Home

Context Navigation

source: palm/trunk/SCRIPTS/mrun @ 224

Last change on this file since 224 was 223, checked in by raasch, 16 years ago
usage of totalview debugger implemented in mrun
Property svn:keywords set to `Id Rev`
File size: 157.0 KB

Line
1	#!/bin/ksh
2	# mrun - Plot-Shellskript
3	# $Id: mrun 223 2009-01-13 16:31:47Z letzel $
4
5	# Prozedur zum Starten von Modellaeufen
6
7	# letzte Aenderung:
8	# 03/03/94 - Siggi - Entwicklungsbeginn
9	# 21/03/94 - Siggi - Entwicklungsabschluss (Version 1.0)
10	# 09/12/94 - Siggi - allexport unterbunden; statt dessen werden jetzt ein-
11	# zelne Variable exportiert. Dies ist noetig, weil an-
12	# sonsten irgendein Speicher ueberlaeuft und von mrun
13	# aufgerufene Programme (z.B. stageout) mit Fehlern
14	# abbrechen (too many arguments)
15	# 20/06/95 - Siggi - noclobber muss explizit abgeschaltet, da jetzt
16	# defaultmaessig im RRZN-Profile eingeschaltet
17	# 10/06/97 - Siggi - Zusaetzliche Option -C bei cpp, damit // nicht
18	# wegfallen
19	# 25/04/00 - Siggi - Version 1.5
20	# remote_addres und remote_user in return_addres bzw.
21	# return_username umbenannt, return_username wird dem
22	# mrun-Aufruf im Job ueber Option -U mitgegeben.
23	# Neue Variable remote_username, die beim interaktiven
24	# mrun-Aufruf zwingend ueber die neue Option -u oder
25	# in der Konfigurationsdatei angegeben werden muss.
26	# 08/02/01 - Siggi - Alle mrun-Meldungen ins englische uebersetzt,
27	# Version 1.7
28	# 05/05/02 - Siggi - Uebersetzungen mittels make-Mechanismus moeglich
29	# 21/11/02 - Siggi - ENV-Variable XLFRTEOPTS wird vor Ausfuehrung auf
30	# IBM gesetzt, um Record-Laenge der NAMELIST-Dateien,
31	# zu bestimmen; Praeprozessoroptionen haben nun alle
32	# die Form -Dtext=text, weil auf IBM sonst text durch
33	# die leere Zeichenkette ersetzt wird
34	# 01/08/03 - Siggi - Test of implementing dvrp+1PE on ibm
35	# 07/01/04 - Siggi - additional preprocessor directive for ibm included
36	# (-D$OMP=OMP) in order to avoid problems with
37	# OMP_NUM_THREADS
38	# 04/01/05 - Siggi - archiving on hanni and berni is done in separate
39	# tar files, one for each node used
40	# 07/01/04 - Siggi - old code for t3e, vpp and hpcs eliminated
41	# 09/01/05 - Siggi - workaround for getting the IP address on gfdl3
42	# 17/01/05 - Siggi - job for data transfer to local machine now within
43	# job class c1 (HLRN)
44	# 27/01/05 - Siggi - IP address workaround for gfdl3 removed
45	# 28/01/05 - Siggi - tar-filenames on $PERM (HLRN) now include the
46	# base filename and cycle number
47	# 16/02/05 - Gerald - hababai validated
48	# 14/03/05 - Siggi - abort on NEC after first runtime error (F_ERRCNT)
49	# 29/03/05 - Marcus - berni*-en0 validated
50	# 21/04/05 - Siggi - transfer-job-protocol for avs-data is no more stored
51	# 24/04/05 - Siggi - netcdf support on lcmuk
52	# 25/04/05 - Siggi - netcdf support on gfld3 (decalpha)
53	# 11/05/05 - Siggi - files with non-numeric extensions (.xxx after cycle
54	# number) can now be used within interactive runs
55	# 12/05/05 - Siggi - netcdf support on ibm
56	# 13/05/05 - Siggi - error in tar-filenames on $PERM (HLRN) removed
57	# 18/05/05 - Siggi - netcdf support on nec
58	# 24/05/05 - Siggi - netcdf support on ibms
59	# 14/06/05 - Siggi - sleep interval after submit of restart job increased
60	# to 30 seconds
61	# 28/06/05 - Siggi - bora adjusted to new intel compiler (LD_LIBRARY_
62	# PATH is temporarily set)
63	# 07/09/05 - Siggi - setting of MP_EAGER_LIMIT switched off because it
64	# caused warnings in the job protocol
65	# 20/10/05 - Siggi - update of netcdf-version on decalpha (gfdl3)
66	# 25/10/05 - Siggi - error in listing files for getting the cycle number
67	# removed
68	# 26/10/05 - Siggi - new paths for dvrp-library, transfer of catalogs
69	# realized by file attribute trpe
70	# 28/10/05 - Siggi - if existing, the file extension is output in case
71	# of missing input file - no job abort in case of
72	# missing input files with file extensions
73	# (preliminary solution)
74	# 31/10/05 - Siggi - data transfer from nech now within seperate job
75	# 04/11/05 - Siggi - netcdf 3.6.0-p1 on ibmh/ibmb
76	# 07/12/05 - Siggi - gallego and elephanta admitted
77	# 30/12/05 - Siggi - gfdl5 (ibmy) admitted
78	# 10/01/06 - Siggi - cpp directive for NetCDF 64bit support
79	# 20/01/06 - Siggi - cpp directive for ibmy
80	# 09/02/06 - Siggi - ibmy admitted for batch mode
81	# 13/04/06 - Siggi - ostria admitted
82	# 18/04/06 - Siggi - usage of OpenMP implemented (additional option -O)
83	# 10/05/06 - Siggi - environment variable XLSMPOPTS set on IBM for
84	# optimization of OpenMP runs (option stacksize is
85	# necessary for large gridpoint numbers because
86	# otherwise a segmentation fault occurs)
87	# 23/05/05 - Siggi - lctit (SUN Fire X4600) admitted
88	# 21/08/06 - Siggi - standard mrun path on scirocco is as on bora
89	# 23/08/06 - Siggi - netcdf support for scirocco (notebook)
90	# 20/09/06 - Marcus - add DVRP library on nech
91	# 24/10/06 - Siggi - Environment variables for PALM steering are written
92	# on local NAMELIST file ENVPAR
93	# 24/11/06 - Siggi - levanto admitted, maestro switched to ifc 9.1
94	# 28/11/06 - Siggi - call to interpret_config.x_levanto because of SuSe 10
95	# 06/02/07 - Siggi - add DVRP library on lcmuk
96	# 07/02/07 - Siggi - revision of source code handling, source code is
97	# now expected in directory given by source_path and
98	# not in the current working directory, source code
99	# files provided in add_source_path are allways
100	# compiled, source code to be compiled is allways
101	# sampled in SOURCES_FOR_RUN_$fname which is a
102	# subdirectory of the current working directory,
103	# -s TEST changed to -s WRITE_PERMIT or -s WP,
104	# adapted for RIAM (neck)
105	# bugfix for cycle number of output file (extout)
106	# all hpmuk-related code removed
107	# 14/02/07 - Siggi - dvrp support for neck added
108	# 28/02/07 - Siggi - empty lines in configuration file are accepted
109	# mrun_path replaced by PALM_BIN,
110	# all machines are calling interpret_config.x
111	# 14/03/07 - Siggi - fimm admitted, revision number added to terminal
112	# output
113	# 16/03/07 - Siggi - adjustments for lctit
114	# 29/03/07 - Siggi - global revision transfered to batch job by new
115	# option -G
116	# 30/03/07 - Siggi - compilation "by hand" removed, cpp-directives/options
117	# + netcdf/dvrp-options are read from configuration
118	# file, host identifier (local_host) is read from
119	# config file, code related to ftp filetransfer
120	# removed (incl. option -f)
121	# 19/06/07 - Siggi - time limit for cdata jobs increased
122	# 25/07/07 - Siggi - two sets of executables can be started on lcmuk,
123	# if new option -Y (coupling) is given,
124	# output of executables to aout_output removed,
125	# messages are immediately written to stdout instead
126	# 03/08/07 - Marcus - add XOPT="-X $numprocs" for lcfimm
127	# 09/08/07 - Marcus - workaround on lcfimm to propagate environment
128	# variables out to the nodes in coupled mode -disabled-
129	# 13/08/07 - Marcus - start local restart jobs per ssh on lcfimm
130	# 28/08/07 - Marcus - completely remove workaround on lcfimm to propagate
131	# environment variables out to the nodes in coupled mode
132	# 15/10/07 - Siggi - Preliminary adjustments for lctit, based on Jin's
133	# suggestions
134	# 19/10/07 - Marcus - further adjustments for lctit: add new optional
135	# argument -g group_number, admit all sla* node_usage
136	# queues
137	# 30/10/07 - Marcus - further adjustments for queues on lctit
138	# 14/02/08 - Bjoern - link of restart files with long file name possible
139	# 28/02/08 - Marcus - If environment variable link_local_output is set to
140	# true, mrun tries "ln -f" on local output and resorts
141	# to "cp" or "cp -r" on error
142	# 15/04/08 - Siggi - argument -c introduced to most of the subjob calls,
143	# which allows the user to choose his own job catalog
144	# by setting job_catalog in the configuration file
145	# (default is ~/job_queue),
146	# workaround for mpiexec with -env option,
147	# adjustments for lcxt4 (Bergen Center for Computational
148	# Science)
149	# 22/05/08 - Marcus - If environment variable link_local_input is set to
150	# true, mrun tries "ln -f" on local input and resorts
151	# to "cp" or "cp -r" on error
152	# 27/05/08 - Siggi - PATH is set to PALM_BIN everywhere (missing so far)
153	# 14/07/08 - Siggi - adjustments for lcsgih
154	# 08/08/08 - Marcus - typo removed in lcxt4 branch
155	# 17/09/08 - Siggi - restart mechanism adjusted for lcsgi
156	# 02/10/08 - BjornM - argument "-Y" modified, adjustments for coupled runs
157	# 21/10/08 - Siggi - bugfix for the case that -K has more than one
158	# argument
159	# 08/11/08 - Siggi - bugfix for depository path settings in configuration
160	# file
161	# 11/11/08 - Siggi - rules for using user code files changed: user
162	# code splitted into one file per subroutine,
163	# user can provide his/her own makefile, only
164	# default source-code filenames are allowed
165	# 14/11/08 - Siggi - cond1 and cond2 are part of the depository name
166	# 08/01/09 - Siggi - mpi module on sgi machines to be used can be set
167	# with environment variable mpilib
168	# 13/01/09 - Siggi - totalview on hice/bice can be used in debug mode
169	# using environment variable totalview
170
171
172
173	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
174
175	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
176	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
177	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
178
179	AddFilenames=""
180	additional_conditions=""
181	add_source_path=""
182	afname=""
183	archive_save=true
184	archive_system=none
185	compiler_name=""
186	cond1=""
187	cond2=""
188	config_file=.mrun.config
189	coupled_dist=""
190	coupled_mode="mpi1"
191	cpp_opts=""
192	cpp_options=""
193	cpumax=0
194	cpurest=0
195	delete_temporary_catalog=true
196	do_batch=false
197	do_compile=true
198	do_remote=false
199	do_stagein=true
200	do_stageout=true
201	do_trace=false
202	email_notification=""
203	exclude=""
204	executable=""
205	execution_error=false
206	fimm=false
207	fname=test
208	fromhost=""
209	global_revision=""
210	group_number=none
211	host=""
212	host_file=""
213	hp=""
214	ignore_archive_error=false
215	input_list=""
216	interpreted_config_file=""
217	job_catalog="~/job_queue"
218	job_on_file=""
219	keep_data_from_previous_run=false
220	link_local_input=false
221	link_local_output=false
222	localhost_realname=$(hostname)
223	local_compile=false
224	locat=normal
225	mainprog=""
226	makefile=""
227	mc=$0
228	while [[ $(echo $mc \| grep -c "/") != 0 ]]
229	do
230	mc=`echo $mc \| cut -f2- -d"/"`
231	done
232	module_files=""
233	mrun_script_name=$mc
234	netcdf_inc=""
235	netcdf_lib=""
236	netcdf_support=false
237	node_usage=default
238	numprocs=""
239	numprocs_atmos=0
240	numprocs_ocean=0
241	OOPT=""
242	openmp=false
243	output_list=""
244	package_list=""
245	punkte="..........................................................."
246	queue=none
247	read_from_config=""
248	restart_run=false
249	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
250	if [[ $return_addres = 130.75.105.158 ]]
251	then
252	return_addres=172.20.25.41
253	echo "+++ WARNING: return_addres changed to $return_addres !!!!!"
254	fi
255	# if [[ $return_addres = 210.117.65.1 ]]
256	# if [[ $(nslookup `hostname` 2>&1 \| grep -c 210.117.65.1) = 1 ]]
257	# then
258	# [[ $localhost_realname = gfdl3.yonsei.ac.kr ]] && return_addres=165.132.26.56
259	# fi
260	return_password=""
261	return_username=$LOGNAME
262	remotecall=false
263	remote_username=""
264	run_coupled_model=false
265	run_mode=""
266	scirocco=false
267	store_on_archive_system=true
268	striche=" ----------------------------------------------------------------------------"
269	silent=false
270	source_list=""
271	source_path=SOURCE
272	tasks_per_node=""
273	threads_per_task=1
274	tmpcreate=false
275	tmp_data_catalog=""
276	transfer_problems=false
277	usern=$LOGNAME
278	working_directory=`pwd`
279	TOPT=""
280	XOPT=""
281	zeit=$( date \| cut -c 12-19 )
282
283	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
284	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
285
286	typeset -R30 calltime
287	typeset -L20 spalte1
288	typeset -L40 spalte2
289	typeset -L60 spalte3
290	typeset -L35 string1=`date`
291	typeset -L12 string2=$usern
292	typeset -L12 string3=$localhost_realname
293	typeset -L12 string4
294	typeset -L12 string5
295	typeset -L30 version="MRUN 2.0 Rev$Rev: 223 $"
296
297
298
299	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
300	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
301
302	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
303	# EXPORTIERT WERDEN
304	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
305	export group_number input_list memory numprocs output_list queue run_mode
306
307
308
309	# FEHLERBEHANDLUNG
310	# BEI EXIT:
311	trap 'rm -rf $working_directory/tmp_mrun
312	if [[ $locat != localhost ]]
313	then
314	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
315	# then
316	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
317	#MRUN-calls on $localhost
318	#
319	#date and time user localhost remotehost termination mrun-command
320	#--------------------------------------------------------------------------------------------------------------------
321	#%STATEND%
322	# chmod 666 ${mrun_path}/statistik/mrun_statistik
323	# fi
324	#
325	# # EINTRAG IN DIE STATISTIK-DATEI
326	# string4=$host
327	# string5=$locat
328	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
329	# then
330	# if [[ $do_batch = true ]]
331	# then
332	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
333	# else
334	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
335	# fi
336	# fi
337	echo " " > /dev/null
338	fi
339
340	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
341	then
342
343	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
344	(( i = 0 ))
345	while (( i < iec ))
346	do
347	(( i = i + 1 ))
348	printf "\n *** Execution of ERROR-command:\n"
349	printf " >>> ${err_command[$i]}\n"
350	eval ${err_command[$i]}
351	done
352	if [[ -n $interpreted_config_file ]] then
353	rm -rf $interpreted_config_file
354	fi
355	if [[ -n .mrun_environment ]] then
356	rm -rf .mrun_environment
357	fi
358	if [[ $tmpcreate = true ]]
359	then
360	printf "\n *** Contents of \"$TEMPDIR\":\n"
361	ls -al; cd
362	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
363	fi
364	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
365	then
366	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
367	fi
368	printf "\n\n+++ MRUN killed \n\n"
369	elif [[ $locat != control_c ]]
370	then
371	printf "\n\n --> all actions finished\n\n"
372	printf " Bye, bye $usern !!\n\n"
373	fi' exit
374
375
376	# BEI TERMINAL-BREAK:
377	trap 'rm -rf $working_directory/tmp_mrun
378	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
379	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
380	then
381	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
382	fi
383	printf "\n+++ MRUN killed by \"^C\" \n\n"
384	locat=control_c
385	exit
386	' 2
387
388
389	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
390	# BEEN SET
391	if [[ "$PALM_BIN" = "" ]]
392	then
393	printf "\n +++ environment variable PALM_BIN has not been set"
394	printf "\n please set it to the directory where the PALM scripts are located"
395	locat=palm_bin; exit
396	fi
397	export PATH=$PALM_BIN:$PATH
398
399
400
401	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
402	# FUER FOLGEJOBS BENOETIGT WIRD
403	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:Op:P:q:r:R:s:St:T:u:U:vxX:Y: option
404	do
405	case $option in
406	(a) afname=$OPTARG;;
407	(A) store_on_archive_system=false; mc="$mc -A";;
408	(b) do_batch=true; mc="$mc -b";;
409	(B) delete_temporary_catalog=false; mc="$mc -B";;
410	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
411	(C) restart_run=true; mc="$mc -C";;
412	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
413	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
414	(F) job_on_file="-D"; mc="$mc -F";;
415	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
416	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
417	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
418	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
419	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
420	(I) ignore_archive_error=true; mc="$mc -I";;
421	(k) keep_data_from_previous_run=true; mc="$mc -k";;
422	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
423	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
424	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
425	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
426	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
427	(O) use_openmp=true; mc="$mc -O";;
428	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
429	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
430	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
431	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
432	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
433	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
434	(S) read_from_config=false; mc="$mc -S";;
435	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
436	(T) tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
437	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
438	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
439	(v) silent=true; mc="$mc -v";;
440	(x) do_trace=true;set -x; mc="$mc -x";;
441	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
442	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
443	(\?) printf "\n +++ unknown option $OPTARG \n"
444	printf "\n --> type \"$0 ?\" for available options \n"
445	locat=parameter;exit;;
446	esac
447	done
448
449
450	# EVTL. POSITIONSPARAMETER EINLESEN
451	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
452	shift OPTIND-1
453
454
455	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
456	if [[ "$1" = "?" ]]
457	then
458	(printf "\n *** mrun can be called as follows:\n"
459	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -Y.. <modus>\n"
460	printf "\n Description of available options:\n"
461	printf "\n Option Description Default-Value"
462	printf "\n -a base name of input files equiv. -d"
463	printf "\n -A no archiving when using file-attribute fl"
464	printf "\n -b batch-job on local machine ---"
465	printf "\n -B do not delete temporary directory at end ---"
466	printf "\n -c configuration file .mrun.config"
467	printf "\n -d base name of files attached to program test"
468	printf "\n -D preprocessor(cpp)-directives \"\" "
469	printf "\n -F create remote job file only ---"
470	printf "\n -h execution host $localhost_realname"
471	printf "\n -i INPUT control list \"\" "
472	printf "\n -I archiving errors of previous batch-jobs"
473	printf "\n will be ignored"
474	printf "\n -k keep data from previous run"
475	printf "\n -K additional conditions for controling"
476	printf "\n usage of conditional code and"
477	printf "\n env-variables in configuration file \"\" "
478	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
479	printf "\n -M Makefile name Makefile"
480	printf "\n -n node usage (shared/not_shared) depending on -h"
481	printf "\n -o OUTPUT control list \"\" "
482	printf "\n -O use OpenMP ---"
483	printf "\n -p software package list \"\" "
484	printf "\n -q queue \"$queue\" "
485	printf "\n -r run control list (combines -i -o) \"\" "
486	printf "\n -s filenames of routines to be compiled \"\" "
487	printf "\n must end with .f, .f90, .F, or .c !"
488	printf "\n use \"..\" for more than one file and wildcards"
489	printf "\n -s TEST compiles all files with w-permit"
490	printf "\n -S config file interpreted by shellscript ---"
491	printf "\n -t allowed cpu-time in seconds (batch) 0"
492	printf "\n -T tasks per node depending on -h"
493	printf "\n -u username on remote machine \"\" "
494	printf "\n -v no prompt for confirmation ---"
495	printf "\n -x tracing of mrun for debug purposes ---"
496	printf "\n -X # of processors (on parallel machines) 1"
497	printf "\n -Y run coupled model, \"#1 #2\" with"
498	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
499	printf "\n "
500	printf "\n Possible values of positional parameter <modus>:"
501	printf "\n \"?\" - this outline \n\n") \| more
502	exit
503	elif [[ "$1" != "" ]]
504	then
505	printf "\n +++ positional parameter $1 unknown \n"
506	locat=parameter; exit
507	fi
508
509
510
511	# KURZE STARTMELDUNG
512	printf "\n*** $version "
513	printf "\n will be executed. Please wait ..."
514
515
516
517	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
518	if [[ ! -f $config_file ]]
519	then
520	printf "\n\n +++ configuration file: "
521	printf "\n $config_file"
522	printf "\n does not exist"
523	locat=connect; exit
524	fi
525
526
527	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
528	line=""
529	grep "%host_identifier" $config_file > tmp_mrun
530	while read line
531	do
532	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
533	then
534	HOSTNAME=`echo $line \| cut -d" " -s -f2`
535	host_identifier=`echo $line \| cut -d" " -s -f3`
536	if [[ $localhost_realname = $HOSTNAME ]]
537	then
538	localhost=$host_identifier
539	break
540	fi
541	fi
542	done < tmp_mrun
543
544	if [[ "$localhost" = "" ]]
545	then
546	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
547	printf "\n for local host \"$localhost_realname\"."
548	printf "\n Please add line"
549	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
550	printf "\n to the configuration file."
551	locat=localhost; exit
552	fi
553
554
555	# HOSTSPEZIFISCHE VARIABLEN SETZEN
556	case $localhost_realname in
557	(breg-en0\|berni-en0) archive_system=tivoli;;
558	(cs*) archive_system=ut;;
559	(fimm.bccs.uib.no) fimm=true;;
560	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
561	(hreg-en0\|hanni-en0) archive_system=tivoli;;
562	(scirocco) scirocco=true;;
563	esac
564
565
566
567	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
568	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
569	[[ "$afname" = "" ]] && afname=$fname
570
571
572	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
573	if [[ "$run_mode" != "" ]]
574	then
575	input_list="$input_list $run_mode"
576	output_list="$output_list $run_mode"
577	fi
578
579
580	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
581	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
582	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
583	# STARTET)
584	if [[ "$fromhost" = "" ]]
585	then
586	fromhost=$localhost
587	fi
588
589
590	# PRUEFEN, OB MRUN NUR TESTWEISE AUF DER LOKALEN MASCHINE KOMPILIEREN SOLL
591	if [[ "$source_list" = LOCAL_COMPILE_TEST ]]
592	then
593	source_list=TEST
594	local_compile=true
595	host=$localhost
596	fi
597
598
599	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
600	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
601	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
602	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
603	if [[ -n $host && "$host" != $localhost ]]
604	then
605	do_batch=true
606	do_remote=true
607	case $host in
608	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|nech\|neck\|lcsgib\|lcsgih\|lctit\|unics\|lcxt4) true;;
609	(*) printf "\n"
610	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
611	printf "\n is not available"
612	locat=nqs; (( iec = 0 )); exit;;
613	esac
614	else
615	host=$localhost
616	fi
617
618
619	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
620	if [[ -n $additional_conditions ]]
621	then
622	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
623	cond1=`echo $additional_conditions \| cut -d" " -f1`
624	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
625	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
626	if [[ -n $dummy ]]
627	then
628	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
629	locat=options; exit
630	fi
631	fi
632
633
634	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
635	if [[ $run_coupled_model = true ]]
636	then
637
638	if [[ -n $coupled_dist ]]
639	then
640
641	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
642	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
643
644	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
645	then
646
647	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
648	printf "\n PEs (total) : $numprocs"
649	printf "\n PEs (atmosphere): $numprocs_atmos"
650	printf "\n PEs (ocean) : $numprocs_ocean"
651	locat=coupling; exit
652
653	# REARRANGING BECAUSE CURRENTLY ONLY 1:1 TOPOLOGIES ARE SUPPORTED
654	# THIS SHOULD BE REMOVED IN FUTURE
655	elif (( $numprocs_ocean != $numprocs_atmos ))
656	then
657
658	printf "\n +++ currently only 1:1 topologies are supported"
659	printf "\n PEs (total) : $numprocs"
660	printf "\n PEs (atmosphere): $numprocs_atmos"
661	printf "\n PEs (ocean) : $numprocs_ocean"
662	(( numprocs_atmos = $numprocs / 2 ))
663	(( numprocs_ocean = $numprocs / 2 ))
664	printf "\n +++ rearranged topology to $numprocs_atmos:$numprocs_ocean"
665
666	fi
667
668	else
669
670	(( numprocs_ocean = $numprocs / 2 ))
671	(( numprocs_atmos = $numprocs / 2 ))
672
673	fi
674	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
675
676	# GET coupled_mode FROM THE CONFIG FILE
677	line=""
678	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
679	while read line
680	do
681	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && ( $(echo $line \| cut -d" " -s -f4) = $cond1 \|\| $(echo $line \| cut -d" " -s -f4) = $cond2 ) ]]
682	then
683	coupled_mode="mpi2"
684	fi
685	done < tmp_mrun
686
687	fi
688
689
690	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
691	# ARCHIVIERUNG FEHLGESCHLAGEN IST
692	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
693	then
694	if [[ $ignore_archive_error = false ]]
695	then
696	printf "\n +++ data archiving of previous run failed"
697	printf "\n see directory \~/job_queue on remote machine"
698	locat=archive; exit
699	else
700	printf "\n +++ warning: data archiving in a previous run failed"
701	printf "\n MRUN continues, trying to get backup copy"
702	fi
703	fi
704
705
706
707	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
708	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
709	if [[ "$read_from_config" = false ]]
710	then
711
712	[[ $silent = false ]] && printf "\n Reading the configuration file... "
713	while read zeile
714	do
715	[[ $silent = false ]] && printf "."
716
717
718	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
719	# ERSETZEN
720	eval zeile=\"$zeile\"
721
722
723	# INTERPRETATION DER ZEILE
724	if [[ "$(echo $zeile)" = "" ]]
725	then
726	# LEERZEILE, KEINE AKTION
727	continue
728
729	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
730	then
731
732	# ZEILE IST KOMMENTARZEILE
733	true
734
735	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
736	then
737
738	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
739	zeile=$(echo $zeile \| cut -c2-)
740	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
741	var=`echo $zeile \| cut -d" " -f1`
742	value=`echo $zeile \| cut -d" " -s -f2`
743	for_host=`echo $zeile \| cut -d" " -s -f3`
744	for_cond1=`echo $zeile \| cut -d" " -s -f4`
745	for_cond2=`echo $zeile \| cut -d" " -s -f5`
746
747	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
748	then
749
750	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
751	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
752	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
753
754
755	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
756	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
757	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
758	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
759	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
760	# KONFIGURATIONSDATEI
761	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
762	then
763	eval $var=\$value
764
765	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
766	if [[ $do_trace = true ]]
767	then
768	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
769	fi
770	fi
771
772	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
773	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
774	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
775	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
776	if [[ $var = host ]]
777	then
778	if [[ -n $host && "$host" != $localhost ]]
779	then
780	do_batch=true
781	do_remote=true
782	case $host in
783	(ibm\|ibms\|ibmy\|lcsgib\|lcsgih\|lctit\|nech\|neck\|unics\|lcxt4) true;;
784	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
785	printf "\n is not available"
786	locat=nqs; exit;;
787	esac
788	else
789	host=$localhost
790	fi
791	fi
792
793	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
794	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
795	# DEN PROGRAMMEN BENOETIGT WERDEN
796	export $var
797	fi
798
799
800
801
802	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
803	then
804
805	# ZEILE DEFINIERT ERROR-KOMMANDO
806	(( iec = iec + 1 ))
807	zeile=$(echo $zeile \| cut -c4-)
808	err_command[$iec]="$zeile"
809
810	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
811	then
812
813	# ZEILE DEFINIERT INPUT-KOMMANDO
814	(( iic = iic + 1 ))
815	zeile=$(echo $zeile \| cut -c4-)
816	in_command[$iic]="$zeile"
817
818	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
819	then
820
821	# ZEILE DEFINIERT OUTPUT-KOMMANDO
822	(( ioc = ioc + 1 ))
823	zeile=$(echo $zeile \| cut -c4-)
824	out_command[$ioc]="$zeile"
825
826	else
827
828	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
829	# s2a: in/out - Feld
830	# s2b: loc - Feld (optional)
831	# s2c: tr/ar - Feld (optional)
832	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
833	s1=`echo $zeile \| cut -d" " -f1`
834	s2=`echo $zeile \| cut -d" " -s -f2`
835	s2a=$(echo $s2 \| cut -d":" -f1)
836	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
837	then
838	s2b=""
839	s2c=""
840	else
841	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
842	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
843	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
844	fi
845	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
846	s3=`echo $zeile \| cut -d" " -f3`
847	s4=`echo $zeile \| cut -d" " -s -f4`
848	s5=`echo $zeile \| cut -d" " -s -f5`
849	s6=`echo $zeile \| cut -d" " -s -f6`
850
851
852	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
853	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
854	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
855	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
856	# HANDEN SEIN MUSS (D.H. s2b = loc)
857	IFSALT="$IFS"; IFS="$IFS:"
858	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
859	then
860	found=false
861	for actual in $input_list
862	do
863	for formal in $s3
864	do
865	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
866	done
867	done
868	if [[ $found = true ]]
869	then
870	(( iin = iin + 1 ))
871	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
872	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
873	extin[$iin]=$s6
874	fi
875	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
876	then
877	found=false
878	for actual in $output_list
879	do
880	for formal in $s3
881	do
882	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
883	done
884	done
885	if [[ $found = true ]]
886	then
887	(( iout = iout + 1 ))
888	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
889	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
890	fi
891	elif [[ "$s2a" != in && "$s2a" != out ]]
892	then
893	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
894	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
895	locat=connect; exit
896	fi
897	IFS="$IFSALT"
898	fi
899	done < $config_file
900
901	else
902
903
904	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
905	[[ $silent = false ]] && printf "..."
906	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
907	export interpreted_config_file=.icf.$RANDOM
908
909
910
911	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
912	# VERFUEGUNG STELLEN
913	cat > .mrun_environment << %%END%%
914	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
915	config_file = '$config_file', do_remote = '$do_remote',
916	do_trace = '$do_trace', host = '$host',
917	input_list = '$input_list', icf = '$interpreted_config_file',
918	localhost = '$localhost', output_list = '$output_list' /
919
920	%%END%%
921
922	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
923	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
924	mrun_memory=$memory
925	mrun_group_number=$group_number
926	mrun_cpumax=$cpumax
927	mrun_numprocs=$numprocs
928
929	if [[ $localhost_realname = "gate" ]]
930	then
931	interpret_config_gate.x
932	else
933	interpret_config.x
934	fi
935	rm .mrun_environment
936
937
938	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
939	chmod u+x $interpreted_config_file
940	export PATH=$PATH:.
941	. $interpreted_config_file
942	rm $interpreted_config_file
943
944
945	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
946	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
947	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
948	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
949	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
950
951	fi
952
953
954	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
955	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
956	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
957	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
958	if [[ "$SOURCES_COMPLETE" = "" ]]
959	then
960
961	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
962	# VEREINBART WURDE
963	source_path=""
964	line=""
965	grep "%source_path" $config_file > tmp_mrun
966	while read line
967	do
968	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
969	then
970	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
971	then
972	global_source_path=`echo $line \| cut -d" " -f2`
973	fi
974	fi
975	done < tmp_mrun
976
977	line=""
978	found=false
979	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
980	while read line
981	do
982	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
983	then
984	if [[ $found = true ]]
985	then
986	printf "\n\n +++ more than one source path found in configuration file"
987	printf "\n for local host \"$localhost\" "
988	locat=source_path; exit
989	fi
990	source_path=`echo $line \| cut -d" " -f2`
991	found=true
992	fi
993	done < tmp_mrun
994	rm tmp_mrun
995
996	if [[ "$source_path" = "" ]]
997	then
998	if [[ "$global_source_path" != "" ]]
999	then
1000	source_path=$global_source_path
1001	else
1002	printf "\n\n +++ no source path found in configuration file"
1003	printf "\n for local host \"$localhost\" "
1004	locat=source_path; exit
1005	fi
1006	fi
1007	eval source_path=$source_path
1008
1009	if [[ ! -d $source_path ]]
1010	then
1011	printf "\n\n +++ source path \"$source_path\" on local host"
1012	printf "\n \"$localhost\" does not exist"
1013	locat=source_path; exit
1014	fi
1015
1016	fi
1017
1018
1019	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
1020	# DURCH OPTION -G MITGETEILT)
1021	if [[ "$global_revision" = "" ]]
1022	then
1023	global_revision=`svnversion $source_path 2>/dev/null`
1024	global_revision="Rev: $global_revision"
1025	fi
1026
1027
1028	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
1029	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
1030	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
1031	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
1032	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
1033	if [[ -n $host && "$host" != $localhost ]]
1034	then
1035	do_batch=true
1036	do_remote=true
1037	case $host in
1038	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|lcsgib\|lcsgih\|lctit\|nech\|neck\|unics\|lcxt4) true;;
1039	(*) printf "\n"
1040	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
1041	printf "\n is not available"
1042	locat=nqs; (( iec = 0 )); exit;;
1043	esac
1044	else
1045	host=$localhost
1046	fi
1047
1048
1049	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
1050	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1051	then
1052
1053	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
1054	if [[ ! -n $numprocs ]]
1055	then
1056	printf "\n"
1057	printf "\n +++ option \"-K parallel\" requires additional specification"
1058	printf "\n of the number of processors to be used by"
1059	printf "\n mrun-option \"-X\" or by environment-variable"
1060	printf "\n \"numprocs\" in the configuration file"
1061	locat=numprocs; (( iec = 0 )); exit
1062	fi
1063
1064	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
1065	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
1066	# GESAMTPROZESSORANZAHL IST
1067	if [[ $host = nech \|\| $host = neck \|\| $host = ibmh \|\| $host = ibmb \|\| $host = ibms ]]
1068	then
1069	[[ "$tasks_per_node" = "" ]] && tasks_per_node=6
1070	(( ival = $tasks_per_node ))
1071	(( pes = numprocs ))
1072	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1073	# then
1074	# (( pes = pes - 1 ))
1075	# fi
1076	(( ii = pes / ival ))
1077	if (( pes - ii * ival > 0 ))
1078	then
1079	printf "\n"
1080	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1081	printf "\n divisor of the total number of processors (option \"-X\")"
1082	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1083	locat=tasks_per_node; (( iec = 0 )); exit
1084	fi
1085	fi
1086
1087	# IBMY HAT NUR EINEN KNOTEN
1088	if [[ $host = ibmy ]]
1089	then
1090	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1091	then
1092	printf "\n"
1093	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1094	printf "\n total number of processors (option \"-X\")"
1095	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1096	locat=tasks_per_node; (( iec = 0 )); exit
1097	fi
1098	fi
1099
1100	# FALLS OPENMP PARALLELISIERUNG VERWENDET WERDEN SOLL, ANZAHL VON THREADS
1101	# SETZEN UND ZAHL DER TASKS PRO KNOTEN AUF 1 SETZEN
1102	if [[ $use_openmp = true ]]
1103	then
1104	threads_per_task=$tasks_per_node
1105	tasks_per_node=1
1106	fi
1107	OOPT="-O $threads_per_task"
1108	TOPT="-T $tasks_per_node"
1109
1110	# GESAMTZAHL DER KNOTEN BESTIMMEN
1111	if [[ "$tasks_per_node" != "" ]]
1112	then
1113	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1114	fi
1115
1116	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1117	# SETZEN
1118	if [[ $node_usage = default ]]
1119	then
1120	if [[ $host = ibms ]]
1121	then
1122	node_usage=shared
1123	elif [[ $host = lctit ]]
1124	then
1125	node_usage=sla3
1126	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1127	then
1128	node_usage=singlejob
1129	else
1130	node_usage=not_shared
1131	fi
1132	fi
1133
1134	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]]
1135	then
1136	printf "\n"
1137	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1138	printf "\n \"shared\" or \"not_shared\""
1139	locat=tasks_per_node; (( iec = 0 )); exit
1140	fi
1141
1142	fi
1143
1144	# PRUEFEN, OB HOSTFILE EXISTIERT
1145	if [[ -n $hostfile ]]
1146	then
1147	if [[ ! -f $hostfile ]]
1148	then
1149	printf "\n"
1150	printf "\n +++ hostfile \"$hostfile\" does not exist"
1151	locat=hostfile; exit
1152	fi
1153	fi
1154
1155	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1156	if [[ $host = ibmy && $do_remote = false ]]
1157	then
1158	if [[ ! -f $HOME/.rhosts ]]
1159	then
1160	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1161	printf "\n\n *** file:"
1162	printf "\n $HOME/.rhosts"
1163	printf "\n was created\n"
1164	fi
1165	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1166	then
1167	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1168	printf "\n\n *** file:"
1169	printf "\n $HOME/.rhosts"
1170	printf "\n was extended by the name of the current host\n"
1171	fi
1172	fi
1173
1174
1175
1176	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1177	if [[ $queue = none ]]
1178	then
1179	case $host in
1180	(ibmb) if [[ $node_usage = shared ]]
1181	then
1182	queue=cshare
1183	else
1184	queue=csolo
1185	fi;;
1186	(ibmh) if [[ $node_usage = shared ]]
1187	then
1188	queue=cshare
1189	else
1190	queue=csolo
1191	fi;;
1192	(ibmy) queue=parallel;;
1193	(lcsgib) queue=bigq;;
1194	(lcsgih) queue=bigq;;
1195	(lctit) queue=sla3;;
1196	(nech) queue=none;;
1197	(neck) queue=P;;
1198	(unics) queue=unics;;
1199	esac
1200	fi
1201
1202
1203	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1204	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1205	# ERMITTELN
1206	(( i = 0 ))
1207	while (( i < iin ))
1208	do
1209	(( i = i + 1 ))
1210	(( maxcycle = 0 ))
1211
1212	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1213	if [[ "${actionin[$i]}" = di ]]
1214	then
1215	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1216	# REM-MASCHINE AUSWERTEN
1217	eval filename=${pathin[$i]}/${endin[$i]}
1218	else
1219	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1220	# REM-MASCHINE AUSWERTEN
1221	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1222	fi
1223
1224	# PRUEFEN AUF VORHANDENSEIN
1225	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1226	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1227	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1228	then
1229	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1230	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1231	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1232	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1233	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1234	if [[ "${transin[$i]}" != "locopt" ]]
1235	then
1236	printf "\n\n +++ INPUT-file: "
1237	if [[ "${extin[$i]}" = "" ]]
1238	then
1239	printf "\n $filename"
1240	else
1241	printf "\n $filename.${extin[$i]}"
1242	fi
1243	printf "\n does not exist\n"
1244	locat=input; exit
1245	else
1246	transin[$i]="unavailable"
1247	fi
1248	else
1249
1250	# ZYKLUSNUMMER FESTSTELLEN
1251	ls -1 -d $filename > filelist 2>/dev/null
1252	ls -1 -d $filename.* >> filelist 2>/dev/null
1253	while read zeile
1254	do
1255	cycle=$(print $zeile \| cut -f2 -d".")
1256	if [[ "$cycle" = "$zeile" ]]
1257	then
1258	(( icycle = 0 ))
1259	elif [[ "$cycle" = "${extin[$i]}" ]]
1260	then
1261	(( icycle = 0 ))
1262	else
1263	(( icycle = $cycle ))
1264	fi
1265	if (( icycle > maxcycle ))
1266	then
1267	(( maxcycle = icycle ))
1268	file_to_be_used=$zeile
1269	fi
1270	done <filelist
1271	rm filelist
1272
1273	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1274	if (( maxcycle > 0 ))
1275	then
1276	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1277	then
1278	filename=${filename}.$maxcycle.${extin[$i]}
1279	else
1280	filename=${filename}.$maxcycle
1281	fi
1282	else
1283	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1284	then
1285	filename=${filename}.${extin[$i]}
1286	fi
1287	fi
1288
1289	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1290	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1291	absnamein[$i]=$filename
1292	if (( maxcycle > 0 ))
1293	then
1294	if [[ "${actionin[$i]}" = di ]]
1295	then
1296	frelin[$i]=${endin[$i]}.$maxcycle
1297	else
1298	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1299	fi
1300	else
1301	if [[ "${actionin[$i]}" = di ]]
1302	then
1303	frelin[$i]=${endin[$i]}
1304	else
1305	frelin[$i]=${afname}${endin[$i]}
1306	fi
1307	fi
1308
1309	fi
1310	done
1311
1312
1313	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1314	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1315	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1316	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1317	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1318	(( i = 0 ))
1319	while (( i < iout ))
1320	do
1321	(( i = i + 1 ))
1322	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1323	then
1324	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = trpe ]]
1325	then
1326	actionout[$i]=""
1327	elif [[ "${actionout[$i]}" = tra ]]
1328	then
1329	actionout[$i]=a
1330	fi
1331	(( maxcycle = 0 ))
1332	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1333	eval catalogname=${pathout[$i]}
1334	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1335	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1336	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1337	then
1338
1339	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1340	if cat /dev/null > $filename
1341	then
1342	rm $filename
1343	else
1344
1345	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1346	if [[ ! -d $catalogname ]]
1347	then
1348	if mkdir -p $catalogname
1349	then
1350	printf "\n\n *** directory:"
1351	printf "\n $catalogname"
1352	printf "\n was created\n"
1353	else
1354	printf "\n\n +++ OUTPUT-file:"
1355	printf "\n $filename"
1356	printf "\n cannot be created, because directory does not exist"
1357	printf "\n and cannot be created either"
1358	printf "\n"
1359	locat=output ; exit
1360	fi 2>/dev/null
1361	else
1362	printf "\n\n +++ OUTPUT-file:"
1363	printf "\n $filename"
1364	printf "\n cannot be created, although directory exists"
1365	printf "\n"
1366	locat=output ; exit
1367	fi
1368	fi 2>/dev/null
1369	else
1370
1371	# ZYKLUSNUMMER FESTSTELLEN
1372	ls -1 -d $filename > filelist 2>/dev/null
1373	ls -1 -d $filename.* >> filelist 2>/dev/null
1374	while read zeile
1375	do
1376	cycle=$(print $zeile \| cut -f2 -d".")
1377	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1378	then
1379	(( icycle = 1 ))
1380	else
1381	(( icycle = $cycle + 1 ))
1382	fi
1383	if (( icycle > maxcycle ))
1384	then
1385	(( maxcycle = icycle ))
1386	fi
1387	done <filelist
1388	rm filelist
1389	fi
1390
1391	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1392	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1393	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1394	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1395	if [[ "${actionout[$i]}" != a ]]
1396	then
1397	if (( maxcycle > 0 ))
1398	then
1399	filename=${filename}.$maxcycle
1400	if cat /dev/null > $filename
1401	then
1402	rm $filename
1403	else
1404	printf "\n +++ OUTPUT-file:"
1405	printf "\n $filename"
1406	printf "\n cannot be created"
1407	locat=output ; exit
1408	fi
1409	fi
1410	else
1411	(( maxcycle = maxcycle - 1 ))
1412	if (( maxcycle > 0 ))
1413	then
1414	filename=${filename}.$maxcycle
1415	fi
1416	fi
1417
1418	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1419	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1420	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1421	pathout[$i]=$filename
1422	if (( maxcycle > 0 ))
1423	then
1424	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1425	else
1426	frelout[$i]=${fname}${endout[$i]}
1427	fi
1428
1429	fi
1430	done
1431
1432
1433	# DAS DVRP-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1434	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1435	then
1436	if [[ "$dvrp_inc" = "" ]]
1437	then
1438	printf "\n\n +++ no value for \"dvrp_inc\" given in configuration file"
1439	printf "\n This is required for the dvrp_graphics package.\n"
1440	locat=dvrp; exit
1441	fi
1442	if [[ "$dvrp_lib" = "" ]]
1443	then
1444	printf "\n\n +++ no value for \"dvrp_lib\" given in configuration file"
1445	printf "\n This is required for the dvrp_graphics package.\n"
1446	locat=dvrp; exit
1447	fi
1448	fi
1449
1450
1451	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1452	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1453	# UEBERSETZT ZU WERDEN)
1454	if [[ "$mainprog" = "" && "$executable" = "" ]]
1455	then
1456	printf "\n +++ neither main program nor executable defined"
1457	locat=source; exit
1458	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1459	then
1460	printf "\n +++ main program as well as executable defined"
1461	locat=source; exit
1462	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1463	then
1464	do_compile=false
1465	fi
1466
1467
1468	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1469	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1470	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1471	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1472	then
1473	rm -rf SOURCES_FOR_RUN_$fname
1474	mkdir SOURCES_FOR_RUN_$fname
1475	fi
1476
1477
1478	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1479	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1480	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1481	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1482	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1483	then
1484
1485	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1486	[[ "$source_list" = WP ]] && source_list=WRITE_PERMIT
1487
1488
1489	# EVTL. ZU UEBERSETZENDE PROGRAMMTEILE DADURCH BESTIMMEN, DASS GEPRUEFT
1490	# WIRD, WELCHE DATEIEN WRITE-PERMIT BESITZEN (DATEIEN SOLLTEN DESHALB
1491	# UNTER RCS-KONTROLLE STEHEN). MIT DER VARIABLEN EXCLUDE KOENNEN
1492	# BESTIMMTE DATEIEN GRUNDSAETZLICH VON DER UEBERSETZUNG AUSGESCHLOSSEN
1493	# WERDEN. DIES IST NUR BEI MANUELLEM START VON MRUN DURCH DEN BENUTZER
1494	# MOEGLICH, DA BEI AUTOMATISCHEN RESTARTS TEST DURCH DIE TATSAECHLICH
1495	# ZU UBERSETZENDEN DATEIEN ERSETZT IST.
1496	# ALLE ERMITTELTEN DATEIEN WERDEN IM VERZEICHNIS SOURCES_FOR_RUN_...
1497	# GESAMMELT
1498	if [[ "$source_list" = WRITE_PERMIT ]]
1499	then
1500
1501	source_list=""
1502	cd $source_path
1503
1504
1505	# ALLE MOEGLICHEN QUELLCODEDATEIEN AUFLISTEN
1506	Names=$(ls -1 *.f90 2>&1)
1507	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && Filenames="$Names"
1508	Names=$(ls -1 *.F90 2>&1)
1509	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && Filenames="$Filenames $Names"
1510	Names=$(ls -1 *.F 2>&1)
1511	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && Filenames="$Filenames $Names"
1512	Names=$(ls -1 *.f 2>&1)
1513	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && Filenames="$Filenames $Names"
1514	Names=$(ls -1 *.c 2>&1)
1515	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && Filenames="$Filenames $Names"
1516
1517
1518	# DATEIEN MIT WRITE-PERMIT NACH SOURCES_FOR_RUN_... KOPIEREN
1519	for dateiname in $Filenames
1520	do
1521	if [[ -w $dateiname ]]
1522	then
1523	if [[ "$exclude" = "" \|\| $(echo $exclude \| grep -c $dateiname) = 0 ]]
1524	then
1525	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1526	source_list=$source_list"$dateiname "
1527	fi
1528	fi
1529	done
1530
1531	cd - > /dev/null
1532
1533
1534	elif [[ "$source_list" = LOCALLY_MODIFIED ]]
1535	then
1536
1537	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1538	source_list=""
1539	cd $source_path
1540
1541
1542	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1543	if [[ ! -d .svn ]]
1544	then
1545	printf "\n\n +++ source directory"
1546	printf "\n \"$source_path\" "
1547	printf "\n is not under control of \"subversion\"."
1548	printf "\n Please do not use mrun-option \"-s LOCALLY MODIFIED\"\n"
1549	fi
1550
1551
1552	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1553	Filenames=""
1554	svn status > tmp_mrun
1555	while read line
1556	do
1557	firstc=`echo $line \| cut -c1`
1558	if [[ $firstc = M \|\| $firstc = "?" ]]
1559	then
1560	Name=`echo "$line" \| cut -c8-`
1561	extension=`echo $Name \| cut -d. -f2`
1562	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1563	then
1564	Filenames="$Filenames "$Name
1565	fi
1566	fi
1567	done < tmp_mrun
1568
1569
1570	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1571	for dateiname in $Filenames
1572	do
1573	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1574	source_list=$source_list"$dateiname "
1575	done
1576
1577	cd - > /dev/null
1578
1579
1580	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1581	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1582	# VORHANDEN
1583	elif [[ "$source_list" != "" && $restart_run != true ]]
1584	then
1585
1586	cd $source_path
1587
1588	for filename in $source_list
1589	do
1590
1591	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1592	if [[ $(print $filename \| grep -c "/") != 0 ]]
1593	then
1594	printf "\n +++ source code file: $filename"
1595	printf "\n must not contain (\"/\") "
1596	locat=source; exit
1597	fi
1598
1599	if [[ ! -f $filename ]]
1600	then
1601	printf "\n +++ source code file: $filename"
1602	printf "\n does not exist"
1603	locat=source; exit
1604	else
1605	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1606	fi
1607
1608	done
1609
1610	cd - > /dev/null
1611
1612	fi
1613
1614
1615	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1616	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1617	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1618	if [[ $restart_run != true ]]
1619	then
1620
1621	if [[ ! -f "$source_path/$mainprog" ]]
1622	then
1623	printf "\n\n +++ main program: $mainprog"
1624	printf "\n does not exist in source directory"
1625	printf "\n \"$source_path\"\n"
1626	locat=source; exit
1627	else
1628	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1629	then
1630	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1631	source_list=${mainprog}" $source_list"
1632	fi
1633	fi
1634	fi
1635
1636
1637	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1638	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1639	if [[ "$restart_run" != true ]]
1640	then
1641	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1642	if [[ ! -f $makefile ]]
1643	then
1644	printf "\n +++ file \"$makefile\" does not exist"
1645	locat=make; exit
1646	else
1647	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1648	fi
1649	fi
1650
1651
1652	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1653	if [[ $restart_run != true && "$add_source_path" != "" ]]
1654	then
1655
1656	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1657	if [[ ! -d $add_source_path ]]
1658	then
1659	printf "\n\n +++ WARNING: additional source code directory"
1660	printf "\n \"$add_source_path\" "
1661	printf "\n does not exist or is not a directory."
1662	printf "\n No source code will be used from this directory!\n"
1663	add_source_path=""
1664	sleep 3
1665	else
1666
1667	cd $add_source_path
1668	found=false
1669
1670	Names=$(ls -1 *.f90 2>&1)
1671	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1672	Names=$(ls -1 *.F90 2>&1)
1673	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1674	Names=$(ls -1 *.F 2>&1)
1675	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1676	Names=$(ls -1 *.f 2>&1)
1677	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1678	Names=$(ls -1 *.c 2>&1)
1679	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1680
1681	cd - > /dev/null
1682	cd SOURCES_FOR_RUN_$fname
1683
1684	# COPY MAKEFILE IF EXISTING
1685	if [[ -f $add_source_path/Makefile ]]
1686	then
1687	printf "\n\n *** user Makefile from directory"
1688	printf "\n \"$add_source_path\" is used \n"
1689	sleep 1
1690	cp $add_source_path/Makefile .
1691	fi
1692
1693	for dateiname in $AddFilenames
1694	do
1695	if [[ -f $dateiname ]]
1696	then
1697	printf "\n +++ source code file \"$dateiname\" found in additional"
1698	printf "\n source code directory \"$add_source_path\" "
1699	printf "\n but was also given with option \"-s\" which means that it should be taken"
1700	printf "\n from directory \"$source_path\"."
1701	locat=source; exit
1702	fi
1703
1704	cp $add_source_path/$dateiname .
1705	source_list="$source_list $dateiname"
1706
1707	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1708	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1709	then
1710	printf "\n\n +++ user file \"$dateiname\" "
1711	printf "\n is not listed in Makefile \n"
1712	locat=source; exit
1713	else
1714
1715	# Default User-Interface von der Liste entfernen, falls Datei
1716	# ein User-Interface enthaelt
1717	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1718	# then
1719	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1720	# then
1721	# rm -rf user_interface.f90
1722	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1723	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1724	# printf "\n since a user-interface is found in file"
1725	# printf "\n \"$add_source_path/$dateiname\" \n"
1726	# sleep 3
1727	# else
1728	if [[ $found = false ]]
1729	then
1730	found=true
1731	printf "\n\n *** following user file(s) added to the"
1732	printf " files to be translated:\n "
1733	fi
1734	printf "$dateiname "
1735	sleep 0.5
1736	fi
1737	done
1738	[[ $found = true ]] && printf "\n"
1739	cd - > /dev/null
1740	fi
1741	fi
1742
1743
1744	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1745	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1746	if [[ $restart_run != true && -n $package_list ]]
1747	then
1748
1749	cd $source_path
1750
1751	for package in $package_list
1752	do
1753
1754	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1755
1756	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1757	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1758	# LIEFERT
1759	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1760
1761
1762	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1763	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1764	for source_list_name in $package_source_list
1765	do
1766	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1767	then
1768
1769	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1770	ending=`echo $source_list_name \| cut -f2 -d.`
1771	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1772	then
1773	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1774	source_list="$source_list $source_list_name"
1775	fi
1776	fi
1777	done
1778	done
1779
1780	cd - > /dev/null
1781	fi
1782
1783
1784	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1785	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1786	# if [[ "$restart_run" != true ]]
1787	# then
1788	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1789	# if [[ ! -f $makefile ]]
1790	# then
1791	# printf "\n +++ file \"$makefile\" does not exist"
1792	# locat=make; exit
1793	# else
1794	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1795	# fi
1796	# fi
1797
1798	fi # do_compile=true
1799
1800
1801	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1802	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1803	if [[ $do_compile = true ]]
1804	then
1805
1806	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1807	# ZUSAMMENSETZEN
1808	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1809	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1810	then
1811	cpp_options="${cpp_options},-D__ibm=__ibm"
1812	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1813	then
1814	cpp_options="$cpp_options -D__nec"
1815	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1816	then
1817	cpp_options="$cpp_options -D__lc"
1818	else
1819	cpp_options="$cpp_options -D__$localhost"
1820	fi
1821
1822	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1823	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1824	then
1825	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1826	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1827	else
1828	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1829	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1830	fi
1831
1832	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1833	if [[ -n $package_list ]]
1834	then
1835	for package in $package_list
1836	do
1837	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1838	then
1839	if [[ $package != "dvrp_graphics+1PE" ]]
1840	then
1841	cpp_options="${cpp_options},-D__$package=__$package"
1842	else
1843	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1844	export use_seperate_pe_for_dvrp_output=true
1845	fi
1846	else
1847	if [[ $package != "dvrp_graphics+1PE" ]]
1848	then
1849	cpp_options="$cpp_options -D__$package"
1850	else
1851	cpp_options="$cpp_options -D__dvrp_graphics"
1852	export use_seperate_pe_for_dvrp_output=true
1853	fi
1854	fi
1855	done
1856	fi
1857
1858	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1859	if [[ -n $cpp_opts ]]
1860	then
1861	for popts in $cpp_opts
1862	do
1863	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1864	then
1865	cpp_options="${cpp_options},-D__$popts=__$popts"
1866	else
1867	cpp_options="$cpp_options -D__$popts"
1868	fi
1869	done
1870	fi
1871
1872	else
1873
1874
1875	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1876	if [[ $do_remote = false ]]
1877	then
1878	if [[ ! -f $executable ]]
1879	then
1880	printf "\n +++ executable file: $executable"
1881	printf "\n does not exist"
1882	locat=executable; exit
1883	fi
1884	fi
1885	fi
1886
1887
1888	# JOBMODUS FESTSTELLEN
1889	if [[ "$ENVIRONMENT" = BATCH && $localhost != lctit \|\| "$QUEUE" != interactive && $localhost = lctit ]]
1890	then
1891	jobmo=BATCH
1892	else
1893	jobmo=INTERACTIVE
1894	fi
1895
1896
1897	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1898	# DURCH BENUTZER ANDERWEITIG VEREINBART
1899	if [[ "$compiler_name" = "" ]]
1900	then
1901
1902	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
1903	locat=compiler_name; exit
1904
1905	fi
1906
1907
1908	# COMPILER AUF NECK UEBERSCHREIBEN
1909	[[ $localhost = neck ]] && compiler_name=mpif90
1910
1911
1912
1913	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
1914	kennung=$RANDOM
1915	if [[ "$tmp_user_catalog" = "" ]]
1916	then
1917	if [[ $localhost = ibmb \|\| $localhost = ibmh ]]
1918	then
1919	tmp_user_catalog=$TMPDIR
1920	elif [[ $localhost = nech ]]
1921	then
1922	tmp_user_catalog=$WRKSHR
1923	else
1924	tmp_user_catalog=/tmp
1925	fi
1926	fi
1927	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
1928
1929
1930	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
1931	# BESTIMMEN
1932	if [[ "$tmp_data_catalog" = "" ]]
1933	then
1934	if [[ $localhost = ibmb \|\| $localhost = ibmh ]]
1935	then
1936	tmp_data_catalog=$WORK/mrun_restart_data
1937	elif [[ $localhost = nech ]]
1938	then
1939	tmp_data_catalog=$WRKSHR/mrun_restart_data
1940	else
1941	tmp_data_catalog=/tmp/mrun_restart_data
1942	fi
1943	fi
1944
1945
1946	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
1947	# ERSETZEN
1948	if [[ $do_remote = false && $do_compile = true ]]
1949	then
1950	eval fopts=\"$fopts\"
1951	eval lopts=\"$lopts\"
1952	fi
1953
1954
1955
1956	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
1957	fopts="$fopts $netcdf_inc $dvrp_inc"
1958	lopts="$lopts $netcdf_lib $dvrp_lib"
1959	ROPTS="$ropts"
1960	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxt4 ) && -n $numprocs ]]
1961	then
1962	XOPT="-X $numprocs"
1963	fi
1964
1965
1966
1967	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
1968	# GRAMM BENOETIGT
1969	done=false
1970	while [[ $done = false ]]
1971	do
1972	cputime=$cpumax
1973	if (( $cputime == 0 ))
1974	then
1975	printf "\n +++ cpu-time is undefined"
1976	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
1977	printf "\n >>> "
1978	read cputime 1>/dev/null 2>&1
1979	else
1980	done=true
1981	fi
1982	cpumax=$cputime
1983	done
1984
1985	(( minuten = cputime / 60 ))
1986	(( sekunden = cputime - minuten * 60 ))
1987
1988
1989	# PRUEFEN DER KERNSPEICHERANFORDERUNG
1990	if [[ $do_batch = true ]]
1991	then
1992	done=false
1993	while [[ $done = false ]]
1994	do
1995	if (( memory == 0 ))
1996	then
1997	printf "\n +++ memory demand is undefined"
1998	printf "\n >>> Please type memory in MByte per process as INTEGER:"
1999	printf "\n >>> "
2000	read memory 1>/dev/null 2>&1
2001	else
2002	done=true
2003	fi
2004	done
2005	fi
2006
2007
2008	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
2009	if [[ $do_remote = true && -z $remote_username ]]
2010	then
2011	while [[ -z $remote_username ]]
2012	do
2013	printf "\n +++ username on remote host \"$host\" is undefined"
2014	printf "\n >>> Please type username:"
2015	printf "\n >>> "
2016	read remote_username
2017	done
2018	mc="$mc -u$remote_username"
2019	fi
2020
2021
2022	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
2023	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2024	then
2025	[[ "$mpilib" = "" ]] && export mpilib=mpt
2026	fi
2027
2028
2029
2030	###########################################################################
2031	# HEADER-AUSGABE
2032	###########################################################################
2033
2034
2035	calltime=$(date)
2036	printf "\n"
2037	# [[ $silent = false ]] && clear
2038	printf "#--------------------------------------------------------------# \n"
2039	printf "\| $version$calltime \| \n"
2040	printf "\| \| \n"
2041	spalte1="called on:"; spalte2=$localhost_realname
2042	printf "\| $spalte1$spalte2 \| \n"
2043	if [[ $local_compile = false ]]
2044	then
2045	if [[ $do_remote = true ]]
2046	then
2047	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2048	else
2049	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2050	fi
2051	else
2052	spalte1="compiling test only!"; spalte2=""
2053	fi
2054	printf "\| $spalte1$spalte2 \| \n"
2055	if [[ -n $numprocs ]]
2056	then
2057	spalte1="number of PEs:"; spalte2=$numprocs
2058	printf "\| $spalte1$spalte2 \| \n"
2059	fi
2060	if [[ -n $tasks_per_node ]]
2061	then
2062	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2063	printf "\| $spalte1$spalte2 \| \n"
2064	fi
2065	if [[ $threads_per_task != 1 ]]
2066	then
2067	spalte1="threads per task:"; spalte2="$threads_per_task"
2068	printf "\| $spalte1$spalte2 \| \n"
2069	fi
2070	printf "\| \| \n"
2071	if [[ $do_compile = true ]]
2072	then
2073	spalte1=cpp-directives:; spalte2=$cpp_options
2074	printf "\| $spalte1$spalte2 \| \n"
2075	zeile=$(echo "$cpp_options" \| cut -c41-)
2076	while [[ "$zeile" != "" ]]
2077	do
2078	spalte1=""
2079	spalte2=$zeile
2080	printf "\| $spalte1$spalte2 \| \n"
2081	zeile=$(echo "$zeile" \| cut -c41-)
2082	done
2083
2084	spalte1=compiler-options:; spalte2="$fopts"
2085	printf "\| $spalte1$spalte2 \| \n"
2086	zeile=$(echo "$fopts" \| cut -c41-)
2087	while [[ "$zeile" != "" ]]
2088	do
2089	spalte1=""
2090	spalte2=$zeile
2091	printf "\| $spalte1$spalte2 \| \n"
2092	zeile=$(echo "$zeile" \| cut -c41-)
2093	done
2094
2095	spalte1=linker-options:; spalte2=$lopts
2096	printf "\| $spalte1$spalte2 \| \n"
2097	zeile=$(echo "$lopts" \| cut -c41-)
2098	while [[ "$zeile" != "" ]]
2099	do
2100	spalte1=""
2101	spalte2=$zeile
2102	printf "\| $spalte1$spalte2 \| \n"
2103	zeile=$(echo "$zeile" \| cut -c41-)
2104	done
2105
2106	spalte1="main program":; spalte2=$mainprog
2107	printf "\| $spalte1$spalte2 \| \n"
2108	else
2109	spalte1=executable:; spalte2=$executable
2110	printf "\| $spalte1$spalte2 \| \n"
2111	fi
2112	printf "\| \| \n"
2113	spalte1="base name of files":; spalte2=$fname
2114	printf "\| $spalte1$spalte2 \| \n"
2115	if [[ $fname != $afname ]]
2116	then
2117	spalte1="base name of input files":; spalte2=$afname
2118	printf "\| $spalte1$spalte2 \| \n"
2119	fi
2120	spalte1="INPUT control list":; spalte2=$input_list
2121	printf "\| $spalte1$spalte2 \| \n"
2122	spalte1="OUTPUT control list":; spalte2=$output_list
2123	printf "\| $spalte1$spalte2 \| \n"
2124
2125	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2126	then
2127	spalte1="memory demand / PE":; spalte2="$memory MB"
2128	printf "\| $spalte1$spalte2 \| \n"
2129	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2130	printf "\| $spalte1$spalte2 \| \n"
2131	fi
2132
2133	if [[ $do_compile = true ]]
2134	then
2135	printf "\| \| \n"
2136	printf "\| Files to be compiled: \| \n"
2137	zeile=$source_list
2138	while [[ "$zeile" != "" ]]
2139	do
2140	spalte3=$zeile
2141	printf "\| $spalte3 \| \n"
2142	zeile=$(echo "$zeile" \| cut -c61-)
2143	done
2144	fi
2145	printf "#--------------------------------------------------------------#"
2146
2147
2148
2149	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2150	if [[ $do_trace = true ]]
2151	then
2152	(( i = 0 ))
2153	while (( i < iin ))
2154	do
2155	(( i = i + 1 ))
2156	if (( i == 1 ))
2157	then
2158	printf "\n\n >>> INPUT-file assignments:\n"
2159	fi
2160	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2161	done
2162	(( i = 0 ))
2163	while (( i < iout ))
2164	do
2165	(( i = i + 1 ))
2166	if (( i == 1 ))
2167	then
2168	printf "\n\n >>> OUTPUT-file assignments:\n"
2169	fi
2170	printf "\n ${localout[$i]} : ${pathout[$i]}"
2171	done
2172	(( i = 0 ))
2173	while (( i < iic ))
2174	do
2175	(( i = i + 1 ))
2176	if (( i == 1 ))
2177	then
2178	printf "\n\n >>> INPUT-commands:\n"
2179	fi
2180	printf "\n ${in_command[$i]}"
2181	done
2182	(( i = 0 ))
2183	while (( i < ioc ))
2184	do
2185	(( i = i + 1 ))
2186	if (( i == 1 ))
2187	then
2188	printf "\n\n >>> OUTPUT-commands:\n"
2189	fi
2190	printf "\n ${out_command[$i]}"
2191	done
2192	fi
2193
2194
2195	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2196	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2197	then
2198	antwort=dummy
2199	printf "\n\n"
2200	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2201	do
2202	printf " >>> everything o.k. (y/n) ? "
2203	read antwort
2204	done
2205	if [[ $antwort = n \|\| $antwort = N ]]
2206	then
2207	locat=user_abort; (( iec = 0 )); exit
2208	fi
2209	if [[ $do_batch = true ]]
2210	then
2211	printf " >>> batch-job will be created and submitted"
2212	else
2213	if [[ $local_compile = false ]]
2214	then
2215	printf " >>> MRUN will now continue to execute on this machine"
2216	else
2217	printf " >>> a test compilation will now be carried out on this machine"
2218	fi
2219	fi
2220	fi
2221
2222
2223
2224
2225	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2226	# CHENDE AKTIONEN DURCHGEFUEHRT
2227	if [[ $do_batch = false ]]
2228	then
2229
2230
2231	# TEMPORAEREN KATALOG ERZEUGEN
2232	mkdir -p $TEMPDIR
2233	chmod go+rx $TEMPDIR
2234	tmpcreate=true
2235
2236
2237	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2238	# TEMPORAERES VERZEICHNIS KOPIEREN
2239	if [[ $do_compile = true ]]
2240	then
2241
2242	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2243	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2244	if [[ $localhost = nech ]]
2245	then
2246	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2247	if mkdir -p $TEMPDIR_COMPILE
2248	then
2249	printf "\n *** \"$TEMPDIR_COMPILE\" "
2250	printf "\n is generated as temporary directory for cross compiling\n"
2251	else
2252	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2253	printf "\n needed for cross compilation failed"
2254	locat=compile
2255	exit
2256	fi
2257	else
2258	TEMPDIR_COMPILE=$TEMPDIR
2259	fi
2260
2261
2262	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2263	line=""
2264	grep "%depository_path" $config_file > tmp_mrun
2265	while read line
2266	do
2267	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2268	then
2269	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2270	then
2271	global_depository_path=`echo $line \| cut -d" " -s -f2`
2272	fi
2273	fi
2274	done < tmp_mrun
2275
2276	line=""
2277	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2278	while read line
2279	do
2280	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2281	then
2282	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2283	then
2284	local_depository_path=`echo $line \| cut -d" " -s -f2`
2285	fi
2286	fi
2287	done < tmp_mrun
2288
2289	if [[ "$local_depository_path" = "" ]]
2290	then
2291	if [[ "$global_depository_path" != "" ]]
2292	then
2293	local_depository_path=$global_depository_path
2294	else
2295	printf "\n\n +++ no depository path found in configuration file"
2296	printf "\n for local host \"$localhost\" "
2297	printf "\n please set \"\%depository_path\" in configuration file\n"
2298	locat=config_file; exit
2299	fi
2300	fi
2301	eval local_depository_path=$local_depository_path
2302	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2303	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2304
2305
2306	basename=`print $mainprog \| cut -f1 -d"."`
2307	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2308	if [[ ! -f $make_depository ]]
2309	then
2310	printf "\n"
2311	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2312	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2313	else
2314	cp $make_depository $TEMPDIR_COMPILE
2315	cd $TEMPDIR_COMPILE
2316	tar -xf $make_depository > /dev/null 2>&1
2317	cd - > /dev/null
2318	fi
2319
2320	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2321
2322	# FALLS USER-INTERFACE VORHANDEN UND AUF DATEI MIT ANDEREM NAMEN
2323	# ALS user_interface.f90 LIEGT, DIESEN GEAENDERTEN NAMEN INS
2324	# MAKEFILE EINTRAGEN
2325	# cd $TEMPDIR_COMPILE
2326	# interface_file=`grep -l "END SUBROUTINE user_parin" $source_list`
2327	# if [[ "$interface_file" != "" ]]
2328	# then
2329	# interface_file=`echo $interface_file \| cut -d"." -f1`
2330	# mv Makefile Makefile_old
2331	# sed "s/user_interface/$interface_file/g" Makefile_old > Makefile
2332	# fi
2333	# cd - > /dev/null
2334	else
2335	cp $executable ${TEMPDIR}/a.out
2336	fi
2337
2338
2339	# WECHSEL IN TEMPORAEREN KATALOG
2340	cd $TEMPDIR
2341	printf "\n *** changed to temporary directory: $TEMPDIR"
2342
2343
2344	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2345	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2346	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2347	# ERMITTELN
2348	(( i = 0 ))
2349	while (( i < iout ))
2350	do
2351	(( i = i + 1 ))
2352	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2353	then
2354	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2355	else
2356	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2357	fi
2358	done
2359
2360
2361	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2362	if [[ $do_compile = true ]]
2363	then
2364
2365
2366	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2367	printf "\n\n\n *** compilation starts \n$striche\n"
2368	printf " *** compilation with make using following options:\n"
2369	printf " make depository: $make_depository"
2370	printf " compilername: $compiler_name\n"
2371	printf " options: $fopts\n"
2372	printf " preprocessor-directives: $cpp_options \n"
2373	printf " linker-options: $lopts \n"
2374	printf " source code files: $source_list \n"
2375
2376	if [[ $localhost = nech ]]
2377	then
2378	ssh 136.172.44.192 -l $usern ". /SX/opt/etc/initsx.sh; cd \$HOME/work/${usern}.$kennung; sxmake -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2379	cp $TEMPDIR_COMPILE/a.out .
2380	[[ $? != 0 ]] && compile_error=true
2381	rm -rf $TEMPDIR_COMPILE
2382	elif [[ $localhost = lcsgib ]]
2383	then
2384	printf " compiler is called via ssh on \"bicegate\" using module \"$mpilib\" \n"
2385	ssh 130.73.232.102 -l $usern ". /usr/share/modules/init/bash; module load $mpilib; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2386	[[ ! -f a.out ]] && compile_error=true
2387	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2388	elif [[ $localhost = lcsgih ]]
2389	then
2390	printf " compiler is called via ssh on \"hicegate2\" using module \"$mpilib\" \n"
2391	ssh 130.75.4.103 -l $usern ". /usr/share/modules/init/bash; module load $mpilib; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2392	[[ ! -f a.out ]] && compile_error=true
2393	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2394	else
2395	[[ $localhost = lctit ]] && export LM_LICENSE_FILE=27050@tggls
2396	make -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2397	fi
2398
2399	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2400	then
2401	printf "\n +++ error occured while compiling or linking"
2402	locat=compile
2403
2404	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
2405	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
2406	# then
2407	exit
2408	# else
2409	# locat=normal
2410	# fi
2411	else
2412	printf "$striche\n *** compilation finished \n"
2413	fi
2414	fi
2415
2416
2417	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2418	if [[ $local_compile = true ]]
2419	then
2420	cd $HOME
2421	rm -rf $TEMPDIR
2422	locat=local_compile; exit
2423	fi
2424
2425
2426	# BEREITSTELLEN DER INPUT-DATEIEN
2427	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2428	(( i = 0 ))
2429	while (( i < iin ))
2430	do
2431	(( i = i + 1 ))
2432	if (( i == 1 ))
2433	then
2434	printf "\n\n *** providing INPUT-files:\n$striche"
2435	fi
2436
2437
2438	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2439	if [[ "${transin[$i]}" = unavailable ]]
2440	then
2441	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2442	then
2443	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2444	printf "\n is not available!"
2445	else
2446	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2447	printf "\n is not available!"
2448	fi
2449	continue
2450	fi
2451
2452	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2453	files_for_pes=false; datentyp=file
2454	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2455	then
2456	files_for_pes=true; datentyp=directory
2457	actionin[$i]=""
2458	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2459	then
2460	actionin[$i]=""
2461	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2462	then
2463	files_for_pes=true; datentyp=directory
2464	actionin[$i]="ar"
2465	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2466	then
2467	actionin[$i]="ar"
2468	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2469	then
2470	files_for_pes=true; datentyp=directory
2471	actionin[$i]="fl"
2472	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2473	then
2474	actionin[$i]="fl"
2475	fi
2476
2477	if [[ $files_for_pes = true ]]
2478	then
2479	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
2480	else
2481	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
2482	fi
2483
2484	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
2485	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
2486	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
2487	# SERVER ZU HOLEN
2488	if [[ "${actionin[$i]}" = fl ]]
2489	then
2490	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
2491	if [[ $files_for_pes = false ]]
2492	then
2493	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
2494	then
2495	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
2496	got_tmp[$i]=true
2497	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2498	then
2499	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2500	printf "\n *** trying to use backup copy in \"$WORK\" "
2501	cp $WORK/${frelin[$i]} ${localin[$i]}
2502	else
2503	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2504	printf "\n or \"$tmp_data_catalog\" does not exist!"
2505	printf "\n *** trying to get copy from archive"
2506	actionin[$i]=ar
2507	fi
2508	else
2509	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
2510	then
2511	mkdir ${localin[$i]}
2512	cd $tmp_data_catalog/${frelin[$i]}
2513	for file in $(ls *)
2514	do
2515	ln $file $TEMPDIR/${localin[$i]}
2516	done
2517	cd $TEMPDIR
2518	got_tmp[$i]=true
2519	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2520	then
2521	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2522	printf "\n *** trying to use backup copy in \"$WORK\" "
2523	cp -r $WORK/${frelin[$i]} ${localin[$i]}
2524	else
2525	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2526	printf "\n or \"$tmp_data_catalog\" does not exist!"
2527	printf "\n *** trying to get copy from archive"
2528	actionin[$i]=ar
2529	fi
2530	fi
2531	fi
2532
2533
2534	# DATEI LIEGT AUF ARCHIV-SERVER
2535	if [[ "${actionin[$i]}" = ar ]]
2536	then
2537
2538	if [[ $files_for_pes = false ]]
2539	then
2540	printf "\n file will be restored from archive-system ($archive_system)!"
2541	else
2542	printf "\n directory will be restored from archive-system ($archive_system)!"
2543	fi
2544
2545	file_restored=false
2546
2547	if [[ $archive_system = asterix ]]
2548	then
2549	do_stagein=true
2550	(( stagein_anz = 0 ))
2551	while [[ $do_stagein = true ]]
2552	do
2553	if [[ $files_for_pes = false ]]
2554	then
2555	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
2556	else
2557	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
2558	fi
2559	cat STAGEIN_OUTPUT
2560	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
2561	then
2562	file_restored=true
2563	do_stagein=false
2564	else
2565	(( stagein_anz = stagein_anz + 1 ))
2566	if (( stagein_anz == 10 ))
2567	then
2568	printf "\n +++ stagein stoped after 10 tries"
2569	locat=stage
2570	exit
2571	fi
2572	printf "\n +++ restoring from archive failed, trying again:"
2573	sleep 900
2574	fi
2575	done
2576	elif [[ $archive_system = DMF ]]
2577	then
2578	if [[ $files_for_pes = false ]]
2579	then
2580	printf "\n +++ restoring of single files impossible with $archive_system !\n"
2581	locat=DMF
2582	exit
2583	else
2584	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
2585	cp -r $ARCHIVE/${frelin[$i]} $PWD
2586	file_restored=true
2587	fi
2588	elif [[ $archive_system = tivoli ]]
2589	then
2590	if [[ $files_for_pes = false ]]
2591	then
2592	if [[ $localhost = ibmh ]]
2593	then
2594	ssh $usern@hdata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2595	else
2596	ssh $usern@bdata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2597	fi
2598	else
2599	(( inode = 0 ))
2600	while (( inode < nodes ))
2601	do
2602	if [[ $localhost = ibmh ]]
2603	then
2604	ssh $usern@hdata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2605	else
2606	ssh $usern@bdata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2607	fi
2608	(( inode = inode + 1 ))
2609	done
2610	fi
2611	file_restored=true
2612	elif [[ $archive_system = ut ]]
2613	then
2614	if [[ $files_for_pes = false ]]
2615	then
2616	cp $UT/${frelin[$i]} .
2617	else
2618	(( inode = 0 ))
2619	while (( inode < nodes ))
2620	do
2621	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
2622	(( inode = inode + 1 ))
2623	done
2624	fi
2625	file_restored=true
2626	else
2627	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
2628	locat=rearchive
2629	exit
2630	fi
2631
2632	if [[ $file_restored = true ]]
2633	then
2634
2635	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
2636	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
2637	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
2638	if [[ $files_for_pes = false ]]
2639	then
2640	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
2641	else
2642	mkdir $tmp_data_catalog/${frelin[$i]}
2643	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
2644	fi
2645	got_tmp[$i]=true
2646
2647	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
2648	mv ${frelin[$i]} ${localin[$i]}
2649
2650	fi
2651	fi
2652
2653
2654	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
2655	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
2656	then
2657
2658	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
2659	then
2660
2661	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
2662	printf "\n file will be provided for $numprocs processors"
2663	mkdir ${localin[$i]}
2664	ival=$numprocs
2665	(( ii = 0 ))
2666	while (( ii <= ival-1 ))
2667	do
2668	if (( ii < 10 ))
2669	then
2670	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
2671	elif (( ii < 100 ))
2672	then
2673	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
2674	elif (( ii < 1000 ))
2675	then
2676	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
2677	else
2678	cp ${absnamein[$i]} ${localin[$i]}/_$ii
2679	fi
2680	(( ii = ii + 1 ))
2681	done
2682
2683	else
2684
2685	if [[ $files_for_pes = true ]]
2686	then
2687
2688	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
2689	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
2690	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
2691	# PER MOVE UMBENANNT WERDEN
2692	printf "\n providing $numprocs files for the respective processors"
2693	mkdir ${localin[$i]}
2694	if [[ $link_local_input = true ]]
2695	then
2696	printf " using ln -f\n"
2697	cd ${absnamein[$i]}
2698	for file in $(ls *)
2699	do
2700	ln -f $file ${localin[$i]}
2701	done
2702	cd $TEMPDIR
2703	fi
2704	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
2705	if [[ ! -f "${localin[$i]}/_0000" ]]
2706	then
2707	if [[ $link_local_input = true ]]
2708	then
2709	printf " ln failed for .../_0000, using cp...\n"
2710	fi
2711	cp -r ${absnamein[$i]}/* ${localin[$i]}
2712	fi
2713
2714	else
2715	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
2716	if [[ $link_local_input = true ]]
2717	then
2718	printf " using ln -f\n"
2719	ln -f ${absnamein[$i]} ${localin[$i]}
2720	fi
2721	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
2722	if [[ ! -f "${localin[$i]}" ]]
2723	then
2724	if [[ $link_local_input = true ]]
2725	then
2726	printf " ln failed, using cp...\n"
2727	fi
2728	cp ${absnamein[$i]} ${localin[$i]}
2729	fi
2730	fi
2731	fi
2732	fi
2733
2734	done
2735	if (( i != 0 ))
2736	then
2737	printf "\n$striche\n *** all INPUT-files provided \n"
2738	fi
2739
2740
2741	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
2742	# LESEN VON PALM)
2743	cat > ENVPAR << %%END%%
2744	&envpar run_identifier = '$fname', host = '$localhost',
2745	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2746	maximum_cpu_time_allowed = ${cpumax}.,
2747	revision = '$global_revision' /
2748
2749	%%END%%
2750
2751
2752	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
2753	(( i = 0 ))
2754	while (( i < iic ))
2755	do
2756	(( i = i + 1 ))
2757	if (( i == 1 ))
2758	then
2759	printf "\n\n *** execution of INPUT-commands:\n$striche"
2760	fi
2761	printf "\n >>> ${in_command[$i]}"
2762	eval ${in_command[$i]}
2763	if (( i == iic ))
2764	then
2765	printf "\n$striche\n"
2766	fi
2767	done
2768
2769
2770	# VERBLEIBENDE CPU-ZEIT BERECHNEN
2771	cpurest=${cpumax}.
2772
2773
2774	# PROGRAMMSTART
2775	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
2776	PATH=$PATH:$TEMPDIR
2777
2778	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
2779	then
2780	if [[ "$ENVIRONMENT" = BATCH ]]
2781	then
2782	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
2783	then
2784	printf "\n +++ debug is allowed in interactive mode only"
2785	locat=debug
2786	exit
2787	fi
2788	fi
2789	if [[ $localhost = decalpha ]]
2790	then
2791	dxladebug a.out
2792	elif [[ $localhost = ibmb \|\| $localhost = ibmh ]]
2793	then
2794
2795	# SETUP THE IBM MPI ENVIRONMENT
2796	export MP_SHARED_MEMORY=yes
2797	export AIXTHREADS_SCOPE=S
2798	export OMP_NUM_THREADS=$threads_per_task
2799	export AUTHSTATE=files
2800	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
2801
2802	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
2803	export MP_ADAPTER_USE=shared
2804	export MP_CPU_USE=multiple
2805	export MP_TIMEOUT=1200
2806
2807	unset MP_TASK_AFFINITY
2808
2809	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
2810	#(( ii = 1 ))
2811	#while (( ii <= $numprocs ))
2812	#do
2813	# echo $localhost_realname >> hostfile
2814	# (( ii = ii + 1 ))
2815	#done
2816	#export MP_HOSTFILE=hostfile
2817
2818	if [[ "$LOADLBATCH" = yes ]]
2819	then
2820	totalview poe a.out $ROPTS
2821	else
2822	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
2823	export TVDSVRLAUNCHCMD=ssh
2824	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
2825	fi
2826	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
2827	then
2828	# CURRENTLY NO DEBUGGER ON LCSGI
2829	if [[ $run_coupled_model = true ]]
2830	then
2831	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
2832	locat=debug
2833	exit
2834	else
2835	echo "no_coupling" > runfile_atmos
2836	fi
2837	(( ii = $numprocs / $threads_per_task ))
2838	export OMP_NUM_THREADS=$threads_per_task
2839	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
2840	if [[ $threads_per_task != 1 ]]
2841	then
2842	printf "\n threads per task: $threads_per_task"
2843	fi
2844	printf "\n\n"
2845	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
2846	then
2847	# export MPI_LAUNCH_TIMEOUT=360
2848	if [[ "$totalview" = true ]]
2849	then
2850	printf "\n running totalview debugger"
2851	mpiexec_mpt -tv -n $ii ./a.out $ROPTS < runfile_atmos
2852	else
2853	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
2854	fi
2855	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
2856	then
2857	# ulimit -s 300000 # A too large stack size causes problems
2858	# export MV2_NUM_PORTS=2
2859	# export MV2_CPU_MAPPING=0:1:2:3
2860	mpiexec ./a.out $ROPTS < runfile_atmos
2861	fi
2862	else
2863	printf "\n +++ no debug available on \"$localhost\" "
2864	printf "\n or not implemented in mrun so far"
2865	locat=debug
2866	exit
2867	fi
2868	else
2869	if [[ -n $numprocs ]]
2870	then
2871
2872	# RUNNING THE PROGRAM ON PARALLEL MACHINES
2873	if [[ $(echo $host \| cut -c1-3) = ibm ]]
2874	then
2875	# SETUP THE IBM MPI ENVIRONMENT
2876	export MP_SHARED_MEMORY=yes
2877	export AIXTHREAD_SCOPE=S
2878	export OMP_NUM_THREADS=$threads_per_task
2879	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
2880	export AUTHSTATE=files
2881	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
2882	# export MP_PRINTENV=yes
2883
2884	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
2885	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
2886	export MP_WAIT_MODE=poll
2887	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
2888	# export MP_EAGER_LIMIT=65535
2889
2890	# # TESTWEISE FUER TURBOMPI (JAN 05)
2891	# export MPJ_MTAB=128
2892	# export MPJ_ALLTOALL=1
2893	# export MPJ_ALLTOALLV=1
2894
2895	if [[ "$LOADLBATCH" = yes ]]
2896	then
2897	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
2898	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
2899	then
2900	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
2901	else
2902	poe ./a.out $ROPTS
2903	fi
2904	else
2905	if [[ $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms ]]
2906	then
2907	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
2908	elif [[ $localhost = ibmy ]]
2909	then
2910	if [[ -f $hostfile ]]
2911	then
2912	cp $hostfile hostfile
2913	else
2914	(( ii = 1 ))
2915	while (( ii <= $numprocs ))
2916	do
2917	echo $localhost_realname >> hostfile
2918	(( ii = ii + 1 ))
2919	done
2920	fi
2921	export MP_HOSTFILE=hostfile
2922	./a.out -procs $tasks_per_node $ROPTS
2923	else
2924	if [[ "$host_file" = "" ]]
2925	then
2926	printf "\n +++ no hostfile given in configuration file"
2927	locat=config_file
2928	exit
2929	else
2930	eval host_file=$host_file
2931	fi
2932	export MP_HOSTFILE=$host_file
2933	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
2934	fi
2935	fi
2936	elif [[ $host = nech \|\| $host = neck ]]
2937	then
2938	(( ii = nodes ))
2939	if [[ $ii = 1 ]]
2940	then
2941	export F_ERRCNT=0 # acceptable number of errors before program is stopped
2942	export MPIPROGINF=YES
2943	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
2944	echo "*** execution on single node with mpirun"
2945	mpirun -np $numprocs ./a.out $ROPTS
2946	else
2947	(( i = 0 ))
2948	while (( i < ii ))
2949	do
2950	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
2951	(( i = i + 1 ))
2952	done
2953
2954	echo "#!/bin/sh" > mpi_exec_shell
2955	echo " " >> mpi_exec_shell
2956	echo "set -u" >> mpi_exec_shell
2957	echo "F_ERRCNT=0" >> mpi_exec_shell
2958	echo "MPIPROGINV=YES" >> mpi_exec_shell
2959	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
2960	echo "cpurest=$cpurest" >> mpi_exec_shell
2961	echo "fname=$fname" >> mpi_exec_shell
2962	echo "localhost=$localhost" >> mpi_exec_shell
2963	echo "return_addres=$return_addres" >> mpi_exec_shell
2964	echo "return_username=$return_username" >> mpi_exec_shell
2965	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
2966	echo "write_binary=$write_binary" >> mpi_exec_shell
2967	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
2968	echo " " >> mpi_exec_shell
2969	echo "export F_ERRCNT" >> mpi_exec_shell
2970	echo "export MPIPROGINV" >> mpi_exec_shell
2971	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
2972	echo "export cpurest" >> mpi_exec_shell
2973	echo "export fname" >> mpi_exec_shell
2974	echo "export localhost" >> mpi_exec_shell
2975	echo "export return_addres" >> mpi_exec_shell
2976	echo "export return_username" >> mpi_exec_shell
2977	echo "export tasks_per_node" >> mpi_exec_shell
2978	echo "export write_binary" >> mpi_exec_shell
2979	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
2980	echo " " >> mpi_exec_shell
2981	echo "exec ./a.out" >> mpi_exec_shell
2982
2983	chmod u+x mpi_exec_shell
2984	export MPIPROGINF=YES
2985	mpirun -f multinode_config &
2986	wait
2987
2988	fi
2989	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lctit ]]
2990	then
2991
2992	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
2993	# DOES NOT EXIST
2994	if [[ $host != lcsgih && $host != lcsgib ]]
2995	then
2996	if [[ -f $hostfile ]]
2997	then
2998	cp $hostfile hostfile
2999	else
3000	(( ii = 1 ))
3001	while (( ii <= $numprocs / $threads_per_task ))
3002	do
3003	echo $localhost_realname >> hostfile
3004	(( ii = ii + 1 ))
3005	done
3006	fi
3007	eval zeile=\"`head -n $ii hostfile`\"
3008	printf "\n *** running on: $zeile"
3009	fi
3010
3011	(( ii = $numprocs / $threads_per_task ))
3012	export OMP_NUM_THREADS=$threads_per_task
3013	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3014	if [[ $threads_per_task != 1 ]]
3015	then
3016	printf "\n threads per task: $threads_per_task"
3017	fi
3018	if [[ $run_coupled_model = false ]]
3019	then
3020	echo "no_coupling" > runfile_atmos
3021	printf "\n\n"
3022	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3023	then
3024	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3025	then
3026	# export MPI_LAUNCH_TIMEOUT=360
3027	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3028	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3029	then
3030	# ulimit -s 300000 # A too large stack size causes problems
3031	# export MV2_NUM_PORTS=2
3032	# export MV2_CPU_MAPPING=0:1:2:3
3033	mpiexec ./a.out $ROPTS < runfile_atmos
3034	fi
3035	elif [[ $host = lcxt4 ]]
3036	then
3037	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3038	else
3039	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3040	fi
3041	else
3042
3043	# currently there is no full MPI-2 support on ICE and XT4
3044	(( iia = $numprocs_atmos / $threads_per_task ))
3045	(( iio = $numprocs_ocean / $threads_per_task ))
3046	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3047	printf "\n using $coupled_mode coupling"
3048	printf "\n\n"
3049
3050	if [[ $coupled_mode = "mpi2" ]]
3051	then
3052	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3053	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3054	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3055	then
3056
3057	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3058	then
3059	# export MPI_LAUNCH_TIMEOUT=360
3060	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3061	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3062	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3063	then
3064	# ulimit -s 300000 # A too large stack size causes problems
3065	# export MV2_NUM_PORTS=2
3066	# export MV2_CPU_MAPPING=0:1:2:3
3067	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3068	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3069	fi
3070
3071	elif [[ $host = lcxt4 ]]
3072	then
3073
3074	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3075	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3076
3077	else
3078	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3079	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3080	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3081	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3082	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3083	fi
3084	wait
3085
3086	else
3087
3088	echo "coupled_run $iia $iio" > runfile_atmos
3089	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3090	then
3091
3092	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3093	then
3094	# export MPI_LAUNCH_TIMEOUT=360
3095	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3096	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3097	then
3098	# ulimit -s 300000 # A too large stack size causes problems
3099	# export MV2_NUM_PORTS=2
3100	# export MV2_CPU_MAPPING=0:1:2:3
3101	mpiexec ./a.out $ROPTS < runfile_atmos
3102	fi
3103
3104	elif [[ $host = lcxt4 ]]
3105	then
3106
3107	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3108
3109	fi
3110	wait
3111	fi
3112
3113	# if [[ $scirocco = true ]]
3114	# then
3115	# mpiexec -machinefile hostfile -n $ii a.out $ROPTS
3116	# else
3117	# mpirun -machinefile hostfile -np $ii a.out $ROPTS
3118	# fi
3119	fi
3120	elif [[ $host = decalpha ]]
3121	then
3122	dmpirun -np $numprocs a.out $ROPTS
3123	elif [[ $host = lctit ]]
3124	then
3125	export runfile=runfile.$kennung
3126
3127	echo "cd $PWD" > $runfile
3128	echo "export OMP_NUM_THREADS=$OMP_NUM_THREADS" >> $runfile
3129	echo "export cpurest=$cpurest" >> $runfile
3130	echo "export fname=$fname" >> $runfile
3131	echo "export localhost=$localhost" >> $runfile
3132	echo "export return_addres=$return_addres" >> $runfile
3133	echo "export return_username=$return_username" >> $runfile
3134	echo "export tasks_per_node=$tasks_per_node" >> $runfile
3135	echo "export write_binary=$write_binary" >> $runfile
3136	echo "export use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> $runfile
3137	echo "./a.out" >> $runfile
3138	chmod u+x $runfile
3139
3140	if [[ "$QUEUE" = interactive ]]
3141	then
3142	mpirun -np $numprocs a.out $ROPTS
3143	else
3144	(( mem_tsubame = $memory / 1024.0 ))
3145	echo "Memory for Tsubame for each process in GB:", $mem_tsubame
3146	# n1ge -fore -g 1S060156 -mpi $numprocs -mem 4 -N palm -q $queue a.out $ROPTS
3147	/n1ge/TITECH_GRID/tools/bin/n1ge -fore -g $group_number -mpi ${numprocs}:$tasks_per_node -mem $mem_tsubame -N palm -rt $minuten -q $queue a.out $ROPTS
3148	fi
3149
3150	rm $runfile
3151	else
3152	mpprun -n $numprocs a.out $ROPTS
3153	fi
3154	[[ $? != 0 ]] && execution_error=true
3155
3156
3157	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3158	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3159	then
3160	apprentice
3161	fi
3162	else
3163	a.out $ROPTS
3164	fi
3165	fi
3166	if [[ $? != 0 \|\| $execution_error = true ]]
3167	then
3168
3169	# ABBRUCH BEI LAUFZEITFEHLER
3170	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3171	printf "\n +++ runtime error occured"
3172	locat=execution
3173	exit
3174	else
3175	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3176	printf "\n$striche\n *** execution finished \n"
3177	fi
3178
3179
3180
3181	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3182	(( i = 0 ))
3183	while (( i < ioc ))
3184	do
3185	(( i = i + 1 ))
3186	if (( i == 1 ))
3187	then
3188	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
3189	fi
3190	printf "\n >>> ${out_command[$i]}"
3191	eval ${out_command[$i]}
3192	if (( i == ioc ))
3193	then
3194	printf "\n$striche\n"
3195	fi
3196	done
3197
3198
3199	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
3200	if [[ $do_trace = true ]]
3201	then
3202	printf "\n\n"
3203	ls -al
3204	fi
3205
3206
3207
3208	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
3209	(( i = 0 ))
3210	while (( i < iout ))
3211	do
3212	(( i = i + 1 ))
3213	if (( i == 1 ))
3214	then
3215	printf "\n\n *** saving OUTPUT-files:\n$striche"
3216	fi
3217
3218	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3219	files_for_pes=false; filetyp=file
3220	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
3221	then
3222	files_for_pes=true; filetyp=directory
3223	actionout[$i]=""
3224	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
3225	then
3226	actionout[$i]=""
3227	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
3228	then
3229	files_for_pes=true; filetyp=directory
3230	actionout[$i]="ar"
3231	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
3232	then
3233	actionout[$i]="ar"
3234	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
3235	then
3236	files_for_pes=true; filetyp=directory
3237	actionout[$i]="fl"
3238	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
3239	then
3240	actionout[$i]="fl"
3241	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
3242	then
3243	files_for_pes=true; filetyp=directory
3244	actionout[$i]="tr"
3245	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
3246	then
3247	actionout[$i]="tr"
3248	fi
3249
3250	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
3251	then
3252	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
3253	elif [[ ! -f ${localout[$i]}/_0000 && $files_for_pes = true ]]
3254	then
3255	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
3256	else
3257
3258
3259	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3260	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3261	# REMOTE-RECHNUNGEN
3262	if [[ "${actionout[$i]}" = tr ]]
3263	then
3264	if [[ $localhost != $fromhost ]]
3265	then
3266	if [[ $files_for_pes = false ]]
3267	then
3268	cps=""
3269	cst=""
3270	else
3271	cps=-c
3272	cst="/"
3273	fi
3274	if [[ $localhost = ibmh \|\| $localhost = ibmb \|\| $localhost = nech ]]
3275	then
3276
3277	# TRANSFER IN EIGENSTAENDIGEM JOB
3278	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3279	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3280	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3281	if [[ $files_for_pes = false ]]
3282	then
3283	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3284	else
3285	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
3286	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
3287	fi
3288
3289	echo "set -x" > transfer_${localout[$i]}
3290	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3291
3292	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
3293	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
3294	printf "\n or higher cycle\n"
3295	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3296
3297	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3298
3299	if [[ $localhost = nech ]]
3300	then
3301	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3302	else
3303	if [[ "$LOGNAME" = b323013 ]]
3304	then
3305	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3306	else
3307	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3308	fi
3309	fi
3310
3311	else
3312
3313	# TRANSFER INNERHALB DIESES JOBS
3314	transfer_failed=false
3315	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
3316	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
3317	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3318	[[ $? != 0 ]] && transfer_failed=true
3319
3320	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3321	# LOKALER MASCHINE ANLEGEN
3322	if [[ $transfer_failed = true ]]
3323	then
3324	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3325	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3326
3327	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3328	# ANLEGEN.
3329	eval local_catalog=${pathout[$i]}
3330	if [[ ! -d $local_catalog ]]
3331	then
3332	printf " *** local directory does not exist. Trying to create:\n"
3333	printf " $local_catalog \n"
3334	mkdir -p $local_catalog
3335	fi
3336	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3337	transfer_problems=true
3338	fi
3339	fi
3340	else
3341
3342	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
3343	actionout[$i]=""
3344	fi
3345	fi
3346
3347
3348	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3349	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3350	# REMOTE-RECHNUNGEN
3351	if [[ "${actionout[$i]}" = tra ]]
3352	then
3353	if [[ $localhost != $fromhost ]]
3354	then
3355	if [[ $localhost = ibmh \|\| $localhost = ibmb \|\| $localhost = nech ]]
3356	then
3357
3358	# TRANSFER IN EIGENSTAENDIGEM JOB
3359	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3360	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3361	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3362	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3363
3364	echo "set -x" > transfer_${localout[$i]}
3365	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3366
3367	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
3368	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
3369	printf "\n or higher cycle\n"
3370	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3371
3372	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3373
3374	if [[ $localhost = nech ]]
3375	then
3376	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3377	else
3378	if [[ $LOGNAME = b323013 ]]
3379	then
3380	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3381	else
3382	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3383	fi
3384	fi
3385
3386	else
3387
3388	# TRANSFER INNERHALB DIESES JOBS
3389	transfer_failed=false
3390	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
3391	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
3392	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3393	[[ $? != 0 ]] && transfer_failed=true
3394
3395	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3396	# LOKALER MASCHINE ANLEGEN
3397	if [[ $transfer_failed = true ]]
3398	then
3399	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3400	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3401
3402	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3403	# ANLEGEN
3404	eval local_catalog=${pathout[$i]}
3405	if [[ ! -d $local_catalog ]]
3406	then
3407	printf " *** local directory does not exist. Trying to create:\n"
3408	printf " $local_catalog \n"
3409	mkdir -p $local_catalog
3410	fi
3411
3412	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3413	transfer_problems=true
3414	fi
3415	fi
3416	else
3417
3418	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
3419	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
3420	actionout[$i]=a
3421	fi
3422	fi
3423
3424
3425	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
3426	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
3427	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
3428	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
3429	if [[ "${actionout[$i]}" = fl ]]
3430	then
3431	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3432	chmod g+rx $tmp_data_catalog
3433	if [[ $files_for_pes = false ]]
3434	then
3435	printf "\n >>> OUTPUT: ${localout[$i]} to"
3436	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3437	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
3438	else
3439	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
3440	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3441	mkdir $tmp_data_catalog/${frelout[$i]}
3442	cd ${localout[$i]}
3443	for file in $(ls *)
3444	do
3445	ln -f $file $tmp_data_catalog/${frelout[$i]}
3446	done
3447	cd $TEMPDIR
3448	fi
3449
3450
3451	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
3452	if [[ $store_on_archive_system = true ]]
3453	then
3454
3455	if [[ $archive_system = asterix ]]
3456	then
3457	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3458	if [[ $files_for_pes = false ]]
3459	then
3460	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3461	else
3462	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3463	fi
3464	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3465	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
3466	echo "then" >> archive_${frelout[$i]}
3467	echo " do_stageout=false" >> archive_${frelout[$i]}
3468	echo "else" >> archive_${frelout[$i]}
3469	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
3470	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
3471	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
3472	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
3473	if [[ $files_for_pes = false ]]
3474	then
3475	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
3476	else
3477	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
3478	fi
3479	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
3480	echo "fi" >> archive_${frelout[$i]}
3481	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3482	elif [[ $archive_system = DMF ]]
3483	then
3484	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3485	if [[ $files_for_pes = false ]]
3486	then
3487	printf "\n +++ archiving of single files impossible with $archive_system !\n"
3488	locat=DMF
3489	exit
3490	else
3491	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
3492	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
3493	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
3494	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
3495	fi
3496	elif [[ $archive_system = tivoli ]]
3497	then
3498	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3499	if [[ $files_for_pes = false ]]
3500	then
3501	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3502	echo "set -x" >> archive_${frelout[$i]}
3503	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3504	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3505	else
3506
3507	echo "set -x" >> archive_${frelout[$i]}
3508	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
3509	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3510	cd $tmp_data_catalog
3511	all_files=`ls -1 ${frelout[$i]}/*`
3512	cd - > /dev/null
3513	(( inode = 0 ))
3514	(( tp1 = tasks_per_node + 1 ))
3515	while (( inode < nodes ))
3516	do
3517	# echo "*** all_files = \"$all_files\" "
3518	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3519	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3520	# echo "*** tasks_per_node = \"$tasks_per_node\" "
3521	# echo "*** files = \"$files\" "
3522	# echo "*** all_files = \"$all_files\" "
3523	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3524	echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3525	echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3526	(( inode = inode + 1 ))
3527	done
3528	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3529	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3530	fi
3531	elif [[ $archive_system = ut ]]
3532	then
3533	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3534	if [[ $files_for_pes = false ]]
3535	then
3536	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3537	echo "set -x" >> archive_${frelout[$i]}
3538	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3539	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3540	else
3541
3542	echo "set -x" >> archive_${frelout[$i]}
3543	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
3544	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
3545	cd $tmp_data_catalog
3546	all_files=`ls -1 ${frelout[$i]}/*`
3547	cd - > /dev/null
3548	(( inode = 0 ))
3549	(( tp1 = tasks_per_node + 1 ))
3550	while (( inode < nodes ))
3551	do
3552	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3553	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3554	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3555	(( inode = inode + 1 ))
3556	done
3557	fi
3558	elif [[ $archive_system = none ]]
3559	then
3560	printf " +++ archiving on $localhost not available!\n"
3561	fi
3562
3563	if [[ $archive_system != none ]]
3564	then
3565	if [[ $localhost = ibmh \|\| $localhost = ibmb ]]
3566	then
3567	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
3568	subjob -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
3569	elif [[ $localhost = nech ]]
3570	then
3571	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
3572	fi
3573	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3574	fi
3575	else
3576	printf " +++ caution: option -A is switched on. No archiving on $archive_system!\n"
3577	fi
3578
3579
3580	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
3581	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
3582	if [[ $files_for_pes = false ]]
3583	then
3584	cat /dev/null > ${pathout[$i]}
3585	else
3586	mkdir -p ${pathout[$i]}
3587	fi
3588
3589	fi
3590
3591
3592	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
3593	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
3594	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
3595	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
3596	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
3597	# GEMAESSEN ARCHIVIERUNGEN GESETZT
3598	if [[ "${actionout[$i]}" = ar ]]
3599	then
3600	if [[ $files_for_pes = false ]]
3601	then
3602	printf "\n >>> OUTPUT: ${localout[$i]} to"
3603	printf "\n ${pathout[$i]}"
3604	printf "\n File will be copied to archive-system ($archive_system) !\n"
3605	else
3606	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
3607	printf "\n ${pathout[$i]}"
3608	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
3609	fi
3610	mv ${localout[$i]} ${frelout[$i]}
3611
3612	file_saved=false
3613
3614	if [[ $archive_system = asterix ]]
3615	then
3616	do_stageout=true
3617	(( stageout_anz = 0 ))
3618	while [[ $do_stageout = true ]]
3619	do
3620	if [[ $files_for_pes = false ]]
3621	then
3622	stageout ${frelout[$i]} > STAGE_OUTPUT
3623	else
3624	stageout -t ${frelout[$i]} > STAGE_OUTPUT
3625	fi
3626	cat STAGE_OUTPUT
3627	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
3628	then
3629	file_saved=true
3630	do_stageout=false
3631	else
3632	if [[ $files_for_pes = false ]]
3633	then
3634	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
3635	else
3636	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
3637	fi
3638	(( stageout_anz = stageout_anz + 1 ))
3639	if (( stageout_anz == 10 ))
3640	then
3641	printf "\n +++ stoped after 10 unsuccessful tries!"
3642	archive_save=false
3643	do_stageout=false
3644	else
3645	printf "\n *** new try to store on archive after 15 min:"
3646	sleep 900
3647	fi
3648	fi
3649	done
3650	elif [[ $archive_system = DMF ]]
3651	then
3652	if [[ $files_for_pes = false ]]
3653	then
3654	printf "\n +++ archiving of single files impossible on $archive_system!\n"
3655	locat=DMF
3656	exit
3657	else
3658	rm -rf $ARCHIVE/${frelout[$i]}
3659	cp -r ${frelout[$i]} $ARCHIVE
3660	fi
3661	file_saved=true
3662	elif [[ $archive_system = tivoli ]]
3663	then
3664	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
3665	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
3666	# GELEGT WERDEN
3667	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3668	chmod g+rx $tmp_data_catalog
3669	if [[ $files_for_pes = false ]]
3670	then
3671	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
3672	else
3673	mkdir $tmp_data_catalog/${frelout[$i]}
3674	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
3675	fi
3676
3677	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
3678	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
3679	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
3680	if [[ $files_for_pes = false ]]
3681	then
3682	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3683	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3684	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3685	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3686	else
3687	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3688	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3689	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3690	fi
3691
3692	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
3693	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3694	file_saved=true
3695
3696	elif [[ $archive_system = ut ]]
3697	then
3698	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
3699	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
3700	# GELEGT WERDEN
3701	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3702	chmod g+rx $tmp_data_catalog
3703	if [[ $files_for_pes = false ]]
3704	then
3705	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
3706	else
3707	mkdir $tmp_data_catalog/${frelout[$i]}
3708	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
3709	fi
3710
3711	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
3712	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
3713	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
3714	if [[ $files_for_pes = false ]]
3715	then
3716	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3717	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3718	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3719	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3720	else
3721	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3722	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3723	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3724	fi
3725
3726	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
3727	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3728	file_saved=true
3729
3730	else
3731	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
3732	archive_save=false
3733	fi
3734	if [[ $file_saved = true ]]
3735	then
3736	if [[ $files_for_pes = false ]]
3737	then
3738	cat /dev/null > ${pathout[$i]}
3739	else
3740	mkdir -p ${pathout[$i]}
3741	fi
3742	fi
3743	fi
3744
3745	# APPEND AUF LOKALER MASCHINE
3746	if [[ "${actionout[$i]}" = "a" ]]
3747	then
3748	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
3749	cat ${localout[$i]} >> ${pathout[$i]}
3750	fi
3751
3752	# KOPIEREN AUF LOKALER MASCHINE
3753	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
3754	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
3755	then
3756
3757	# KOPIEREN AUF EINPROZESSORMASCHINE
3758	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
3759	then
3760	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
3761	if [[ $link_local_output = true ]]
3762	then
3763	printf " using ln -f\n"
3764	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
3765	fi
3766	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
3767	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
3768	then
3769	if [[ $link_local_output = true ]]
3770	then
3771	printf " ln failed, using cp...\n"
3772	fi
3773	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
3774	fi
3775	else
3776	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
3777	if [[ $link_local_output = true ]]
3778	then
3779	printf " using ln -f\n"
3780	ln -f ${localout[$i]} ${pathout[$i]}
3781	fi
3782	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
3783	if [[ ! -f "${pathout[$i]}" ]]
3784	then
3785	if [[ $link_local_output = true ]]
3786	then
3787	printf " ln failed, using cp...\n"
3788	fi
3789	cp ${localout[$i]} ${pathout[$i]}
3790	fi
3791	fi
3792
3793	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
3794	then
3795
3796	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
3797	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
3798	# WIRD DANN KOPIERT
3799	# PER MOVE UMBENANNT WERDEN
3800	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
3801	if [[ $link_local_output = true ]]
3802	then
3803	printf " using ln -f\n"
3804	mkdir ${pathout[$i]}
3805	cd ${localout[$i]}
3806	for file in $(ls *)
3807	do
3808	ln -f $file ${pathout[$i]}
3809	done
3810	cd $TEMPDIR
3811	fi
3812	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
3813	if [[ ! -f "${pathout[$i]}/_0000" ]]
3814	then
3815	if [[ $link_local_output = true ]]
3816	then
3817	printf " ln failed for .../_0000, using cp...\n"
3818	fi
3819	cp -r ${localout[$i]} ${pathout[$i]}
3820	fi
3821
3822	fi
3823	fi
3824	done
3825	if (( i != 0 ))
3826	then
3827	if [[ $transfer_problems = true ]]
3828	then
3829	printf "\n$striche\n *** OUTPUT-files saved"
3830	printf "\n +++ WARNING: some data transfers failed! \n"
3831	else
3832	printf "\n$striche\n *** all OUTPUT-files saved \n"
3833	fi
3834	fi
3835
3836
3837	# EVENTUELL FOLGEJOB STARTEN
3838	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
3839	if [[ -f CONTINUE_RUN ]]
3840	then
3841
3842	if [[ $archive_save = true ]]
3843	then
3844
3845	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
3846	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
3847	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
3848	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
3849	# HANDEN
3850	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
3851	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
3852	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
3853	if [[ $(echo $mc \| grep -c "#") != 0 ]]
3854	then
3855	mc=`echo $mc \| sed 's/#/f/g'`
3856	fi
3857
3858
3859	# JOB STARTEN
3860	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
3861	echo " $mc"
3862	printf "\n$striche\n"
3863	if [[ $localhost != $fromhost ]]
3864	then
3865
3866	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms \|\| $localhost = lctit ]]
3867	then
3868	echo "*** ssh will be used to initiate restart-runs!"
3869	echo " return_addres=\"$return_addres\" "
3870	echo " return_username=\"$return_username\" "
3871	if [[ $return_addres = 172.20.25.41 ]]
3872	then
3873	# WORKAROUND AUF SCIROCCO AM TIT
3874	print "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc " \| ssh $return_addres -l $return_username
3875	else
3876	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
3877	fi
3878	else
3879	printf "\n +++ no restart mechanism available for host \"$localhost\" "
3880	locat=restart; exit
3881	fi
3882
3883	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
3884	# DER AKTUELLE JOB ENDET
3885	sleep 30
3886
3887	else
3888
3889	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
3890	# RUFEN WERDEN, AUSSER AUF lcfimm
3891	cd $LOCAL_PWD
3892	if [[ $localhost = lcfimm ]]
3893	then
3894	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
3895	else
3896	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
3897	fi
3898	cd - > /dev/null
3899	fi
3900	printf "\n$striche\n *** restart-run initiated \n"
3901
3902
3903	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
3904	# GEHOLT WORDEN SIND, LOESCHEN
3905	(( i = 0 ))
3906	while (( i < iin ))
3907	do
3908	(( i = i + 1 ))
3909	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
3910	then
3911	rm -r $tmp_data_catalog/${frelin[$i]}
3912	fi
3913	done
3914
3915	else
3916
3917	printf "\n +++ no restart-run possible, since errors occured"
3918	printf "\n during the archive process"
3919	fi
3920
3921	fi
3922
3923
3924
3925	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
3926	if [[ "$email_notification" != "" ]]
3927	then
3928
3929	if [[ $localhost != $fromhost ]]
3930	then
3931	if [[ -f CONTINUE_RUN ]]
3932	then
3933	echo "PALM restart run necessary" > email_text
3934	echo "description header of actual run:" >> email_text
3935	cat CONTINUE_RUN >> email_text
3936	echo "mrun-command to restart:" >> email_text
3937	echo "$mc" >> email_text
3938	else
3939	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
3940	fi
3941	mail $email_notification < email_text
3942	printf "\n *** email notification sent to \"$email_notification\" "
3943	fi
3944	fi
3945
3946
3947
3948	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
3949	cd $HOME
3950	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
3951
3952	else
3953
3954
3955	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
3956	# CHENDE AKTIONEN DURCHGEFUEHRT
3957
3958	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
3959	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
3960	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
3961	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
3962	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
3963	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
3964	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
3965	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
3966	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
3967	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
3968	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
3969	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
3970	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
3971	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
3972	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
3973	if [[ $use_openmp = true ]]
3974	then
3975	mrun_com=${mrun_com}" -O"
3976	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $threads_per_task"
3977	else
3978	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
3979	fi
3980	[[ $store_on_archive_system = false ]] && mrun_com=${mrun_com}" -A"
3981	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
3982	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
3983	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
3984	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
3985	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
3986	if [[ $do_remote = true ]]
3987	then
3988	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
3989	fi
3990
3991
3992	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
3993	jobfile=jobfile.$RANDOM
3994
3995
3996	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
3997	echo "mkdir $TEMPDIR" >> $jobfile
3998	echo "cd $TEMPDIR" >> $jobfile
3999
4000
4001	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4002	if [[ $do_trace = true ]]
4003	then
4004	echo "set -x" >> $jobfile
4005	else
4006	echo "set +vx" >> $jobfile
4007	fi
4008
4009
4010	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4011	# DATEI FUER DEN JOB
4012	if [[ $( echo $host \| cut -c1-5 ) = lcsgi ]]
4013	then
4014
4015	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4016	# KOPIEREN
4017	if [[ $restart_run != true ]]
4018	then
4019	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4020	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4021	fi
4022
4023	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4024	echo "set -x" >> $jobfile
4025	echo "scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4026	echo "export SOURCES_COMPLETE=true" >> $jobfile
4027
4028	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4029	# ARBEITSVERZEICHNIS VERSCHIEBEN
4030	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4031	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4032	echo "execute_mrun=true" >> $jobfile
4033	echo " " >> $jobfile
4034
4035	else
4036
4037	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4038	# SOWIE GEGEBENENFALLS DES MAKEFILES
4039	if [[ $do_compile = true ]]
4040	then
4041
4042	source_catalog=SOURCES_FOR_RUN_$fname
4043
4044	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4045	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4046	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4047	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4048	echo "export SOURCES_COMPLETE=true" >> $jobfile
4049	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4050
4051	for filename in $source_list
4052	do
4053	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4054	echo "cat > $filename << \"%END%\"" >> $jobfile
4055	cat $source_catalog/$filename >> $jobfile
4056	echo " " >> $jobfile
4057	echo "%END%" >> $jobfile
4058	echo " " >> $jobfile
4059	done
4060
4061	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4062	echo "cat > Makefile << \"%END%\"" >> $jobfile
4063	cat $source_catalog/Makefile >> $jobfile
4064	echo " " >> $jobfile
4065	echo "%END%" >> $jobfile
4066	echo " " >> $jobfile
4067
4068	echo "cd - > /dev/null" >> $jobfile
4069
4070	fi
4071
4072
4073	# ABSPEICHERN DER KONFIGURATIONSDATEI
4074	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4075	echo "cat > $config_file << \"%END%\"" >> $jobfile
4076	cat $config_file >> $jobfile
4077	echo "%END%" >> $jobfile
4078	echo " " >> $jobfile
4079
4080
4081	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
4082	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4083	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
4084	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
4085	echo "%END%" >> $jobfile
4086	if [[ $host = lctit ]]
4087	then
4088	echo "sed 's/bin\/ksh/home2\/usr5\/mkanda\/pub\/ksh/' < $mrun_script_name > mrun_new" >> $jobfile
4089	echo "mv mrun_new $mrun_script_name" >> $jobfile
4090	fi
4091	echo "chmod u+x $mrun_script_name" >> $jobfile
4092	echo "execute_mrun=true" >> $jobfile
4093	echo " " >> $jobfile
4094
4095	fi
4096
4097
4098	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
4099	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
4100	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
4101	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
4102	if [[ $do_remote = true ]]
4103	then
4104	(( i = 0 ))
4105	while (( i < iin ))
4106	do
4107	(( i = i + 1 ))
4108	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
4109	if [[ "${transin[$i]}" = job ]]
4110	then
4111	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
4112	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
4113	echo " " >> $jobfile
4114	echo "%END%" >> $jobfile
4115	else
4116	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
4117	fi
4118
4119	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
4120	echo "if [[ \$? = 1 ]]" >> $jobfile
4121	echo "then" >> $jobfile
4122	echo " echo \" \" " >> $jobfile
4123	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
4124	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
4125	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
4126	echo " execute_mrun=false" >> $jobfile
4127	echo "fi" >> $jobfile
4128	done
4129	fi
4130
4131	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
4132	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
4133	echo "LOCAL_PWD=$working_directory" >> $jobfile
4134	echo "export LOCAL_PWD" >> $jobfile
4135
4136	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
4137	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
4138	echo "export LOCAL_MRUN_PATH" >> $jobfile
4139
4140	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
4141	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
4142	then
4143	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
4144	fi
4145
4146	# MRUN AUF ZIELRECHNER AUFRUFEN
4147	echo "set -x" >> $jobfile
4148	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
4149
4150	echo 'ls -al; echo `pwd`' >> $jobfile
4151	echo "cd \$HOME" >> $jobfile
4152	echo "rm -rf $TEMPDIR" >> $jobfile
4153
4154
4155
4156
4157	# JOB PER SUBJOB STARTEN
4158	if [[ $silent = false ]]
4159	then
4160	printf "\n "
4161	else
4162	printf "\n\n"
4163	fi
4164
4165	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog $jobfile
4166	rm -rf $jobfile
4167
4168
4169	fi # ENDE REMOTE-TEIL
4170
4171
4172
4173	# ENDE DER PROZEDUR

Note: See TracBrowser for help on using the repository browser.

Download in other formats:

| Impressum | ©Leibniz Universität Hannover |