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source: palm/trunk/SCRIPTS/mrun @ 834

Last change on this file since 834 was 824, checked in by raasch, 13 years ago
preliminary checkin of new curvature/solution effects on droplet growth
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File size: 189.2 KB

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1	#!/bin/ksh
2	# mrun - script for running PALM jobs
3	# $Id: mrun 824 2012-02-17 09:09:57Z maronga $
4
5	# Procedure for interactive/batch PALM runs (initial runs and automatic
6	# restart runs)
7
8	# Last changes:
9	# 03/03/94 - Siggi - Entwicklungsbeginn
10	# 21/03/94 - Siggi - Entwicklungsabschluss (Version 1.0)
11	# 09/12/94 - Siggi - allexport unterbunden; statt dessen werden jetzt ein-
12	# zelne Variable exportiert. Dies ist noetig, weil an-
13	# sonsten irgendein Speicher ueberlaeuft und von mrun
14	# aufgerufene Programme (z.B. stageout) mit Fehlern
15	# abbrechen (too many arguments)
16	# 20/06/95 - Siggi - noclobber muss explizit abgeschaltet, da jetzt
17	# defaultmaessig im RRZN-Profile eingeschaltet
18	# 10/06/97 - Siggi - Zusaetzliche Option -C bei cpp, damit // nicht
19	# wegfallen
20	# 25/04/00 - Siggi - Version 1.5
21	# remote_addres und remote_user in return_addres bzw.
22	# return_username umbenannt, return_username wird dem
23	# mrun-Aufruf im Job ueber Option -U mitgegeben.
24	# Neue Variable remote_username, die beim interaktiven
25	# mrun-Aufruf zwingend ueber die neue Option -u oder
26	# in der Konfigurationsdatei angegeben werden muss.
27	# 08/02/01 - Siggi - Alle mrun-Meldungen ins englische uebersetzt,
28	# Version 1.7
29	# 05/05/02 - Siggi - Uebersetzungen mittels make-Mechanismus moeglich
30	# 21/11/02 - Siggi - ENV-Variable XLFRTEOPTS wird vor Ausfuehrung auf
31	# IBM gesetzt, um Record-Laenge der NAMELIST-Dateien,
32	# zu bestimmen; Praeprozessoroptionen haben nun alle
33	# die Form -Dtext=text, weil auf IBM sonst text durch
34	# die leere Zeichenkette ersetzt wird
35	# 01/08/03 - Siggi - Test of implementing dvrp+1PE on ibm
36	# 07/01/04 - Siggi - additional preprocessor directive for ibm included
37	# (-D$OMP=OMP) in order to avoid problems with
38	# OMP_NUM_THREADS
39	# 04/01/05 - Siggi - archiving on hanni and berni is done in separate
40	# tar files, one for each node used
41	# 07/01/04 - Siggi - old code for t3e, vpp and hpcs eliminated
42	# 09/01/05 - Siggi - workaround for getting the IP address on gfdl3
43	# 17/01/05 - Siggi - job for data transfer to local machine now within
44	# job class c1 (HLRN)
45	# 27/01/05 - Siggi - IP address workaround for gfdl3 removed
46	# 28/01/05 - Siggi - tar-filenames on $PERM (HLRN) now include the
47	# base filename and cycle number
48	# 16/02/05 - Gerald - hababai validated
49	# 14/03/05 - Siggi - abort on NEC after first runtime error (F_ERRCNT)
50	# 29/03/05 - Marcus - berni*-en0 validated
51	# 21/04/05 - Siggi - transfer-job-protocol for avs-data is no more stored
52	# 24/04/05 - Siggi - netcdf support on lcmuk
53	# 25/04/05 - Siggi - netcdf support on gfld3 (decalpha)
54	# 11/05/05 - Siggi - files with non-numeric extensions (.xxx after cycle
55	# number) can now be used within interactive runs
56	# 12/05/05 - Siggi - netcdf support on ibm
57	# 13/05/05 - Siggi - error in tar-filenames on $PERM (HLRN) removed
58	# 18/05/05 - Siggi - netcdf support on nec
59	# 24/05/05 - Siggi - netcdf support on ibms
60	# 14/06/05 - Siggi - sleep interval after submit of restart job increased
61	# to 30 seconds
62	# 28/06/05 - Siggi - bora adjusted to new intel compiler (LD_LIBRARY_
63	# PATH is temporarily set)
64	# 07/09/05 - Siggi - setting of MP_EAGER_LIMIT switched off because it
65	# caused warnings in the job protocol
66	# 20/10/05 - Siggi - update of netcdf-version on decalpha (gfdl3)
67	# 25/10/05 - Siggi - error in listing files for getting the cycle number
68	# removed
69	# 26/10/05 - Siggi - new paths for dvrp-library, transfer of catalogs
70	# realized by file attribute trpe
71	# 28/10/05 - Siggi - if existing, the file extension is output in case
72	# of missing input file - no job abort in case of
73	# missing input files with file extensions
74	# (preliminary solution)
75	# 31/10/05 - Siggi - data transfer from nech now within seperate job
76	# 04/11/05 - Siggi - netcdf 3.6.0-p1 on ibmh/ibmb
77	# 07/12/05 - Siggi - gallego and elephanta admitted
78	# 30/12/05 - Siggi - gfdl5 (ibmy) admitted
79	# 10/01/06 - Siggi - cpp directive for NetCDF 64bit support
80	# 20/01/06 - Siggi - cpp directive for ibmy
81	# 09/02/06 - Siggi - ibmy admitted for batch mode
82	# 13/04/06 - Siggi - ostria admitted
83	# 18/04/06 - Siggi - usage of OpenMP implemented (additional option -O)
84	# 10/05/06 - Siggi - environment variable XLSMPOPTS set on IBM for
85	# optimization of OpenMP runs (option stacksize is
86	# necessary for large gridpoint numbers because
87	# otherwise a segmentation fault occurs)
88	# 23/05/05 - Siggi - lctit (SUN Fire X4600) admitted
89	# 21/08/06 - Siggi - standard mrun path on scirocco is as on bora
90	# 23/08/06 - Siggi - netcdf support for scirocco (notebook)
91	# 20/09/06 - Marcus - add DVRP library on nech
92	# 24/10/06 - Siggi - Environment variables for PALM steering are written
93	# on local NAMELIST file ENVPAR
94	# 24/11/06 - Siggi - levanto admitted, maestro switched to ifc 9.1
95	# 28/11/06 - Siggi - call to interpret_config.x_levanto because of SuSe 10
96	# 06/02/07 - Siggi - add DVRP library on lcmuk
97	# 07/02/07 - Siggi - revision of source code handling, source code is
98	# now expected in directory given by source_path and
99	# not in the current working directory, source code
100	# files provided in add_source_path are allways
101	# compiled, source code to be compiled is allways
102	# sampled in SOURCES_FOR_RUN_$fname which is a
103	# subdirectory of the current working directory,
104	# -s TEST changed to -s WRITE_PERMIT or -s WP,
105	# adapted for RIAM (neck)
106	# bugfix for cycle number of output file (extout)
107	# all hpmuk-related code removed
108	# 14/02/07 - Siggi - dvrp support for neck added
109	# 28/02/07 - Siggi - empty lines in configuration file are accepted
110	# mrun_path replaced by PALM_BIN,
111	# all machines are calling interpret_config.x
112	# 14/03/07 - Siggi - fimm admitted, revision number added to terminal
113	# output
114	# 16/03/07 - Siggi - adjustments for lctit
115	# 29/03/07 - Siggi - global revision transfered to batch job by new
116	# option -G
117	# 30/03/07 - Siggi - compilation "by hand" removed, cpp-directives/options
118	# + netcdf/dvrp-options are read from configuration
119	# file, host identifier (local_host) is read from
120	# config file, code related to ftp filetransfer
121	# removed (incl. option -f)
122	# 19/06/07 - Siggi - time limit for cdata jobs increased
123	# 25/07/07 - Siggi - two sets of executables can be started on lcmuk,
124	# if new option -Y (coupling) is given,
125	# output of executables to aout_output removed,
126	# messages are immediately written to stdout instead
127	# 03/08/07 - Marcus - add XOPT="-X $numprocs" for lcfimm
128	# 09/08/07 - Marcus - workaround on lcfimm to propagate environment
129	# variables out to the nodes in coupled mode -disabled-
130	# 13/08/07 - Marcus - start local restart jobs per ssh on lcfimm
131	# 28/08/07 - Marcus - completely remove workaround on lcfimm to propagate
132	# environment variables out to the nodes in coupled mode
133	# 15/10/07 - Siggi - Preliminary adjustments for lctit, based on Jin's
134	# suggestions
135	# 19/10/07 - Marcus - further adjustments for lctit: add new optional
136	# argument -g group_number, admit all sla* node_usage
137	# queues
138	# 30/10/07 - Marcus - further adjustments for queues on lctit
139	# 14/02/08 - Bjoern - link of restart files with long file name possible
140	# 28/02/08 - Marcus - If environment variable link_local_output is set to
141	# true, mrun tries "ln -f" on local output and resorts
142	# to "cp" or "cp -r" on error
143	# 15/04/08 - Siggi - argument -c introduced to most of the subjob calls,
144	# which allows the user to choose his own job catalog
145	# by setting job_catalog in the configuration file
146	# (default is ~/job_queue),
147	# workaround for mpiexec with -env option,
148	# adjustments for lcxt4 (Bergen Center for Computational
149	# Science)
150	# 22/05/08 - Marcus - If environment variable link_local_input is set to
151	# true, mrun tries "ln -f" on local input and resorts
152	# to "cp" or "cp -r" on error
153	# 27/05/08 - Siggi - PATH is set to PALM_BIN everywhere (missing so far)
154	# 14/07/08 - Siggi - adjustments for lcsgih
155	# 08/08/08 - Marcus - typo removed in lcxt4 branch
156	# 17/09/08 - Siggi - restart mechanism adjusted for lcsgi
157	# 02/10/08 - BjornM - argument "-Y" modified, adjustments for coupled runs
158	# 21/10/08 - Siggi - bugfix for the case that -K has more than one
159	# argument
160	# 08/11/08 - Siggi - bugfix for depository path settings in configuration
161	# file
162	# 11/11/08 - Siggi - rules for using user code files changed: user
163	# code splitted into one file per subroutine,
164	# user can provide his/her own makefile, only
165	# default source-code filenames are allowed
166	# 14/11/08 - Siggi - cond1 and cond2 are part of the depository name
167	# 08/01/09 - Siggi - mpi module on sgi machines to be used can be set
168	# with environment variable mpilib
169	# 13/01/09 - Siggi - totalview on hice/bice can be used in debug mode
170	# using environment variable totalview
171	# 25/02/09 - Siggi - cputime-option (-t) is allowed to be omitted for
172	# interactive runs
173	# 05/03/09 - Siggi - adjustments for new NEC-SX9 at RIAM (necriam)
174	# 16/03/09 - Siggi - dvrp_lib, dvrp_inc replaced by dvr_lib, dvr_inc,
175	# dvr streaming server is automatically started using
176	# new variable dvr_server and a configuration file
177	# .dvrserver.config,
178	# processing of dvr output files using new script
179	# process_dvr_output implemented, in order to make
180	# dvr application more user friendly
181	# 20/03/09 - Marcus - update of n1ge command for lctit
182	# 16/04/09 - Siggi - new option -y for precursor (uncoupled) ocean runs
183	# to be followed by a coupled atmosphere-ocean run
184	# 21/04/09 - Siggi - adjustments for new IBM at DKRZ, which is now ibmh
185	# 24/06/09 - BjornM - adjustments for coupled/precursor runs on ibmy
186	# 08/07/09 - Siggi - default value for email_notification is none,
187	# option -e added to subjob
188	# 19/08/09 - Marcus - MPI debug option
189	# 21/08/09 - Marcus - totalview on hice/bice also available for mvapich2
190	# 25/08/09 - BjornM - adpated for lck
191	# 26/08/09 - Siggi - additional environment variables for mpt on ice2
192	# 26/08/09 - Marcus - adjustment for ice2 on lcsgib
193	# 29/09/09 - Siggi - default value for archiving is false, option "-A"
194	# switches on archiving, archiving on SGI-ICE enabled
195	# 16/10/09 - Carolin- adjustments for archiving on SGI-ICE of binary files;
196	# adjustment for special1q
197	# 18/12/09 - Carolin- modification of archiving (permq)
198	# 01/02/10 - Siggi - adapted for lcxt5m and lckyoto (Fujitsu HX600)
199	# 03/02/10 - Siggi - make options (mopts) to be set by configuration file
200	# implemented
201	# 08/02/10 - Siggi - loading of modules now controlled via configuration
202	# file (modules)
203	# 02/03/10 - Siggi - for each block in the configuration file, separate
204	# utility programs are used, combine_plot_fields is
205	# directly called and must not be given by an output
206	# command in the configuration file any more
207	# 15/06/10 - Rieke - ssh from compute nodes to login nodes on hosts
208	# lcsgih/lcsgib is done using the names
209	# hicegate0/bicegate0 instead of the IP addresses
210	# 17/08/10 - BjornM - adjustments for interactive runs on lcxt4
211	# 07/09/10 - Siggi - bugfix for wrong netcdf/3.6.3 module on lcsgi
212	# 08/12/10 - Siggi - new handling of openmp/hybrid runs, option -O
213	# has now argument threads_per_task
214	# adjustments for Kyushu Univ. (lcrte, ibmku)
215	# 14/12/10 - Siggi - adjustments for new Tsubame system at Tokyo
216	# institute of technology (lctit)
217	# 23/12/10 - Micha - different number of processors in ocean and
218	# atmosphere is now allowed
219	# 02/02/10 - Siggi - further adjustments on Tsubame and concerning openMP
220	# usage
221	# 09/03/10 - Siggi - adjustments for ibmkisti, mpt bugfix for netCDF4
222	# usage, totalview usage extended
223	# 17/03/11 - Siggi - adjustments for openmp usage on ibmkisti
224	# 03/04/11 - Micha - added lckordi
225	# 06/04/11 - BjornM - bugfix for runs with mpt on lcsgi
226	# 17/08/11 - Siggi - extensions for impi library
227	# 18/08/11 - Siggi - bugfix for local append of output files with suffix
228	# (.nc)
229	# 18/08/11 - Marcus - support for Linux OS with German locale
230	# - properly report hosts on general Linux clusters
231	# 29/08/11 - BjornW - adapted for lcflow (ForWind cluster in Oldenburg)
232	# 29/08/11 - Carolin- initiating restart-run: adjustment of the path at
233	# IMUK
234	# 15/09/11 - Siggi - new option -w tp set the maximum number of parallel
235	# io streams, option -T is obligatory from now on
236	# 25/01/12 - BjornM - a namelist file check prior to the model run has
237	# been implemented (check_namelist_files).
238	# New option -z can be used to skip the check
239	# 03/02/12 - BjornM - namelist file check temporary disabled
240	# until severel bugs are fixed
241	# 08/02/12 - BjornM - bugfixes: skipping namelist file check in case of
242	# restart runs. check is now possible with topography
243	# and the -v (silent) option is considered
244	# 14/02/12 - BjornM/- bugfix: removed slash in \$queue, changed default
245	# Farah queue for lcsgi to testq, since bigq is not
246	# available on ice1
247	# 16/02/12 - BjornM - bugfix: replaced $localhost by $host in the ENVPAR
248	# file, which is generated for the namelist file check
249	# 17/02/12 - Siggi - -z included in description of options (mrun ?)
250
251
252
253	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
254
255	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
256	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
257	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
258
259	AddFilenames=""
260	additional_conditions=""
261	add_source_path=""
262	afname=""
263	archive_save=true
264	archive_system=none
265	check_namelist_files=true
266	compiler_name=""
267	cond1=""
268	cond2=""
269	config_file=.mrun.config
270	coupled_dist=""
271	coupled_mode="mpi1"
272	cpp_opts=""
273	cpp_options=""
274	cpumax=0
275	cpurest=0
276	delete_temporary_catalog=true
277	do_batch=false
278	do_compile=true
279	do_remote=false
280	do_stagein=true
281	do_stageout=true
282	do_trace=false
283	email_notification="none"
284	exclude=""
285	executable=""
286	execution_error=false
287	fimm=false
288	fname=test
289	fromhost=""
290	global_revision=""
291	group_number=none
292	host=""
293	host_file=""
294	hp=""
295	ignore_archive_error=false
296	input_list=""
297	interpreted_config_file=""
298	job_catalog="~/job_queue"
299	job_on_file=""
300	keep_data_from_previous_run=false
301	link_local_input=false
302	link_local_output=false
303	localhost_realname=$(hostname)
304	local_compile=false
305	local_dvrserver_running=.FALSE.
306	locat=normal
307	mainprog=""
308	makefile=""
309	max_par_io_str=""
310	mc=$0
311	while [[ $(echo $mc \| grep -c "/") != 0 ]]
312	do
313	mc=`echo $mc \| cut -f2- -d"/"`
314	done
315	module_calls=""
316	mrun_script_name=$mc
317	netcdf_inc=""
318	netcdf_lib=""
319	netcdf_support=false
320	node_usage=default
321	numprocs=""
322	numprocs_atmos=0
323	numprocs_ocean=0
324	OOPT=""
325	openmp=false
326	output_list=""
327	package_list=""
328	punkte="..........................................................."
329	p3d_suffix=""
330	queue=none
331	read_from_config=""
332	restart_run=false
333	if [[ `hostname` = rte10 ]]
334	then
335	return_addres=133.5.185.60
336	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
337	elif [[ `hostname` = climate0 ]]
338	then
339	return_addres=165.132.26.68
340	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
341	else
342	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
343	fi
344	return_password=""
345	return_username=$LOGNAME
346	remotecall=false
347	remote_username=""
348	run_coupled_model=false
349	run_mode=""
350	scirocco=false
351	store_on_archive_system=false
352	striche=" ----------------------------------------------------------------------------"
353	silent=false
354	source_list=""
355	source_path=SOURCE
356	tasks_per_node=""
357	threads_per_task=1
358	tmpcreate=false
359	tmp_data_catalog=""
360	transfer_problems=false
361	usern=$LOGNAME
362	use_openmp=false
363	working_directory=`pwd`
364	TOPT=""
365	XOPT=""
366	zeit=$( date \| cut -c 12-19 )
367
368	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
369	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
370
371	typeset -R30 calltime
372	typeset -L20 spalte1
373	typeset -L40 spalte2
374	typeset -L60 spalte3
375	typeset -L35 string1=`date`
376	typeset -L12 string2=$usern
377	typeset -L12 string3=$localhost_realname
378	typeset -L12 string4
379	typeset -L12 string5
380	typeset -L30 version="MRUN 2.0 Rev$Rev: 824 $"
381
382
383
384	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
385	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
386
387	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
388	# EXPORTIERT WERDEN
389	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
390	export group_number input_list memory numprocs output_list queue run_mode
391
392
393
394	# FEHLERBEHANDLUNG
395	# BEI EXIT:
396	trap 'rm -rf $working_directory/tmp_mrun
397	if [[ $locat != localhost ]]
398	then
399	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
400	# then
401	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
402	#MRUN-calls on $localhost
403	#
404	#date and time user localhost remotehost termination mrun-command
405	#--------------------------------------------------------------------------------------------------------------------
406	#%STATEND%
407	# chmod 666 ${mrun_path}/statistik/mrun_statistik
408	# fi
409	#
410	# # EINTRAG IN DIE STATISTIK-DATEI
411	# string4=$host
412	# string5=$locat
413	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
414	# then
415	# if [[ $do_batch = true ]]
416	# then
417	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
418	# else
419	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
420	# fi
421	# fi
422	echo " " > /dev/null
423	fi
424
425	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
426	then
427
428	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
429	(( i = 0 ))
430	while (( i < iec ))
431	do
432	(( i = i + 1 ))
433	printf "\n *** Execution of ERROR-command:\n"
434	printf " >>> ${err_command[$i]}\n"
435	eval ${err_command[$i]}
436	done
437	if [[ -n $interpreted_config_file ]] then
438	rm -rf $interpreted_config_file
439	fi
440	if [[ -n .mrun_environment ]] then
441	rm -rf .mrun_environment
442	fi
443	if [[ $tmpcreate = true ]]
444	then
445	printf "\n *** Contents of \"$TEMPDIR\":\n"
446	ls -al; cd
447	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
448	fi
449	if [[ "$dvrserver_id" != "" ]]
450	then
451	echo "+++ killing dvrserver_id=$dvrserver_id"
452	kill $dvrserver_id
453	fi
454	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
455	then
456	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
457	fi
458	printf "\n\n+++ MRUN killed \n\n"
459	elif [[ $locat != control_c ]]
460	then
461	printf "\n\n --> all actions finished\n\n"
462	printf " Bye, bye $usern !!\n\n"
463	fi' exit
464
465
466	# BEI TERMINAL-BREAK:
467	trap 'rm -rf $working_directory/tmp_mrun
468	rm -rf $working_directory/tmp_check_namelist_files
469	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
470	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
471	then
472	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
473	fi
474	if [[ "$dvrserver_id" != "" ]]
475	then
476	echo "+++ killing dvrserver_id=$dvrserver_id"
477	kill $dvrserver_id
478	fi
479	printf "\n+++ MRUN killed by \"^C\" \n\n"
480	locat=control_c
481	exit
482	' 2
483
484
485	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
486	# BEEN SET
487	if [[ "$PALM_BIN" = "" ]]
488	then
489	printf "\n +++ environment variable PALM_BIN has not been set"
490	printf "\n please set it to the directory where the PALM scripts are located"
491	locat=palm_bin; exit
492	fi
493	export PATH=$PALM_BIN:$PATH
494
495
496
497	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
498	# FUER FOLGEJOBS BENOETIGT WIRD
499	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vw:xX:yY:z option
500	do
501	case $option in
502	(a) afname=$OPTARG;;
503	(A) store_on_archive_system=true; mc="$mc -A";;
504	(b) do_batch=true; mc="$mc -b";;
505	(B) delete_temporary_catalog=false; mc="$mc -B";;
506	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
507	(C) restart_run=true; mc="$mc -C";;
508	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
509	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
510	(F) job_on_file="-D"; mc="$mc -F";;
511	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
512	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
513	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
514	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
515	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
516	(I) ignore_archive_error=true; mc="$mc -I";;
517	(k) keep_data_from_previous_run=true; mc="$mc -k";;
518	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
519	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
520	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
521	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
522	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
523	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
524	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
525	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
526	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
527	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
528	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
529	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
530	(S) read_from_config=false; mc="$mc -S";;
531	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
532	(T) mrun_tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
533	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
534	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
535	(v) silent=true; mc="$mc -v";;
536	(w) max_par_io_str=$OPTARG; mc="$mc -w$OPTARG";;
537	(x) do_trace=true;set -x; mc="$mc -x";;
538	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
539	(y) ocean_file_appendix=true; mc="$mc -y";;
540	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
541	(z) check_namelist_files=false; mc="$mc -z";;
542	(\?) printf "\n +++ unknown option $OPTARG \n"
543	printf "\n --> type \"$0 ?\" for available options \n"
544	locat=parameter;exit;;
545	esac
546	done
547
548
549	# EVTL. POSITIONSPARAMETER EINLESEN
550	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
551	shift OPTIND-1
552
553
554	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
555	if [[ "$1" = "?" ]]
556	then
557	(printf "\n *** mrun can be called as follows:\n"
558	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. <modus>\n"
559	printf "\n Description of available options:\n"
560	printf "\n Option Description Default-Value"
561	printf "\n -a base name of input files equiv. -d"
562	printf "\n -A archiving when using file-attribute fl"
563	printf "\n -b batch-job on local machine ---"
564	printf "\n -B do not delete temporary directory at end ---"
565	printf "\n -c configuration file .mrun.config"
566	printf "\n -d base name of files attached to program test"
567	printf "\n -D preprocessor(cpp)-directives \"\" "
568	printf "\n -F create remote job file only ---"
569	printf "\n -h execution host $localhost_realname"
570	printf "\n -i INPUT control list \"\" "
571	printf "\n -I archiving errors of previous batch-jobs"
572	printf "\n will be ignored"
573	printf "\n -k keep data from previous run"
574	printf "\n -K additional conditions for controling"
575	printf "\n usage of conditional code and"
576	printf "\n env-variables in configuration file \"\" "
577	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
578	printf "\n -M Makefile name Makefile"
579	printf "\n -n node usage (shared/not_shared) depending on -h"
580	printf "\n -o OUTPUT control list \"\" "
581	printf "\n -O use OpenMP ---"
582	printf "\n -p software package list \"\" "
583	printf "\n -q queue \"$queue\" "
584	printf "\n -r run control list (combines -i -o) \"\" "
585	printf "\n -s filenames of routines to be compiled \"\" "
586	printf "\n must end with .f, .f90, .F, or .c !"
587	printf "\n use \"..\" for more than one file and wildcards"
588	printf "\n -s TEST compiles all files with w-permit"
589	printf "\n -S config file interpreted by shellscript ---"
590	printf "\n -t allowed cpu-time in seconds (batch) 0"
591	printf "\n -T tasks per node depending on -h"
592	printf "\n -u username on remote machine \"\" "
593	printf "\n -v no prompt for confirmation ---"
594	printf "\n -w maximum parallel io streams as given by -X"
595	printf "\n -x tracing of mrun for debug purposes ---"
596	printf "\n -X # of processors (on parallel machines) 1"
597	printf "\n -y add appendix \"_O\" to all local output"
598	printf "\n files (ocean precursor runs followed by"
599	printf "\n coupled atmosphere-ocean runs) ---"
600	printf "\n -Y run coupled model, \"#1 #2\" with"
601	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
602	printf "\n -z no parameter file check ---"
603	printf "\n "
604	printf "\n Possible values of positional parameter <modus>:"
605	printf "\n \"?\" - this outline \n\n") \| more
606	exit
607	elif [[ "$1" != "" ]]
608	then
609	printf "\n +++ positional parameter $1 unknown \n"
610	locat=parameter; exit
611	fi
612
613
614
615	# KURZE STARTMELDUNG
616	printf "\n*** $version "
617	printf "\n will be executed. Please wait ..."
618
619
620
621	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
622	if [[ ! -f $config_file ]]
623	then
624	printf "\n\n +++ configuration file: "
625	printf "\n $config_file"
626	printf "\n does not exist"
627	locat=connect; exit
628	fi
629
630
631	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
632	line=""
633	grep "%host_identifier" $config_file > tmp_mrun
634	while read line
635	do
636	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
637	then
638	HOSTNAME=`echo $line \| cut -d" " -s -f2`
639	host_identifier=`echo $line \| cut -d" " -s -f3`
640	if [[ $localhost_realname = $HOSTNAME ]]
641	then
642	localhost=$host_identifier
643	break
644	fi
645	fi
646	done < tmp_mrun
647
648	if [[ "$localhost" = "" ]]
649	then
650	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
651	printf "\n for local host \"$localhost_realname\"."
652	printf "\n Please add line"
653	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
654	printf "\n to the configuration file."
655	locat=localhost; exit
656	fi
657
658
659	# HOSTSPEZIFISCHE VARIABLEN SETZEN
660	case $localhost_realname in
661	(r1\|r2\|h01\|b01) archive_system=tivoli;;
662	(cs*) archive_system=ut;;
663	(fimm.bccs.uib.no) fimm=true;;
664	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
665	(scirocco) scirocco=true;;
666	esac
667
668
669
670	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
671	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
672	[[ "$afname" = "" ]] && afname=$fname
673
674
675	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
676	if [[ "$run_mode" != "" ]]
677	then
678	input_list="$input_list $run_mode"
679	output_list="$output_list $run_mode"
680	fi
681
682
683	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
684	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
685	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
686	# STARTET)
687	if [[ "$fromhost" = "" ]]
688	then
689	fromhost=$localhost
690	fi
691
692
693	# PRUEFEN, OB MRUN NUR TESTWEISE AUF DER LOKALEN MASCHINE KOMPILIEREN SOLL
694	if [[ "$source_list" = LOCAL_COMPILE_TEST ]]
695	then
696	source_list=TEST
697	local_compile=true
698	host=$localhost
699	fi
700
701
702	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
703	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
704	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
705	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
706	if [[ -n $host && "$host" != $localhost ]]
707	then
708	do_batch=true
709	do_remote=true
710	case $host in
711	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|nech\|necriam\|lckyoto\|lcsgib\|lcsgih\|unics\|lcxt4\|lcxt5m\|lck\|lckordi) true;;
712	(*) printf "\n"
713	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
714	printf "\n is not available"
715	locat=nqs; (( iec = 0 )); exit;;
716	esac
717	else
718	host=$localhost
719	fi
720
721
722	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
723	if [[ -n $additional_conditions ]]
724	then
725	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
726	cond1=`echo $additional_conditions \| cut -d" " -f1`
727	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
728	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
729	if [[ -n $dummy ]]
730	then
731	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
732	locat=options; exit
733	fi
734	block=_$cond1
735	[[ -n $cond2 ]] && block=${block}_$cond2
736	fi
737
738
739	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
740	if [[ $run_coupled_model = true ]]
741	then
742
743	if [[ -n $coupled_dist ]]
744	then
745
746	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
747	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
748
749	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
750	then
751
752	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
753	printf "\n PEs (total) : $numprocs"
754	printf "\n PEs (atmosphere): $numprocs_atmos"
755	printf "\n PEs (ocean) : $numprocs_ocean"
756	locat=coupling; exit
757
758	fi
759
760	else
761
762	(( numprocs_ocean = $numprocs / 2 ))
763	(( numprocs_atmos = $numprocs / 2 ))
764
765	fi
766	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
767
768	# GET coupled_mode FROM THE CONFIG FILE
769	line=""
770	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
771	while read line
772	do
773	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && ( $(echo $line \| cut -d" " -s -f4) = $cond1 \|\| $(echo $line \| cut -d" " -s -f4) = $cond2 ) ]]
774	then
775	coupled_mode="mpi2"
776	fi
777	done < tmp_mrun
778
779	fi
780
781
782	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
783	# ARCHIVIERUNG FEHLGESCHLAGEN IST
784	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
785	then
786	if [[ $ignore_archive_error = false ]]
787	then
788	printf "\n +++ data archiving of previous run failed"
789	printf "\n see directory \~/job_queue on remote machine"
790	locat=archive; exit
791	else
792	printf "\n +++ warning: data archiving in a previous run failed"
793	printf "\n MRUN continues, trying to get backup copy"
794	fi
795	fi
796
797
798
799	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
800	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
801	if [[ "$read_from_config" = false ]]
802	then
803
804	[[ $silent = false ]] && printf "\n Reading the configuration file... "
805	while read zeile
806	do
807	[[ $silent = false ]] && printf "."
808
809
810	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
811	# ERSETZEN
812	eval zeile=\"$zeile\"
813
814
815	# INTERPRETATION DER ZEILE
816	if [[ "$(echo $zeile)" = "" ]]
817	then
818	# LEERZEILE, KEINE AKTION
819	continue
820
821	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
822	then
823
824	# ZEILE IST KOMMENTARZEILE
825	true
826
827	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
828	then
829
830	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
831	zeile=$(echo $zeile \| cut -c2-)
832	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
833	var=`echo $zeile \| cut -d" " -f1`
834	value=`echo $zeile \| cut -d" " -s -f2`
835	for_host=`echo $zeile \| cut -d" " -s -f3`
836	for_cond1=`echo $zeile \| cut -d" " -s -f4`
837	for_cond2=`echo $zeile \| cut -d" " -s -f5`
838
839	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
840	then
841
842	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
843	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
844	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
845
846
847	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
848	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
849	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
850	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
851	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
852	# KONFIGURATIONSDATEI
853	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
854	then
855	eval $var=\$value
856
857	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
858	if [[ $do_trace = true ]]
859	then
860	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
861	fi
862	fi
863
864	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
865	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
866	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
867	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
868	if [[ $var = host ]]
869	then
870	if [[ -n $host && "$host" != $localhost ]]
871	then
872	do_batch=true
873	do_remote=true
874	case $host in
875	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxt4\|lcxt5m\|lck\|lckordi) true;;
876	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
877	printf "\n is not available"
878	locat=nqs; exit;;
879	esac
880	else
881	host=$localhost
882	fi
883	fi
884
885	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
886	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
887	# DEN PROGRAMMEN BENOETIGT WERDEN
888	export $var
889	fi
890
891
892
893
894	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
895	then
896
897	# ZEILE DEFINIERT ERROR-KOMMANDO
898	(( iec = iec + 1 ))
899	zeile=$(echo $zeile \| cut -c4-)
900	err_command[$iec]="$zeile"
901
902	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
903	then
904
905	# ZEILE DEFINIERT INPUT-KOMMANDO
906	(( iic = iic + 1 ))
907	zeile=$(echo $zeile \| cut -c4-)
908	in_command[$iic]="$zeile"
909
910	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
911	then
912
913	# ZEILE DEFINIERT OUTPUT-KOMMANDO
914	(( ioc = ioc + 1 ))
915	zeile=$(echo $zeile \| cut -c4-)
916	out_command[$ioc]="$zeile"
917
918	else
919
920	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
921	# s2a: in/out - Feld
922	# s2b: loc - Feld (optional)
923	# s2c: tr/ar - Feld (optional)
924	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
925	s1=`echo $zeile \| cut -d" " -f1`
926	s2=`echo $zeile \| cut -d" " -s -f2`
927	s2a=$(echo $s2 \| cut -d":" -f1)
928	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
929	then
930	s2b=""
931	s2c=""
932	else
933	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
934	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
935	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
936	fi
937	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
938	s3=`echo $zeile \| cut -d" " -f3`
939	s4=`echo $zeile \| cut -d" " -s -f4`
940	s5=`echo $zeile \| cut -d" " -s -f5`
941	s6=`echo $zeile \| cut -d" " -s -f6`
942
943
944	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
945	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
946	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
947	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
948	# HANDEN SEIN MUSS (D.H. s2b = loc)
949	IFSALT="$IFS"; IFS="$IFS:"
950	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
951	then
952	found=false
953	for actual in $input_list
954	do
955	for formal in $s3
956	do
957	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
958	done
959	done
960	if [[ $found = true ]]
961	then
962	(( iin = iin + 1 ))
963	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
964	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
965	extin[$iin]=$s6
966	fi
967	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
968	then
969	found=false
970	for actual in $output_list
971	do
972	for formal in $s3
973	do
974	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
975	done
976	done
977	if [[ $found = true ]]
978	then
979	(( iout = iout + 1 ))
980	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
981	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
982	fi
983	elif [[ "$s2a" != in && "$s2a" != out ]]
984	then
985	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
986	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
987	locat=connect; exit
988	fi
989	IFS="$IFSALT"
990	fi
991	done < $config_file
992
993	else
994
995
996	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
997	[[ $silent = false ]] && printf "..."
998	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
999	export interpreted_config_file=.icf.$RANDOM
1000
1001
1002
1003	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
1004	# VERFUEGUNG STELLEN
1005	cat > .mrun_environment << %%END%%
1006	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
1007	config_file = '$config_file', do_remote = '$do_remote',
1008	do_trace = '$do_trace', host = '$host',
1009	input_list = '$input_list', icf = '$interpreted_config_file',
1010	localhost = '$localhost', output_list = '$output_list' /
1011
1012	%%END%%
1013
1014	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
1015	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
1016	mrun_memory=$memory
1017	mrun_group_number=$group_number
1018	mrun_cpumax=$cpumax
1019	mrun_numprocs=$numprocs
1020
1021	if [[ $localhost_realname = "sx-fep" ]]
1022	then
1023	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
1024	else
1025
1026	if [[ "$host" != $localhost ]]
1027	then
1028
1029	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
1030	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
1031	if [[ $? != 0 ]]
1032	then
1033	printf "\n\n +++ no interpret_config found"
1034	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
1035	locat=interpret_config; exit
1036	fi
1037	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
1038	$interpret_config_executable
1039
1040	else
1041
1042	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
1043	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
1044	then
1045	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
1046	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
1047	locat=interpret_config; exit
1048	else
1049	interpret_config${block}.x
1050	fi
1051
1052	fi
1053	fi
1054	rm .mrun_environment
1055
1056
1057	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
1058	chmod u+x $interpreted_config_file
1059	export PATH=$PATH:.
1060	. $interpreted_config_file
1061	rm $interpreted_config_file
1062
1063
1064	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
1065	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
1066	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
1067	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
1068	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
1069	[[ "$max_par_io_str" != "" ]] && maximum_parallel_io_streams=$max_par_io_str
1070	[[ "$mrun_tasks_per_node" != "" ]] && tasks_per_node=$mrun_tasks_per_node
1071
1072	fi
1073
1074
1075	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
1076	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
1077	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
1078	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
1079	if [[ "$SOURCES_COMPLETE" = "" ]]
1080	then
1081
1082	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
1083	# VEREINBART WURDE
1084	source_path=""
1085	line=""
1086	grep "%source_path" $config_file > tmp_mrun
1087	while read line
1088	do
1089	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1090	then
1091	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
1092	then
1093	global_source_path=`echo $line \| cut -d" " -f2`
1094	fi
1095	fi
1096	done < tmp_mrun
1097
1098	line=""
1099	found=false
1100	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
1101	while read line
1102	do
1103	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1104	then
1105	if [[ $found = true ]]
1106	then
1107	printf "\n\n +++ more than one source path found in configuration file"
1108	printf "\n for local host \"$localhost\" "
1109	locat=source_path; exit
1110	fi
1111	source_path=`echo $line \| cut -d" " -f2`
1112	found=true
1113	fi
1114	done < tmp_mrun
1115	rm tmp_mrun
1116
1117	if [[ "$source_path" = "" ]]
1118	then
1119	if [[ "$global_source_path" != "" ]]
1120	then
1121	source_path=$global_source_path
1122	else
1123	printf "\n\n +++ no source path found in configuration file"
1124	printf "\n for local host \"$localhost\" "
1125	locat=source_path; exit
1126	fi
1127	fi
1128	eval source_path=$source_path
1129
1130	if [[ ! -d $source_path ]]
1131	then
1132	printf "\n\n +++ source path \"$source_path\" on local host"
1133	printf "\n \"$localhost\" does not exist"
1134	locat=source_path; exit
1135	fi
1136
1137	fi
1138
1139
1140	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
1141	# DURCH OPTION -G MITGETEILT)
1142	if [[ "$global_revision" = "" && $host != "ibmkisti" ]]
1143	then
1144	global_revision=`svnversion $source_path 2>/dev/null`
1145	global_revision="Rev: $global_revision"
1146	fi
1147
1148
1149	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
1150	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
1151	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
1152	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
1153	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
1154	if [[ -n $host && "$host" != $localhost ]]
1155	then
1156	do_batch=true
1157	do_remote=true
1158	case $host in
1159	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxt4\|lcxt5m\|lck\|lckordi) true;;
1160	(*) printf "\n"
1161	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
1162	printf "\n is not available"
1163	locat=nqs; (( iec = 0 )); exit;;
1164	esac
1165	else
1166	host=$localhost
1167	fi
1168
1169
1170	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
1171	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1172	then
1173
1174	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
1175	if [[ ! -n $numprocs ]]
1176	then
1177	printf "\n"
1178	printf "\n +++ option \"-K parallel\" requires additional specification"
1179	printf "\n of the number of processors to be used by"
1180	printf "\n mrun-option \"-X\" or by environment-variable"
1181	printf "\n \"numprocs\" in the configuration file"
1182	locat=numprocs; (( iec = 0 )); exit
1183	fi
1184
1185	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
1186	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
1187	# GESAMTPROZESSORANZAHL IST
1188	if [[ "$tasks_per_node" = "" ]]
1189	then
1190	printf "\n"
1191	printf "\n +++ option \"-T\" (tasks per node) is missing"
1192	printf "\n set -T option or define tasks_per_node in the config file"
1193	locat=tasks_per_node; (( iec = 0 )); exit
1194	fi
1195	(( ival = $tasks_per_node ))
1196	(( pes = numprocs ))
1197	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1198	# then
1199	# (( pes = pes - 1 ))
1200	# fi
1201	(( ii = pes / ival ))
1202	if (( pes - ii * ival > 0 ))
1203	then
1204	printf "\n"
1205	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1206	printf "\n divisor of the total number of processors (option \"-X\")"
1207	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1208	locat=tasks_per_node; (( iec = 0 )); exit
1209	fi
1210
1211
1212	# IBMY HAT NUR EINEN KNOTEN
1213	if [[ $host = ibmy ]]
1214	then
1215	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1216	then
1217	printf "\n"
1218	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1219	printf "\n total number of processors (option \"-X\")"
1220	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1221	locat=tasks_per_node; (( iec = 0 )); exit
1222	fi
1223	fi
1224
1225
1226	# SETTINGS FOR SUBJOB-COMMAND
1227	TOPT="-T $tasks_per_node"
1228	OOPT="-O $threads_per_task"
1229
1230	# GESAMTZAHL DER KNOTEN BESTIMMEN
1231	if [[ "$tasks_per_node" != "" ]]
1232	then
1233	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1234	fi
1235
1236	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1237	# SETZEN
1238	if [[ $node_usage = default ]]
1239	then
1240	if [[ $host = ibms ]]
1241	then
1242	node_usage=shared
1243	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1244	then
1245	node_usage=singlejob
1246	else
1247	node_usage=not_shared
1248	fi
1249	fi
1250
1251	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
1252	then
1253	printf "\n"
1254	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1255	printf "\n \"shared\" or \"not_shared\""
1256	locat=tasks_per_node; (( iec = 0 )); exit
1257	fi
1258
1259	fi
1260
1261	# PRUEFEN, OB HOSTFILE EXISTIERT
1262	if [[ -n $hostfile ]]
1263	then
1264	if [[ ! -f $hostfile ]]
1265	then
1266	printf "\n"
1267	printf "\n +++ hostfile \"$hostfile\" does not exist"
1268	locat=hostfile; exit
1269	fi
1270	fi
1271
1272	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1273	if [[ $host = ibmy && $do_remote = false ]]
1274	then
1275	if [[ ! -f $HOME/.rhosts ]]
1276	then
1277	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1278	printf "\n\n *** file:"
1279	printf "\n $HOME/.rhosts"
1280	printf "\n was created\n"
1281	fi
1282	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1283	then
1284	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1285	printf "\n\n *** file:"
1286	printf "\n $HOME/.rhosts"
1287	printf "\n was extended by the name of the current host\n"
1288	fi
1289	fi
1290
1291
1292	# Set default value for the maximum number of parallel io streams
1293	if [[ "$maximum_parallel_io_streams" = "" ]]
1294	then
1295	maximum_parallel_io_streams=$numprocs
1296	fi
1297
1298
1299	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1300	if [[ $queue = none ]]
1301	then
1302	case $host in
1303	(ibmh) queue=no_class;;
1304	(ibmkisti) queue=class.32plus;;
1305	(ibmy) queue=parallel;;
1306	(lckyoto) queue=ph;;
1307	(lcsgib) queue=testq;;
1308	(lcsgih) queue=testq;;
1309	(lctit) queue=S;;
1310	(nech) queue=none;;
1311	(necriam) queue=SP;;
1312	(unics) queue=unics;;
1313	esac
1314	fi
1315
1316
1317	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1318	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1319	# ERMITTELN
1320	(( i = 0 ))
1321	while (( i < iin ))
1322	do
1323	(( i = i + 1 ))
1324	(( maxcycle = 0 ))
1325
1326	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1327	if [[ "${actionin[$i]}" = di ]]
1328	then
1329	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1330	# REM-MASCHINE AUSWERTEN
1331	eval filename=${pathin[$i]}/${endin[$i]}
1332	else
1333	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1334	# REM-MASCHINE AUSWERTEN
1335	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1336	fi
1337
1338	# PRUEFEN AUF VORHANDENSEIN
1339	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1340	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1341	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1342	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1343	then
1344	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1345	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1346	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1347	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1348	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1349	if [[ "${transin[$i]}" != "locopt" ]]
1350	then
1351	printf "\n\n +++ INPUT-file: "
1352	if [[ "${extin[$i]}" = "" ]]
1353	then
1354	printf "\n $filename"
1355	else
1356	printf "\n $filename.${extin[$i]}"
1357	fi
1358	printf "\n does not exist\n"
1359	locat=input; exit
1360	else
1361	transin[$i]="unavailable"
1362	fi
1363	else
1364
1365	# ZYKLUSNUMMER FESTSTELLEN
1366	ls -1 -d $filename > filelist 2>/dev/null
1367	ls -1 -d $filename.* >> filelist 2>/dev/null
1368	while read zeile
1369	do
1370	cycle=$(print $zeile \| cut -f2 -d".")
1371	if [[ "$cycle" = "$zeile" ]]
1372	then
1373	(( icycle = 0 ))
1374	elif [[ "$cycle" = "${extin[$i]}" ]]
1375	then
1376	(( icycle = 0 ))
1377	else
1378	(( icycle = $cycle ))
1379	fi
1380	if (( icycle > maxcycle ))
1381	then
1382	(( maxcycle = icycle ))
1383	file_to_be_used=$zeile
1384	fi
1385	done <filelist
1386	rm filelist
1387
1388	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1389	if (( maxcycle > 0 ))
1390	then
1391	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1392	then
1393	filename=${filename}.$maxcycle.${extin[$i]}
1394	else
1395	filename=${filename}.$maxcycle
1396	fi
1397	else
1398	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1399	then
1400	filename=${filename}.${extin[$i]}
1401	fi
1402	fi
1403
1404	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1405	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1406	absnamein[$i]=$filename
1407	if (( maxcycle > 0 ))
1408	then
1409	if [[ "${actionin[$i]}" = di ]]
1410	then
1411	frelin[$i]=${endin[$i]}.$maxcycle
1412	else
1413	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1414	fi
1415	else
1416	if [[ "${actionin[$i]}" = di ]]
1417	then
1418	frelin[$i]=${endin[$i]}
1419	else
1420	frelin[$i]=${afname}${endin[$i]}
1421	fi
1422	fi
1423
1424	fi
1425	done
1426
1427
1428	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1429	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1430	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1431	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1432	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1433	(( i = 0 ))
1434	while (( i < iout ))
1435	do
1436	(( i = i + 1 ))
1437	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1438	then
1439	if [[ "${actionout[$i]}" = tr ]]
1440	then
1441	actionout[$i]=""
1442	elif [[ "${actionout[$i]}" = trpe ]]
1443	then
1444	actionout[$i]=pe
1445	elif [[ "${actionout[$i]}" = tra ]]
1446	then
1447	actionout[$i]=a
1448	fi
1449	(( maxcycle = 0 ))
1450	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1451	eval catalogname=${pathout[$i]}
1452	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1453	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1454	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1455	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1456	then
1457
1458	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1459	if cat /dev/null > $filename
1460	then
1461	rm $filename
1462	else
1463
1464	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1465	if [[ ! -d $catalogname ]]
1466	then
1467	if mkdir -p $catalogname
1468	then
1469	printf "\n\n *** directory:"
1470	printf "\n $catalogname"
1471	printf "\n was created\n"
1472	else
1473	printf "\n\n +++ OUTPUT-file:"
1474	printf "\n $filename"
1475	printf "\n cannot be created, because directory does not exist"
1476	printf "\n and cannot be created either"
1477	printf "\n"
1478	locat=output ; exit
1479	fi 2>/dev/null
1480	else
1481	printf "\n\n +++ OUTPUT-file:"
1482	printf "\n $filename"
1483	printf "\n cannot be created, although directory exists"
1484	printf "\n"
1485	locat=output ; exit
1486	fi
1487	fi 2>/dev/null
1488	else
1489
1490	# ZYKLUSNUMMER FESTSTELLEN
1491	ls -1 -d $filename > filelist 2>/dev/null
1492	ls -1 -d $filename.* >> filelist 2>/dev/null
1493	while read zeile
1494	do
1495	cycle=$(print $zeile \| cut -f2 -d".")
1496	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1497	then
1498	(( icycle = 1 ))
1499	else
1500	(( icycle = $cycle + 1 ))
1501	fi
1502	if (( icycle > maxcycle ))
1503	then
1504	(( maxcycle = icycle ))
1505	fi
1506	done <filelist
1507	rm filelist
1508	fi
1509
1510	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1511	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1512	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1513	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1514	if [[ "${actionout[$i]}" != a ]]
1515	then
1516	if (( maxcycle > 0 ))
1517	then
1518	filename=${filename}.$maxcycle
1519	if cat /dev/null > $filename
1520	then
1521	rm $filename
1522	else
1523	printf "\n +++ OUTPUT-file:"
1524	printf "\n $filename"
1525	printf "\n cannot be created"
1526	locat=output ; exit
1527	fi
1528	fi
1529	else
1530	(( maxcycle = maxcycle - 1 ))
1531	if (( maxcycle > 0 ))
1532	then
1533	filename=${filename}.$maxcycle
1534	fi
1535	fi
1536
1537	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1538	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1539	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1540	pathout[$i]=$filename
1541	if (( maxcycle > 0 ))
1542	then
1543	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1544	else
1545	frelout[$i]=${fname}${endout[$i]}
1546	fi
1547
1548	fi
1549	done
1550
1551
1552	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1553	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1554	then
1555	if [[ "$dvr_inc" = "" ]]
1556	then
1557	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1558	printf "\n This is required for the dvrp_graphics package.\n"
1559	locat=dvr; exit
1560	fi
1561	if [[ "$dvr_lib" = "" ]]
1562	then
1563	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1564	printf "\n This is required for the dvrp_graphics package.\n"
1565	locat=dvr; exit
1566	fi
1567	fi
1568
1569
1570	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1571	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1572	# UEBERSETZT ZU WERDEN)
1573	if [[ "$mainprog" = "" && "$executable" = "" ]]
1574	then
1575	printf "\n +++ neither main program nor executable defined"
1576	locat=source; exit
1577	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1578	then
1579	printf "\n +++ main program as well as executable defined"
1580	locat=source; exit
1581	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1582	then
1583	do_compile=false
1584	fi
1585
1586
1587	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1588	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1589	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1590	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1591	then
1592	rm -rf SOURCES_FOR_RUN_$fname
1593	mkdir SOURCES_FOR_RUN_$fname
1594	fi
1595
1596
1597	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1598	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1599	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1600	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1601	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1602	then
1603
1604	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1605	[[ "$source_list" = WP ]] && source_list=WRITE_PERMIT
1606
1607
1608	# EVTL. ZU UEBERSETZENDE PROGRAMMTEILE DADURCH BESTIMMEN, DASS GEPRUEFT
1609	# WIRD, WELCHE DATEIEN WRITE-PERMIT BESITZEN (DATEIEN SOLLTEN DESHALB
1610	# UNTER RCS-KONTROLLE STEHEN). MIT DER VARIABLEN EXCLUDE KOENNEN
1611	# BESTIMMTE DATEIEN GRUNDSAETZLICH VON DER UEBERSETZUNG AUSGESCHLOSSEN
1612	# WERDEN. DIES IST NUR BEI MANUELLEM START VON MRUN DURCH DEN BENUTZER
1613	# MOEGLICH, DA BEI AUTOMATISCHEN RESTARTS TEST DURCH DIE TATSAECHLICH
1614	# ZU UBERSETZENDEN DATEIEN ERSETZT IST.
1615	# ALLE ERMITTELTEN DATEIEN WERDEN IM VERZEICHNIS SOURCES_FOR_RUN_...
1616	# GESAMMELT
1617	if [[ "$source_list" = WRITE_PERMIT ]]
1618	then
1619
1620	source_list=""
1621	cd $source_path
1622
1623
1624	# ALLE MOEGLICHEN QUELLCODEDATEIEN AUFLISTEN
1625	Names=$(ls -1 *.f90 2>&1)
1626	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && Filenames="$Names"
1627	Names=$(ls -1 *.F90 2>&1)
1628	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && Filenames="$Filenames $Names"
1629	Names=$(ls -1 *.F 2>&1)
1630	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && Filenames="$Filenames $Names"
1631	Names=$(ls -1 *.f 2>&1)
1632	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && Filenames="$Filenames $Names"
1633	Names=$(ls -1 *.c 2>&1)
1634	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && Filenames="$Filenames $Names"
1635
1636
1637	# DATEIEN MIT WRITE-PERMIT NACH SOURCES_FOR_RUN_... KOPIEREN
1638	for dateiname in $Filenames
1639	do
1640	if [[ -w $dateiname ]]
1641	then
1642	if [[ "$exclude" = "" \|\| $(echo $exclude \| grep -c $dateiname) = 0 ]]
1643	then
1644	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1645	source_list=$source_list"$dateiname "
1646	fi
1647	fi
1648	done
1649
1650	cd - > /dev/null
1651
1652
1653	elif [[ "$source_list" = LOCALLY_MODIFIED ]]
1654	then
1655
1656	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1657	source_list=""
1658	cd $source_path
1659
1660
1661	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1662	if [[ ! -d .svn ]]
1663	then
1664	printf "\n\n +++ source directory"
1665	printf "\n \"$source_path\" "
1666	printf "\n is not under control of \"subversion\"."
1667	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1668	fi
1669
1670
1671	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1672	Filenames=""
1673	svn status > tmp_mrun
1674	while read line
1675	do
1676	firstc=`echo $line \| cut -c1`
1677	if [[ $firstc = M \|\| $firstc = "?" ]]
1678	then
1679	Name=`echo "$line" \| cut -c8-`
1680	extension=`echo $Name \| cut -d. -f2`
1681	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1682	then
1683	Filenames="$Filenames "$Name
1684	fi
1685	fi
1686	done < tmp_mrun
1687
1688
1689	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1690	for dateiname in $Filenames
1691	do
1692	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1693	source_list=$source_list"$dateiname "
1694	done
1695
1696	cd - > /dev/null
1697
1698
1699	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1700	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1701	# VORHANDEN
1702	elif [[ "$source_list" != "" && $restart_run != true ]]
1703	then
1704
1705	cd $source_path
1706
1707	for filename in $source_list
1708	do
1709
1710	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1711	if [[ $(print $filename \| grep -c "/") != 0 ]]
1712	then
1713	printf "\n +++ source code file: $filename"
1714	printf "\n must not contain (\"/\") "
1715	locat=source; exit
1716	fi
1717
1718	if [[ ! -f $filename ]]
1719	then
1720	printf "\n +++ source code file: $filename"
1721	printf "\n does not exist"
1722	locat=source; exit
1723	else
1724	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1725	fi
1726
1727	done
1728
1729	cd - > /dev/null
1730
1731	fi
1732
1733
1734	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1735	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1736	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1737	if [[ $restart_run != true ]]
1738	then
1739
1740	if [[ ! -f "$source_path/$mainprog" ]]
1741	then
1742	printf "\n\n +++ main program: $mainprog"
1743	printf "\n does not exist in source directory"
1744	printf "\n \"$source_path\"\n"
1745	locat=source; exit
1746	else
1747	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1748	then
1749	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1750	source_list=${mainprog}" $source_list"
1751	fi
1752	fi
1753	fi
1754
1755
1756	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1757	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1758	if [[ "$restart_run" != true ]]
1759	then
1760	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1761	if [[ ! -f $makefile ]]
1762	then
1763	printf "\n +++ file \"$makefile\" does not exist"
1764	locat=make; exit
1765	else
1766	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1767	fi
1768	fi
1769
1770
1771	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1772	if [[ $restart_run != true && "$add_source_path" != "" ]]
1773	then
1774
1775	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1776	if [[ ! -d $add_source_path ]]
1777	then
1778	printf "\n\n +++ WARNING: additional source code directory"
1779	printf "\n \"$add_source_path\" "
1780	printf "\n does not exist or is not a directory."
1781	printf "\n No source code will be used from this directory!\n"
1782	add_source_path=""
1783	sleep 3
1784	else
1785
1786	cd $add_source_path
1787	found=false
1788
1789	Names=$(ls -1 *.f90 2>&1)
1790	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1791	Names=$(ls -1 *.F90 2>&1)
1792	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1793	Names=$(ls -1 *.F 2>&1)
1794	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1795	Names=$(ls -1 *.f 2>&1)
1796	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1797	Names=$(ls -1 *.c 2>&1)
1798	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1799
1800	cd - > /dev/null
1801	cd SOURCES_FOR_RUN_$fname
1802
1803	# COPY MAKEFILE IF EXISTING
1804	if [[ -f $add_source_path/Makefile ]]
1805	then
1806	printf "\n\n *** user Makefile from directory"
1807	printf "\n \"$add_source_path\" is used \n"
1808	sleep 1
1809	cp $add_source_path/Makefile .
1810	fi
1811
1812	for dateiname in $AddFilenames
1813	do
1814	if [[ -f $dateiname ]]
1815	then
1816	printf "\n +++ source code file \"$dateiname\" found in additional"
1817	printf "\n source code directory \"$add_source_path\" "
1818	printf "\n but was also given with option \"-s\" which means that it should be taken"
1819	printf "\n from directory \"$source_path\"."
1820	locat=source; exit
1821	fi
1822
1823	cp $add_source_path/$dateiname .
1824	source_list="$source_list $dateiname"
1825
1826	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1827	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1828	then
1829	printf "\n\n +++ user file \"$dateiname\" "
1830	printf "\n is not listed in Makefile \n"
1831	locat=source; exit
1832	else
1833
1834	# Default User-Interface von der Liste entfernen, falls Datei
1835	# ein User-Interface enthaelt
1836	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1837	# then
1838	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1839	# then
1840	# rm -rf user_interface.f90
1841	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1842	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1843	# printf "\n since a user-interface is found in file"
1844	# printf "\n \"$add_source_path/$dateiname\" \n"
1845	# sleep 3
1846	# else
1847	if [[ $found = false ]]
1848	then
1849	found=true
1850	printf "\n\n *** following user file(s) added to the"
1851	printf " files to be translated:\n "
1852	fi
1853	printf "$dateiname "
1854	sleep 0.5
1855	fi
1856	done
1857	[[ $found = true ]] && printf "\n"
1858	cd - > /dev/null
1859	fi
1860	fi
1861
1862
1863	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1864	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1865	if [[ $restart_run != true && -n $package_list ]]
1866	then
1867
1868	cd $source_path
1869
1870	for package in $package_list
1871	do
1872
1873	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1874
1875	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1876	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1877	# LIEFERT
1878	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1879
1880
1881	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1882	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1883	for source_list_name in $package_source_list
1884	do
1885	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1886	then
1887
1888	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1889	ending=`echo $source_list_name \| cut -f2 -d.`
1890	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1891	then
1892	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1893	source_list="$source_list $source_list_name"
1894	fi
1895	fi
1896	done
1897	done
1898
1899	cd - > /dev/null
1900	fi
1901
1902
1903	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1904	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1905	# if [[ "$restart_run" != true ]]
1906	# then
1907	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1908	# if [[ ! -f $makefile ]]
1909	# then
1910	# printf "\n +++ file \"$makefile\" does not exist"
1911	# locat=make; exit
1912	# else
1913	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1914	# fi
1915	# fi
1916
1917	fi # do_compile=true
1918
1919
1920	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1921	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1922	if [[ $do_compile = true ]]
1923	then
1924
1925	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1926	# ZUSAMMENSETZEN
1927	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1928	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1929	then
1930	cpp_options="${cpp_options},-D__ibm=__ibm"
1931	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1932	then
1933	cpp_options="$cpp_options -D__nec"
1934	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1935	then
1936	cpp_options="$cpp_options -D__lc"
1937	else
1938	cpp_options="$cpp_options -D__$localhost"
1939	fi
1940
1941	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1942	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1943	then
1944	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1945	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1946	else
1947	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1948	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1949	fi
1950
1951	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1952	if [[ -n $package_list ]]
1953	then
1954	for package in $package_list
1955	do
1956	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1957	then
1958	if [[ $package != "dvrp_graphics+1PE" ]]
1959	then
1960	cpp_options="${cpp_options},-D__$package=__$package"
1961	else
1962	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1963	export use_seperate_pe_for_dvrp_output=true
1964	fi
1965	else
1966	if [[ $package != "dvrp_graphics+1PE" ]]
1967	then
1968	cpp_options="$cpp_options -D__$package"
1969	else
1970	cpp_options="$cpp_options -D__dvrp_graphics"
1971	export use_seperate_pe_for_dvrp_output=true
1972	fi
1973	fi
1974	done
1975	fi
1976
1977	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1978	if [[ -n $cpp_opts ]]
1979	then
1980	for popts in $cpp_opts
1981	do
1982	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1983	then
1984	cpp_options="${cpp_options},-D__$popts=__$popts"
1985	else
1986	cpp_options="$cpp_options -D__$popts"
1987	fi
1988	done
1989	fi
1990
1991	else
1992
1993
1994	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1995	if [[ $do_remote = false ]]
1996	then
1997	if [[ ! -f $executable ]]
1998	then
1999	printf "\n +++ executable file: $executable"
2000	printf "\n does not exist"
2001	locat=executable; exit
2002	fi
2003	fi
2004	fi
2005
2006
2007	# JOBMODUS FESTSTELLEN
2008	if [[ "$ENVIRONMENT" = BATCH ]]
2009	then
2010	jobmo=BATCH
2011	else
2012	jobmo=INTERACTIVE
2013	fi
2014
2015
2016	# no interactive runs on lctit
2017	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
2018	then
2019	printf "\n +++ no interactive runs allowed on host \"$host\" "
2020	printf "\n please submit batch job using mrun option \"-b\" \n"
2021	locat=normal; exit
2022	fi
2023
2024
2025	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
2026	# DURCH BENUTZER ANDERWEITIG VEREINBART
2027	if [[ "$compiler_name" = "" ]]
2028	then
2029
2030	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
2031	locat=compiler_name; exit
2032
2033	fi
2034
2035
2036	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
2037	[[ $localhost = necriam ]] && compiler_name=mpif90
2038
2039
2040
2041	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
2042	kennung=$RANDOM
2043	if [[ "$tmp_user_catalog" = "" ]]
2044	then
2045	if [[ $localhost = ibmh ]]
2046	then
2047	tmp_user_catalog=$SCRATCH
2048	elif [[ $localhost = nech ]]
2049	then
2050	tmp_user_catalog=$WRKSHR
2051	else
2052	tmp_user_catalog=/tmp
2053	fi
2054	fi
2055	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
2056
2057
2058	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
2059	# BESTIMMEN
2060	if [[ "$tmp_data_catalog" = "" ]]
2061	then
2062	if [[ $localhost = nech ]]
2063	then
2064	tmp_data_catalog=$WRKSHR/mrun_restart_data
2065	else
2066	tmp_data_catalog=/tmp/mrun_restart_data
2067	fi
2068	fi
2069
2070
2071	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
2072	# ERSETZEN
2073	if [[ $do_remote = false && $do_compile = true ]]
2074	then
2075	eval fopts=\"$fopts\"
2076	eval lopts=\"$lopts\"
2077	fi
2078
2079
2080
2081	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
2082	fopts="$fopts $netcdf_inc $dvr_inc"
2083	lopts="$lopts $netcdf_lib $dvr_lib"
2084	ROPTS="$ropts"
2085	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxt4 \|\| $host = lcxt5m \|\| $host = lck \|\| $host = lckordi) && -n $numprocs ]]
2086	then
2087	XOPT="-X $numprocs"
2088	fi
2089
2090
2091
2092	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
2093	# GRAMM BENOETIGT
2094	done=false
2095	while [[ $done = false ]]
2096	do
2097	cputime=$cpumax
2098	if (( $cputime == 0 ))
2099	then
2100	if [[ $do_batch = true ]]
2101	then
2102	printf "\n +++ cpu-time is undefined"
2103	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
2104	printf "\n >>> "
2105	read cputime 1>/dev/null 2>&1
2106	else
2107	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
2108	fi
2109	else
2110	done=true
2111	fi
2112	cpumax=$cputime
2113	done
2114
2115	(( minuten = cputime / 60 ))
2116	(( sekunden = cputime - minuten * 60 ))
2117
2118
2119	# PRUEFEN DER KERNSPEICHERANFORDERUNG
2120	if [[ $do_batch = true ]]
2121	then
2122	done=false
2123	while [[ $done = false ]]
2124	do
2125	if (( memory == 0 ))
2126	then
2127	printf "\n +++ memory demand is undefined"
2128	printf "\n >>> Please type memory in MByte per process as INTEGER:"
2129	printf "\n >>> "
2130	read memory 1>/dev/null 2>&1
2131	else
2132	done=true
2133	fi
2134	done
2135	fi
2136
2137
2138	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
2139	if [[ $do_remote = true && -z $remote_username ]]
2140	then
2141	while [[ -z $remote_username ]]
2142	do
2143	printf "\n +++ username on remote host \"$host\" is undefined"
2144	printf "\n >>> Please type username:"
2145	printf "\n >>> "
2146	read remote_username
2147	done
2148	mc="$mc -u$remote_username"
2149	fi
2150
2151
2152	# set module load command and export for subjob
2153	if [[ "$modules" != "" ]]
2154	then
2155	if [[ $host = lctit ]]
2156	then
2157	export module_calls=". $modules"
2158	else
2159	export module_calls="module load ${modules};"
2160	fi
2161	fi
2162
2163	# bugfix for wrong netcdf module and for netCDF4 usage in case of mpt
2164	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2165	then
2166	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
2167	then
2168	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
2169	fi
2170	# if [[ $(echo $module_calls \| grep -c mpt) != 0 ]]
2171	# then
2172	# export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/sgi/mpt/2011-02-07/lib:\$LD_LIBRARY_PATH;"
2173	# echo "*** module_calls = $module_calls"
2174	# fi
2175	fi
2176
2177
2178	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
2179	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2180	then
2181	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
2182	then
2183	mpilib=mpt
2184	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
2185	then
2186	mpilib=mvapich
2187	elif [[ $(echo $modules \| grep -c impi ) != 0 ]]
2188	then
2189	mpilib=impi
2190	fi
2191	fi
2192
2193
2194
2195	###########################################################################
2196	# HEADER-AUSGABE
2197	###########################################################################
2198
2199
2200	calltime=$(date)
2201	printf "\n"
2202	# [[ $silent = false ]] && clear
2203	printf "#--------------------------------------------------------------# \n"
2204	printf "\| $version$calltime \| \n"
2205	printf "\| \| \n"
2206	spalte1="called on:"; spalte2=$localhost_realname
2207	printf "\| $spalte1$spalte2 \| \n"
2208	if [[ $local_compile = false ]]
2209	then
2210	if [[ $do_remote = true ]]
2211	then
2212	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2213	else
2214	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2215	fi
2216	else
2217	spalte1="compiling test only!"; spalte2=""
2218	fi
2219	printf "\| $spalte1$spalte2 \| \n"
2220	if [[ -n $numprocs ]]
2221	then
2222	spalte1="number of PEs:"; spalte2=$numprocs
2223	printf "\| $spalte1$spalte2 \| \n"
2224	fi
2225	if [[ -n $tasks_per_node ]]
2226	then
2227	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2228	printf "\| $spalte1$spalte2 \| \n"
2229	fi
2230	if [[ $maximum_parallel_io_streams != $numprocs ]]
2231	then
2232	spalte1="max par io streams:"; spalte2="$maximum_parallel_io_streams"
2233	printf "\| $spalte1$spalte2 \| \n"
2234	fi
2235	if [[ $use_openmp = true ]]
2236	then
2237	spalte1="threads per task:"; spalte2="$threads_per_task"
2238	printf "\| $spalte1$spalte2 \| \n"
2239	fi
2240	printf "\| \| \n"
2241	if [[ $do_compile = true ]]
2242	then
2243	if [[ "$mopts" != "" ]]
2244	then
2245	spalte1="make options:"; spalte2=$mopts
2246	printf "\| $spalte1$spalte2 \| \n"
2247	zeile=$(echo "$mopts" \| cut -c41-)
2248	while [[ "$zeile" != "" ]]
2249	do
2250	spalte1=""
2251	spalte2=$zeile
2252	printf "\| $spalte1$spalte2 \| \n"
2253	zeile=$(echo "$zeile" \| cut -c41-)
2254	done
2255	fi
2256
2257	spalte1="cpp directives:"; spalte2=$cpp_options
2258	printf "\| $spalte1$spalte2 \| \n"
2259	zeile=$(echo "$cpp_options" \| cut -c41-)
2260	while [[ "$zeile" != "" ]]
2261	do
2262	spalte1=""
2263	spalte2=$zeile
2264	printf "\| $spalte1$spalte2 \| \n"
2265	zeile=$(echo "$zeile" \| cut -c41-)
2266	done
2267
2268	spalte1="compiler options:"; spalte2="$fopts"
2269	printf "\| $spalte1$spalte2 \| \n"
2270	zeile=$(echo "$fopts" \| cut -c41-)
2271	while [[ "$zeile" != "" ]]
2272	do
2273	spalte1=""
2274	spalte2=$zeile
2275	printf "\| $spalte1$spalte2 \| \n"
2276	zeile=$(echo "$zeile" \| cut -c41-)
2277	done
2278
2279	spalte1="linker options:"; spalte2=$lopts
2280	printf "\| $spalte1$spalte2 \| \n"
2281	zeile=$(echo "$lopts" \| cut -c41-)
2282	while [[ "$zeile" != "" ]]
2283	do
2284	spalte1=""
2285	spalte2=$zeile
2286	printf "\| $spalte1$spalte2 \| \n"
2287	zeile=$(echo "$zeile" \| cut -c41-)
2288	done
2289
2290	spalte1="modules to be load:"; spalte2=$modules
2291	printf "\| $spalte1$spalte2 \| \n"
2292	zeile=$(echo "$modules" \| cut -c41-)
2293	while [[ "$zeile" != "" ]]
2294	do
2295	spalte1=""
2296	spalte2=$zeile
2297	printf "\| $spalte1$spalte2 \| \n"
2298	zeile=$(echo "$zeile" \| cut -c41-)
2299	done
2300
2301	spalte1="main program":; spalte2=$mainprog
2302	printf "\| $spalte1$spalte2 \| \n"
2303	else
2304	spalte1=executable:; spalte2=$executable
2305	printf "\| $spalte1$spalte2 \| \n"
2306	fi
2307	printf "\| \| \n"
2308	spalte1="base name of files":; spalte2=$fname
2309	printf "\| $spalte1$spalte2 \| \n"
2310	if [[ $fname != $afname ]]
2311	then
2312	spalte1="base name of input files":; spalte2=$afname
2313	printf "\| $spalte1$spalte2 \| \n"
2314	fi
2315	spalte1="INPUT control list":; spalte2=$input_list
2316	printf "\| $spalte1$spalte2 \| \n"
2317	spalte1="OUTPUT control list":; spalte2=$output_list
2318	printf "\| $spalte1$spalte2 \| \n"
2319
2320	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2321	then
2322	spalte1="memory demand / PE":; spalte2="$memory MB"
2323	printf "\| $spalte1$spalte2 \| \n"
2324	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2325	printf "\| $spalte1$spalte2 \| \n"
2326	fi
2327
2328	if [[ $do_compile = true ]]
2329	then
2330	printf "\| \| \n"
2331	printf "\| Files to be compiled: \| \n"
2332	zeile=$source_list
2333	while [[ "$zeile" != "" ]]
2334	do
2335	spalte3=$zeile
2336	printf "\| $spalte3 \| \n"
2337	zeile=$(echo "$zeile" \| cut -c61-)
2338	done
2339	fi
2340	printf "#--------------------------------------------------------------#"
2341
2342
2343
2344	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2345	if [[ $do_trace = true ]]
2346	then
2347	(( i = 0 ))
2348	while (( i < iin ))
2349	do
2350	(( i = i + 1 ))
2351	if (( i == 1 ))
2352	then
2353	printf "\n\n >>> INPUT-file assignments:\n"
2354	fi
2355	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2356	done
2357	(( i = 0 ))
2358	while (( i < iout ))
2359	do
2360	(( i = i + 1 ))
2361	if (( i == 1 ))
2362	then
2363	printf "\n\n >>> OUTPUT-file assignments:\n"
2364	fi
2365	printf "\n ${localout[$i]} : ${pathout[$i]}"
2366	done
2367	(( i = 0 ))
2368	while (( i < iic ))
2369	do
2370	(( i = i + 1 ))
2371	if (( i == 1 ))
2372	then
2373	printf "\n\n >>> INPUT-commands:\n"
2374	fi
2375	printf "\n ${in_command[$i]}"
2376	done
2377	(( i = 0 ))
2378	while (( i < ioc ))
2379	do
2380	(( i = i + 1 ))
2381	if (( i == 1 ))
2382	then
2383	printf "\n\n >>> OUTPUT-commands:\n"
2384	fi
2385	printf "\n ${out_command[$i]}"
2386	done
2387	fi
2388
2389
2390	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2391	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2392	then
2393	antwort=dummy
2394	printf "\n\n"
2395	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2396	do
2397	printf " >>> everything o.k. (y/n) ? "
2398	read antwort
2399	done
2400	if [[ $antwort = n \|\| $antwort = N ]]
2401	then
2402	locat=user_abort; (( iec = 0 )); exit
2403	fi
2404	if [[ $do_batch = true ]]
2405	then
2406	printf " >>> batch-job will be created and submitted"
2407	else
2408	if [[ $local_compile = false ]]
2409	then
2410	printf " >>> MRUN will now continue to execute on this machine"
2411	else
2412	printf " >>> a test compilation will now be carried out on this machine"
2413	fi
2414	fi
2415	fi
2416
2417	#### PERFORM PARAMETER FILE CHECK (COUPLED RUNS ARE NOT SUPPORTED YET)
2418	skip_check=false
2419	if [[ $check_namelist_files == false \|\| $fromhost != $localhost \|\| $run_coupled_model == true \|\| $restart_run == true ]]
2420	then
2421	skip_check=true
2422	fi
2423	if [[ $skip_check == false ]]
2424	then
2425	if [[ $ocean_file_appendix == true ]]
2426	then
2427	d3par_string="d3o#"
2428	d3fpar_string="d3of"
2429	else
2430	d3par_string="d3#"
2431	d3fpar_string="d3f"
2432	fi
2433
2434	tmp_check=${working_directory}/tmp_check
2435
2436	# GET PARAMETER FILE SUFFIX (USUALLY "_P3D")
2437	line=""
2438	found=false
2439	grep "$d3par_string" $config_file \| grep "PARIN" > $tmp_check
2440	while read line1
2441	do
2442	line="$line1"
2443	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2444	then
2445	# EVENTUELLE DOPPELPUNKTE AUS OPTIONSSTRING ENTFERNEN
2446	p3d_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2447	found=true
2448	fi
2449	done < $tmp_check
2450
2451	if [[ $found = false ]]
2452	then
2453	printf "\n +++ no PARIN list entry found for $d3par_string in the configuration file."
2454
2455	locat=check_namelist; exit
2456	fi
2457
2458	# GET RESTART PARAMETER FILE SUFFIX (USUALLY "_P3DF"). THIS FILE MIGHT IS
2459	# NOT NECESSARILY REQUIRED
2460	line=""
2461	found=false
2462	grep "d3f" $config_file \| grep "PARIN" > $tmp_check
2463	while read line1
2464	do
2465	line="$line1"
2466	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2467	then
2468	p3df_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2469	found=true
2470	fi
2471	done < $tmp_check
2472
2473	if [[ $found = false ]]
2474	then
2475	printf "\n +++ no PARIN list entry found for d3f in the configuration file."
2476	fi
2477	# GET TOPOGRAPHY PARAMETER FILE SUFFIX (USUALLY "_P3DF"). THIS FILE MIGHT IS
2478	# NOT NECESSARILY REQUIRED
2479	line=""
2480	found=false
2481	grep "d3f" $config_file \| grep "TOPOGRAPHY_DATA" > $tmp_check
2482	while read line1
2483	do
2484	line="$line1"
2485	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2486	then
2487	topo_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2488	found=true
2489	fi
2490	done < $tmp_check
2491
2492	if [[ $found = false ]]
2493	then
2494	printf "\n +++ no TOPOGRAPHY list entry found in the configuration file."
2495	fi
2496
2497	rm -rf ${working_directory}/tmp_check
2498
2499	# DEFINE VARIABLES FOR FREQUENTLY USED DIRECTORIES
2500	check_depository="${working_directory}/trunk/UTIL"
2501	check_sources="${working_directory}/tmp_check_namelist_files"
2502
2503	# CHECK IF THE A P3DF FILE MUST BE CHECKED
2504	for item in $input_list
2505	do
2506	if [[ "$item" == "restart" \|\| "$item" == d3f \|\| "$item" == d3of ]]
2507	then
2508	check_restart=1
2509	else
2510	check_restart=0
2511	fi
2512	done
2513
2514	# ERROR IF NO PARAMETER FILE WAS FOUND, OTHERWISE PROCEED
2515	if [[ ! -f $working_directory/JOBS/$fname/INPUT/${fname}${p3d_suffix} ]]
2516	then
2517	printf "\n\n +++ ERROR: parameter file (${fname}${p3d_suffix}) not found."
2518	locat=check_namelist; exit
2519	fi
2520
2521	# CHECK IF THE RESTART PARAMETER FILE EXISTS (IF NECESSARY)
2522	if [[ $check_restart == 1 ]]
2523	then
2524	if [[ ! -f $working_directory/JOBS/$fname/INPUT/${fname}${p3df_suffix} ]]
2525	then
2526	printf "\n\n +++ WARNING: restart parameter file (${fname}${p3df_suffix}) is missing."
2527	check_restart=0
2528	answer=dummy
2529	printf "\n\n"
2530
2531	if [[ $silent == false ]]
2532	then
2533	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2534	do
2535	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2536	read answer
2537	done
2538	if [[ $answer = a \|\| $answer = A ]]
2539	then
2540	printf "\n +++ Aborting...."
2541	locat=normal; exit
2542	fi
2543	fi
2544	else
2545	check_restart=1
2546	fi
2547	fi
2548
2549	# CREATE TEMPORARY SOURCES_FOR_CHECK PATH
2550	mkdir $check_sources
2551	cd $check_sources
2552
2553	# CHECK FOR USER CODE, OTHERWISE USE THE PRECOMPILED CHECK_NAMELIST_FILES.X
2554	if [[ -d $working_directory/USER_CODE/$fname ]]
2555	then
2556	printf "\n\n *** copying files from $check_depository"
2557	cp $check_depository/check_namelist_files.tar ./
2558
2559	printf "\n\n *** untar of makefile and source files in $check_sources"
2560	tar -xf check_namelist_files.tar > /dev/null 2>&1
2561
2562	printf "\n\n *** adding user code."
2563	cp $working_directory/USER_CODE/$fname/* ./
2564	touch check_namelist_files.f90
2565
2566	# GET COMPILER OPTIONS AND PERFORM MAKE
2567	printf "\n\n *** compiling code if necessary...\n"
2568	copts_check="-cpp -D_parallel -D__check"
2569	make -f Makefile_check F90=$compiler_name_ser COPT="$copts_check"
2570
2571	# GET MAKE OUTPUT
2572	if [[ $? != 0 ]]
2573	then
2574	printf "\n +++ error during make."
2575	answer=dummy
2576	printf "\n\n"
2577	if [[ $silent == false ]]
2578	then
2579	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2580	do
2581	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2582	read answer
2583	done
2584	if [[ $answer = a \|\| $answer = A ]]
2585	then
2586	printf "\n +++ Aborting..."
2587	rm -rf $check_sources
2588	locat=normal; exit
2589	else
2590	skip_check=true
2591	fi
2592	else
2593	skip_check=true
2594	fi
2595	fi
2596	else
2597	cp $PALM_BIN/check_namelist_files.x ./
2598	fi
2599
2600	cp $working_directory/JOBS/$fname/INPUT/${fname}${p3d_suffix} ./PARIN
2601	if [[ $check_restart == 1 ]]
2602	then
2603	cp $working_directory/JOBS/$fname/INPUT/${fname}${p3df_suffix} ./PARINF
2604	fi
2605
2606
2607	if [[ -f $working_directory/JOBS/$fname/INPUT/${fname}${topo_suffix} && $skip_check == false ]]
2608	then
2609	printf "\n *** adding topography data"
2610	cp $working_directory/JOBS/$fname/INPUT/${fname}${topo_suffix} ./TOPOGRAPHY_DATA
2611
2612	# IN CASE OF TOPOGRAPHY AND HIGH GRID POINT NUMBERS, THE STACK SIZE
2613	# MUST BE INCREASED. THIS IS DUE TO THE ARRAY nzb_local AND topo_height,
2614	# WHICH REQUIRE SUFFICIENT MEMORY
2615	ulimit -s unlimited
2616	fi
2617
2618	# CREATE ENVPAR FILE, WHICH IS NEEDED BY CHECK_NAMELIST_FILES.X
2619	cat > ENVPAR << %%END%%
2620	&envpar run_identifier = '$fname', host = '$host',
2621	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2622	maximum_parallel_io_streams = $maximum_parallel_io_streams,
2623	maximum_cpu_time_allowed = ${cpumax}.,
2624	revision = '$global_revision',
2625	local_dvrserver_running = $local_dvrserver_running /
2626
2627	%%END%%
2628
2629	# SAFETY CHECK: ONLY PROCEED IF THE PARAMETER CHECK PROGRAM WAS PROPERLY COMPILED
2630	if [[ ! -f check_namelist_files.x && $skip_check == false ]] then
2631	printf "\n +++ WARNING: check_namelist_files.x not found."
2632	answer=dummy
2633	printf "\n\n"
2634
2635	if [[ $silent == false ]]
2636	then
2637	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2638	do
2639	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2640	read answer
2641	done
2642	if [[ $answer = a \|\| $answer = A ]]
2643	then
2644	printf "\n +++ Aborting..."
2645	rm -rf $check_sources
2646	locat=normal; exit
2647	else
2648	printf "\n *** Skipping parameter file check."
2649
2650	fi
2651	fi
2652
2653	elif [[ $skip_check == false ]]
2654	then
2655	# STARTING THE PARAMETER FILE CHECK
2656	printf "\n\n *** starting parameter file check..."
2657
2658	# CHECKING THE P3D FILE
2659	printf "\n\n (1) checking $fname$p3d_suffix"
2660	echo "$numprocs 0" > VARIN
2661	errors=`./check_namelist_files.x < VARIN 2>&1`
2662
2663	check_error=false
2664	if [[ "$errors" == "" ]]
2665	then
2666	printf " --> o.k."
2667	else
2668	printf " --> failed."
2669	check_error=true
2670	printf "\n\n $errors"
2671	fi
2672
2673	# CHECKING THE PD3F FILE IF NECESSARY
2674	if [[ $check_restart == 1 && $check_error == false ]]
2675	then
2676	printf "\n\n (2) checking $fname$p3df_suffix"
2677
2678	# FIRST CHECK IF INITIALIZING_ACTIONS="READ_RESTART_DATA" IS SET IN &INIPAR LIST
2679	found=false
2680	cat PARINF\|while read line
2681	do
2682	line=$(echo $line\|sed 's/ //g')
2683	if [[ $line == "&inipar" ]]
2684	then
2685	start_search=true
2686	fi
2687
2688	if [[ $start_search == true ]]
2689	then
2690	if [[ $line == "initializing_actions='read_restart_data'" ]]
2691	then
2692	found=true
2693	break
2694	fi
2695	fi
2696
2697	if [[ $line == "/" ]]
2698	then
2699	start_search=false
2700	fi
2701
2702	done
2703
2704	if [[ $found = false ]]
2705	then
2706	printf "\n\n +++ ERROR: initializing_actions = 'read_restart_data' not found"
2707	printf "\n in &inipar list in $fname$p3df_suffix."
2708	rm -rf $check_sources
2709	locat=check_namelist; exit
2710	fi
2711
2712	echo "$numprocs 1" > VARIN
2713	errors=`./check_namelist_files.x < VARIN 2>&1`
2714
2715	if [[ "$errors" == "" ]]
2716	then
2717	printf " --> o.k."
2718	else
2719	printf " --> failed."
2720	check_error=true
2721	printf "\n\n $errors"
2722	fi
2723	fi
2724
2725	# REPORT ERRORS AND CONTINUE/EXIT
2726	if [[ $check_error == true ]]
2727	then
2728	printf "\n +++ errors found in the parameter file!\n"
2729	answer=dummy
2730	printf "\n\n"
2731
2732	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2733	do
2734	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2735	read answer
2736	done
2737
2738	if [[ $answer = a \|\| $answer = A ]]
2739	then
2740	printf "\n +++ Aborting..."
2741	rm -rf $check_sources
2742	locat=normal; exit
2743	fi
2744	else
2745	printf "\n\n *** parameter file(s) seem(s) to be o.k.\n"
2746	fi
2747	rm -rf $check_sources
2748	fi
2749	else
2750	printf "\n\n +++ skipping parameter file check\n"
2751	fi
2752
2753	# DELETE TEMPORARY DIRECTORY AND FINISH NAMELIST FILE CHECK
2754	rm -rf $check_sources
2755	cd $working_directory
2756
2757	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2758	# CHENDE AKTIONEN DURCHGEFUEHRT
2759	if [[ $do_batch = false ]]
2760	then
2761
2762
2763	# TEMPORAEREN KATALOG ERZEUGEN
2764	mkdir -p $TEMPDIR
2765	chmod go+rx $TEMPDIR
2766	tmpcreate=true
2767
2768	# set striping on lustre file system
2769	# if [[ $localhost = lcsgih ]]
2770	# then
2771	# lfs setstripe -s 8192k -c 16 $TEMPDIR
2772	# lfs getstripe $TEMPDIR
2773	# fi
2774
2775
2776	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2777	# TEMPORAERES VERZEICHNIS KOPIEREN
2778	if [[ $do_compile = true ]]
2779	then
2780
2781	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2782	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2783	if [[ $localhost = nech ]]
2784	then
2785	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2786	if mkdir -p $TEMPDIR_COMPILE
2787	then
2788	printf "\n *** \"$TEMPDIR_COMPILE\" "
2789	printf "\n is generated as temporary directory for cross compiling\n"
2790	else
2791	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2792	printf "\n needed for cross compilation failed"
2793	locat=compile
2794	exit
2795	fi
2796	else
2797	TEMPDIR_COMPILE=$TEMPDIR
2798	fi
2799
2800
2801	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2802	line=""
2803	grep "%depository_path" $config_file > tmp_mrun
2804	while read line
2805	do
2806	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2807	then
2808	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2809	then
2810	global_depository_path=`echo $line \| cut -d" " -s -f2`
2811	fi
2812	fi
2813	done < tmp_mrun
2814
2815	line=""
2816	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2817	while read line
2818	do
2819	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2820	then
2821	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2822	then
2823	local_depository_path=`echo $line \| cut -d" " -s -f2`
2824	fi
2825	fi
2826	done < tmp_mrun
2827
2828	if [[ "$local_depository_path" = "" ]]
2829	then
2830	if [[ "$global_depository_path" != "" ]]
2831	then
2832	local_depository_path=$global_depository_path
2833	else
2834	printf "\n\n +++ no depository path found in configuration file"
2835	printf "\n for local host \"$localhost\" "
2836	printf "\n please set \"\%depository_path\" in configuration file\n"
2837	locat=config_file; exit
2838	fi
2839	fi
2840	eval local_depository_path=$local_depository_path
2841	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2842	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2843
2844
2845	basename=`print $mainprog \| cut -f1 -d"."`
2846	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2847	if [[ ! -f $make_depository ]]
2848	then
2849	printf "\n"
2850	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2851	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2852	else
2853	cp $make_depository $TEMPDIR_COMPILE
2854	cd $TEMPDIR_COMPILE
2855	tar -xf $make_depository > /dev/null 2>&1
2856	cd - > /dev/null
2857	fi
2858
2859	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2860
2861	else
2862
2863	cp $executable ${TEMPDIR}/a.out
2864
2865	fi
2866
2867
2868	# WECHSEL IN TEMPORAEREN KATALOG
2869	cd $TEMPDIR
2870	printf "\n *** changed to temporary directory: $TEMPDIR"
2871
2872
2873	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2874	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2875	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2876	# ERMITTELN
2877	(( i = 0 ))
2878	while (( i < iout ))
2879	do
2880	(( i = i + 1 ))
2881	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2882	then
2883	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2884	else
2885	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2886	fi
2887	done
2888
2889
2890	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2891	if [[ $do_compile = true ]]
2892	then
2893
2894
2895	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2896	printf "\n\n\n *** compilation starts \n$striche\n"
2897	printf " *** compilation with make using following options:\n"
2898	printf " make depository: $make_depository"
2899	if [[ "$mopts" != "" ]]
2900	then
2901	printf " make options: $mopts\n"
2902	fi
2903	printf " compilername: $compiler_name\n"
2904	printf " compiler options: $fopts\n"
2905	printf " preprocessor directives: $cpp_options \n"
2906	printf " linker options: $lopts \n"
2907	if [[ "$modules" != "" ]]
2908	then
2909	printf " modules to be load: $modules \n"
2910	fi
2911	printf " source code files: $source_list \n"
2912
2913	if [[ $localhost = nech ]]
2914	then
2915	ssh 136.172.44.192 -l $usern ". /SX/opt/etc/initsx.sh; $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2916	cp $TEMPDIR_COMPILE/a.out .
2917	[[ $? != 0 ]] && compile_error=true
2918	rm -rf $TEMPDIR_COMPILE
2919	elif [[ $localhost = ibmh ]]
2920	then
2921	printf " compiler is called via ssh on \"plogin1\" \n"
2922	ssh plogin1 -l $usern "export PATH=/sw/ibm/xlf/12.1.0.3/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2923	[[ ! -f a.out ]] && compile_error=true
2924	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2925	elif [[ $localhost = lcsgib ]]
2926	then
2927	printf " compiler is called via ssh on \"bicegate0\" \n"
2928	ssh bicegate0 -l $usern ". /usr/share/modules/init/bash; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2929	[[ ! -f a.out ]] && compile_error=true
2930	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2931	elif [[ $localhost = lcsgih ]]
2932	then
2933	printf " compiler is called via ssh on \"hicegate0\" \n"
2934	ssh hicegate0 -l $usern ". /usr/share/modules/init/bash; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2935	[[ ! -f a.out ]] && compile_error=true
2936	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2937	elif [[ $localhost = lcflow ]]
2938	then
2939	printf " compiler is called via ssh on \"flow\" \n"
2940	ssh flow02.hpc.uni-oldenburg.de -l $usern ". /cm/local/apps/environment-modules/3.2.6/Modules/3.2.6/init/bash; echo $MODULEPATH; echo $MODULESHOME; MODULEPATH=/cm/shared/modulefiles/; module load netcdf/intel/64/4.1.3 intel/ics/64/2011.0.013 intel/impi/64/4.0.1.007 hdf5/intel/64/1.8.7; cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2941	[[ ! -f a.out ]] && compile_error=true
2942	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2943	else
2944	[[ $localhost = lcxt4 ]] && . /opt/modules/default/init/ksh
2945	[[ "$module_calls" != "" ]] && eval $module_calls
2946	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2947
2948	fi
2949
2950	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2951	then
2952	printf "\n +++ error occured while compiling or linking"
2953	locat=compile
2954
2955	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
2956	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
2957	# then
2958	exit
2959	# else
2960	# locat=normal
2961	# fi
2962	else
2963	printf "$striche\n *** compilation finished \n"
2964	fi
2965	fi
2966
2967
2968	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2969	if [[ $local_compile = true ]]
2970	then
2971	cd $HOME
2972	rm -rf $TEMPDIR
2973	locat=local_compile; exit
2974	fi
2975
2976
2977	# BEREITSTELLEN DER INPUT-DATEIEN
2978	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2979	(( i = 0 ))
2980	while (( i < iin ))
2981	do
2982	(( i = i + 1 ))
2983	if (( i == 1 ))
2984	then
2985	printf "\n\n *** providing INPUT-files:\n$striche"
2986	fi
2987
2988
2989	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2990	if [[ "${transin[$i]}" = unavailable ]]
2991	then
2992	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2993	then
2994	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2995	printf "\n is not available!"
2996	else
2997	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2998	printf "\n is not available!"
2999	fi
3000	continue
3001	fi
3002
3003	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3004	files_for_pes=false; datentyp=file
3005	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
3006	then
3007	files_for_pes=true; datentyp=directory
3008	actionin[$i]=""
3009	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
3010	then
3011	actionin[$i]=""
3012	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
3013	then
3014	files_for_pes=true; datentyp=directory
3015	actionin[$i]="ar"
3016	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
3017	then
3018	actionin[$i]="ar"
3019	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
3020	then
3021	files_for_pes=true; datentyp=directory
3022	actionin[$i]="fl"
3023	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
3024	then
3025	actionin[$i]="fl"
3026	fi
3027
3028	if [[ $files_for_pes = true ]]
3029	then
3030	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
3031	else
3032	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
3033	fi
3034
3035	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
3036	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
3037	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
3038	# SERVER ZU HOLEN
3039	if [[ "${actionin[$i]}" = fl ]]
3040	then
3041	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
3042	if [[ $files_for_pes = false ]]
3043	then
3044	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
3045	then
3046	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
3047	got_tmp[$i]=true
3048	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
3049	then
3050	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
3051	printf "\n *** trying to use backup copy in \"$WORK\" "
3052	cp $WORK/${frelin[$i]} ${localin[$i]}
3053	else
3054	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
3055	printf "\n or \"$tmp_data_catalog\" does not exist!"
3056	printf "\n *** trying to get copy from archive"
3057	actionin[$i]=ar
3058	fi
3059	else
3060	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
3061	then
3062	mkdir ${localin[$i]}
3063	cd $tmp_data_catalog/${frelin[$i]}
3064	for file in $(ls *)
3065	do
3066	ln $file $TEMPDIR/${localin[$i]}
3067	done
3068	cd $TEMPDIR
3069	got_tmp[$i]=true
3070	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
3071	then
3072	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
3073	printf "\n *** trying to use backup copy in \"$WORK\" "
3074	cp -r $WORK/${frelin[$i]} ${localin[$i]}
3075	else
3076	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
3077	printf "\n or \"$tmp_data_catalog\" does not exist!"
3078	printf "\n *** trying to get copy from archive"
3079	actionin[$i]=ar
3080	fi
3081	fi
3082	fi
3083
3084
3085	# DATEI LIEGT AUF ARCHIV-SERVER
3086	if [[ "${actionin[$i]}" = ar ]]
3087	then
3088
3089	if [[ $files_for_pes = false ]]
3090	then
3091	printf "\n file will be restored from archive-system ($archive_system)!"
3092	else
3093	printf "\n directory will be restored from archive-system ($archive_system)!"
3094	fi
3095
3096	file_restored=false
3097
3098	if [[ $archive_system = asterix ]]
3099	then
3100	do_stagein=true
3101	(( stagein_anz = 0 ))
3102	while [[ $do_stagein = true ]]
3103	do
3104	if [[ $files_for_pes = false ]]
3105	then
3106	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
3107	else
3108	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
3109	fi
3110	cat STAGEIN_OUTPUT
3111	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
3112	then
3113	file_restored=true
3114	do_stagein=false
3115	else
3116	(( stagein_anz = stagein_anz + 1 ))
3117	if (( stagein_anz == 10 ))
3118	then
3119	printf "\n +++ stagein stoped after 10 tries"
3120	locat=stage
3121	exit
3122	fi
3123	printf "\n +++ restoring from archive failed, trying again:"
3124	sleep 900
3125	fi
3126	done
3127	elif [[ $archive_system = DMF ]]
3128	then
3129	if [[ $files_for_pes = false ]]
3130	then
3131	printf "\n +++ restoring of single files impossible with $archive_system !\n"
3132	locat=DMF
3133	exit
3134	else
3135	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
3136	cp -r $ARCHIVE/${frelin[$i]} $PWD
3137	file_restored=true
3138	fi
3139	elif [[ $archive_system = tivoli ]]
3140	then
3141	if [[ $files_for_pes = false ]]
3142	then
3143	if [[ $localhost = lcsgih ]]
3144	then
3145	ssh $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3146	else
3147	ssh $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3148	fi
3149	else
3150	(( inode = 0 ))
3151	while (( inode < nodes ))
3152	do
3153	if [[ $localhost = lcsgih ]]
3154	then
3155	ssh $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3156	else
3157	ssh $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3158	fi
3159	(( inode = inode + 1 ))
3160	done
3161	fi
3162	file_restored=true
3163	elif [[ $archive_system = ut ]]
3164	then
3165	if [[ $files_for_pes = false ]]
3166	then
3167	cp $UT/${frelin[$i]} .
3168	else
3169	(( inode = 0 ))
3170	while (( inode < nodes ))
3171	do
3172	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
3173	(( inode = inode + 1 ))
3174	done
3175	fi
3176	file_restored=true
3177	else
3178	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
3179	locat=rearchive
3180	exit
3181	fi
3182
3183	if [[ $file_restored = true ]]
3184	then
3185
3186	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
3187	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
3188	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
3189	if [[ $files_for_pes = false ]]
3190	then
3191	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
3192	else
3193	mkdir $tmp_data_catalog/${frelin[$i]}
3194	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
3195	fi
3196	got_tmp[$i]=true
3197
3198	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
3199	mv ${frelin[$i]} ${localin[$i]}
3200
3201	fi
3202	fi
3203
3204
3205	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
3206	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
3207	then
3208
3209	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
3210	then
3211
3212	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
3213	printf "\n file will be provided for $numprocs processors"
3214	mkdir ${localin[$i]}
3215	ival=$numprocs
3216	(( ii = 0 ))
3217	while (( ii <= ival-1 ))
3218	do
3219	if (( ii < 10 ))
3220	then
3221	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
3222	elif (( ii < 100 ))
3223	then
3224	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
3225	elif (( ii < 1000 ))
3226	then
3227	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
3228	else
3229	cp ${absnamein[$i]} ${localin[$i]}/_$ii
3230	fi
3231	(( ii = ii + 1 ))
3232	done
3233
3234	else
3235
3236	if [[ $files_for_pes = true ]]
3237	then
3238
3239	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
3240	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
3241	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
3242	# PER MOVE UMBENANNT WERDEN
3243	printf "\n providing $numprocs files for the respective processors"
3244	mkdir ${localin[$i]}
3245	if [[ $link_local_input = true ]]
3246	then
3247	printf " using ln -f\n"
3248	cd ${absnamein[$i]}
3249	for file in $(ls *)
3250	do
3251	ln -f $file ${localin[$i]}
3252	done
3253	cd $TEMPDIR
3254	fi
3255	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
3256	if [[ ! -f "${localin[$i]}/_0000" ]]
3257	then
3258	if [[ $link_local_input = true ]]
3259	then
3260	printf " ln failed for .../_0000, using cp...\n"
3261	fi
3262	cp -r ${absnamein[$i]}/* ${localin[$i]}
3263	fi
3264
3265	else
3266	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
3267	if [[ $link_local_input = true ]]
3268	then
3269	printf " using ln -f\n"
3270	ln -f ${absnamein[$i]} ${localin[$i]}
3271	fi
3272	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
3273	if [[ ! -f "${localin[$i]}" ]]
3274	then
3275	if [[ $link_local_input = true ]]
3276	then
3277	printf " ln failed, using cp...\n"
3278	fi
3279	cp ${absnamein[$i]} ${localin[$i]}
3280	fi
3281	fi
3282	fi
3283	fi
3284
3285	done
3286	if (( i != 0 ))
3287	then
3288	printf "\n$striche\n *** all INPUT-files provided \n"
3289	fi
3290
3291
3292	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
3293	(( i = 0 ))
3294	while (( i < iic ))
3295	do
3296	(( i = i + 1 ))
3297	if (( i == 1 ))
3298	then
3299	printf "\n\n *** execution of INPUT-commands:\n$striche"
3300	fi
3301	printf "\n >>> ${in_command[$i]}"
3302	eval ${in_command[$i]}
3303	if (( i == iic ))
3304	then
3305	printf "\n$striche\n"
3306	fi
3307	done
3308
3309
3310	# VERBLEIBENDE CPU-ZEIT BERECHNEN
3311	cpurest=${cpumax}.
3312
3313
3314	# START DVR STREAMING SERVER
3315	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3316	then
3317	if [[ "$dvr_server" != "" ]]
3318	then
3319
3320	printf "\n\n *** preparing the dvr streaming server configuration file"
3321
3322	# Check, if a dvr server is already running
3323	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
3324	if [[ "$running_dvrserver_id" != "" ]]
3325	then
3326
3327	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
3328	printf "\n This server is used instead starting a new one!"
3329	printf "\n If required, script \"process_dvr_output\" has to be run manually."
3330
3331	else
3332
3333	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
3334	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
3335	then
3336	cp ${PALM_BIN}/.dvrserver.config .
3337
3338	# Entering the BASEDIR, UID and GID into this file
3339	user_id=`id -u`
3340	group_id=`id -g`
3341	# & is needed as seperator, because TEMPDIR contains /
3342	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
3343	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
3344	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
3345	mv .dvrserver.3 .dvrserver.config
3346	rm .dvrserver.1 .dvrserver.2
3347
3348	# Start dvr server in background, get his id and print on terminal
3349	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
3350	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
3351	printf "\n *** streaming server with id=$dvrserver_id is started in background"
3352	local_dvrserver_running=.TRUE.
3353	else
3354	printf "\n +++ missing file \".dvrserver.config\" in directory:"
3355	printf "\n \"$PALM_BIN\" "
3356	locat=dvr
3357	exit
3358	fi
3359
3360	fi
3361
3362	else
3363	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
3364	fi
3365	fi
3366
3367
3368	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
3369	# LESEN VON PALM)
3370	cat > ENVPAR << %%END%%
3371	&envpar run_identifier = '$fname', host = '$localhost',
3372	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
3373	maximum_parallel_io_streams = $maximum_parallel_io_streams,
3374	maximum_cpu_time_allowed = ${cpumax}.,
3375	revision = '$global_revision',
3376	local_dvrserver_running = $local_dvrserver_running /
3377
3378	%%END%%
3379
3380
3381	# PROGRAMMSTART
3382	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
3383	PATH=$PATH:$TEMPDIR
3384
3385	# MPI debug option (argument checking, slows down execution due to increased latency)
3386	if [[ "$mpi_debug" = true ]]
3387	then
3388	export MPI_CHECK_ARGS=1
3389	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
3390	fi
3391
3392	if [[ "$totalview" = true ]]
3393	then
3394	printf "\n *** totalview debugger will be used"
3395	tv_opt="-tv"
3396	else
3397	tv_opt=""
3398	fi
3399
3400	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
3401	then
3402	if [[ "$ENVIRONMENT" = BATCH ]]
3403	then
3404	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
3405	then
3406	printf "\n +++ debug is allowed in interactive mode only"
3407	locat=debug
3408	exit
3409	fi
3410	fi
3411	if [[ $localhost = decalpha ]]
3412	then
3413	dxladebug a.out
3414	elif [[ $localhost = ibmh ]]
3415	then
3416
3417	# SETUP THE IBM MPI ENVIRONMENT
3418	export MP_SHARED_MEMORY=yes
3419	export AIXTHREADS_SCOPE=S
3420	export OMP_NUM_THREADS=$threads_per_task
3421	export AUTHSTATE=files
3422	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3423
3424	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
3425	export MP_ADAPTER_USE=shared
3426	export MP_CPU_USE=multiple
3427	export MP_TIMEOUT=1200
3428
3429	unset MP_TASK_AFFINITY
3430
3431	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
3432	#(( ii = 1 ))
3433	#while (( ii <= $numprocs ))
3434	#do
3435	# echo $localhost_realname >> hostfile
3436	# (( ii = ii + 1 ))
3437	#done
3438	#export MP_HOSTFILE=hostfile
3439
3440	if [[ "$LOADLBATCH" = yes ]]
3441	then
3442	totalview poe a.out $ROPTS
3443	else
3444	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3445	export TVDSVRLAUNCHCMD=ssh
3446	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3447	fi
3448	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
3449	then
3450	# CURRENTLY NO DEBUGGER ON LCSGI
3451	if [[ $run_coupled_model = true ]]
3452	then
3453	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
3454	locat=debug
3455	exit
3456	else
3457	echo "no_coupling" > runfile_atmos
3458	fi
3459	(( ii = $numprocs / $threads_per_task ))
3460	export OMP_NUM_THREADS=$threads_per_task
3461	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3462	if [[ $threads_per_task != 1 ]]
3463	then
3464	printf "\n threads per task: $threads_per_task"
3465	fi
3466	printf "\n\n"
3467	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3468	then
3469	# export MPI_LAUNCH_TIMEOUT=360
3470	if [[ "$totalview" = true ]]
3471	then
3472	printf "\n running totalview debugger"
3473	mpiexec_mpt $tv_opt -n $ii ./a.out $ROPTS < runfile_atmos
3474	else
3475	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3476	fi
3477	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3478	then
3479	# ulimit -s 300000 # A too large stack size causes problems
3480	# export MV2_NUM_PORTS=2
3481	# export MV2_CPU_MAPPING=0:1:2:3
3482	if [[ "$totalview" = true ]]
3483	then
3484	printf "\n running totalview debugger"
3485	mpiexec $tv_opt ./a.out $ROPTS < runfile_atmos
3486	else
3487	mpiexec ./a.out $ROPTS < runfile_atmos
3488	fi
3489	fi
3490	else
3491	printf "\n +++ no debug available on \"$localhost\" "
3492	printf "\n or not implemented in mrun so far"
3493	locat=debug
3494	exit
3495	fi
3496
3497	# end debug mode
3498	else
3499
3500	# normal execution
3501	if [[ -n $numprocs ]]
3502	then
3503	# RUNNING THE PROGRAM ON PARALLEL MACHINES
3504	if [[ $(echo $host \| cut -c1-3) = ibm ]]
3505	then
3506	# SETUP THE IBM MPI ENVIRONMENT
3507	if [[ $host != ibmh && $host != ibmkisti ]]
3508	then
3509	export MP_SHARED_MEMORY=yes
3510	export AIXTHREAD_SCOPE=S
3511	export OMP_NUM_THREADS=$threads_per_task
3512	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
3513	export AUTHSTATE=files
3514	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3515	# export MP_PRINTENV=yes
3516
3517	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3518	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3519	export MP_WAIT_MODE=poll
3520	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3521	fi
3522
3523	if [[ $host = ibmkisti ]]
3524	then
3525	export LANG=en_US
3526	export MP_SHARED_MEMORY=yes
3527	if [[ $threads_per_task = 1 ]]
3528	then
3529	export MP_SINGLE_THREAD=yes
3530	export MEMORY_AFFINITY=MCM
3531	else
3532	export OMP_NUM_THREADS=$threads_per_task
3533	fi
3534	fi
3535
3536	if [[ "$LOADLBATCH" = yes ]]
3537	then
3538	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3539	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3540	then
3541	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3542	else
3543	if [[ $run_coupled_model = false ]]
3544	then
3545	if [[ "$ocean_file_appendix" = true ]]
3546	then
3547	echo "precursor_ocean" > runfile_atmos
3548	else
3549	echo "precursor_atmos" > runfile_atmos
3550	fi
3551	else
3552	(( iia = $numprocs_atmos / $threads_per_task ))
3553	(( iio = $numprocs_ocean / $threads_per_task ))
3554	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3555	printf "\n using $coupled_mode coupling"
3556	printf "\n\n"
3557	echo "coupled_run $iia $iio" > runfile_atmos
3558	fi
3559	poe ./a.out $ROPTS < runfile_atmos
3560	fi
3561	else
3562	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
3563	then
3564	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3565	elif [[ $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibmy ]]
3566	then
3567	if [[ -f $hostfile ]]
3568	then
3569	cp $hostfile hostfile
3570	else
3571	(( ii = 1 ))
3572	while (( ii <= $numprocs ))
3573	do
3574	echo $localhost_realname >> hostfile
3575	(( ii = ii + 1 ))
3576	done
3577	fi
3578	export MP_HOSTFILE=hostfile
3579	if [[ $run_coupled_model = false ]]
3580	then
3581	if [[ "$ocean_file_appendix" = true ]]
3582	then
3583	echo "precursor_ocean" > runfile_atmos
3584	else
3585	echo "precursor_atmos" > runfile_atmos
3586	fi
3587	else
3588	(( iia = $numprocs_atmos / $threads_per_task ))
3589	(( iio = $numprocs_ocean / $threads_per_task ))
3590	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3591	printf "\n using $coupled_mode coupling"
3592	printf "\n\n"
3593	echo "coupled_run $iia $iio" > runfile_atmos
3594	fi
3595	if [[ $localhost = ibmy ]]
3596	then
3597	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3598	else
3599	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
3600	fi
3601
3602	else
3603	if [[ "$host_file" = "" ]]
3604	then
3605	printf "\n +++ no hostfile given in configuration file"
3606	locat=config_file
3607	exit
3608	else
3609	eval host_file=$host_file
3610	fi
3611	export MP_HOSTFILE=$host_file
3612	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3613	fi
3614	fi
3615	elif [[ $host = nech \|\| $host = necriam ]]
3616	then
3617	(( ii = nodes ))
3618	if [[ $ii = 1 ]]
3619	then
3620	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3621	export MPIPROGINF=YES
3622	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3623	echo "*** execution on single node with mpirun"
3624	mpirun -np $numprocs ./a.out $ROPTS
3625	else
3626	(( i = 0 ))
3627	while (( i < ii ))
3628	do
3629	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3630	(( i = i + 1 ))
3631	done
3632
3633	echo "#!/bin/sh" > mpi_exec_shell
3634	echo " " >> mpi_exec_shell
3635	echo "set -u" >> mpi_exec_shell
3636	echo "F_ERRCNT=0" >> mpi_exec_shell
3637	echo "MPIPROGINV=YES" >> mpi_exec_shell
3638	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3639	echo "cpurest=$cpurest" >> mpi_exec_shell
3640	echo "fname=$fname" >> mpi_exec_shell
3641	echo "localhost=$localhost" >> mpi_exec_shell
3642	echo "return_addres=$return_addres" >> mpi_exec_shell
3643	echo "return_username=$return_username" >> mpi_exec_shell
3644	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3645	echo "write_binary=$write_binary" >> mpi_exec_shell
3646	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3647	echo " " >> mpi_exec_shell
3648	echo "export F_ERRCNT" >> mpi_exec_shell
3649	echo "export MPIPROGINV" >> mpi_exec_shell
3650	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3651	echo "export cpurest" >> mpi_exec_shell
3652	echo "export fname" >> mpi_exec_shell
3653	echo "export localhost" >> mpi_exec_shell
3654	echo "export return_addres" >> mpi_exec_shell
3655	echo "export return_username" >> mpi_exec_shell
3656	echo "export tasks_per_node" >> mpi_exec_shell
3657	echo "export write_binary" >> mpi_exec_shell
3658	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3659	echo " " >> mpi_exec_shell
3660	echo "exec ./a.out" >> mpi_exec_shell
3661
3662	chmod u+x mpi_exec_shell
3663	export MPIPROGINF=YES
3664	mpirun -f multinode_config &
3665	wait
3666
3667	fi
3668	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
3669	then
3670
3671	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3672	# DOES NOT EXIST
3673	if [[ $host != lcsgih && $host != lcsgib ]]
3674	then
3675	if [[ -f $hostfile ]]
3676	then
3677	cp $hostfile hostfile
3678	(( ii = $numprocs / $threads_per_task ))
3679	else
3680	(( ii = 1 ))
3681	while (( ii <= $numprocs / $threads_per_task ))
3682	do
3683	echo $localhost_realname >> hostfile
3684	(( ii = ii + 1 ))
3685	done
3686	fi
3687	eval zeile=\"`head -n $ii hostfile`\"
3688	printf "\n *** running on: $zeile"
3689	fi
3690
3691	(( ii = $numprocs / $threads_per_task ))
3692	export OMP_NUM_THREADS=$threads_per_task
3693	# echo "*** OMP_NUM_THREADS=$OMP_NUM_THREADS"
3694	if [[ $threads_per_task != 1 ]]
3695	then
3696	# increase stack size to unlimited, because large runs
3697	# may abort otherwise
3698	ulimit -Ss unlimited
3699	printf "\n threads per task: $threads_per_task stacksize: unlimited"
3700	fi
3701	if [[ $run_coupled_model = false ]]
3702	then
3703	if [[ "$ocean_file_appendix" = true ]]
3704	then
3705	echo "precursor_ocean" > runfile_atmos
3706	else
3707	echo "precursor_atmos" > runfile_atmos
3708	fi
3709	printf "\n\n"
3710	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3711	then
3712	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3713	then
3714	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3715	# export MPI_DSM_DISTRIBUTE=1
3716	# MPI_DSM_CPULIST: pin MPI processes to cores
3717	if [[ $use_openmp = false ]]
3718	then
3719	if [[ "$sgi_feature" = ice2 ]]
3720	then
3721	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
3722	else
3723	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3724	fi
3725	else
3726	unset MPI_DSM_CPULIST
3727	fi
3728	# MPI_IB_RAILS: use both IB rails on ICE2
3729	export MPI_BUFS_PER_HOST=512
3730	export MPI_IB_RAILS=2
3731	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3732	export MPI_CONNECTIONS_THRESHOLD=8192
3733	# echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
3734	export MPI_TYPE_DEPTH=20
3735	# echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
3736	export MPI_GROUP_MAX=64
3737	# echo "*** MPI_GROUP_MAX=$MPI_GROUP_MAX"
3738	if [[ $use_openmp = true ]]
3739	then
3740	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3741	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3742	else
3743	mpiexec_mpt -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3744	fi
3745
3746	# next is test for openmp usage
3747	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3748	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
3749	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3750	then
3751	export MV2_NUM_PORTS=2
3752	# The default setting of MV2_CPU_MAPPING gives best results
3753	# export MV2_ENABLE_AFFINITY=1
3754	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3755	# if [[ "$sgi_feature" = ice2 ]]
3756	# then
3757	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
3758	# else
3759	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3760	# fi
3761	if [[ $use_openmp = true ]]
3762	then
3763	unset MV2_CPU_MAPPING
3764	export MV2_ENABLE_AFFINITY=0
3765	fi
3766	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
3767	echo "*** MV2_ENABLE_AFFINITY=$MV2_ENABLE_AFFINITY"
3768	if [[ $use_openmp = true ]]
3769	then
3770	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3771	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3772	else
3773	mpiexec -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3774	fi
3775	elif [[ "$mpilib" = impi ]]
3776	then
3777	echo "mpirun -np $tasks_per_node inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos"
3778	mpirun -np $tasks_per_node inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos
3779	fi
3780	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3781	then
3782	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3783	elif [[ $host = lcflow ]]
3784	then
3785	mpiexec -machinefile $TMPDIR/machines -n $ii -env I_MPI_FABRICS shm:ofa a.out < runfile_atmos $ROPTS
3786	else
3787	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3788	fi
3789	else
3790
3791	# currently there is no full MPI-2 support on ICE and XT4
3792	(( iia = $numprocs_atmos / $threads_per_task ))
3793	(( iio = $numprocs_ocean / $threads_per_task ))
3794	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3795	printf "\n using $coupled_mode coupling"
3796	printf "\n\n"
3797
3798	if [[ $coupled_mode = "mpi2" ]]
3799	then
3800	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3801	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3802	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3803	then
3804
3805	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3806	then
3807	# export MPI_LAUNCH_TIMEOUT=360
3808	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3809	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3810	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3811	then
3812	# ulimit -s 300000 # A too large stack size causes problems
3813	# export MV2_NUM_PORTS=2
3814	# export MV2_CPU_MAPPING=0:1:2:3
3815	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3816	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3817	fi
3818
3819	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3820	then
3821
3822	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3823	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3824
3825	else
3826	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3827	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3828	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3829	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3830	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3831	fi
3832	wait
3833
3834	else
3835
3836	echo "coupled_run $iia $iio" > runfile_atmos
3837	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3838	then
3839
3840	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3841	then
3842	# export MPI_LAUNCH_TIMEOUT=360
3843	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3844	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3845	then
3846	# ulimit -s 300000 # A too large stack size causes problems
3847	# export MV2_NUM_PORTS=2
3848	# export MV2_CPU_MAPPING=0:1:2:3
3849	mpiexec ./a.out $ROPTS < runfile_atmos
3850	fi
3851
3852	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3853	then
3854
3855	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3856
3857	elif [[ $host = lck \|\| $host = lckordi ]]
3858	then
3859	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3860	fi
3861	wait
3862	fi
3863
3864	fi
3865	elif [[ $host = decalpha ]]
3866	then
3867	dmpirun -np $numprocs a.out $ROPTS
3868	elif [[ $host = lckyoto ]]
3869	then
3870	set -xv
3871	export P4_RSHCOMMAND=plesh
3872	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
3873	if [[ "$ENVIRONMENT" = BATCH ]]
3874	then
3875	if [[ "$cond2" = fujitsu ]]
3876	then
3877	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
3878	elif [[ "cond2" = pgi ]]
3879	then
3880	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
3881	else
3882	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
3883	fi
3884	else
3885	if [[ "$cond2" = "" ]]
3886	then
3887	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
3888	else
3889	mpirun -np $numprocs ./a.out $ROPTS
3890	fi
3891	fi
3892	set +xv
3893	elif [[ $host = lctit ]]
3894	then
3895	export OMP_NUM_THREADS=$threads_per_task
3896	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3897	if [[ "$threads_per_task" != 1 ]]
3898	then
3899	export MV2_ENABLE_AFFINITY=0
3900	fi
3901	echo "----- PBS_NODEFILE content:"
3902	cat $PBS_NODEFILE
3903	echo "-----"
3904	(( ii = $numprocs / $threads_per_task ))
3905	echo "mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS"
3906	mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS
3907	else
3908	mpprun -n $numprocs a.out $ROPTS
3909	fi
3910	[[ $? != 0 ]] && execution_error=true
3911
3912
3913	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3914	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3915	then
3916	apprentice
3917	fi
3918	else
3919	a.out $ROPTS
3920	fi
3921	fi
3922	if [[ $? != 0 \|\| $execution_error = true ]]
3923	then
3924
3925	# ABBRUCH BEI LAUFZEITFEHLER
3926	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3927	printf "\n +++ runtime error occured"
3928	locat=execution
3929	exit
3930	else
3931	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3932	printf "\n$striche\n *** execution finished \n"
3933
3934	# Stop the dvr streaming server and process the dvr output in order
3935	# to create dvrs- and html-files containing all streams
3936	if [[ "$dvrserver_id" != "" ]]
3937	then
3938	kill $dvrserver_id
3939	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3940
3941	# If there is a directory, data have been output by the
3942	# streaming server. Otherwise, user has chosen dvrp_output=local
3943	if [[ -d DATA_DVR ]]
3944	then
3945
3946	# Add the current dvr configuration file to the dvr output
3947	# directory
3948	cp .dvrserver.config DATA_DVR
3949
3950	# Process the dvr output (option -s for also generating
3951	# sequence mode data)
3952	process_dvr_output -d DATA_DVR -f $fname -s
3953
3954	else
3955
3956	# Process the local output
3957	process_dvr_output -l -d DATA_DVR -f $fname
3958
3959	fi
3960
3961	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3962	then
3963
3964	# Process dvr output generated in local mode (dvrp_output=local)
3965	process_dvr_output -l -d DATA_DVR -f $fname
3966
3967	fi
3968	fi
3969
3970
3971
3972	# Call of combine_plot_fields in order to merge single files written
3973	# by each PE into one file.
3974	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
3975	then
3976	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
3977	printf "\n 2d- and/or 3d-data may be incomplete!"
3978	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
3979	else
3980	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
3981	combine_plot_fields${block}.x
3982	fi
3983
3984
3985
3986	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3987	(( i = 0 ))
3988	while (( i < ioc ))
3989	do
3990	(( i = i + 1 ))
3991	if (( i == 1 ))
3992	then
3993	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
3994	fi
3995	printf "\n >>> ${out_command[$i]}"
3996	eval ${out_command[$i]}
3997	if (( i == ioc ))
3998	then
3999	printf "\n$striche\n"
4000	fi
4001	done
4002
4003
4004	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
4005	if [[ $do_trace = true ]]
4006	then
4007	printf "\n\n"
4008	ls -al
4009	fi
4010
4011
4012
4013	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
4014	(( i = 0 ))
4015	while (( i < iout ))
4016	do
4017	(( i = i + 1 ))
4018	if (( i == 1 ))
4019	then
4020	printf "\n\n *** saving OUTPUT-files:\n$striche"
4021	fi
4022
4023	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
4024	files_for_pes=false; filetyp=file
4025	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
4026	then
4027	files_for_pes=true; filetyp=directory
4028	actionout[$i]=""
4029	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
4030	then
4031	actionout[$i]=""
4032	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
4033	then
4034	files_for_pes=true; filetyp=directory
4035	actionout[$i]="ar"
4036	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
4037	then
4038	actionout[$i]="ar"
4039	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
4040	then
4041	files_for_pes=true; filetyp=directory
4042	actionout[$i]="fl"
4043	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
4044	then
4045	actionout[$i]="fl"
4046	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
4047	then
4048	files_for_pes=true; filetyp=directory
4049	actionout[$i]="tr"
4050	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
4051	then
4052	actionout[$i]="tr"
4053	fi
4054
4055	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
4056	then
4057	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
4058	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
4059	then
4060	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
4061	else
4062
4063
4064	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
4065	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
4066	# REMOTE-RECHNUNGEN
4067	if [[ "${actionout[$i]}" = tr ]]
4068	then
4069	if [[ $localhost != $fromhost ]]
4070	then
4071	if [[ $files_for_pes = false ]]
4072	then
4073	cps=""
4074	cst=""
4075	else
4076	cps=-c
4077	cst="/"
4078	fi
4079	if [[ $localhost = nech ]]
4080	then
4081
4082	# TRANSFER IN EIGENSTAENDIGEM JOB
4083	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4084	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4085	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4086	if [[ $files_for_pes = false ]]
4087	then
4088	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4089	else
4090	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
4091	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
4092	fi
4093
4094	echo "set -x" > transfer_${localout[$i]}
4095	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4096
4097	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
4098	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
4099	printf "\n or higher cycle\n"
4100	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4101
4102	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4103
4104	if [[ $localhost = nech ]]
4105	then
4106	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
4107	else
4108	if [[ "$LOGNAME" = b323013 ]]
4109	then
4110	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
4111	else
4112	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
4113	fi
4114	fi
4115
4116	else
4117
4118	# TRANSFER INNERHALB DIESES JOBS
4119	transfer_failed=false
4120	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
4121	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
4122	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4123	[[ $? != 0 ]] && transfer_failed=true
4124
4125	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4126	# LOKALER MASCHINE ANLEGEN
4127	if [[ $transfer_failed = true ]]
4128	then
4129	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4130	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4131
4132	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4133	# ANLEGEN.
4134	eval local_catalog=${pathout[$i]}
4135	if [[ ! -d $local_catalog ]]
4136	then
4137	printf " *** local directory does not exist. Trying to create:\n"
4138	printf " $local_catalog \n"
4139	mkdir -p $local_catalog
4140	fi
4141	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4142	transfer_problems=true
4143	fi
4144	fi
4145	else
4146
4147	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
4148	actionout[$i]=""
4149	fi
4150	fi
4151
4152
4153	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
4154	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
4155	# REMOTE-RECHNUNGEN
4156	if [[ "${actionout[$i]}" = tra ]]
4157	then
4158	if [[ $localhost != $fromhost ]]
4159	then
4160	if [[ $localhost = ibmh \|\| $localhost = nech ]]
4161	then
4162
4163	# TRANSFER IN EIGENSTAENDIGEM JOB
4164	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4165	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4166	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4167	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4168
4169	echo "set -x" > transfer_${localout[$i]}
4170	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4171
4172	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
4173	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
4174	printf "\n or higher cycle\n"
4175	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4176
4177	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4178
4179	if [[ $localhost = nech ]]
4180	then
4181	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
4182	else
4183	if [[ $LOGNAME = b323013 ]]
4184	then
4185	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
4186	else
4187	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
4188	fi
4189	fi
4190
4191	else
4192
4193	# TRANSFER INNERHALB DIESES JOBS
4194	transfer_failed=false
4195	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
4196	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
4197	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4198	[[ $? != 0 ]] && transfer_failed=true
4199
4200	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4201	# LOKALER MASCHINE ANLEGEN
4202	if [[ $transfer_failed = true ]]
4203	then
4204	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4205	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4206
4207	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4208	# ANLEGEN
4209	eval local_catalog=${pathout[$i]}
4210	if [[ ! -d $local_catalog ]]
4211	then
4212	printf " *** local directory does not exist. Trying to create:\n"
4213	printf " $local_catalog \n"
4214	mkdir -p $local_catalog
4215	fi
4216
4217	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4218	transfer_problems=true
4219	fi
4220	fi
4221	else
4222
4223	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
4224	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
4225	actionout[$i]=a
4226	fi
4227	fi
4228
4229
4230	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
4231	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
4232	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
4233	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
4234	if [[ "${actionout[$i]}" = fl ]]
4235	then
4236	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4237	chmod g+rx $tmp_data_catalog
4238	if [[ $files_for_pes = false ]]
4239	then
4240	printf "\n >>> OUTPUT: ${localout[$i]} to"
4241	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4242	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
4243	else
4244	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
4245	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4246	mkdir $tmp_data_catalog/${frelout[$i]}
4247	cd ${localout[$i]}
4248	for file in $(ls *)
4249	do
4250	ln -f $file $tmp_data_catalog/${frelout[$i]}
4251	done
4252	cd $TEMPDIR
4253	fi
4254
4255
4256	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
4257	if [[ $store_on_archive_system = true ]]
4258	then
4259
4260	if [[ $archive_system = asterix ]]
4261	then
4262	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4263	if [[ $files_for_pes = false ]]
4264	then
4265	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4266	else
4267	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4268	fi
4269	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4270	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
4271	echo "then" >> archive_${frelout[$i]}
4272	echo " do_stageout=false" >> archive_${frelout[$i]}
4273	echo "else" >> archive_${frelout[$i]}
4274	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
4275	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
4276	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
4277	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
4278	if [[ $files_for_pes = false ]]
4279	then
4280	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
4281	else
4282	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
4283	fi
4284	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
4285	echo "fi" >> archive_${frelout[$i]}
4286	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4287	elif [[ $archive_system = DMF ]]
4288	then
4289	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4290	if [[ $files_for_pes = false ]]
4291	then
4292	printf "\n +++ archiving of single files impossible with $archive_system !\n"
4293	locat=DMF
4294	exit
4295	else
4296	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
4297	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
4298	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
4299	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
4300	fi
4301	elif [[ $archive_system = tivoli ]]
4302	then
4303	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4304	if [[ $files_for_pes = false ]]
4305	then
4306	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4307	echo "set -x" >> archive_${frelout[$i]}
4308	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4309	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4310	else
4311
4312	echo "set -x" >> archive_${frelout[$i]}
4313	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
4314	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4315	cd $tmp_data_catalog
4316	all_files=`ls -1 ${frelout[$i]}/*`
4317	cd - > /dev/null
4318	(( inode = 0 ))
4319	(( tp1 = tasks_per_node + 1 ))
4320	while (( inode < nodes ))
4321	do
4322	# echo "*** all_files = \"$all_files\" "
4323	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4324	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4325	# echo "*** tasks_per_node = \"$tasks_per_node\" "
4326	# echo "*** files = \"$files\" "
4327	# echo "*** all_files = \"$all_files\" "
4328	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4329	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4330	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
4331	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4332	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4333	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4334	(( inode = inode + 1 ))
4335	done
4336	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4337	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4338	fi
4339	elif [[ $archive_system = ut ]]
4340	then
4341	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4342	if [[ $files_for_pes = false ]]
4343	then
4344	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4345	echo "set -x" >> archive_${frelout[$i]}
4346	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4347	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4348	else
4349
4350	echo "set -x" >> archive_${frelout[$i]}
4351	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
4352	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
4353	cd $tmp_data_catalog
4354	all_files=`ls -1 ${frelout[$i]}/*`
4355	cd - > /dev/null
4356	(( inode = 0 ))
4357	(( tp1 = tasks_per_node + 1 ))
4358	while (( inode < nodes ))
4359	do
4360	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4361	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4362	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4363	(( inode = inode + 1 ))
4364	done
4365	fi
4366	elif [[ $archive_system = none ]]
4367	then
4368	printf " +++ archiving on $localhost not available!\n"
4369	fi
4370
4371	if [[ $archive_system != none ]]
4372	then
4373	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
4374	then
4375	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
4376	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog archive_${frelout[$i]}
4377	elif [[ $localhost = nech ]]
4378	then
4379	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
4380	fi
4381	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4382	fi
4383	else
4384	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
4385	fi
4386
4387
4388	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
4389	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4390	if [[ $files_for_pes = false ]]
4391	then
4392	cat /dev/null > ${pathout[$i]}
4393	else
4394	mkdir -p ${pathout[$i]}
4395	fi
4396
4397	fi
4398
4399
4400	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
4401	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
4402	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4403	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
4404	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
4405	# GEMAESSEN ARCHIVIERUNGEN GESETZT
4406	if [[ "${actionout[$i]}" = ar ]]
4407	then
4408	if [[ $files_for_pes = false ]]
4409	then
4410	printf "\n >>> OUTPUT: ${localout[$i]} to"
4411	printf "\n ${pathout[$i]}"
4412	printf "\n File will be copied to archive-system ($archive_system) !\n"
4413	else
4414	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
4415	printf "\n ${pathout[$i]}"
4416	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
4417	fi
4418	mv ${localout[$i]} ${frelout[$i]}
4419
4420	file_saved=false
4421
4422	if [[ $archive_system = asterix ]]
4423	then
4424	do_stageout=true
4425	(( stageout_anz = 0 ))
4426	while [[ $do_stageout = true ]]
4427	do
4428	if [[ $files_for_pes = false ]]
4429	then
4430	stageout ${frelout[$i]} > STAGE_OUTPUT
4431	else
4432	stageout -t ${frelout[$i]} > STAGE_OUTPUT
4433	fi
4434	cat STAGE_OUTPUT
4435	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
4436	then
4437	file_saved=true
4438	do_stageout=false
4439	else
4440	if [[ $files_for_pes = false ]]
4441	then
4442	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
4443	else
4444	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
4445	fi
4446	(( stageout_anz = stageout_anz + 1 ))
4447	if (( stageout_anz == 10 ))
4448	then
4449	printf "\n +++ stoped after 10 unsuccessful tries!"
4450	archive_save=false
4451	do_stageout=false
4452	else
4453	printf "\n *** new try to store on archive after 15 min:"
4454	sleep 900
4455	fi
4456	fi
4457	done
4458	elif [[ $archive_system = DMF ]]
4459	then
4460	if [[ $files_for_pes = false ]]
4461	then
4462	printf "\n +++ archiving of single files impossible on $archive_system!\n"
4463	locat=DMF
4464	exit
4465	else
4466	rm -rf $ARCHIVE/${frelout[$i]}
4467	cp -r ${frelout[$i]} $ARCHIVE
4468	fi
4469	file_saved=true
4470	elif [[ $archive_system = tivoli ]]
4471	then
4472	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4473	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4474	# GELEGT WERDEN
4475	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4476	chmod g+rx $tmp_data_catalog
4477	if [[ $files_for_pes = false ]]
4478	then
4479	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4480	else
4481	mkdir $tmp_data_catalog/${frelout[$i]}
4482	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4483	fi
4484
4485	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4486	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4487	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4488	if [[ $files_for_pes = false ]]
4489	then
4490	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4491	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4492	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4493	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4494	else
4495	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4496	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4497	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4498	fi
4499
4500	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
4501	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4502	file_saved=true
4503
4504	elif [[ $archive_system = ut ]]
4505	then
4506	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4507	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4508	# GELEGT WERDEN
4509	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4510	chmod g+rx $tmp_data_catalog
4511	if [[ $files_for_pes = false ]]
4512	then
4513	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4514	else
4515	mkdir $tmp_data_catalog/${frelout[$i]}
4516	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4517	fi
4518
4519	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4520	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4521	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4522	if [[ $files_for_pes = false ]]
4523	then
4524	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4525	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4526	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4527	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4528	else
4529	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4530	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4531	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4532	fi
4533
4534	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
4535	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4536	file_saved=true
4537
4538	else
4539	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
4540	archive_save=false
4541	fi
4542	if [[ $file_saved = true ]]
4543	then
4544	if [[ $files_for_pes = false ]]
4545	then
4546	cat /dev/null > ${pathout[$i]}
4547	else
4548	mkdir -p ${pathout[$i]}
4549	fi
4550	fi
4551	fi
4552
4553	# APPEND AUF LOKALER MASCHINE
4554	if [[ "${actionout[$i]}" = "a" ]]
4555	then
4556	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4557	then
4558	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}.${extout[$i]}\n"
4559	cat ${localout[$i]} >> ${pathout[$i]}.${extout[$i]}
4560	else
4561	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
4562	cat ${localout[$i]} >> ${pathout[$i]}
4563	fi
4564	fi
4565
4566	# KOPIEREN AUF LOKALER MASCHINE
4567	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
4568	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
4569	then
4570
4571	# KOPIEREN AUF EINPROZESSORMASCHINE
4572	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4573	then
4574	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
4575	if [[ $link_local_output = true ]]
4576	then
4577	printf " using ln -f\n"
4578	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4579	fi
4580	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4581	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
4582	then
4583	if [[ $link_local_output = true ]]
4584	then
4585	printf " ln failed, using cp...\n"
4586	fi
4587	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4588	fi
4589	else
4590	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
4591	if [[ $link_local_output = true ]]
4592	then
4593	printf " using ln -f\n"
4594	ln -f ${localout[$i]} ${pathout[$i]}
4595	fi
4596	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4597	if [[ ! -f "${pathout[$i]}" ]]
4598	then
4599	if [[ $link_local_output = true ]]
4600	then
4601	printf " ln failed, using cp...\n"
4602	fi
4603	cp ${localout[$i]} ${pathout[$i]}
4604	fi
4605	fi
4606
4607	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
4608	then
4609
4610	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
4611	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
4612	# WIRD DANN KOPIERT
4613	# PER MOVE UMBENANNT WERDEN
4614	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4615	if [[ $link_local_output = true ]]
4616	then
4617	printf " using ln -f\n"
4618	mkdir ${pathout[$i]}
4619	cd ${localout[$i]}
4620	for file in $(ls *)
4621	do
4622	ln -f $file ${pathout[$i]}
4623	done
4624	cd $TEMPDIR
4625	fi
4626	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4627	if [[ ! -f "${pathout[$i]}/_0000" ]]
4628	then
4629	if [[ $link_local_output = true ]]
4630	then
4631	printf " ln failed for .../_0000, using cp...\n"
4632	fi
4633	cp -r ${localout[$i]} ${pathout[$i]}
4634	fi
4635
4636	fi
4637	fi
4638	done
4639	if (( i != 0 ))
4640	then
4641	if [[ $transfer_problems = true ]]
4642	then
4643	printf "\n$striche\n *** OUTPUT-files saved"
4644	printf "\n +++ WARNING: some data transfers failed! \n"
4645	else
4646	printf "\n$striche\n *** all OUTPUT-files saved \n"
4647	fi
4648	fi
4649
4650
4651	# EVENTUELL FOLGEJOB STARTEN
4652	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4653	if [[ -f CONTINUE_RUN ]]
4654	then
4655
4656	if [[ $archive_save = true ]]
4657	then
4658
4659	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4660	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4661	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4662	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4663	# HANDEN
4664	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4665	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4666	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4667	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4668	then
4669	mc=`echo $mc \| sed 's/#/f/g'`
4670	fi
4671
4672
4673	# JOB STARTEN
4674	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4675	echo " $mc"
4676	printf "\n$striche\n"
4677	if [[ $localhost != $fromhost ]]
4678	then
4679
4680	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibms ]]
4681	then
4682	echo "*** ssh will be used to initiate restart-runs!"
4683	echo " return_addres=\"$return_addres\" "
4684	echo " return_username=\"$return_username\" "
4685	if [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4686	then
4687	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export LD_LIBRARY_PATH=\$LD_LIBRARY_PATH:/muksoft/packages/intel/Compiler/11.1/073/lib/intel64/;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4688	else
4689	if [[ $localhost = ibmkisti ]]
4690	then
4691	ssh $usern@gaiad "ssh $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4692	else
4693	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4694	fi
4695	fi
4696	else
4697	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4698	locat=restart; exit
4699	fi
4700
4701	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4702	# DER AKTUELLE JOB ENDET
4703	if [[ $queue = special1q ]]
4704	then
4705	sleep 120
4706	else
4707	sleep 30
4708	fi
4709
4710	else
4711
4712	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4713	# RUFEN WERDEN, AUSSER AUF lcfimm
4714	cd $LOCAL_PWD
4715	if [[ $localhost = lcfimm ]]
4716	then
4717	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4718	else
4719	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4720	fi
4721	cd - > /dev/null
4722	fi
4723	printf "\n$striche\n *** restart-run initiated \n"
4724
4725
4726	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4727	# GEHOLT WORDEN SIND, LOESCHEN
4728	(( i = 0 ))
4729	while (( i < iin ))
4730	do
4731	(( i = i + 1 ))
4732	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4733	then
4734	rm -r $tmp_data_catalog/${frelin[$i]}
4735	fi
4736	done
4737
4738	else
4739
4740	printf "\n +++ no restart-run possible, since errors occured"
4741	printf "\n during the archive process"
4742	fi
4743
4744	fi
4745
4746
4747
4748	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4749	if [[ "$email_notification" != "none" ]]
4750	then
4751
4752	if [[ $localhost != $fromhost ]]
4753	then
4754	if [[ -f CONTINUE_RUN ]]
4755	then
4756	echo "PALM restart run necessary" > email_text
4757	echo "description header of actual run:" >> email_text
4758	cat CONTINUE_RUN >> email_text
4759	echo "mrun-command to restart:" >> email_text
4760	echo "$mc" >> email_text
4761	else
4762	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4763	fi
4764	mail $email_notification < email_text
4765	printf "\n *** email notification sent to \"$email_notification\" "
4766	fi
4767	fi
4768
4769
4770
4771	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4772	cd $HOME
4773	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4774
4775	else
4776
4777
4778	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4779	# CHENDE AKTIONEN DURCHGEFUEHRT
4780
4781	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4782	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
4783	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4784	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4785	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4786	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4787	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4788	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4789	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4790	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4791	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4792	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4793	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4794	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4795	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4796	if [[ $use_openmp = true ]]
4797	then
4798	mrun_com=${mrun_com}" -O $threads_per_task"
4799	fi
4800	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4801	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
4802	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4803	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4804	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4805	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4806	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4807	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4808	[[ "$max_par_io_str" != "" ]] && mrun_com=${mrun_com}" -w $max_par_io_str"
4809	if [[ $do_remote = true ]]
4810	then
4811	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4812	fi
4813
4814
4815	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4816	jobfile=jobfile.$RANDOM
4817
4818
4819	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4820	echo "mkdir $TEMPDIR" >> $jobfile
4821	echo "cd $TEMPDIR" >> $jobfile
4822
4823
4824	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4825	if [[ $do_trace = true ]]
4826	then
4827	echo "set -x" >> $jobfile
4828	else
4829	echo "set +vx" >> $jobfile
4830	fi
4831
4832
4833	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4834	# DATEI FUER DEN JOB
4835	if [[ $( echo $host \| cut -c1-5 ) = lcsgi \|\| $host = ibmkisti ]]
4836	then
4837
4838	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4839	# KOPIEREN
4840	if [[ $restart_run != true ]]
4841	then
4842	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4843	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4844	fi
4845
4846	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4847	# (BEI JOBS AUF LOKALEM RECHNER REICHT CP)
4848	echo "set -x" >> $jobfile
4849	if [[ $host = $localhost ]]
4850	then
4851	echo "cp -r $working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4852	else
4853	if [[ $host != ibmkisti ]]
4854	then
4855	echo "scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4856	else
4857	# on KISTI's IBM firewall is only opened on interactive node
4858	echo "localdir=\`pwd\`" >> $jobfile
4859	echo "ssh $remote_username@gaiad \"cd \$localdir; scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
4860	fi
4861	fi
4862	echo "export SOURCES_COMPLETE=true" >> $jobfile
4863
4864	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4865	# ARBEITSVERZEICHNIS VERSCHIEBEN
4866	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4867	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4868	echo "execute_mrun=true" >> $jobfile
4869	echo " " >> $jobfile
4870
4871	else
4872
4873	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4874	# SOWIE GEGEBENENFALLS DES MAKEFILES
4875	if [[ $do_compile = true ]]
4876	then
4877
4878	source_catalog=SOURCES_FOR_RUN_$fname
4879
4880	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4881	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4882	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4883	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4884	echo "export SOURCES_COMPLETE=true" >> $jobfile
4885	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4886
4887	for filename in $source_list
4888	do
4889	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4890	echo "cat > $filename << \"%END%\"" >> $jobfile
4891	cat $source_catalog/$filename >> $jobfile
4892	echo " " >> $jobfile
4893	echo "%END%" >> $jobfile
4894	echo " " >> $jobfile
4895	done
4896
4897	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4898	echo "cat > Makefile << \"%END%\"" >> $jobfile
4899	cat $source_catalog/Makefile >> $jobfile
4900	echo " " >> $jobfile
4901	echo "%END%" >> $jobfile
4902	echo " " >> $jobfile
4903
4904	echo "cd - > /dev/null" >> $jobfile
4905
4906	fi
4907
4908
4909	# ABSPEICHERN DER KONFIGURATIONSDATEI
4910	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4911	echo "cat > $config_file << \"%END%\"" >> $jobfile
4912	cat $config_file >> $jobfile
4913	echo "%END%" >> $jobfile
4914	echo " " >> $jobfile
4915
4916
4917	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
4918	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4919	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
4920	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
4921	echo "%END%" >> $jobfile
4922	echo "chmod u+x $mrun_script_name" >> $jobfile
4923	echo "execute_mrun=true" >> $jobfile
4924	echo " " >> $jobfile
4925
4926	fi
4927
4928
4929	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
4930	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
4931	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
4932	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
4933	if [[ $do_remote = true ]]
4934	then
4935	(( i = 0 ))
4936	while (( i < iin ))
4937	do
4938	(( i = i + 1 ))
4939	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
4940	if [[ "${transin[$i]}" = job ]]
4941	then
4942	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
4943	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
4944	echo " " >> $jobfile
4945	echo "%END%" >> $jobfile
4946	else
4947	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
4948	fi
4949
4950	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
4951	echo "if [[ \$? = 1 ]]" >> $jobfile
4952	echo "then" >> $jobfile
4953	echo " echo \" \" " >> $jobfile
4954	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
4955	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
4956	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
4957	echo " execute_mrun=false" >> $jobfile
4958	echo "fi" >> $jobfile
4959	done
4960	fi
4961
4962	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
4963	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
4964	echo "LOCAL_PWD=$working_directory" >> $jobfile
4965	echo "export LOCAL_PWD" >> $jobfile
4966
4967	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
4968	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
4969	echo "export LOCAL_MRUN_PATH" >> $jobfile
4970
4971	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
4972	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
4973	then
4974	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
4975	fi
4976
4977	# MRUN AUF ZIELRECHNER AUFRUFEN (queue is workaround for ibmkisti)
4978	echo "set -x" >> $jobfile
4979	echo "queue=$queue" >> $jobfile
4980	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
4981
4982	echo 'ls -al; echo `pwd`' >> $jobfile
4983	echo "cd \$HOME" >> $jobfile
4984	echo "rm -rf $TEMPDIR" >> $jobfile
4985
4986
4987
4988
4989	# JOB PER SUBJOB STARTEN
4990	if [[ $silent = false ]]
4991	then
4992	printf "\n "
4993	else
4994	printf "\n\n"
4995	fi
4996
4997	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $jobfile
4998	rm -rf $jobfile
4999
5000
5001	fi # ENDE REMOTE-TEIL
5002
5003
5004
5005	# ENDE DER PROZEDUR

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