (( i < iin ))
2184	do
2185	(( i = i + 1 ))
2186	if (( i == 1 ))
2187	then
2188	printf "\n\n >>> INPUT-file assignments:\n"
2189	fi
2190	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2191	done
2192	(( i = 0 ))
2193	while (( i < iout ))
2194	do
2195	(( i = i + 1 ))
2196	if (( i == 1 ))
2197	then
2198	printf "\n\n >>> OUTPUT-file assignments:\n"
2199	fi
2200	printf "\n ${localout[$i]} : ${pathout[$i]}"
2201	done
2202	(( i = 0 ))
2203	while (( i < iic ))
2204	do
2205	(( i = i + 1 ))
2206	if (( i == 1 ))
2207	then
2208	printf "\n\n >>> INPUT-commands:\n"
2209	fi
2210	printf "\n ${in_command[$i]}"
2211	done
2212	(( i = 0 ))
2213	while (( i < ioc ))
2214	do
2215	(( i = i + 1 ))
2216	if (( i == 1 ))
2217	then
2218	printf "\n\n >>> OUTPUT-commands:\n"
2219	fi
2220	printf "\n ${out_command[$i]}"
2221	done
2222	fi
2223
2224
2225	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2226	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2227	then
2228	antwort=dummy
2229	printf "\n\n"
2230	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2231	do
2232	printf " >>> everything o.k. (y/n) ? "
2233	read antwort
2234	done
2235	if [[ $antwort = n \|\| $antwort = N ]]
2236	then
2237	locat=user_abort; (( iec = 0 )); exit
2238	fi
2239	if [[ $do_batch = true ]]
2240	then
2241	printf " >>> batch-job will be created and submitted"
2242	else
2243	if [[ $local_compile = false ]]
2244	then
2245	printf " >>> MRUN will now continue to execute on this machine"
2246	else
2247	printf " >>> a test compilation will now be carried out on this machine"
2248	fi
2249	fi
2250	fi
2251
2252
2253
2254
2255	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2256	# CHENDE AKTIONEN DURCHGEFUEHRT
2257	if [[ $do_batch = false ]]
2258	then
2259
2260
2261	# TEMPORAEREN KATALOG ERZEUGEN
2262	mkdir -p $TEMPDIR
2263	chmod go+rx $TEMPDIR
2264	tmpcreate=true
2265
2266
2267	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2268	# TEMPORAERES VERZEICHNIS KOPIEREN
2269	if [[ $do_compile = true ]]
2270	then
2271
2272	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2273	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2274	if [[ $localhost = nech ]]
2275	then
2276	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2277	if mkdir -p $TEMPDIR_COMPILE
2278	then
2279	printf "\n *** \"$TEMPDIR_COMPILE\" "
2280	printf "\n is generated as temporary directory for cross compiling\n"
2281	else
2282	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2283	printf "\n needed for cross compilation failed"
2284	locat=compile
2285	exit
2286	fi
2287	else
2288	TEMPDIR_COMPILE=$TEMPDIR
2289	fi
2290
2291
2292	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2293	line=""
2294	grep "%depository_path" $config_file > tmp_mrun
2295	while read line
2296	do
2297	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2298	then
2299	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2300	then
2301	global_depository_path=`echo $line \| cut -d" " -s -f2`
2302	fi
2303	fi
2304	done < tmp_mrun
2305
2306	line=""
2307	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2308	while read line
2309	do
2310	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2311	then
2312	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2313	then
2314	local_depository_path=`echo $line \| cut -d" " -s -f2`
2315	fi
2316	fi
2317	done < tmp_mrun
2318
2319	if [[ "$local_depository_path" = "" ]]
2320	then
2321	if [[ "$global_depository_path" != "" ]]
2322	then
2323	local_depository_path=$global_depository_path
2324	else
2325	printf "\n\n +++ no depository path found in configuration file"
2326	printf "\n for local host \"$localhost\" "
2327	printf "\n please set \"\%depository_path\" in configuration file\n"
2328	locat=config_file; exit
2329	fi
2330	fi
2331	eval local_depository_path=$local_depository_path
2332	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2333	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2334
2335
2336	basename=`print $mainprog \| cut -f1 -d"."`
2337	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2338	if [[ ! -f $make_depository ]]
2339	then
2340	printf "\n"
2341	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2342	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2343	else
2344	cp $make_depository $TEMPDIR_COMPILE
2345	cd $TEMPDIR_COMPILE
2346	tar -xf $make_depository > /dev/null 2>&1
2347	cd - > /dev/null
2348	fi
2349
2350	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2351
2352	# FALLS USER-INTERFACE VORHANDEN UND AUF DATEI MIT ANDEREM NAMEN
2353	# ALS user_interface.f90 LIEGT, DIESEN GEAENDERTEN NAMEN INS
2354	# MAKEFILE EINTRAGEN
2355	# cd $TEMPDIR_COMPILE
2356	# interface_file=`grep -l "END SUBROUTINE user_parin" $source_list`
2357	# if [[ "$interface_file" != "" ]]
2358	# then
2359	# interface_file=`echo $interface_file \| cut -d"." -f1`
2360	# mv Makefile Makefile_old
2361	# sed "s/user_interface/$interface_file/g" Makefile_old > Makefile
2362	# fi
2363	# cd - > /dev/null
2364	else
2365	cp $executable ${TEMPDIR}/a.out
2366	fi
2367
2368
2369	# WECHSEL IN TEMPORAEREN KATALOG
2370	cd $TEMPDIR
2371	printf "\n *** changed to temporary directory: $TEMPDIR"
2372
2373
2374	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2375	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2376	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2377	# ERMITTELN
2378	(( i = 0 ))
2379	while (( i < iout ))
2380	do
2381	(( i = i + 1 ))
2382	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2383	then
2384	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2385	else
2386	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2387	fi
2388	done
2389
2390
2391	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2392	if [[ $do_compile = true ]]
2393	then
2394
2395
2396	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2397	printf "\n\n\n *** compilation starts \n$striche\n"
2398	printf " *** compilation with make using following options:\n"
2399	printf " make depository: $make_depository"
2400	printf " compilername: $compiler_name\n"
2401	printf " options: $fopts\n"
2402	printf " preprocessor-directives: $cpp_options \n"
2403	printf " linker-options: $lopts \n"
2404	printf " source code files: $source_list \n"
2405
2406	if [[ $localhost = nech ]]
2407	then
2408	ssh 136.172.44.192 -l $usern ". /SX/opt/etc/initsx.sh; cd \$HOME/work/${usern}.$kennung; sxmake -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2409	cp $TEMPDIR_COMPILE/a.out .
2410	[[ $? != 0 ]] && compile_error=true
2411	rm -rf $TEMPDIR_COMPILE
2412	elif [[ $localhost = lcsgib ]]
2413	then
2414	printf " compiler is called via ssh on \"bicegate\" using module \"$mpilib\" \n"
2415	ssh 130.73.232.103 -l $usern ". /usr/share/modules/init/bash; module load $mpilib; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2416	[[ ! -f a.out ]] && compile_error=true
2417	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2418	elif [[ $localhost = lcsgih ]]
2419	then
2420	printf " compiler is called via ssh on \"hicegate2\" using module \"$mpilib\" \n"
2421	ssh 130.75.4.103 -l $usern ". /usr/share/modules/init/bash; module load $mpilib; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2422	[[ ! -f a.out ]] && compile_error=true
2423	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2424	else
2425	[[ $localhost = lctit ]] && export LM_LICENSE_FILE=27050@tggls
2426	make -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2427	fi
2428
2429	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2430	then
2431	printf "\n +++ error occured while compiling or linking"
2432	locat=compile
2433
2434	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
2435	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
2436	# then
2437	exit
2438	# else
2439	# locat=normal
2440	# fi
2441	else
2442	printf "$striche\n *** compilation finished \n"
2443	fi
2444	fi
2445
2446
2447	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2448	if [[ $local_compile = true ]]
2449	then
2450	cd $HOME
2451	rm -rf $TEMPDIR
2452	locat=local_compile; exit
2453	fi
2454
2455
2456	# BEREITSTELLEN DER INPUT-DATEIEN
2457	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2458	(( i = 0 ))
2459	while (( i < iin ))
2460	do
2461	(( i = i + 1 ))
2462	if (( i == 1 ))
2463	then
2464	printf "\n\n *** providing INPUT-files:\n$striche"
2465	fi
2466
2467
2468	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2469	if [[ "${transin[$i]}" = unavailable ]]
2470	then
2471	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2472	then
2473	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2474	printf "\n is not available!"
2475	else
2476	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2477	printf "\n is not available!"
2478	fi
2479	continue
2480	fi
2481
2482	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2483	files_for_pes=false; datentyp=file
2484	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2485	then
2486	files_for_pes=true; datentyp=directory
2487	actionin[$i]=""
2488	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2489	then
2490	actionin[$i]=""
2491	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2492	then
2493	files_for_pes=true; datentyp=directory
2494	actionin[$i]="ar"
2495	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2496	then
2497	actionin[$i]="ar"
2498	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2499	then
2500	files_for_pes=true; datentyp=directory
2501	actionin[$i]="fl"
2502	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2503	then
2504	actionin[$i]="fl"
2505	fi
2506
2507	if [[ $files_for_pes = true ]]
2508	then
2509	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
2510	else
2511	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
2512	fi
2513
2514	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
2515	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
2516	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
2517	# SERVER ZU HOLEN
2518	if [[ "${actionin[$i]}" = fl ]]
2519	then
2520	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
2521	if [[ $files_for_pes = false ]]
2522	then
2523	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
2524	then
2525	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
2526	got_tmp[$i]=true
2527	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2528	then
2529	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2530	printf "\n *** trying to use backup copy in \"$WORK\" "
2531	cp $WORK/${frelin[$i]} ${localin[$i]}
2532	else
2533	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2534	printf "\n or \"$tmp_data_catalog\" does not exist!"
2535	printf "\n *** trying to get copy from archive"
2536	actionin[$i]=ar
2537	fi
2538	else
2539	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
2540	then
2541	mkdir ${localin[$i]}
2542	cd $tmp_data_catalog/${frelin[$i]}
2543	for file in $(ls *)
2544	do
2545	ln $file $TEMPDIR/${localin[$i]}
2546	done
2547	cd $TEMPDIR
2548	got_tmp[$i]=true
2549	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2550	then
2551	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2552	printf "\n *** trying to use backup copy in \"$WORK\" "
2553	cp -r $WORK/${frelin[$i]} ${localin[$i]}
2554	else
2555	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2556	printf "\n or \"$tmp_data_catalog\" does not exist!"
2557	printf "\n *** trying to get copy from archive"
2558	actionin[$i]=ar
2559	fi
2560	fi
2561	fi
2562
2563
2564	# DATEI LIEGT AUF ARCHIV-SERVER
2565	if [[ "${actionin[$i]}" = ar ]]
2566	then
2567
2568	if [[ $files_for_pes = false ]]
2569	then
2570	printf "\n file will be restored from archive-system ($archive_system)!"
2571	else
2572	printf "\n directory will be restored from archive-system ($archive_system)!"
2573	fi
2574
2575	file_restored=false
2576
2577	if [[ $archive_system = asterix ]]
2578	then
2579	do_stagein=true
2580	(( stagein_anz = 0 ))
2581	while [[ $do_stagein = true ]]
2582	do
2583	if [[ $files_for_pes = false ]]
2584	then
2585	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
2586	else
2587	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
2588	fi
2589	cat STAGEIN_OUTPUT
2590	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
2591	then
2592	file_restored=true
2593	do_stagein=false
2594	else
2595	(( stagein_anz = stagein_anz + 1 ))
2596	if (( stagein_anz == 10 ))
2597	then
2598	printf "\n +++ stagein stoped after 10 tries"
2599	locat=stage
2600	exit
2601	fi
2602	printf "\n +++ restoring from archive failed, trying again:"
2603	sleep 900
2604	fi
2605	done
2606	elif [[ $archive_system = DMF ]]
2607	then
2608	if [[ $files_for_pes = false ]]
2609	then
2610	printf "\n +++ restoring of single files impossible with $archive_system !\n"
2611	locat=DMF
2612	exit
2613	else
2614	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
2615	cp -r $ARCHIVE/${frelin[$i]} $PWD
2616	file_restored=true
2617	fi
2618	elif [[ $archive_system = tivoli ]]
2619	then
2620	if [[ $files_for_pes = false ]]
2621	then
2622	if [[ $localhost = ibmh ]]
2623	then
2624	ssh $usern@hdata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2625	else
2626	ssh $usern@bdata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2627	fi
2628	else
2629	(( inode = 0 ))
2630	while (( inode < nodes ))
2631	do
2632	if [[ $localhost = ibmh ]]
2633	then
2634	ssh $usern@hdata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2635	else
2636	ssh $usern@bdata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2637	fi
2638	(( inode = inode + 1 ))
2639	done
2640	fi
2641	file_restored=true
2642	elif [[ $archive_system = ut ]]
2643	then
2644	if [[ $files_for_pes = false ]]
2645	then
2646	cp $UT/${frelin[$i]} .
2647	else
2648	(( inode = 0 ))
2649	while (( inode < nodes ))
2650	do
2651	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
2652	(( inode = inode + 1 ))
2653	done
2654	fi
2655	file_restored=true
2656	else
2657	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
2658	locat=rearchive
2659	exit
2660	fi
2661
2662	if [[ $file_restored = true ]]
2663	then
2664
2665	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
2666	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
2667	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
2668	if [[ $files_for_pes = false ]]
2669	then
2670	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
2671	else
2672	mkdir $tmp_data_catalog/${frelin[$i]}
2673	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
2674	fi
2675	got_tmp[$i]=true
2676
2677	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
2678	mv ${frelin[$i]} ${localin[$i]}
2679
2680	fi
2681	fi
2682
2683
2684	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
2685	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
2686	then
2687
2688	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
2689	then
2690
2691	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
2692	printf "\n file will be provided for $numprocs processors"
2693	mkdir ${localin[$i]}
2694	ival=$numprocs
2695	(( ii = 0 ))
2696	while (( ii <= ival-1 ))
2697	do
2698	if (( ii < 10 ))
2699	then
2700	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
2701	elif (( ii < 100 ))
2702	then
2703	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
2704	elif (( ii < 1000 ))
2705	then
2706	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
2707	else
2708	cp ${absnamein[$i]} ${localin[$i]}/_$ii
2709	fi
2710	(( ii = ii + 1 ))
2711	done
2712
2713	else
2714
2715	if [[ $files_for_pes = true ]]
2716	then
2717
2718	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
2719	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
2720	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
2721	# PER MOVE UMBENANNT WERDEN
2722	printf "\n providing $numprocs files for the respective processors"
2723	mkdir ${localin[$i]}
2724	if [[ $link_local_input = true ]]
2725	then
2726	printf " using ln -f\n"
2727	cd ${absnamein[$i]}
2728	for file in $(ls *)
2729	do
2730	ln -f $file ${localin[$i]}
2731	done
2732	cd $TEMPDIR
2733	fi
2734	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
2735	if [[ ! -f "${localin[$i]}/_0000" ]]
2736	then
2737	if [[ $link_local_input = true ]]
2738	then
2739	printf " ln failed for .../_0000, using cp...\n"
2740	fi
2741	cp -r ${absnamein[$i]}/* ${localin[$i]}
2742	fi
2743
2744	else
2745	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
2746	if [[ $link_local_input = true ]]
2747	then
2748	printf " using ln -f\n"
2749	ln -f ${absnamein[$i]} ${localin[$i]}
2750	fi
2751	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
2752	if [[ ! -f "${localin[$i]}" ]]
2753	then
2754	if [[ $link_local_input = true ]]
2755	then
2756	printf " ln failed, using cp...\n"
2757	fi
2758	cp ${absnamein[$i]} ${localin[$i]}
2759	fi
2760	fi
2761	fi
2762	fi
2763
2764	done
2765	if (( i != 0 ))
2766	then
2767	printf "\n$striche\n *** all INPUT-files provided \n"
2768	fi
2769
2770
2771	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
2772	(( i = 0 ))
2773	while (( i < iic ))
2774	do
2775	(( i = i + 1 ))
2776	if (( i == 1 ))
2777	then
2778	printf "\n\n *** execution of INPUT-commands:\n$striche"
2779	fi
2780	printf "\n >>> ${in_command[$i]}"
2781	eval ${in_command[$i]}
2782	if (( i == iic ))
2783	then
2784	printf "\n$striche\n"
2785	fi
2786	done
2787
2788
2789	# VERBLEIBENDE CPU-ZEIT BERECHNEN
2790	cpurest=${cpumax}.
2791
2792
2793	# START DVR STREAMING SERVER
2794	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
2795	then
2796	if [[ "$dvr_server" != "" ]]
2797	then
2798
2799	printf "\n\n *** preparing the dvr streaming server configuration file"
2800
2801	# Check, if a dvr server is already running
2802	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
2803	if [[ "$running_dvrserver_id" != "" ]]
2804	then
2805
2806	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
2807	printf "\n This server is used instead starting a new one!"
2808	printf "\n If required, script \"process_dvr_output\" has to be run manually."
2809
2810	else
2811
2812	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
2813	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
2814	then
2815	cp ${PALM_BIN}/.dvrserver.config .
2816
2817	# Entering the BASEDIR, UID and GID into this file
2818	user_id=`id -u`
2819	group_id=`id -g`
2820	# & is needed as seperator, because TEMPDIR contains /
2821	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
2822	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
2823	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
2824	mv .dvrserver.3 .dvrserver.config
2825	rm .dvrserver.1 .dvrserver.2
2826
2827	# Start dvr server in background, get his id and print on terminal
2828	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
2829	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
2830	printf "\n *** streaming server with id=$dvrserver_id is started in background"
2831	local_dvrserver_running=.TRUE.
2832	else
2833	printf "\n +++ missing file \".dvrserver.config\" in directory:"
2834	printf "\n \"$PALM_BIN\" "
2835	locat=dvr
2836	exit
2837	fi
2838
2839	fi
2840
2841	else
2842	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
2843	fi
2844	fi
2845
2846
2847	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
2848	# LESEN VON PALM)
2849	cat > ENVPAR << %%END%%
2850	&envpar run_identifier = '$fname', host = '$localhost',
2851	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2852	maximum_cpu_time_allowed = ${cpumax}.,
2853	revision = '$global_revision',
2854	local_dvrserver_running = $local_dvrserver_running /
2855
2856	%%END%%
2857
2858
2859	# PROGRAMMSTART
2860	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
2861	PATH=$PATH:$TEMPDIR
2862
2863	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
2864	then
2865	if [[ "$ENVIRONMENT" = BATCH ]]
2866	then
2867	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
2868	then
2869	printf "\n +++ debug is allowed in interactive mode only"
2870	locat=debug
2871	exit
2872	fi
2873	fi
2874	if [[ $localhost = decalpha ]]
2875	then
2876	dxladebug a.out
2877	elif [[ $localhost = ibmb \|\| $localhost = ibmh ]]
2878	then
2879
2880	# SETUP THE IBM MPI ENVIRONMENT
2881	export MP_SHARED_MEMORY=yes
2882	export AIXTHREADS_SCOPE=S
2883	export OMP_NUM_THREADS=$threads_per_task
2884	export AUTHSTATE=files
2885	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
2886
2887	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
2888	export MP_ADAPTER_USE=shared
2889	export MP_CPU_USE=multiple
2890	export MP_TIMEOUT=1200
2891
2892	unset MP_TASK_AFFINITY
2893
2894	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
2895	#(( ii = 1 ))
2896	#while (( ii <= $numprocs ))
2897	#do
2898	# echo $localhost_realname >> hostfile
2899	# (( ii = ii + 1 ))
2900	#done
2901	#export MP_HOSTFILE=hostfile
2902
2903	if [[ "$LOADLBATCH" = yes ]]
2904	then
2905	totalview poe a.out $ROPTS
2906	else
2907	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
2908	export TVDSVRLAUNCHCMD=ssh
2909	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
2910	fi
2911	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
2912	then
2913	# CURRENTLY NO DEBUGGER ON LCSGI
2914	if [[ $run_coupled_model = true ]]
2915	then
2916	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
2917	locat=debug
2918	exit
2919	else
2920	echo "no_coupling" > runfile_atmos
2921	fi
2922	(( ii = $numprocs / $threads_per_task ))
2923	export OMP_NUM_THREADS=$threads_per_task
2924	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
2925	if [[ $threads_per_task != 1 ]]
2926	then
2927	printf "\n threads per task: $threads_per_task"
2928	fi
2929	printf "\n\n"
2930	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
2931	then
2932	# export MPI_LAUNCH_TIMEOUT=360
2933	if [[ "$totalview" = true ]]
2934	then
2935	printf "\n running totalview debugger"
2936	mpiexec_mpt -tv -n $ii ./a.out $ROPTS < runfile_atmos
2937	else
2938	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
2939	fi
2940	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
2941	then
2942	# ulimit -s 300000 # A too large stack size causes problems
2943	# export MV2_NUM_PORTS=2
2944	# export MV2_CPU_MAPPING=0:1:2:3
2945	mpiexec ./a.out $ROPTS < runfile_atmos
2946	fi
2947	else
2948	printf "\n +++ no debug available on \"$localhost\" "
2949	printf "\n or not implemented in mrun so far"
2950	locat=debug
2951	exit
2952	fi
2953	else
2954	if [[ -n $numprocs ]]
2955	then
2956
2957	# RUNNING THE PROGRAM ON PARALLEL MACHINES
2958	if [[ $(echo $host \| cut -c1-3) = ibm ]]
2959	then
2960	# SETUP THE IBM MPI ENVIRONMENT
2961	export MP_SHARED_MEMORY=yes
2962	export AIXTHREAD_SCOPE=S
2963	export OMP_NUM_THREADS=$threads_per_task
2964	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
2965	export AUTHSTATE=files
2966	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
2967	# export MP_PRINTENV=yes
2968
2969	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
2970	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
2971	export MP_WAIT_MODE=poll
2972	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
2973	# export MP_EAGER_LIMIT=65535
2974
2975	# # TESTWEISE FUER TURBOMPI (JAN 05)
2976	# export MPJ_MTAB=128
2977	# export MPJ_ALLTOALL=1
2978	# export MPJ_ALLTOALLV=1
2979
2980	if [[ "$LOADLBATCH" = yes ]]
2981	then
2982	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
2983	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
2984	then
2985	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
2986	else
2987	poe ./a.out $ROPTS
2988	fi
2989	else
2990	if [[ $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms ]]
2991	then
2992	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
2993	elif [[ $localhost = ibmy ]]
2994	then
2995	if [[ -f $hostfile ]]
2996	then
2997	cp $hostfile hostfile
2998	else
2999	(( ii = 1 ))
3000	while (( ii <= $numprocs ))
3001	do
3002	echo $localhost_realname >> hostfile
3003	(( ii = ii + 1 ))
3004	done
3005	fi
3006	export MP_HOSTFILE=hostfile
3007	./a.out -procs $tasks_per_node $ROPTS
3008	else
3009	if [[ "$host_file" = "" ]]
3010	then
3011	printf "\n +++ no hostfile given in configuration file"
3012	locat=config_file
3013	exit
3014	else
3015	eval host_file=$host_file
3016	fi
3017	export MP_HOSTFILE=$host_file
3018	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3019	fi
3020	fi
3021	elif [[ $host = nech \|\| $host = necriam ]]
3022	then
3023	(( ii = nodes ))
3024	if [[ $ii = 1 ]]
3025	then
3026	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3027	export MPIPROGINF=YES
3028	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3029	echo "*** execution on single node with mpirun"
3030	mpirun -np $numprocs ./a.out $ROPTS
3031	else
3032	(( i = 0 ))
3033	while (( i < ii ))
3034	do
3035	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3036	(( i = i + 1 ))
3037	done
3038
3039	echo "#!/bin/sh" > mpi_exec_shell
3040	echo " " >> mpi_exec_shell
3041	echo "set -u" >> mpi_exec_shell
3042	echo "F_ERRCNT=0" >> mpi_exec_shell
3043	echo "MPIPROGINV=YES" >> mpi_exec_shell
3044	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3045	echo "cpurest=$cpurest" >> mpi_exec_shell
3046	echo "fname=$fname" >> mpi_exec_shell
3047	echo "localhost=$localhost" >> mpi_exec_shell
3048	echo "return_addres=$return_addres" >> mpi_exec_shell
3049	echo "return_username=$return_username" >> mpi_exec_shell
3050	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3051	echo "write_binary=$write_binary" >> mpi_exec_shell
3052	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3053	echo " " >> mpi_exec_shell
3054	echo "export F_ERRCNT" >> mpi_exec_shell
3055	echo "export MPIPROGINV" >> mpi_exec_shell
3056	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3057	echo "export cpurest" >> mpi_exec_shell
3058	echo "export fname" >> mpi_exec_shell
3059	echo "export localhost" >> mpi_exec_shell
3060	echo "export return_addres" >> mpi_exec_shell
3061	echo "export return_username" >> mpi_exec_shell
3062	echo "export tasks_per_node" >> mpi_exec_shell
3063	echo "export write_binary" >> mpi_exec_shell
3064	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3065	echo " " >> mpi_exec_shell
3066	echo "exec ./a.out" >> mpi_exec_shell
3067
3068	chmod u+x mpi_exec_shell
3069	export MPIPROGINF=YES
3070	mpirun -f multinode_config &
3071	wait
3072
3073	fi
3074	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lctit ]]
3075	then
3076
3077	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3078	# DOES NOT EXIST
3079	if [[ $host != lcsgih && $host != lcsgib ]]
3080	then
3081	if [[ -f $hostfile ]]
3082	then
3083	cp $hostfile hostfile
3084	else
3085	(( ii = 1 ))
3086	while (( ii <= $numprocs / $threads_per_task ))
3087	do
3088	echo $localhost_realname >> hostfile
3089	(( ii = ii + 1 ))
3090	done
3091	fi
3092	eval zeile=\"`head -n $ii hostfile`\"
3093	printf "\n *** running on: $zeile"
3094	fi
3095
3096	(( ii = $numprocs / $threads_per_task ))
3097	export OMP_NUM_THREADS=$threads_per_task
3098	# echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3099	if [[ $threads_per_task != 1 ]]
3100	then
3101	printf "\n threads per task: $threads_per_task"
3102	fi
3103	if [[ $run_coupled_model = false ]]
3104	then
3105	if [[ "$ocean_file_appendix" = true ]]
3106	then
3107	echo "precursor_ocean" > runfile_atmos
3108	else
3109	echo "precursor_atmos" > runfile_atmos
3110	fi
3111	printf "\n\n"
3112	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3113	then
3114	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3115	then
3116	# export MPI_LAUNCH_TIMEOUT=360
3117	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3118	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3119	then
3120	# ulimit -s 300000 # A too large stack size causes problems
3121	# export MV2_NUM_PORTS=2
3122	# export MV2_CPU_MAPPING=0:1:2:3
3123	mpiexec ./a.out $ROPTS < runfile_atmos
3124	fi
3125	elif [[ $host = lcxt4 ]]
3126	then
3127	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3128	else
3129	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3130	fi
3131	else
3132
3133	# currently there is no full MPI-2 support on ICE and XT4
3134	(( iia = $numprocs_atmos / $threads_per_task ))
3135	(( iio = $numprocs_ocean / $threads_per_task ))
3136	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3137	printf "\n using $coupled_mode coupling"
3138	printf "\n\n"
3139
3140	if [[ $coupled_mode = "mpi2" ]]
3141	then
3142	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3143	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3144	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3145	then
3146
3147	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3148	then
3149	# export MPI_LAUNCH_TIMEOUT=360
3150	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3151	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3152	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3153	then
3154	# ulimit -s 300000 # A too large stack size causes problems
3155	# export MV2_NUM_PORTS=2
3156	# export MV2_CPU_MAPPING=0:1:2:3
3157	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3158	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3159	fi
3160
3161	elif [[ $host = lcxt4 ]]
3162	then
3163
3164	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3165	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3166
3167	else
3168	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3169	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3170	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3171	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3172	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3173	fi
3174	wait
3175
3176	else
3177
3178	echo "coupled_run $iia $iio" > runfile_atmos
3179	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3180	then
3181
3182	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3183	then
3184	# export MPI_LAUNCH_TIMEOUT=360
3185	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3186	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3187	then
3188	# ulimit -s 300000 # A too large stack size causes problems
3189	# export MV2_NUM_PORTS=2
3190	# export MV2_CPU_MAPPING=0:1:2:3
3191	mpiexec ./a.out $ROPTS < runfile_atmos
3192	fi
3193
3194	elif [[ $host = lcxt4 ]]
3195	then
3196
3197	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3198
3199	fi
3200	wait
3201	fi
3202
3203	# if [[ $scirocco = true ]]
3204	# then
3205	# mpiexec -machinefile hostfile -n $ii a.out $ROPTS
3206	# else
3207	# mpirun -machinefile hostfile -np $ii a.out $ROPTS
3208	# fi
3209	fi
3210	elif [[ $host = decalpha ]]
3211	then
3212	dmpirun -np $numprocs a.out $ROPTS
3213	elif [[ $host = lctit ]]
3214	then
3215	export runfile=runfile.$kennung
3216
3217	echo "cd $PWD" > $runfile
3218	echo "export OMP_NUM_THREADS=$OMP_NUM_THREADS" >> $runfile
3219	echo "export cpurest=$cpurest" >> $runfile
3220	echo "export fname=$fname" >> $runfile
3221	echo "export localhost=$localhost" >> $runfile
3222	echo "export return_addres=$return_addres" >> $runfile
3223	echo "export return_username=$return_username" >> $runfile
3224	echo "export tasks_per_node=$tasks_per_node" >> $runfile
3225	echo "export write_binary=$write_binary" >> $runfile
3226	echo "export use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> $runfile
3227	echo "./a.out" >> $runfile
3228	chmod u+x $runfile
3229
3230	if [[ "$QUEUE" = interactive ]]
3231	then
3232	mpirun -np $numprocs a.out $ROPTS
3233	else
3234	(( mem_tsubame = $memory / 1024.0 ))
3235	echo "Memory for Tsubame for each process in GB:", $mem_tsubame
3236	# n1ge -fore -g 1S060156 -mpi $numprocs -mem 4 -N palm -q $queue a.out $ROPTS
3237	# /n1ge/TITECH_GRID/tools/bin/n1ge -fore -g $group_number -mpi ${numprocs}:$tasks_per_node -mem $mem_tsubame -N palm -rt $minuten -q $queue a.out $ROPTS
3238	n1ge -fore -g $group_number -mpi ${numprocs}:$tasks_per_node -mem $mem_tsubame -N palm -rt $minuten -q $queue a.out $ROPTS
3239	fi
3240
3241	rm $runfile
3242	else
3243	mpprun -n $numprocs a.out $ROPTS
3244	fi
3245	[[ $? != 0 ]] && execution_error=true
3246
3247
3248	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3249	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3250	then
3251	apprentice
3252	fi
3253	else
3254	a.out $ROPTS
3255	fi
3256	fi
3257	if [[ $? != 0 \|\| $execution_error = true ]]
3258	then
3259
3260	# ABBRUCH BEI LAUFZEITFEHLER
3261	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3262	printf "\n +++ runtime error occured"
3263	locat=execution
3264	exit
3265	else
3266	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3267	printf "\n$striche\n *** execution finished \n"
3268
3269	# Stop the dvr streaming server and process the dvr output in order
3270	# to create dvrs- and html-files containing all streams
3271	if [[ "$dvrserver_id" != "" ]]
3272	then
3273	kill $dvrserver_id
3274	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3275
3276	# If there is a directory, data have been output by the
3277	# streaming server. Otherwise, user has chosen dvrp_output=local
3278	if [[ -d DATA_DVR ]]
3279	then
3280
3281	# Add the current dvr configuration file to the dvr output
3282	# directory
3283	cp .dvrserver.config DATA_DVR
3284
3285	# Process the dvr output (option -s for also generating
3286	# sequence mode data)
3287	process_dvr_output -d DATA_DVR -f $fname -s
3288
3289	else
3290
3291	# Process the local output
3292	process_dvr_output -l -d DATA_DVR -f $fname
3293
3294	fi
3295
3296	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3297	then
3298
3299	# Process dvr output generated in local mode (dvrp_output=local)
3300	process_dvr_output -l -d DATA_DVR -f $fname
3301
3302	fi
3303	fi
3304
3305
3306
3307	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3308	(( i = 0 ))
3309	while (( i < ioc ))
3310	do
3311	(( i = i + 1 ))
3312	if (( i == 1 ))
3313	then
3314	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
3315	fi
3316	printf "\n >>> ${out_command[$i]}"
3317	eval ${out_command[$i]}
3318	if (( i == ioc ))
3319	then
3320	printf "\n$striche\n"
3321	fi
3322	done
3323
3324
3325	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
3326	if [[ $do_trace = true ]]
3327	then
3328	printf "\n\n"
3329	ls -al
3330	fi
3331
3332
3333
3334	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
3335	(( i = 0 ))
3336	while (( i < iout ))
3337	do
3338	(( i = i + 1 ))
3339	if (( i == 1 ))
3340	then
3341	printf "\n\n *** saving OUTPUT-files:\n$striche"
3342	fi
3343
3344	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3345	files_for_pes=false; filetyp=file
3346	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
3347	then
3348	files_for_pes=true; filetyp=directory
3349	actionout[$i]=""
3350	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
3351	then
3352	actionout[$i]=""
3353	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
3354	then
3355	files_for_pes=true; filetyp=directory
3356	actionout[$i]="ar"
3357	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
3358	then
3359	actionout[$i]="ar"
3360	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
3361	then
3362	files_for_pes=true; filetyp=directory
3363	actionout[$i]="fl"
3364	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
3365	then
3366	actionout[$i]="fl"
3367	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
3368	then
3369	files_for_pes=true; filetyp=directory
3370	actionout[$i]="tr"
3371	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
3372	then
3373	actionout[$i]="tr"
3374	fi
3375
3376	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
3377	then
3378	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
3379	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
3380	then
3381	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
3382	else
3383
3384
3385	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3386	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3387	# REMOTE-RECHNUNGEN
3388	if [[ "${actionout[$i]}" = tr ]]
3389	then
3390	if [[ $localhost != $fromhost ]]
3391	then
3392	if [[ $files_for_pes = false ]]
3393	then
3394	cps=""
3395	cst=""
3396	else
3397	cps=-c
3398	cst="/"
3399	fi
3400	if [[ $localhost = ibmh \|\| $localhost = ibmb \|\| $localhost = nech ]]
3401	then
3402
3403	# TRANSFER IN EIGENSTAENDIGEM JOB
3404	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3405	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3406	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3407	if [[ $files_for_pes = false ]]
3408	then
3409	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3410	else
3411	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
3412	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
3413	fi
3414
3415	echo "set -x" > transfer_${localout[$i]}
3416	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3417
3418	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
3419	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
3420	printf "\n or higher cycle\n"
3421	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3422
3423	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3424
3425	if [[ $localhost = nech ]]
3426	then
3427	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3428	else
3429	if [[ "$LOGNAME" = b323013 ]]
3430	then
3431	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3432	else
3433	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3434	fi
3435	fi
3436
3437	else
3438
3439	# TRANSFER INNERHALB DIESES JOBS
3440	transfer_failed=false
3441	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
3442	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
3443	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3444	[[ $? != 0 ]] && transfer_failed=true
3445
3446	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3447	# LOKALER MASCHINE ANLEGEN
3448	if [[ $transfer_failed = true ]]
3449	then
3450	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3451	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3452
3453	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3454	# ANLEGEN.
3455	eval local_catalog=${pathout[$i]}
3456	if [[ ! -d $local_catalog ]]
3457	then
3458	printf " *** local directory does not exist. Trying to create:\n"
3459	printf " $local_catalog \n"
3460	mkdir -p $local_catalog
3461	fi
3462	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3463	transfer_problems=true
3464	fi
3465	fi
3466	else
3467
3468	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
3469	actionout[$i]=""
3470	fi
3471	fi
3472
3473
3474	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3475	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3476	# REMOTE-RECHNUNGEN
3477	if [[ "${actionout[$i]}" = tra ]]
3478	then
3479	if [[ $localhost != $fromhost ]]
3480	then
3481	if [[ $localhost = ibmh \|\| $localhost = ibmb \|\| $localhost = nech ]]
3482	then
3483
3484	# TRANSFER IN EIGENSTAENDIGEM JOB
3485	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3486	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3487	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3488	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3489
3490	echo "set -x" > transfer_${localout[$i]}
3491	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3492
3493	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
3494	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
3495	printf "\n or higher cycle\n"
3496	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3497
3498	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3499
3500	if [[ $localhost = nech ]]
3501	then
3502	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3503	else
3504	if [[ $LOGNAME = b323013 ]]
3505	then
3506	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3507	else
3508	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3509	fi
3510	fi
3511
3512	else
3513
3514	# TRANSFER INNERHALB DIESES JOBS
3515	transfer_failed=false
3516	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
3517	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
3518	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3519	[[ $? != 0 ]] && transfer_failed=true
3520
3521	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3522	# LOKALER MASCHINE ANLEGEN
3523	if [[ $transfer_failed = true ]]
3524	then
3525	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3526	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3527
3528	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3529	# ANLEGEN
3530	eval local_catalog=${pathout[$i]}
3531	if [[ ! -d $local_catalog ]]
3532	then
3533	printf " *** local directory does not exist. Trying to create:\n"
3534	printf " $local_catalog \n"
3535	mkdir -p $local_catalog
3536	fi
3537
3538	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3539	transfer_problems=true
3540	fi
3541	fi
3542	else
3543
3544	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
3545	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
3546	actionout[$i]=a
3547	fi
3548	fi
3549
3550
3551	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
3552	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
3553	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
3554	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
3555	if [[ "${actionout[$i]}" = fl ]]
3556	then
3557	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3558	chmod g+rx $tmp_data_catalog
3559	if [[ $files_for_pes = false ]]
3560	then
3561	printf "\n >>> OUTPUT: ${localout[$i]} to"
3562	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3563	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
3564	else
3565	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
3566	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3567	mkdir $tmp_data_catalog/${frelout[$i]}
3568	cd ${localout[$i]}
3569	for file in $(ls *)
3570	do
3571	ln -f $file $tmp_data_catalog/${frelout[$i]}
3572	done
3573	cd $TEMPDIR
3574	fi
3575
3576
3577	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
3578	if [[ $store_on_archive_system = true ]]
3579	then
3580
3581	if [[ $archive_system = asterix ]]
3582	then
3583	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3584	if [[ $files_for_pes = false ]]
3585	then
3586	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3587	else
3588	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3589	fi
3590	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3591	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
3592	echo "then" >> archive_${frelout[$i]}
3593	echo " do_stageout=false" >> archive_${frelout[$i]}
3594	echo "else" >> archive_${frelout[$i]}
3595	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
3596	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
3597	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
3598	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
3599	if [[ $files_for_pes = false ]]
3600	then
3601	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
3602	else
3603	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
3604	fi
3605	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
3606	echo "fi" >> archive_${frelout[$i]}
3607	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3608	elif [[ $archive_system = DMF ]]
3609	then
3610	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3611	if [[ $files_for_pes = false ]]
3612	then
3613	printf "\n +++ archiving of single files impossible with $archive_system !\n"
3614	locat=DMF
3615	exit
3616	else
3617	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
3618	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
3619	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
3620	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
3621	fi
3622	elif [[ $archive_system = tivoli ]]
3623	then
3624	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3625	if [[ $files_for_pes = false ]]
3626	then
3627	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3628	echo "set -x" >> archive_${frelout[$i]}
3629	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3630	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3631	else
3632
3633	echo "set -x" >> archive_${frelout[$i]}
3634	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
3635	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3636	cd $tmp_data_catalog
3637	all_files=`ls -1 ${frelout[$i]}/*`
3638	cd - > /dev/null
3639	(( inode = 0 ))
3640	(( tp1 = tasks_per_node + 1 ))
3641	while (( inode < nodes ))
3642	do
3643	# echo "*** all_files = \"$all_files\" "
3644	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3645	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3646	# echo "*** tasks_per_node = \"$tasks_per_node\" "
3647	# echo "*** files = \"$files\" "
3648	# echo "*** all_files = \"$all_files\" "
3649	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3650	echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3651	echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3652	(( inode = inode + 1 ))
3653	done
3654	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3655	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3656	fi
3657	elif [[ $archive_system = ut ]]
3658	then
3659	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3660	if [[ $files_for_pes = false ]]
3661	then
3662	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3663	echo "set -x" >> archive_${frelout[$i]}
3664	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3665	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3666	else
3667
3668	echo "set -x" >> archive_${frelout[$i]}
3669	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
3670	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
3671	cd $tmp_data_catalog
3672	all_files=`ls -1 ${frelout[$i]}/*`
3673	cd - > /dev/null
3674	(( inode = 0 ))
3675	(( tp1 = tasks_per_node + 1 ))
3676	while (( inode < nodes ))
3677	do
3678	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3679	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3680	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3681	(( inode = inode + 1 ))
3682	done
3683	fi
3684	elif [[ $archive_system = none ]]
3685	then
3686	printf " +++ archiving on $localhost not available!\n"
3687	fi
3688
3689	if [[ $archive_system != none ]]
3690	then
3691	if [[ $localhost = ibmh \|\| $localhost = ibmb ]]
3692	then
3693	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
3694	subjob -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
3695	elif [[ $localhost = nech ]]
3696	then
3697	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
3698	fi
3699	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3700	fi
3701	else
3702	printf " +++ caution: option -A is switched on. No archiving on $archive_system!\n"
3703	fi
3704
3705
3706	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
3707	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
3708	if [[ $files_for_pes = false ]]
3709	then
3710	cat /dev/null > ${pathout[$i]}
3711	else
3712	mkdir -p ${pathout[$i]}
3713	fi
3714
3715	fi
3716
3717
3718	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
3719	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
3720	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
3721	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
3722	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
3723	# GEMAESSEN ARCHIVIERUNGEN GESETZT
3724	if [[ "${actionout[$i]}" = ar ]]
3725	then
3726	if [[ $files_for_pes = false ]]
3727	then
3728	printf "\n >>> OUTPUT: ${localout[$i]} to"
3729	printf "\n ${pathout[$i]}"
3730	printf "\n File will be copied to archive-system ($archive_system) !\n"
3731	else
3732	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
3733	printf "\n ${pathout[$i]}"
3734	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
3735	fi
3736	mv ${localout[$i]} ${frelout[$i]}
3737
3738	file_saved=false
3739
3740	if [[ $archive_system = asterix ]]
3741	then
3742	do_stageout=true
3743	(( stageout_anz = 0 ))
3744	while [[ $do_stageout = true ]]
3745	do
3746	if [[ $files_for_pes = false ]]
3747	then
3748	stageout ${frelout[$i]} > STAGE_OUTPUT
3749	else
3750	stageout -t ${frelout[$i]} > STAGE_OUTPUT
3751	fi
3752	cat STAGE_OUTPUT
3753	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
3754	then
3755	file_saved=true
3756	do_stageout=false
3757	else
3758	if [[ $files_for_pes = false ]]
3759	then
3760	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
3761	else
3762	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
3763	fi
3764	(( stageout_anz = stageout_anz + 1 ))
3765	if (( stageout_anz == 10 ))
3766	then
3767	printf "\n +++ stoped after 10 unsuccessful tries!"
3768	archive_save=false
3769	do_stageout=false
3770	else
3771	printf "\n *** new try to store on archive after 15 min:"
3772	sleep 900
3773	fi
3774	fi
3775	done
3776	elif [[ $archive_system = DMF ]]
3777	then
3778	if [[ $files_for_pes = false ]]
3779	then
3780	printf "\n +++ archiving of single files impossible on $archive_system!\n"
3781	locat=DMF
3782	exit
3783	else
3784	rm -rf $ARCHIVE/${frelout[$i]}
3785	cp -r ${frelout[$i]} $ARCHIVE
3786	fi
3787	file_saved=true
3788	elif [[ $archive_system = tivoli ]]
3789	then
3790	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
3791	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
3792	# GELEGT WERDEN
3793	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3794	chmod g+rx $tmp_data_catalog
3795	if [[ $files_for_pes = false ]]
3796	then
3797	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
3798	else
3799	mkdir $tmp_data_catalog/${frelout[$i]}
3800	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
3801	fi
3802
3803	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
3804	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
3805	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
3806	if [[ $files_for_pes = false ]]
3807	then
3808	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3809	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3810	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3811	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3812	else
3813	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3814	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3815	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3816	fi
3817
3818	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
3819	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3820	file_saved=true
3821
3822	elif [[ $archive_system = ut ]]
3823	then
3824	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
3825	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
3826	# GELEGT WERDEN
3827	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3828	chmod g+rx $tmp_data_catalog
3829	if [[ $files_for_pes = false ]]
3830	then
3831	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
3832	else
3833	mkdir $tmp_data_catalog/${frelout[$i]}
3834	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
3835	fi
3836
3837	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
3838	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
3839	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
3840	if [[ $files_for_pes = false ]]
3841	then
3842	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3843	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3844	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3845	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3846	else
3847	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3848	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3849	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3850	fi
3851
3852	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
3853	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3854	file_saved=true
3855
3856	else
3857	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
3858	archive_save=false
3859	fi
3860	if [[ $file_saved = true ]]
3861	then
3862	if [[ $files_for_pes = false ]]
3863	then
3864	cat /dev/null > ${pathout[$i]}
3865	else
3866	mkdir -p ${pathout[$i]}
3867	fi
3868	fi
3869	fi
3870
3871	# APPEND AUF LOKALER MASCHINE
3872	if [[ "${actionout[$i]}" = "a" ]]
3873	then
3874	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
3875	cat ${localout[$i]} >> ${pathout[$i]}
3876	fi
3877
3878	# KOPIEREN AUF LOKALER MASCHINE
3879	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
3880	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
3881	then
3882
3883	# KOPIEREN AUF EINPROZESSORMASCHINE
3884	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
3885	then
3886	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
3887	if [[ $link_local_output = true ]]
3888	then
3889	printf " using ln -f\n"
3890	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
3891	fi
3892	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
3893	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
3894	then
3895	if [[ $link_local_output = true ]]
3896	then
3897	printf " ln failed, using cp...\n"
3898	fi
3899	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
3900	fi
3901	else
3902	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
3903	if [[ $link_local_output = true ]]
3904	then
3905	printf " using ln -f\n"
3906	ln -f ${localout[$i]} ${pathout[$i]}
3907	fi
3908	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
3909	if [[ ! -f "${pathout[$i]}" ]]
3910	then
3911	if [[ $link_local_output = true ]]
3912	then
3913	printf " ln failed, using cp...\n"
3914	fi
3915	cp ${localout[$i]} ${pathout[$i]}
3916	fi
3917	fi
3918
3919	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
3920	then
3921
3922	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
3923	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
3924	# WIRD DANN KOPIERT
3925	# PER MOVE UMBENANNT WERDEN
3926	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
3927	if [[ $link_local_output = true ]]
3928	then
3929	printf " using ln -f\n"
3930	mkdir ${pathout[$i]}
3931	cd ${localout[$i]}
3932	for file in $(ls *)
3933	do
3934	ln -f $file ${pathout[$i]}
3935	done
3936	cd $TEMPDIR
3937	fi
3938	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
3939	if [[ ! -f "${pathout[$i]}/_0000" ]]
3940	then
3941	if [[ $link_local_output = true ]]
3942	then
3943	printf " ln failed for .../_0000, using cp...\n"
3944	fi
3945	cp -r ${localout[$i]} ${pathout[$i]}
3946	fi
3947
3948	fi
3949	fi
3950	done
3951	if (( i != 0 ))
3952	then
3953	if [[ $transfer_problems = true ]]
3954	then
3955	printf "\n$striche\n *** OUTPUT-files saved"
3956	printf "\n +++ WARNING: some data transfers failed! \n"
3957	else
3958	printf "\n$striche\n *** all OUTPUT-files saved \n"
3959	fi
3960	fi
3961
3962
3963	# EVENTUELL FOLGEJOB STARTEN
3964	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
3965	if [[ -f CONTINUE_RUN ]]
3966	then
3967
3968	if [[ $archive_save = true ]]
3969	then
3970
3971	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
3972	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
3973	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
3974	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
3975	# HANDEN
3976	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
3977	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
3978	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
3979	if [[ $(echo $mc \| grep -c "#") != 0 ]]
3980	then
3981	mc=`echo $mc \| sed 's/#/f/g'`
3982	fi
3983
3984
3985	# JOB STARTEN
3986	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
3987	echo " $mc"
3988	printf "\n$striche\n"
3989	if [[ $localhost != $fromhost ]]
3990	then
3991
3992	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms \|\| $localhost = lctit ]]
3993	then
3994	echo "*** ssh will be used to initiate restart-runs!"
3995	echo " return_addres=\"$return_addres\" "
3996	echo " return_username=\"$return_username\" "
3997	if [[ $return_addres = 172.20.25.41 ]]
3998	then
3999	# WORKAROUND AUF SCIROCCO AM TIT
4000	print "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc " \| ssh $return_addres -l $return_username
4001	else
4002	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4003	fi
4004	else
4005	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4006	locat=restart; exit
4007	fi
4008
4009	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4010	# DER AKTUELLE JOB ENDET
4011	sleep 30
4012
4013	else
4014
4015	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4016	# RUFEN WERDEN, AUSSER AUF lcfimm
4017	cd $LOCAL_PWD
4018	if [[ $localhost = lcfimm ]]
4019	then
4020	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4021	else
4022	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4023	fi
4024	cd - > /dev/null
4025	fi
4026	printf "\n$striche\n *** restart-run initiated \n"
4027
4028
4029	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4030	# GEHOLT WORDEN SIND, LOESCHEN
4031	(( i = 0 ))
4032	while (( i < iin ))
4033	do
4034	(( i = i + 1 ))
4035	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4036	then
4037	rm -r $tmp_data_catalog/${frelin[$i]}
4038	fi
4039	done
4040
4041	else
4042
4043	printf "\n +++ no restart-run possible, since errors occured"
4044	printf "\n during the archive process"
4045	fi
4046
4047	fi
4048
4049
4050
4051	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4052	if [[ "$email_notification" != "" ]]
4053	then
4054
4055	if [[ $localhost != $fromhost ]]
4056	then
4057	if [[ -f CONTINUE_RUN ]]
4058	then
4059	echo "PALM restart run necessary" > email_text
4060	echo "description header of actual run:" >> email_text
4061	cat CONTINUE_RUN >> email_text
4062	echo "mrun-command to restart:" >> email_text
4063	echo "$mc" >> email_text
4064	else
4065	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4066	fi
4067	mail $email_notification < email_text
4068	printf "\n *** email notification sent to \"$email_notification\" "
4069	fi
4070	fi
4071
4072
4073
4074	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4075	cd $HOME
4076	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4077
4078	else
4079
4080
4081	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4082	# CHENDE AKTIONEN DURCHGEFUEHRT
4083
4084	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4085	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
4086	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4087	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4088	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4089	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4090	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4091	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4092	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4093	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4094	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4095	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4096	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4097	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4098	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4099	if [[ $use_openmp = true ]]
4100	then
4101	mrun_com=${mrun_com}" -O"
4102	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $threads_per_task"
4103	else
4104	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4105	fi
4106	[[ $store_on_archive_system = false ]] && mrun_com=${mrun_com}" -A"
4107	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4108	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4109	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4110	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4111	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4112	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4113	if [[ $do_remote = true ]]
4114	then
4115	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4116	fi
4117
4118
4119	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4120	jobfile=jobfile.$RANDOM
4121
4122
4123	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4124	echo "mkdir $TEMPDIR" >> $jobfile
4125	echo "cd $TEMPDIR" >> $jobfile
4126
4127
4128	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4129	if [[ $do_trace = true ]]
4130	then
4131	echo "set -x" >> $jobfile
4132	else
4133	echo "set +vx" >> $jobfile
4134	fi
4135
4136
4137	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4138	# DATEI FUER DEN JOB
4139	if [[ $( echo $host \| cut -c1-5 ) = lcsgi ]]
4140	then
4141
4142	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4143	# KOPIEREN
4144	if [[ $restart_run != true ]]
4145	then
4146	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4147	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4148	fi
4149
4150	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4151	echo "set -x" >> $jobfile
4152	echo "scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4153	echo "export SOURCES_COMPLETE=true" >> $jobfile
4154
4155	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4156	# ARBEITSVERZEICHNIS VERSCHIEBEN
4157	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4158	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4159	echo "execute_mrun=true" >> $jobfile
4160	echo " " >> $jobfile
4161
4162	else
4163
4164	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4165	# SOWIE GEGEBENENFALLS DES MAKEFILES
4166	if [[ $do_compile = true ]]
4167	then
4168
4169	source_catalog=SOURCES_FOR_RUN_$fname
4170
4171	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4172	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4173	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4174	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4175	echo "export SOURCES_COMPLETE=true" >> $jobfile
4176	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4177
4178	for filename in $source_list
4179	do
4180	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4181	echo "cat > $filename << \"%END%\"" >> $jobfile
4182	cat $source_catalog/$filename >> $jobfile
4183	echo " " >> $jobfile
4184	echo "%END%" >> $jobfile
4185	echo " " >> $jobfile
4186	done
4187
4188	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4189	echo "cat > Makefile << \"%END%\"" >> $jobfile
4190	cat $source_catalog/Makefile >> $jobfile
4191	echo " " >> $jobfile
4192	echo "%END%" >> $jobfile
4193	echo " " >> $jobfile
4194
4195	echo "cd - > /dev/null" >> $jobfile
4196
4197	fi
4198
4199
4200	# ABSPEICHERN DER KONFIGURATIONSDATEI
4201	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4202	echo "cat > $config_file << \"%END%\"" >> $jobfile
4203	cat $config_file >> $jobfile
4204	echo "%END%" >> $jobfile
4205	echo " " >> $jobfile
4206
4207
4208	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
4209	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4210	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
4211	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
4212	echo "%END%" >> $jobfile
4213	if [[ $host = lctit ]]
4214	then
4215	echo "sed 's/bin\/ksh/home2\/usr5\/mkanda\/pub\/ksh/' < $mrun_script_name > mrun_new" >> $jobfile
4216	echo "mv mrun_new $mrun_script_name" >> $jobfile
4217	fi
4218	echo "chmod u+x $mrun_script_name" >> $jobfile
4219	echo "execute_mrun=true" >> $jobfile
4220	echo " " >> $jobfile
4221
4222	fi
4223
4224
4225	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
4226	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
4227	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
4228	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
4229	if [[ $do_remote = true ]]
4230	then
4231	(( i = 0 ))
4232	while (( i < iin ))
4233	do
4234	(( i = i + 1 ))
4235	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
4236	if [[ "${transin[$i]}" = job ]]
4237	then
4238	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
4239	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
4240	echo " " >> $jobfile
4241	echo "%END%" >> $jobfile
4242	else
4243	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
4244	fi
4245
4246	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
4247	echo "if [[ \$? = 1 ]]" >> $jobfile
4248	echo "then" >> $jobfile
4249	echo " echo \" \" " >> $jobfile
4250	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
4251	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
4252	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
4253	echo " execute_mrun=false" >> $jobfile
4254	echo "fi" >> $jobfile
4255	done
4256	fi
4257
4258	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
4259	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
4260	echo "LOCAL_PWD=$working_directory" >> $jobfile
4261	echo "export LOCAL_PWD" >> $jobfile
4262
4263	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
4264	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
4265	echo "export LOCAL_MRUN_PATH" >> $jobfile
4266
4267	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
4268	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
4269	then
4270	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
4271	fi
4272
4273	# MRUN AUF ZIELRECHNER AUFRUFEN
4274	echo "set -x" >> $jobfile
4275	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
4276
4277	echo 'ls -al; echo `pwd`' >> $jobfile
4278	echo "cd \$HOME" >> $jobfile
4279	echo "rm -rf $TEMPDIR" >> $jobfile
4280
4281
4282
4283
4284	# JOB PER SUBJOB STARTEN
4285	if [[ $silent = false ]]
4286	then
4287	printf "\n "
4288	else
4289	printf "\n\n"
4290	fi
4291
4292	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog $jobfile
4293	rm -rf $jobfile
4294
4295
4296	fi # ENDE REMOTE-TEIL
4297
4298
4299
4300	# ENDE DER PROZEDUR

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