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mrun @ 784

Last change on this file since 784 was 759, checked in by raasch, 13 years ago

New:
---

The number of parallel I/O operations can be limited with new mrun-option -w.
(advec_particles, data_output_2d, data_output_3d, header, init_grid, init_pegrid, init_3d_model, modules, palm, parin, write_3d_binary)

Changed:

mrun option -T is obligatory

Errors:

Bugfix: No zero assignments to volume_flow_initial and volume_flow_area in
case of normal restart runs. (init_3d_model)

initialization of u_0, v_0. This is just to avoid access of uninitialized
memory in exchange_horiz_2d, which causes respective error messages
when the Intel thread checker (inspector) is used. (production_e)

Bugfix for ts limitation (prandtl_fluxes)

Property svn:keywords set to Id Rev

File size: 177.8 KB

Line
1	#!/bin/ksh
2	# mrun - script for running PALM jobs
3	# $Id: mrun 759 2011-09-15 13:58:31Z raasch $
4
5	# Procedure for interactive/batch PALM runs (initial runs and automatic
6	# restart runs)
7
8	# Last changes:
9	# 03/03/94 - Siggi - Entwicklungsbeginn
10	# 21/03/94 - Siggi - Entwicklungsabschluss (Version 1.0)
11	# 09/12/94 - Siggi - allexport unterbunden; statt dessen werden jetzt ein-
12	# zelne Variable exportiert. Dies ist noetig, weil an-
13	# sonsten irgendein Speicher ueberlaeuft und von mrun
14	# aufgerufene Programme (z.B. stageout) mit Fehlern
15	# abbrechen (too many arguments)
16	# 20/06/95 - Siggi - noclobber muss explizit abgeschaltet, da jetzt
17	# defaultmaessig im RRZN-Profile eingeschaltet
18	# 10/06/97 - Siggi - Zusaetzliche Option -C bei cpp, damit // nicht
19	# wegfallen
20	# 25/04/00 - Siggi - Version 1.5
21	# remote_addres und remote_user in return_addres bzw.
22	# return_username umbenannt, return_username wird dem
23	# mrun-Aufruf im Job ueber Option -U mitgegeben.
24	# Neue Variable remote_username, die beim interaktiven
25	# mrun-Aufruf zwingend ueber die neue Option -u oder
26	# in der Konfigurationsdatei angegeben werden muss.
27	# 08/02/01 - Siggi - Alle mrun-Meldungen ins englische uebersetzt,
28	# Version 1.7
29	# 05/05/02 - Siggi - Uebersetzungen mittels make-Mechanismus moeglich
30	# 21/11/02 - Siggi - ENV-Variable XLFRTEOPTS wird vor Ausfuehrung auf
31	# IBM gesetzt, um Record-Laenge der NAMELIST-Dateien,
32	# zu bestimmen; Praeprozessoroptionen haben nun alle
33	# die Form -Dtext=text, weil auf IBM sonst text durch
34	# die leere Zeichenkette ersetzt wird
35	# 01/08/03 - Siggi - Test of implementing dvrp+1PE on ibm
36	# 07/01/04 - Siggi - additional preprocessor directive for ibm included
37	# (-D$OMP=OMP) in order to avoid problems with
38	# OMP_NUM_THREADS
39	# 04/01/05 - Siggi - archiving on hanni and berni is done in separate
40	# tar files, one for each node used
41	# 07/01/04 - Siggi - old code for t3e, vpp and hpcs eliminated
42	# 09/01/05 - Siggi - workaround for getting the IP address on gfdl3
43	# 17/01/05 - Siggi - job for data transfer to local machine now within
44	# job class c1 (HLRN)
45	# 27/01/05 - Siggi - IP address workaround for gfdl3 removed
46	# 28/01/05 - Siggi - tar-filenames on $PERM (HLRN) now include the
47	# base filename and cycle number
48	# 16/02/05 - Gerald - hababai validated
49	# 14/03/05 - Siggi - abort on NEC after first runtime error (F_ERRCNT)
50	# 29/03/05 - Marcus - berni*-en0 validated
51	# 21/04/05 - Siggi - transfer-job-protocol for avs-data is no more stored
52	# 24/04/05 - Siggi - netcdf support on lcmuk
53	# 25/04/05 - Siggi - netcdf support on gfld3 (decalpha)
54	# 11/05/05 - Siggi - files with non-numeric extensions (.xxx after cycle
55	# number) can now be used within interactive runs
56	# 12/05/05 - Siggi - netcdf support on ibm
57	# 13/05/05 - Siggi - error in tar-filenames on $PERM (HLRN) removed
58	# 18/05/05 - Siggi - netcdf support on nec
59	# 24/05/05 - Siggi - netcdf support on ibms
60	# 14/06/05 - Siggi - sleep interval after submit of restart job increased
61	# to 30 seconds
62	# 28/06/05 - Siggi - bora adjusted to new intel compiler (LD_LIBRARY_
63	# PATH is temporarily set)
64	# 07/09/05 - Siggi - setting of MP_EAGER_LIMIT switched off because it
65	# caused warnings in the job protocol
66	# 20/10/05 - Siggi - update of netcdf-version on decalpha (gfdl3)
67	# 25/10/05 - Siggi - error in listing files for getting the cycle number
68	# removed
69	# 26/10/05 - Siggi - new paths for dvrp-library, transfer of catalogs
70	# realized by file attribute trpe
71	# 28/10/05 - Siggi - if existing, the file extension is output in case
72	# of missing input file - no job abort in case of
73	# missing input files with file extensions
74	# (preliminary solution)
75	# 31/10/05 - Siggi - data transfer from nech now within seperate job
76	# 04/11/05 - Siggi - netcdf 3.6.0-p1 on ibmh/ibmb
77	# 07/12/05 - Siggi - gallego and elephanta admitted
78	# 30/12/05 - Siggi - gfdl5 (ibmy) admitted
79	# 10/01/06 - Siggi - cpp directive for NetCDF 64bit support
80	# 20/01/06 - Siggi - cpp directive for ibmy
81	# 09/02/06 - Siggi - ibmy admitted for batch mode
82	# 13/04/06 - Siggi - ostria admitted
83	# 18/04/06 - Siggi - usage of OpenMP implemented (additional option -O)
84	# 10/05/06 - Siggi - environment variable XLSMPOPTS set on IBM for
85	# optimization of OpenMP runs (option stacksize is
86	# necessary for large gridpoint numbers because
87	# otherwise a segmentation fault occurs)
88	# 23/05/05 - Siggi - lctit (SUN Fire X4600) admitted
89	# 21/08/06 - Siggi - standard mrun path on scirocco is as on bora
90	# 23/08/06 - Siggi - netcdf support for scirocco (notebook)
91	# 20/09/06 - Marcus - add DVRP library on nech
92	# 24/10/06 - Siggi - Environment variables for PALM steering are written
93	# on local NAMELIST file ENVPAR
94	# 24/11/06 - Siggi - levanto admitted, maestro switched to ifc 9.1
95	# 28/11/06 - Siggi - call to interpret_config.x_levanto because of SuSe 10
96	# 06/02/07 - Siggi - add DVRP library on lcmuk
97	# 07/02/07 - Siggi - revision of source code handling, source code is
98	# now expected in directory given by source_path and
99	# not in the current working directory, source code
100	# files provided in add_source_path are allways
101	# compiled, source code to be compiled is allways
102	# sampled in SOURCES_FOR_RUN_$fname which is a
103	# subdirectory of the current working directory,
104	# -s TEST changed to -s WRITE_PERMIT or -s WP,
105	# adapted for RIAM (neck)
106	# bugfix for cycle number of output file (extout)
107	# all hpmuk-related code removed
108	# 14/02/07 - Siggi - dvrp support for neck added
109	# 28/02/07 - Siggi - empty lines in configuration file are accepted
110	# mrun_path replaced by PALM_BIN,
111	# all machines are calling interpret_config.x
112	# 14/03/07 - Siggi - fimm admitted, revision number added to terminal
113	# output
114	# 16/03/07 - Siggi - adjustments for lctit
115	# 29/03/07 - Siggi - global revision transfered to batch job by new
116	# option -G
117	# 30/03/07 - Siggi - compilation "by hand" removed, cpp-directives/options
118	# + netcdf/dvrp-options are read from configuration
119	# file, host identifier (local_host) is read from
120	# config file, code related to ftp filetransfer
121	# removed (incl. option -f)
122	# 19/06/07 - Siggi - time limit for cdata jobs increased
123	# 25/07/07 - Siggi - two sets of executables can be started on lcmuk,
124	# if new option -Y (coupling) is given,
125	# output of executables to aout_output removed,
126	# messages are immediately written to stdout instead
127	# 03/08/07 - Marcus - add XOPT="-X $numprocs" for lcfimm
128	# 09/08/07 - Marcus - workaround on lcfimm to propagate environment
129	# variables out to the nodes in coupled mode -disabled-
130	# 13/08/07 - Marcus - start local restart jobs per ssh on lcfimm
131	# 28/08/07 - Marcus - completely remove workaround on lcfimm to propagate
132	# environment variables out to the nodes in coupled mode
133	# 15/10/07 - Siggi - Preliminary adjustments for lctit, based on Jin's
134	# suggestions
135	# 19/10/07 - Marcus - further adjustments for lctit: add new optional
136	# argument -g group_number, admit all sla* node_usage
137	# queues
138	# 30/10/07 - Marcus - further adjustments for queues on lctit
139	# 14/02/08 - Bjoern - link of restart files with long file name possible
140	# 28/02/08 - Marcus - If environment variable link_local_output is set to
141	# true, mrun tries "ln -f" on local output and resorts
142	# to "cp" or "cp -r" on error
143	# 15/04/08 - Siggi - argument -c introduced to most of the subjob calls,
144	# which allows the user to choose his own job catalog
145	# by setting job_catalog in the configuration file
146	# (default is ~/job_queue),
147	# workaround for mpiexec with -env option,
148	# adjustments for lcxt4 (Bergen Center for Computational
149	# Science)
150	# 22/05/08 - Marcus - If environment variable link_local_input is set to
151	# true, mrun tries "ln -f" on local input and resorts
152	# to "cp" or "cp -r" on error
153	# 27/05/08 - Siggi - PATH is set to PALM_BIN everywhere (missing so far)
154	# 14/07/08 - Siggi - adjustments for lcsgih
155	# 08/08/08 - Marcus - typo removed in lcxt4 branch
156	# 17/09/08 - Siggi - restart mechanism adjusted for lcsgi
157	# 02/10/08 - BjornM - argument "-Y" modified, adjustments for coupled runs
158	# 21/10/08 - Siggi - bugfix for the case that -K has more than one
159	# argument
160	# 08/11/08 - Siggi - bugfix for depository path settings in configuration
161	# file
162	# 11/11/08 - Siggi - rules for using user code files changed: user
163	# code splitted into one file per subroutine,
164	# user can provide his/her own makefile, only
165	# default source-code filenames are allowed
166	# 14/11/08 - Siggi - cond1 and cond2 are part of the depository name
167	# 08/01/09 - Siggi - mpi module on sgi machines to be used can be set
168	# with environment variable mpilib
169	# 13/01/09 - Siggi - totalview on hice/bice can be used in debug mode
170	# using environment variable totalview
171	# 25/02/09 - Siggi - cputime-option (-t) is allowed to be omitted for
172	# interactive runs
173	# 05/03/09 - Siggi - adjustments for new NEC-SX9 at RIAM (necriam)
174	# 16/03/09 - Siggi - dvrp_lib, dvrp_inc replaced by dvr_lib, dvr_inc,
175	# dvr streaming server is automatically started using
176	# new variable dvr_server and a configuration file
177	# .dvrserver.config,
178	# processing of dvr output files using new script
179	# process_dvr_output implemented, in order to make
180	# dvr application more user friendly
181	# 20/03/09 - Marcus - update of n1ge command for lctit
182	# 16/04/09 - Siggi - new option -y for precursor (uncoupled) ocean runs
183	# to be followed by a coupled atmosphere-ocean run
184	# 21/04/09 - Siggi - adjustments for new IBM at DKRZ, which is now ibmh
185	# 24/06/09 - BjornM - adjustments for coupled/precursor runs on ibmy
186	# 08/07/09 - Siggi - default value for email_notification is none,
187	# option -e added to subjob
188	# 19/08/09 - Marcus - MPI debug option
189	# 21/08/09 - Marcus - totalview on hice/bice also available for mvapich2
190	# 25/08/09 - BjornM - adpated for lck
191	# 26/08/09 - Siggi - additional environment variables for mpt on ice2
192	# 26/08/09 - Marcus - adjustment for ice2 on lcsgib
193	# 29/09/09 - Siggi - default value for archiving is false, option "-A"
194	# switches on archiving, archiving on SGI-ICE enabled
195	# 16/10/09 - Carolin- adjustments for archiving on SGI-ICE of binary files;
196	# adjustment for special1q
197	# 18/12/09 - Carolin- modification of archiving (permq)
198	# 01/02/10 - Siggi - adapted for lcxt5m and lckyoto (Fujitsu HX600)
199	# 03/02/10 - Siggi - make options (mopts) to be set by configuration file
200	# implemented
201	# 08/02/10 - Siggi - loading of modules now controlled via configuration
202	# file (modules)
203	# 02/03/10 - Siggi - for each block in the configuration file, separate
204	# utility programs are used, combine_plot_fields is
205	# directly called and must not be given by an output
206	# command in the configuration file any more
207	# 15/06/10 - Rieke - ssh from compute nodes to login nodes on hosts
208	# lcsgih/lcsgib is done using the names
209	# hicegate0/bicegate0 instead of the IP addresses
210	# 17/08/10 - BjornM - adjustments for interactive runs on lcxt4
211	# 07/09/10 - Siggi - bugfix for wrong netcdf/3.6.3 module on lcsgi
212	# 08/12/10 - Siggi - new handling of openmp/hybrid runs, option -O
213	# has now argument threads_per_task
214	# adjustments for Kyushu Univ. (lcrte, ibmku)
215	# 14/12/10 - Siggi - adjustments for new Tsubame system at Tokyo
216	# institute of technology (lctit)
217	# 23/12/10 - Micha - different number of processors in ocean and
218	# atmosphere is now allowed
219	# 02/02/10 - Siggi - further adjustments on Tsubame and concerning openMP
220	# usage
221	# 09/03/10 - Siggi - adjustments for ibmkisti, mpt bugfix for netCDF4
222	# usage, totalview usage extended
223	# 17/03/11 - Siggi - adjustments for openmp usage on ibmkisti
224	# 03/04/11 - Micha - added lckordi
225	# 06/04/11 - BjornM - bugfix for runs with mpt on lcsgi
226	# 17/08/11 - Siggi - extensions for impi library
227	# 18/08/11 - Siggi - bugfix for local append of output files with suffix
228	# (.nc)
229	# 18/08/11 - Marcus - support for Linux OS with German locale
230	# - properly report hosts on general Linux clusters
231	# 29/08/11 - BjornW - adapted for lcflow (ForWind cluster in Oldenburg)
232	# 29/08/11 - Carolin- initiating restart-run: adjustment of the path at
233	# IMUK
234	# 15/09/11 - Siggi - new option -w tp set the maximum number of parallel
235	# io streams, option -T is obligatory from now on
236
237
238	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
239
240	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
241	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
242	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
243
244	AddFilenames=""
245	additional_conditions=""
246	add_source_path=""
247	afname=""
248	archive_save=true
249	archive_system=none
250	compiler_name=""
251	cond1=""
252	cond2=""
253	config_file=.mrun.config
254	coupled_dist=""
255	coupled_mode="mpi1"
256	cpp_opts=""
257	cpp_options=""
258	cpumax=0
259	cpurest=0
260	delete_temporary_catalog=true
261	do_batch=false
262	do_compile=true
263	do_remote=false
264	do_stagein=true
265	do_stageout=true
266	do_trace=false
267	email_notification="none"
268	exclude=""
269	executable=""
270	execution_error=false
271	fimm=false
272	fname=test
273	fromhost=""
274	global_revision=""
275	group_number=none
276	host=""
277	host_file=""
278	hp=""
279	ignore_archive_error=false
280	input_list=""
281	interpreted_config_file=""
282	job_catalog="~/job_queue"
283	job_on_file=""
284	keep_data_from_previous_run=false
285	link_local_input=false
286	link_local_output=false
287	localhost_realname=$(hostname)
288	local_compile=false
289	local_dvrserver_running=.FALSE.
290	locat=normal
291	mainprog=""
292	makefile=""
293	max_par_io_str=""
294	mc=$0
295	while [[ $(echo $mc \| grep -c "/") != 0 ]]
296	do
297	mc=`echo $mc \| cut -f2- -d"/"`
298	done
299	module_calls=""
300	mrun_script_name=$mc
301	netcdf_inc=""
302	netcdf_lib=""
303	netcdf_support=false
304	node_usage=default
305	numprocs=""
306	numprocs_atmos=0
307	numprocs_ocean=0
308	OOPT=""
309	openmp=false
310	output_list=""
311	package_list=""
312	punkte="..........................................................."
313	queue=none
314	read_from_config=""
315	restart_run=false
316	if [[ `hostname` = rte10 ]]
317	then
318	return_addres=133.5.185.60
319	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
320	elif [[ `hostname` = climate0 ]]
321	then
322	return_addres=165.132.26.68
323	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
324	else
325	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
326	fi
327	return_password=""
328	return_username=$LOGNAME
329	remotecall=false
330	remote_username=""
331	run_coupled_model=false
332	run_mode=""
333	scirocco=false
334	store_on_archive_system=false
335	striche=" ----------------------------------------------------------------------------"
336	silent=false
337	source_list=""
338	source_path=SOURCE
339	tasks_per_node=""
340	threads_per_task=1
341	tmpcreate=false
342	tmp_data_catalog=""
343	transfer_problems=false
344	usern=$LOGNAME
345	use_openmp=false
346	working_directory=`pwd`
347	TOPT=""
348	XOPT=""
349	zeit=$( date \| cut -c 12-19 )
350
351	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
352	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
353
354	typeset -R30 calltime
355	typeset -L20 spalte1
356	typeset -L40 spalte2
357	typeset -L60 spalte3
358	typeset -L35 string1=`date`
359	typeset -L12 string2=$usern
360	typeset -L12 string3=$localhost_realname
361	typeset -L12 string4
362	typeset -L12 string5
363	typeset -L30 version="MRUN 2.0 Rev$Rev: 759 $"
364
365
366
367	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
368	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
369
370	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
371	# EXPORTIERT WERDEN
372	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
373	export group_number input_list memory numprocs output_list queue run_mode
374
375
376
377	# FEHLERBEHANDLUNG
378	# BEI EXIT:
379	trap 'rm -rf $working_directory/tmp_mrun
380	if [[ $locat != localhost ]]
381	then
382	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
383	# then
384	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
385	#MRUN-calls on $localhost
386	#
387	#date and time user localhost remotehost termination mrun-command
388	#--------------------------------------------------------------------------------------------------------------------
389	#%STATEND%
390	# chmod 666 ${mrun_path}/statistik/mrun_statistik
391	# fi
392	#
393	# # EINTRAG IN DIE STATISTIK-DATEI
394	# string4=$host
395	# string5=$locat
396	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
397	# then
398	# if [[ $do_batch = true ]]
399	# then
400	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
401	# else
402	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
403	# fi
404	# fi
405	echo " " > /dev/null
406	fi
407
408	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
409	then
410
411	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
412	(( i = 0 ))
413	while (( i < iec ))
414	do
415	(( i = i + 1 ))
416	printf "\n *** Execution of ERROR-command:\n"
417	printf " >>> ${err_command[$i]}\n"
418	eval ${err_command[$i]}
419	done
420	if [[ -n $interpreted_config_file ]] then
421	rm -rf $interpreted_config_file
422	fi
423	if [[ -n .mrun_environment ]] then
424	rm -rf .mrun_environment
425	fi
426	if [[ $tmpcreate = true ]]
427	then
428	printf "\n *** Contents of \"$TEMPDIR\":\n"
429	ls -al; cd
430	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
431	fi
432	if [[ "$dvrserver_id" != "" ]]
433	then
434	echo "+++ killing dvrserver_id=$dvrserver_id"
435	kill $dvrserver_id
436	fi
437	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
438	then
439	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
440	fi
441	printf "\n\n+++ MRUN killed \n\n"
442	elif [[ $locat != control_c ]]
443	then
444	printf "\n\n --> all actions finished\n\n"
445	printf " Bye, bye $usern !!\n\n"
446	fi' exit
447
448
449	# BEI TERMINAL-BREAK:
450	trap 'rm -rf $working_directory/tmp_mrun
451	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
452	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
453	then
454	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
455	fi
456	if [[ "$dvrserver_id" != "" ]]
457	then
458	echo "+++ killing dvrserver_id=$dvrserver_id"
459	kill $dvrserver_id
460	fi
461	printf "\n+++ MRUN killed by \"^C\" \n\n"
462	locat=control_c
463	exit
464	' 2
465
466
467	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
468	# BEEN SET
469	if [[ "$PALM_BIN" = "" ]]
470	then
471	printf "\n +++ environment variable PALM_BIN has not been set"
472	printf "\n please set it to the directory where the PALM scripts are located"
473	locat=palm_bin; exit
474	fi
475	export PATH=$PALM_BIN:$PATH
476
477
478
479	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
480	# FUER FOLGEJOBS BENOETIGT WIRD
481	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vw:xX:yY: option
482	do
483	case $option in
484	(a) afname=$OPTARG;;
485	(A) store_on_archive_system=true; mc="$mc -A";;
486	(b) do_batch=true; mc="$mc -b";;
487	(B) delete_temporary_catalog=false; mc="$mc -B";;
488	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
489	(C) restart_run=true; mc="$mc -C";;
490	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
491	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
492	(F) job_on_file="-D"; mc="$mc -F";;
493	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
494	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
495	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
496	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
497	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
498	(I) ignore_archive_error=true; mc="$mc -I";;
499	(k) keep_data_from_previous_run=true; mc="$mc -k";;
500	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
501	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
502	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
503	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
504	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
505	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
506	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
507	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
508	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
509	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
510	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
511	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
512	(S) read_from_config=false; mc="$mc -S";;
513	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
514	(T) mrun_tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
515	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
516	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
517	(v) silent=true; mc="$mc -v";;
518	(w) max_par_io_str=$OPTARG; mc="$mc -w$OPTARG";;
519	(x) do_trace=true;set -x; mc="$mc -x";;
520	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
521	(y) ocean_file_appendix=true; mc="$mc -y";;
522	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
523	(\?) printf "\n +++ unknown option $OPTARG \n"
524	printf "\n --> type \"$0 ?\" for available options \n"
525	locat=parameter;exit;;
526	esac
527	done
528
529
530	# EVTL. POSITIONSPARAMETER EINLESEN
531	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
532	shift OPTIND-1
533
534
535	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
536	if [[ "$1" = "?" ]]
537	then
538	(printf "\n *** mrun can be called as follows:\n"
539	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. <modus>\n"
540	printf "\n Description of available options:\n"
541	printf "\n Option Description Default-Value"
542	printf "\n -a base name of input files equiv. -d"
543	printf "\n -A archiving when using file-attribute fl"
544	printf "\n -b batch-job on local machine ---"
545	printf "\n -B do not delete temporary directory at end ---"
546	printf "\n -c configuration file .mrun.config"
547	printf "\n -d base name of files attached to program test"
548	printf "\n -D preprocessor(cpp)-directives \"\" "
549	printf "\n -F create remote job file only ---"
550	printf "\n -h execution host $localhost_realname"
551	printf "\n -i INPUT control list \"\" "
552	printf "\n -I archiving errors of previous batch-jobs"
553	printf "\n will be ignored"
554	printf "\n -k keep data from previous run"
555	printf "\n -K additional conditions for controling"
556	printf "\n usage of conditional code and"
557	printf "\n env-variables in configuration file \"\" "
558	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
559	printf "\n -M Makefile name Makefile"
560	printf "\n -n node usage (shared/not_shared) depending on -h"
561	printf "\n -o OUTPUT control list \"\" "
562	printf "\n -O use OpenMP ---"
563	printf "\n -p software package list \"\" "
564	printf "\n -q queue \"$queue\" "
565	printf "\n -r run control list (combines -i -o) \"\" "
566	printf "\n -s filenames of routines to be compiled \"\" "
567	printf "\n must end with .f, .f90, .F, or .c !"
568	printf "\n use \"..\" for more than one file and wildcards"
569	printf "\n -s TEST compiles all files with w-permit"
570	printf "\n -S config file interpreted by shellscript ---"
571	printf "\n -t allowed cpu-time in seconds (batch) 0"
572	printf "\n -T tasks per node depending on -h"
573	printf "\n -u username on remote machine \"\" "
574	printf "\n -v no prompt for confirmation ---"
575	printf "\n -w maximum parallel io streams as given by -X"
576	printf "\n -x tracing of mrun for debug purposes ---"
577	printf "\n -X # of processors (on parallel machines) 1"
578	printf "\n -y add appendix \"_O\" to all local output"
579	printf "\n files (ocean precursor runs followed by"
580	printf "\n coupled atmosphere-ocean runs) ---"
581	printf "\n -Y run coupled model, \"#1 #2\" with"
582	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
583	printf "\n "
584	printf "\n Possible values of positional parameter <modus>:"
585	printf "\n \"?\" - this outline \n\n") \| more
586	exit
587	elif [[ "$1" != "" ]]
588	then
589	printf "\n +++ positional parameter $1 unknown \n"
590	locat=parameter; exit
591	fi
592
593
594
595	# KURZE STARTMELDUNG
596	printf "\n*** $version "
597	printf "\n will be executed. Please wait ..."
598
599
600
601	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
602	if [[ ! -f $config_file ]]
603	then
604	printf "\n\n +++ configuration file: "
605	printf "\n $config_file"
606	printf "\n does not exist"
607	locat=connect; exit
608	fi
609
610
611	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
612	line=""
613	grep "%host_identifier" $config_file > tmp_mrun
614	while read line
615	do
616	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
617	then
618	HOSTNAME=`echo $line \| cut -d" " -s -f2`
619	host_identifier=`echo $line \| cut -d" " -s -f3`
620	if [[ $localhost_realname = $HOSTNAME ]]
621	then
622	localhost=$host_identifier
623	break
624	fi
625	fi
626	done < tmp_mrun
627
628	if [[ "$localhost" = "" ]]
629	then
630	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
631	printf "\n for local host \"$localhost_realname\"."
632	printf "\n Please add line"
633	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
634	printf "\n to the configuration file."
635	locat=localhost; exit
636	fi
637
638
639	# HOSTSPEZIFISCHE VARIABLEN SETZEN
640	case $localhost_realname in
641	(r1\|r2\|h01\|b01) archive_system=tivoli;;
642	(cs*) archive_system=ut;;
643	(fimm.bccs.uib.no) fimm=true;;
644	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
645	(scirocco) scirocco=true;;
646	esac
647
648
649
650	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
651	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
652	[[ "$afname" = "" ]] && afname=$fname
653
654
655	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
656	if [[ "$run_mode" != "" ]]
657	then
658	input_list="$input_list $run_mode"
659	output_list="$output_list $run_mode"
660	fi
661
662
663	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
664	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
665	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
666	# STARTET)
667	if [[ "$fromhost" = "" ]]
668	then
669	fromhost=$localhost
670	fi
671
672
673	# PRUEFEN, OB MRUN NUR TESTWEISE AUF DER LOKALEN MASCHINE KOMPILIEREN SOLL
674	if [[ "$source_list" = LOCAL_COMPILE_TEST ]]
675	then
676	source_list=TEST
677	local_compile=true
678	host=$localhost
679	fi
680
681
682	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
683	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
684	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
685	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
686	if [[ -n $host && "$host" != $localhost ]]
687	then
688	do_batch=true
689	do_remote=true
690	case $host in
691	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|nech\|necriam\|lckyoto\|lcsgib\|lcsgih\|unics\|lcxt4\|lcxt5m\|lck\|lckordi) true;;
692	(*) printf "\n"
693	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
694	printf "\n is not available"
695	locat=nqs; (( iec = 0 )); exit;;
696	esac
697	else
698	host=$localhost
699	fi
700
701
702	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
703	if [[ -n $additional_conditions ]]
704	then
705	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
706	cond1=`echo $additional_conditions \| cut -d" " -f1`
707	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
708	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
709	if [[ -n $dummy ]]
710	then
711	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
712	locat=options; exit
713	fi
714	block=_$cond1
715	[[ -n $cond2 ]] && block=${block}_$cond2
716	fi
717
718
719	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
720	if [[ $run_coupled_model = true ]]
721	then
722
723	if [[ -n $coupled_dist ]]
724	then
725
726	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
727	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
728
729	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
730	then
731
732	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
733	printf "\n PEs (total) : $numprocs"
734	printf "\n PEs (atmosphere): $numprocs_atmos"
735	printf "\n PEs (ocean) : $numprocs_ocean"
736	locat=coupling; exit
737
738	fi
739
740	else
741
742	(( numprocs_ocean = $numprocs / 2 ))
743	(( numprocs_atmos = $numprocs / 2 ))
744
745	fi
746	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
747
748	# GET coupled_mode FROM THE CONFIG FILE
749	line=""
750	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
751	while read line
752	do
753	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && ( $(echo $line \| cut -d" " -s -f4) = $cond1 \|\| $(echo $line \| cut -d" " -s -f4) = $cond2 ) ]]
754	then
755	coupled_mode="mpi2"
756	fi
757	done < tmp_mrun
758
759	fi
760
761
762	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
763	# ARCHIVIERUNG FEHLGESCHLAGEN IST
764	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
765	then
766	if [[ $ignore_archive_error = false ]]
767	then
768	printf "\n +++ data archiving of previous run failed"
769	printf "\n see directory \~/job_queue on remote machine"
770	locat=archive; exit
771	else
772	printf "\n +++ warning: data archiving in a previous run failed"
773	printf "\n MRUN continues, trying to get backup copy"
774	fi
775	fi
776
777
778
779	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
780	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
781	if [[ "$read_from_config" = false ]]
782	then
783
784	[[ $silent = false ]] && printf "\n Reading the configuration file... "
785	while read zeile
786	do
787	[[ $silent = false ]] && printf "."
788
789
790	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
791	# ERSETZEN
792	eval zeile=\"$zeile\"
793
794
795	# INTERPRETATION DER ZEILE
796	if [[ "$(echo $zeile)" = "" ]]
797	then
798	# LEERZEILE, KEINE AKTION
799	continue
800
801	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
802	then
803
804	# ZEILE IST KOMMENTARZEILE
805	true
806
807	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
808	then
809
810	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
811	zeile=$(echo $zeile \| cut -c2-)
812	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
813	var=`echo $zeile \| cut -d" " -f1`
814	value=`echo $zeile \| cut -d" " -s -f2`
815	for_host=`echo $zeile \| cut -d" " -s -f3`
816	for_cond1=`echo $zeile \| cut -d" " -s -f4`
817	for_cond2=`echo $zeile \| cut -d" " -s -f5`
818
819	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
820	then
821
822	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
823	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
824	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
825
826
827	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
828	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
829	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
830	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
831	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
832	# KONFIGURATIONSDATEI
833	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
834	then
835	eval $var=\$value
836
837	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
838	if [[ $do_trace = true ]]
839	then
840	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
841	fi
842	fi
843
844	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
845	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
846	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
847	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
848	if [[ $var = host ]]
849	then
850	if [[ -n $host && "$host" != $localhost ]]
851	then
852	do_batch=true
853	do_remote=true
854	case $host in
855	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxt4\|lcxt5m\|lck\|lckordi) true;;
856	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
857	printf "\n is not available"
858	locat=nqs; exit;;
859	esac
860	else
861	host=$localhost
862	fi
863	fi
864
865	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
866	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
867	# DEN PROGRAMMEN BENOETIGT WERDEN
868	export $var
869	fi
870
871
872
873
874	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
875	then
876
877	# ZEILE DEFINIERT ERROR-KOMMANDO
878	(( iec = iec + 1 ))
879	zeile=$(echo $zeile \| cut -c4-)
880	err_command[$iec]="$zeile"
881
882	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
883	then
884
885	# ZEILE DEFINIERT INPUT-KOMMANDO
886	(( iic = iic + 1 ))
887	zeile=$(echo $zeile \| cut -c4-)
888	in_command[$iic]="$zeile"
889
890	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
891	then
892
893	# ZEILE DEFINIERT OUTPUT-KOMMANDO
894	(( ioc = ioc + 1 ))
895	zeile=$(echo $zeile \| cut -c4-)
896	out_command[$ioc]="$zeile"
897
898	else
899
900	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
901	# s2a: in/out - Feld
902	# s2b: loc - Feld (optional)
903	# s2c: tr/ar - Feld (optional)
904	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
905	s1=`echo $zeile \| cut -d" " -f1`
906	s2=`echo $zeile \| cut -d" " -s -f2`
907	s2a=$(echo $s2 \| cut -d":" -f1)
908	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
909	then
910	s2b=""
911	s2c=""
912	else
913	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
914	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
915	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
916	fi
917	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
918	s3=`echo $zeile \| cut -d" " -f3`
919	s4=`echo $zeile \| cut -d" " -s -f4`
920	s5=`echo $zeile \| cut -d" " -s -f5`
921	s6=`echo $zeile \| cut -d" " -s -f6`
922
923
924	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
925	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
926	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
927	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
928	# HANDEN SEIN MUSS (D.H. s2b = loc)
929	IFSALT="$IFS"; IFS="$IFS:"
930	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
931	then
932	found=false
933	for actual in $input_list
934	do
935	for formal in $s3
936	do
937	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
938	done
939	done
940	if [[ $found = true ]]
941	then
942	(( iin = iin + 1 ))
943	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
944	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
945	extin[$iin]=$s6
946	fi
947	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
948	then
949	found=false
950	for actual in $output_list
951	do
952	for formal in $s3
953	do
954	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
955	done
956	done
957	if [[ $found = true ]]
958	then
959	(( iout = iout + 1 ))
960	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
961	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
962	fi
963	elif [[ "$s2a" != in && "$s2a" != out ]]
964	then
965	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
966	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
967	locat=connect; exit
968	fi
969	IFS="$IFSALT"
970	fi
971	done < $config_file
972
973	else
974
975
976	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
977	[[ $silent = false ]] && printf "..."
978	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
979	export interpreted_config_file=.icf.$RANDOM
980
981
982
983	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
984	# VERFUEGUNG STELLEN
985	cat > .mrun_environment << %%END%%
986	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
987	config_file = '$config_file', do_remote = '$do_remote',
988	do_trace = '$do_trace', host = '$host',
989	input_list = '$input_list', icf = '$interpreted_config_file',
990	localhost = '$localhost', output_list = '$output_list' /
991
992	%%END%%
993
994	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
995	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
996	mrun_memory=$memory
997	mrun_group_number=$group_number
998	mrun_cpumax=$cpumax
999	mrun_numprocs=$numprocs
1000
1001	if [[ $localhost_realname = "sx-fep" ]]
1002	then
1003	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
1004	else
1005
1006	if [[ "$host" != $localhost ]]
1007	then
1008
1009	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
1010	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
1011	if [[ $? != 0 ]]
1012	then
1013	printf "\n\n +++ no interpret_config found"
1014	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
1015	locat=interpret_config; exit
1016	fi
1017	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
1018	$interpret_config_executable
1019
1020	else
1021
1022	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
1023	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
1024	then
1025	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
1026	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
1027	locat=interpret_config; exit
1028	else
1029	interpret_config${block}.x
1030	fi
1031
1032	fi
1033	fi
1034	rm .mrun_environment
1035
1036
1037	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
1038	chmod u+x $interpreted_config_file
1039	export PATH=$PATH:.
1040	. $interpreted_config_file
1041	rm $interpreted_config_file
1042
1043
1044	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
1045	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
1046	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
1047	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
1048	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
1049	[[ "$max_par_io_str" != "" ]] && maximum_parallel_io_streams=$max_par_io_str
1050	[[ "$mrun_tasks_per_node" != "" ]] && tasks_per_node=$mrun_tasks_per_node
1051
1052	fi
1053
1054
1055	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
1056	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
1057	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
1058	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
1059	if [[ "$SOURCES_COMPLETE" = "" ]]
1060	then
1061
1062	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
1063	# VEREINBART WURDE
1064	source_path=""
1065	line=""
1066	grep "%source_path" $config_file > tmp_mrun
1067	while read line
1068	do
1069	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1070	then
1071	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
1072	then
1073	global_source_path=`echo $line \| cut -d" " -f2`
1074	fi
1075	fi
1076	done < tmp_mrun
1077
1078	line=""
1079	found=false
1080	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
1081	while read line
1082	do
1083	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1084	then
1085	if [[ $found = true ]]
1086	then
1087	printf "\n\n +++ more than one source path found in configuration file"
1088	printf "\n for local host \"$localhost\" "
1089	locat=source_path; exit
1090	fi
1091	source_path=`echo $line \| cut -d" " -f2`
1092	found=true
1093	fi
1094	done < tmp_mrun
1095	rm tmp_mrun
1096
1097	if [[ "$source_path" = "" ]]
1098	then
1099	if [[ "$global_source_path" != "" ]]
1100	then
1101	source_path=$global_source_path
1102	else
1103	printf "\n\n +++ no source path found in configuration file"
1104	printf "\n for local host \"$localhost\" "
1105	locat=source_path; exit
1106	fi
1107	fi
1108	eval source_path=$source_path
1109
1110	if [[ ! -d $source_path ]]
1111	then
1112	printf "\n\n +++ source path \"$source_path\" on local host"
1113	printf "\n \"$localhost\" does not exist"
1114	locat=source_path; exit
1115	fi
1116
1117	fi
1118
1119
1120	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
1121	# DURCH OPTION -G MITGETEILT)
1122	if [[ "$global_revision" = "" && $host != "ibmkisti" ]]
1123	then
1124	global_revision=`svnversion $source_path 2>/dev/null`
1125	global_revision="Rev: $global_revision"
1126	fi
1127
1128
1129	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
1130	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
1131	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
1132	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
1133	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
1134	if [[ -n $host && "$host" != $localhost ]]
1135	then
1136	do_batch=true
1137	do_remote=true
1138	case $host in
1139	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxt4\|lcxt5m\|lck\|lckordi) true;;
1140	(*) printf "\n"
1141	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
1142	printf "\n is not available"
1143	locat=nqs; (( iec = 0 )); exit;;
1144	esac
1145	else
1146	host=$localhost
1147	fi
1148
1149
1150	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
1151	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1152	then
1153
1154	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
1155	if [[ ! -n $numprocs ]]
1156	then
1157	printf "\n"
1158	printf "\n +++ option \"-K parallel\" requires additional specification"
1159	printf "\n of the number of processors to be used by"
1160	printf "\n mrun-option \"-X\" or by environment-variable"
1161	printf "\n \"numprocs\" in the configuration file"
1162	locat=numprocs; (( iec = 0 )); exit
1163	fi
1164
1165	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
1166	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
1167	# GESAMTPROZESSORANZAHL IST
1168	if [[ "$tasks_per_node" = "" ]]
1169	then
1170	printf "\n"
1171	printf "\n +++ option \"-T\" (tasks per node) is missing"
1172	printf "\n set -T option or define tasks_per_node in the config file"
1173	locat=tasks_per_node; (( iec = 0 )); exit
1174	fi
1175	(( ival = $tasks_per_node ))
1176	(( pes = numprocs ))
1177	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1178	# then
1179	# (( pes = pes - 1 ))
1180	# fi
1181	(( ii = pes / ival ))
1182	if (( pes - ii * ival > 0 ))
1183	then
1184	printf "\n"
1185	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1186	printf "\n divisor of the total number of processors (option \"-X\")"
1187	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1188	locat=tasks_per_node; (( iec = 0 )); exit
1189	fi
1190
1191
1192	# IBMY HAT NUR EINEN KNOTEN
1193	if [[ $host = ibmy ]]
1194	then
1195	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1196	then
1197	printf "\n"
1198	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1199	printf "\n total number of processors (option \"-X\")"
1200	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1201	locat=tasks_per_node; (( iec = 0 )); exit
1202	fi
1203	fi
1204
1205
1206	# SETTINGS FOR SUBJOB-COMMAND
1207	TOPT="-T $tasks_per_node"
1208	OOPT="-O $threads_per_task"
1209
1210	# GESAMTZAHL DER KNOTEN BESTIMMEN
1211	if [[ "$tasks_per_node" != "" ]]
1212	then
1213	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1214	fi
1215
1216	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1217	# SETZEN
1218	if [[ $node_usage = default ]]
1219	then
1220	if [[ $host = ibms ]]
1221	then
1222	node_usage=shared
1223	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1224	then
1225	node_usage=singlejob
1226	else
1227	node_usage=not_shared
1228	fi
1229	fi
1230
1231	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
1232	then
1233	printf "\n"
1234	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1235	printf "\n \"shared\" or \"not_shared\""
1236	locat=tasks_per_node; (( iec = 0 )); exit
1237	fi
1238
1239	fi
1240
1241	# PRUEFEN, OB HOSTFILE EXISTIERT
1242	if [[ -n $hostfile ]]
1243	then
1244	if [[ ! -f $hostfile ]]
1245	then
1246	printf "\n"
1247	printf "\n +++ hostfile \"$hostfile\" does not exist"
1248	locat=hostfile; exit
1249	fi
1250	fi
1251
1252	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1253	if [[ $host = ibmy && $do_remote = false ]]
1254	then
1255	if [[ ! -f $HOME/.rhosts ]]
1256	then
1257	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1258	printf "\n\n *** file:"
1259	printf "\n $HOME/.rhosts"
1260	printf "\n was created\n"
1261	fi
1262	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1263	then
1264	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1265	printf "\n\n *** file:"
1266	printf "\n $HOME/.rhosts"
1267	printf "\n was extended by the name of the current host\n"
1268	fi
1269	fi
1270
1271
1272	# Set default value for the maximum number of parallel io streams
1273	if [[ "$maximum_parallel_io_streams" = "" ]]
1274	then
1275	maximum_parallel_io_streams=$numprocs
1276	fi
1277
1278
1279	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1280	if [[ $queue = none ]]
1281	then
1282	case $host in
1283	(ibmh) queue=no_class;;
1284	(ibmkisti) queue=class.32plus;;
1285	(ibmy) queue=parallel;;
1286	(lckyoto) queue=ph;;
1287	(lcsgib) queue=bigq;;
1288	(lcsgih) queue=bigq;;
1289	(lctit) queue=S;;
1290	(nech) queue=none;;
1291	(necriam) queue=SP;;
1292	(unics) queue=unics;;
1293	esac
1294	fi
1295
1296
1297	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1298	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1299	# ERMITTELN
1300	(( i = 0 ))
1301	while (( i < iin ))
1302	do
1303	(( i = i + 1 ))
1304	(( maxcycle = 0 ))
1305
1306	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1307	if [[ "${actionin[$i]}" = di ]]
1308	then
1309	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1310	# REM-MASCHINE AUSWERTEN
1311	eval filename=${pathin[$i]}/${endin[$i]}
1312	else
1313	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1314	# REM-MASCHINE AUSWERTEN
1315	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1316	fi
1317
1318	# PRUEFEN AUF VORHANDENSEIN
1319	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1320	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1321	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1322	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1323	then
1324	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1325	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1326	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1327	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1328	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1329	if [[ "${transin[$i]}" != "locopt" ]]
1330	then
1331	printf "\n\n +++ INPUT-file: "
1332	if [[ "${extin[$i]}" = "" ]]
1333	then
1334	printf "\n $filename"
1335	else
1336	printf "\n $filename.${extin[$i]}"
1337	fi
1338	printf "\n does not exist\n"
1339	locat=input; exit
1340	else
1341	transin[$i]="unavailable"
1342	fi
1343	else
1344
1345	# ZYKLUSNUMMER FESTSTELLEN
1346	ls -1 -d $filename > filelist 2>/dev/null
1347	ls -1 -d $filename.* >> filelist 2>/dev/null
1348	while read zeile
1349	do
1350	cycle=$(print $zeile \| cut -f2 -d".")
1351	if [[ "$cycle" = "$zeile" ]]
1352	then
1353	(( icycle = 0 ))
1354	elif [[ "$cycle" = "${extin[$i]}" ]]
1355	then
1356	(( icycle = 0 ))
1357	else
1358	(( icycle = $cycle ))
1359	fi
1360	if (( icycle > maxcycle ))
1361	then
1362	(( maxcycle = icycle ))
1363	file_to_be_used=$zeile
1364	fi
1365	done <filelist
1366	rm filelist
1367
1368	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1369	if (( maxcycle > 0 ))
1370	then
1371	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1372	then
1373	filename=${filename}.$maxcycle.${extin[$i]}
1374	else
1375	filename=${filename}.$maxcycle
1376	fi
1377	else
1378	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1379	then
1380	filename=${filename}.${extin[$i]}
1381	fi
1382	fi
1383
1384	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1385	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1386	absnamein[$i]=$filename
1387	if (( maxcycle > 0 ))
1388	then
1389	if [[ "${actionin[$i]}" = di ]]
1390	then
1391	frelin[$i]=${endin[$i]}.$maxcycle
1392	else
1393	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1394	fi
1395	else
1396	if [[ "${actionin[$i]}" = di ]]
1397	then
1398	frelin[$i]=${endin[$i]}
1399	else
1400	frelin[$i]=${afname}${endin[$i]}
1401	fi
1402	fi
1403
1404	fi
1405	done
1406
1407
1408	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1409	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1410	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1411	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1412	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1413	(( i = 0 ))
1414	while (( i < iout ))
1415	do
1416	(( i = i + 1 ))
1417	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1418	then
1419	if [[ "${actionout[$i]}" = tr ]]
1420	then
1421	actionout[$i]=""
1422	elif [[ "${actionout[$i]}" = trpe ]]
1423	then
1424	actionout[$i]=pe
1425	elif [[ "${actionout[$i]}" = tra ]]
1426	then
1427	actionout[$i]=a
1428	fi
1429	(( maxcycle = 0 ))
1430	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1431	eval catalogname=${pathout[$i]}
1432	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1433	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1434	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1435	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1436	then
1437
1438	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1439	if cat /dev/null > $filename
1440	then
1441	rm $filename
1442	else
1443
1444	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1445	if [[ ! -d $catalogname ]]
1446	then
1447	if mkdir -p $catalogname
1448	then
1449	printf "\n\n *** directory:"
1450	printf "\n $catalogname"
1451	printf "\n was created\n"
1452	else
1453	printf "\n\n +++ OUTPUT-file:"
1454	printf "\n $filename"
1455	printf "\n cannot be created, because directory does not exist"
1456	printf "\n and cannot be created either"
1457	printf "\n"
1458	locat=output ; exit
1459	fi 2>/dev/null
1460	else
1461	printf "\n\n +++ OUTPUT-file:"
1462	printf "\n $filename"
1463	printf "\n cannot be created, although directory exists"
1464	printf "\n"
1465	locat=output ; exit
1466	fi
1467	fi 2>/dev/null
1468	else
1469
1470	# ZYKLUSNUMMER FESTSTELLEN
1471	ls -1 -d $filename > filelist 2>/dev/null
1472	ls -1 -d $filename.* >> filelist 2>/dev/null
1473	while read zeile
1474	do
1475	cycle=$(print $zeile \| cut -f2 -d".")
1476	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1477	then
1478	(( icycle = 1 ))
1479	else
1480	(( icycle = $cycle + 1 ))
1481	fi
1482	if (( icycle > maxcycle ))
1483	then
1484	(( maxcycle = icycle ))
1485	fi
1486	done <filelist
1487	rm filelist
1488	fi
1489
1490	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1491	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1492	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1493	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1494	if [[ "${actionout[$i]}" != a ]]
1495	then
1496	if (( maxcycle > 0 ))
1497	then
1498	filename=${filename}.$maxcycle
1499	if cat /dev/null > $filename
1500	then
1501	rm $filename
1502	else
1503	printf "\n +++ OUTPUT-file:"
1504	printf "\n $filename"
1505	printf "\n cannot be created"
1506	locat=output ; exit
1507	fi
1508	fi
1509	else
1510	(( maxcycle = maxcycle - 1 ))
1511	if (( maxcycle > 0 ))
1512	then
1513	filename=${filename}.$maxcycle
1514	fi
1515	fi
1516
1517	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1518	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1519	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1520	pathout[$i]=$filename
1521	if (( maxcycle > 0 ))
1522	then
1523	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1524	else
1525	frelout[$i]=${fname}${endout[$i]}
1526	fi
1527
1528	fi
1529	done
1530
1531
1532	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1533	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1534	then
1535	if [[ "$dvr_inc" = "" ]]
1536	then
1537	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1538	printf "\n This is required for the dvrp_graphics package.\n"
1539	locat=dvr; exit
1540	fi
1541	if [[ "$dvr_lib" = "" ]]
1542	then
1543	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1544	printf "\n This is required for the dvrp_graphics package.\n"
1545	locat=dvr; exit
1546	fi
1547	fi
1548
1549
1550	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1551	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1552	# UEBERSETZT ZU WERDEN)
1553	if [[ "$mainprog" = "" && "$executable" = "" ]]
1554	then
1555	printf "\n +++ neither main program nor executable defined"
1556	locat=source; exit
1557	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1558	then
1559	printf "\n +++ main program as well as executable defined"
1560	locat=source; exit
1561	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1562	then
1563	do_compile=false
1564	fi
1565
1566
1567	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1568	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1569	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1570	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1571	then
1572	rm -rf SOURCES_FOR_RUN_$fname
1573	mkdir SOURCES_FOR_RUN_$fname
1574	fi
1575
1576
1577	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1578	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1579	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1580	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1581	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1582	then
1583
1584	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1585	[[ "$source_list" = WP ]] && source_list=WRITE_PERMIT
1586
1587
1588	# EVTL. ZU UEBERSETZENDE PROGRAMMTEILE DADURCH BESTIMMEN, DASS GEPRUEFT
1589	# WIRD, WELCHE DATEIEN WRITE-PERMIT BESITZEN (DATEIEN SOLLTEN DESHALB
1590	# UNTER RCS-KONTROLLE STEHEN). MIT DER VARIABLEN EXCLUDE KOENNEN
1591	# BESTIMMTE DATEIEN GRUNDSAETZLICH VON DER UEBERSETZUNG AUSGESCHLOSSEN
1592	# WERDEN. DIES IST NUR BEI MANUELLEM START VON MRUN DURCH DEN BENUTZER
1593	# MOEGLICH, DA BEI AUTOMATISCHEN RESTARTS TEST DURCH DIE TATSAECHLICH
1594	# ZU UBERSETZENDEN DATEIEN ERSETZT IST.
1595	# ALLE ERMITTELTEN DATEIEN WERDEN IM VERZEICHNIS SOURCES_FOR_RUN_...
1596	# GESAMMELT
1597	if [[ "$source_list" = WRITE_PERMIT ]]
1598	then
1599
1600	source_list=""
1601	cd $source_path
1602
1603
1604	# ALLE MOEGLICHEN QUELLCODEDATEIEN AUFLISTEN
1605	Names=$(ls -1 *.f90 2>&1)
1606	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && Filenames="$Names"
1607	Names=$(ls -1 *.F90 2>&1)
1608	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && Filenames="$Filenames $Names"
1609	Names=$(ls -1 *.F 2>&1)
1610	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && Filenames="$Filenames $Names"
1611	Names=$(ls -1 *.f 2>&1)
1612	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && Filenames="$Filenames $Names"
1613	Names=$(ls -1 *.c 2>&1)
1614	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && Filenames="$Filenames $Names"
1615
1616
1617	# DATEIEN MIT WRITE-PERMIT NACH SOURCES_FOR_RUN_... KOPIEREN
1618	for dateiname in $Filenames
1619	do
1620	if [[ -w $dateiname ]]
1621	then
1622	if [[ "$exclude" = "" \|\| $(echo $exclude \| grep -c $dateiname) = 0 ]]
1623	then
1624	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1625	source_list=$source_list"$dateiname "
1626	fi
1627	fi
1628	done
1629
1630	cd - > /dev/null
1631
1632
1633	elif [[ "$source_list" = LOCALLY_MODIFIED ]]
1634	then
1635
1636	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1637	source_list=""
1638	cd $source_path
1639
1640
1641	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1642	if [[ ! -d .svn ]]
1643	then
1644	printf "\n\n +++ source directory"
1645	printf "\n \"$source_path\" "
1646	printf "\n is not under control of \"subversion\"."
1647	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1648	fi
1649
1650
1651	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1652	Filenames=""
1653	svn status > tmp_mrun
1654	while read line
1655	do
1656	firstc=`echo $line \| cut -c1`
1657	if [[ $firstc = M \|\| $firstc = "?" ]]
1658	then
1659	Name=`echo "$line" \| cut -c8-`
1660	extension=`echo $Name \| cut -d. -f2`
1661	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1662	then
1663	Filenames="$Filenames "$Name
1664	fi
1665	fi
1666	done < tmp_mrun
1667
1668
1669	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1670	for dateiname in $Filenames
1671	do
1672	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1673	source_list=$source_list"$dateiname "
1674	done
1675
1676	cd - > /dev/null
1677
1678
1679	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1680	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1681	# VORHANDEN
1682	elif [[ "$source_list" != "" && $restart_run != true ]]
1683	then
1684
1685	cd $source_path
1686
1687	for filename in $source_list
1688	do
1689
1690	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1691	if [[ $(print $filename \| grep -c "/") != 0 ]]
1692	then
1693	printf "\n +++ source code file: $filename"
1694	printf "\n must not contain (\"/\") "
1695	locat=source; exit
1696	fi
1697
1698	if [[ ! -f $filename ]]
1699	then
1700	printf "\n +++ source code file: $filename"
1701	printf "\n does not exist"
1702	locat=source; exit
1703	else
1704	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1705	fi
1706
1707	done
1708
1709	cd - > /dev/null
1710
1711	fi
1712
1713
1714	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1715	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1716	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1717	if [[ $restart_run != true ]]
1718	then
1719
1720	if [[ ! -f "$source_path/$mainprog" ]]
1721	then
1722	printf "\n\n +++ main program: $mainprog"
1723	printf "\n does not exist in source directory"
1724	printf "\n \"$source_path\"\n"
1725	locat=source; exit
1726	else
1727	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1728	then
1729	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1730	source_list=${mainprog}" $source_list"
1731	fi
1732	fi
1733	fi
1734
1735
1736	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1737	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1738	if [[ "$restart_run" != true ]]
1739	then
1740	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1741	if [[ ! -f $makefile ]]
1742	then
1743	printf "\n +++ file \"$makefile\" does not exist"
1744	locat=make; exit
1745	else
1746	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1747	fi
1748	fi
1749
1750
1751	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1752	if [[ $restart_run != true && "$add_source_path" != "" ]]
1753	then
1754
1755	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1756	if [[ ! -d $add_source_path ]]
1757	then
1758	printf "\n\n +++ WARNING: additional source code directory"
1759	printf "\n \"$add_source_path\" "
1760	printf "\n does not exist or is not a directory."
1761	printf "\n No source code will be used from this directory!\n"
1762	add_source_path=""
1763	sleep 3
1764	else
1765
1766	cd $add_source_path
1767	found=false
1768
1769	Names=$(ls -1 *.f90 2>&1)
1770	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1771	Names=$(ls -1 *.F90 2>&1)
1772	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1773	Names=$(ls -1 *.F 2>&1)
1774	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1775	Names=$(ls -1 *.f 2>&1)
1776	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1777	Names=$(ls -1 *.c 2>&1)
1778	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1779
1780	cd - > /dev/null
1781	cd SOURCES_FOR_RUN_$fname
1782
1783	# COPY MAKEFILE IF EXISTING
1784	if [[ -f $add_source_path/Makefile ]]
1785	then
1786	printf "\n\n *** user Makefile from directory"
1787	printf "\n \"$add_source_path\" is used \n"
1788	sleep 1
1789	cp $add_source_path/Makefile .
1790	fi
1791
1792	for dateiname in $AddFilenames
1793	do
1794	if [[ -f $dateiname ]]
1795	then
1796	printf "\n +++ source code file \"$dateiname\" found in additional"
1797	printf "\n source code directory \"$add_source_path\" "
1798	printf "\n but was also given with option \"-s\" which means that it should be taken"
1799	printf "\n from directory \"$source_path\"."
1800	locat=source; exit
1801	fi
1802
1803	cp $add_source_path/$dateiname .
1804	source_list="$source_list $dateiname"
1805
1806	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1807	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1808	then
1809	printf "\n\n +++ user file \"$dateiname\" "
1810	printf "\n is not listed in Makefile \n"
1811	locat=source; exit
1812	else
1813
1814	# Default User-Interface von der Liste entfernen, falls Datei
1815	# ein User-Interface enthaelt
1816	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1817	# then
1818	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1819	# then
1820	# rm -rf user_interface.f90
1821	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1822	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1823	# printf "\n since a user-interface is found in file"
1824	# printf "\n \"$add_source_path/$dateiname\" \n"
1825	# sleep 3
1826	# else
1827	if [[ $found = false ]]
1828	then
1829	found=true
1830	printf "\n\n *** following user file(s) added to the"
1831	printf " files to be translated:\n "
1832	fi
1833	printf "$dateiname "
1834	sleep 0.5
1835	fi
1836	done
1837	[[ $found = true ]] && printf "\n"
1838	cd - > /dev/null
1839	fi
1840	fi
1841
1842
1843	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1844	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1845	if [[ $restart_run != true && -n $package_list ]]
1846	then
1847
1848	cd $source_path
1849
1850	for package in $package_list
1851	do
1852
1853	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1854
1855	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1856	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1857	# LIEFERT
1858	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1859
1860
1861	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1862	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1863	for source_list_name in $package_source_list
1864	do
1865	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1866	then
1867
1868	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1869	ending=`echo $source_list_name \| cut -f2 -d.`
1870	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1871	then
1872	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1873	source_list="$source_list $source_list_name"
1874	fi
1875	fi
1876	done
1877	done
1878
1879	cd - > /dev/null
1880	fi
1881
1882
1883	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1884	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1885	# if [[ "$restart_run" != true ]]
1886	# then
1887	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1888	# if [[ ! -f $makefile ]]
1889	# then
1890	# printf "\n +++ file \"$makefile\" does not exist"
1891	# locat=make; exit
1892	# else
1893	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1894	# fi
1895	# fi
1896
1897	fi # do_compile=true
1898
1899
1900	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1901	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1902	if [[ $do_compile = true ]]
1903	then
1904
1905	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1906	# ZUSAMMENSETZEN
1907	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1908	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1909	then
1910	cpp_options="${cpp_options},-D__ibm=__ibm"
1911	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1912	then
1913	cpp_options="$cpp_options -D__nec"
1914	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1915	then
1916	cpp_options="$cpp_options -D__lc"
1917	else
1918	cpp_options="$cpp_options -D__$localhost"
1919	fi
1920
1921	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1922	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1923	then
1924	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1925	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1926	else
1927	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1928	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1929	fi
1930
1931	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1932	if [[ -n $package_list ]]
1933	then
1934	for package in $package_list
1935	do
1936	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1937	then
1938	if [[ $package != "dvrp_graphics+1PE" ]]
1939	then
1940	cpp_options="${cpp_options},-D__$package=__$package"
1941	else
1942	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1943	export use_seperate_pe_for_dvrp_output=true
1944	fi
1945	else
1946	if [[ $package != "dvrp_graphics+1PE" ]]
1947	then
1948	cpp_options="$cpp_options -D__$package"
1949	else
1950	cpp_options="$cpp_options -D__dvrp_graphics"
1951	export use_seperate_pe_for_dvrp_output=true
1952	fi
1953	fi
1954	done
1955	fi
1956
1957	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1958	if [[ -n $cpp_opts ]]
1959	then
1960	for popts in $cpp_opts
1961	do
1962	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1963	then
1964	cpp_options="${cpp_options},-D__$popts=__$popts"
1965	else
1966	cpp_options="$cpp_options -D__$popts"
1967	fi
1968	done
1969	fi
1970
1971	else
1972
1973
1974	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1975	if [[ $do_remote = false ]]
1976	then
1977	if [[ ! -f $executable ]]
1978	then
1979	printf "\n +++ executable file: $executable"
1980	printf "\n does not exist"
1981	locat=executable; exit
1982	fi
1983	fi
1984	fi
1985
1986
1987	# JOBMODUS FESTSTELLEN
1988	if [[ "$ENVIRONMENT" = BATCH ]]
1989	then
1990	jobmo=BATCH
1991	else
1992	jobmo=INTERACTIVE
1993	fi
1994
1995
1996	# no interactive runs on lctit
1997	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
1998	then
1999	printf "\n +++ no interactive runs allowed on host \"$host\" "
2000	printf "\n please submit batch job using mrun option \"-b\" \n"
2001	locat=normal; exit
2002	fi
2003
2004
2005	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
2006	# DURCH BENUTZER ANDERWEITIG VEREINBART
2007	if [[ "$compiler_name" = "" ]]
2008	then
2009
2010	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
2011	locat=compiler_name; exit
2012
2013	fi
2014
2015
2016	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
2017	[[ $localhost = necriam ]] && compiler_name=mpif90
2018
2019
2020
2021	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
2022	kennung=$RANDOM
2023	if [[ "$tmp_user_catalog" = "" ]]
2024	then
2025	if [[ $localhost = ibmh ]]
2026	then
2027	tmp_user_catalog=$SCRATCH
2028	elif [[ $localhost = nech ]]
2029	then
2030	tmp_user_catalog=$WRKSHR
2031	else
2032	tmp_user_catalog=/tmp
2033	fi
2034	fi
2035	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
2036
2037
2038	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
2039	# BESTIMMEN
2040	if [[ "$tmp_data_catalog" = "" ]]
2041	then
2042	if [[ $localhost = nech ]]
2043	then
2044	tmp_data_catalog=$WRKSHR/mrun_restart_data
2045	else
2046	tmp_data_catalog=/tmp/mrun_restart_data
2047	fi
2048	fi
2049
2050
2051	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
2052	# ERSETZEN
2053	if [[ $do_remote = false && $do_compile = true ]]
2054	then
2055	eval fopts=\"$fopts\"
2056	eval lopts=\"$lopts\"
2057	fi
2058
2059
2060
2061	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
2062	fopts="$fopts $netcdf_inc $dvr_inc"
2063	lopts="$lopts $netcdf_lib $dvr_lib"
2064	ROPTS="$ropts"
2065	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxt4 \|\| $host = lcxt5m \|\| $host = lck \|\| $host = lckordi) && -n $numprocs ]]
2066	then
2067	XOPT="-X $numprocs"
2068	fi
2069
2070
2071
2072	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
2073	# GRAMM BENOETIGT
2074	done=false
2075	while [[ $done = false ]]
2076	do
2077	cputime=$cpumax
2078	if (( $cputime == 0 ))
2079	then
2080	if [[ $do_batch = true ]]
2081	then
2082	printf "\n +++ cpu-time is undefined"
2083	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
2084	printf "\n >>> "
2085	read cputime 1>/dev/null 2>&1
2086	else
2087	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
2088	fi
2089	else
2090	done=true
2091	fi
2092	cpumax=$cputime
2093	done
2094
2095	(( minuten = cputime / 60 ))
2096	(( sekunden = cputime - minuten * 60 ))
2097
2098
2099	# PRUEFEN DER KERNSPEICHERANFORDERUNG
2100	if [[ $do_batch = true ]]
2101	then
2102	done=false
2103	while [[ $done = false ]]
2104	do
2105	if (( memory == 0 ))
2106	then
2107	printf "\n +++ memory demand is undefined"
2108	printf "\n >>> Please type memory in MByte per process as INTEGER:"
2109	printf "\n >>> "
2110	read memory 1>/dev/null 2>&1
2111	else
2112	done=true
2113	fi
2114	done
2115	fi
2116
2117
2118	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
2119	if [[ $do_remote = true && -z $remote_username ]]
2120	then
2121	while [[ -z $remote_username ]]
2122	do
2123	printf "\n +++ username on remote host \"$host\" is undefined"
2124	printf "\n >>> Please type username:"
2125	printf "\n >>> "
2126	read remote_username
2127	done
2128	mc="$mc -u$remote_username"
2129	fi
2130
2131
2132	# set module load command and export for subjob
2133	if [[ "$modules" != "" ]]
2134	then
2135	if [[ $host = lctit ]]
2136	then
2137	export module_calls=". $modules"
2138	else
2139	export module_calls="module load ${modules};"
2140	fi
2141	fi
2142
2143	# bugfix for wrong netcdf module and for netCDF4 usage in case of mpt
2144	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2145	then
2146	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
2147	then
2148	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
2149	fi
2150	# if [[ $(echo $module_calls \| grep -c mpt) != 0 ]]
2151	# then
2152	# export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/sgi/mpt/2011-02-07/lib:\$LD_LIBRARY_PATH;"
2153	# echo "*** module_calls = $module_calls"
2154	# fi
2155	fi
2156
2157
2158	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
2159	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2160	then
2161	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
2162	then
2163	mpilib=mpt
2164	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
2165	then
2166	mpilib=mvapich
2167	elif [[ $(echo $modules \| grep -c impi ) != 0 ]]
2168	then
2169	mpilib=impi
2170	fi
2171	fi
2172
2173
2174
2175	###########################################################################
2176	# HEADER-AUSGABE
2177	###########################################################################
2178
2179
2180	calltime=$(date)
2181	printf "\n"
2182	# [[ $silent = false ]] && clear
2183	printf "#--------------------------------------------------------------# \n"
2184	printf "\| $version$calltime \| \n"
2185	printf "\| \| \n"
2186	spalte1="called on:"; spalte2=$localhost_realname
2187	printf "\| $spalte1$spalte2 \| \n"
2188	if [[ $local_compile = false ]]
2189	then
2190	if [[ $do_remote = true ]]
2191	then
2192	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2193	else
2194	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2195	fi
2196	else
2197	spalte1="compiling test only!"; spalte2=""
2198	fi
2199	printf "\| $spalte1$spalte2 \| \n"
2200	if [[ -n $numprocs ]]
2201	then
2202	spalte1="number of PEs:"; spalte2=$numprocs
2203	printf "\| $spalte1$spalte2 \| \n"
2204	fi
2205	if [[ -n $tasks_per_node ]]
2206	then
2207	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2208	printf "\| $spalte1$spalte2 \| \n"
2209	fi
2210	if [[ $maximum_parallel_io_streams != $numprocs ]]
2211	then
2212	spalte1="max par io streams:"; spalte2="$maximum_parallel_io_streams"
2213	printf "\| $spalte1$spalte2 \| \n"
2214	fi
2215	if [[ $use_openmp = true ]]
2216	then
2217	spalte1="threads per task:"; spalte2="$threads_per_task"
2218	printf "\| $spalte1$spalte2 \| \n"
2219	fi
2220	printf "\| \| \n"
2221	if [[ $do_compile = true ]]
2222	then
2223	if [[ "$mopts" != "" ]]
2224	then
2225	spalte1="make options:"; spalte2=$mopts
2226	printf "\| $spalte1$spalte2 \| \n"
2227	zeile=$(echo "$mopts" \| cut -c41-)
2228	while [[ "$zeile" != "" ]]
2229	do
2230	spalte1=""
2231	spalte2=$zeile
2232	printf "\| $spalte1$spalte2 \| \n"
2233	zeile=$(echo "$zeile" \| cut -c41-)
2234	done
2235	fi
2236
2237	spalte1="cpp directives:"; spalte2=$cpp_options
2238	printf "\| $spalte1$spalte2 \| \n"
2239	zeile=$(echo "$cpp_options" \| cut -c41-)
2240	while [[ "$zeile" != "" ]]
2241	do
2242	spalte1=""
2243	spalte2=$zeile
2244	printf "\| $spalte1$spalte2 \| \n"
2245	zeile=$(echo "$zeile" \| cut -c41-)
2246	done
2247
2248	spalte1="compiler options:"; spalte2="$fopts"
2249	printf "\| $spalte1$spalte2 \| \n"
2250	zeile=$(echo "$fopts" \| cut -c41-)
2251	while [[ "$zeile" != "" ]]
2252	do
2253	spalte1=""
2254	spalte2=$zeile
2255	printf "\| $spalte1$spalte2 \| \n"
2256	zeile=$(echo "$zeile" \| cut -c41-)
2257	done
2258
2259	spalte1="linker options:"; spalte2=$lopts
2260	printf "\| $spalte1$spalte2 \| \n"
2261	zeile=$(echo "$lopts" \| cut -c41-)
2262	while [[ "$zeile" != "" ]]
2263	do
2264	spalte1=""
2265	spalte2=$zeile
2266	printf "\| $spalte1$spalte2 \| \n"
2267	zeile=$(echo "$zeile" \| cut -c41-)
2268	done
2269
2270	spalte1="modules to be load:"; spalte2=$modules
2271	printf "\| $spalte1$spalte2 \| \n"
2272	zeile=$(echo "$modules" \| cut -c41-)
2273	while [[ "$zeile" != "" ]]
2274	do
2275	spalte1=""
2276	spalte2=$zeile
2277	printf "\| $spalte1$spalte2 \| \n"
2278	zeile=$(echo "$zeile" \| cut -c41-)
2279	done
2280
2281	spalte1="main program":; spalte2=$mainprog
2282	printf "\| $spalte1$spalte2 \| \n"
2283	else
2284	spalte1=executable:; spalte2=$executable
2285	printf "\| $spalte1$spalte2 \| \n"
2286	fi
2287	printf "\| \| \n"
2288	spalte1="base name of files":; spalte2=$fname
2289	printf "\| $spalte1$spalte2 \| \n"
2290	if [[ $fname != $afname ]]
2291	then
2292	spalte1="base name of input files":; spalte2=$afname
2293	printf "\| $spalte1$spalte2 \| \n"
2294	fi
2295	spalte1="INPUT control list":; spalte2=$input_list
2296	printf "\| $spalte1$spalte2 \| \n"
2297	spalte1="OUTPUT control list":; spalte2=$output_list
2298	printf "\| $spalte1$spalte2 \| \n"
2299
2300	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2301	then
2302	spalte1="memory demand / PE":; spalte2="$memory MB"
2303	printf "\| $spalte1$spalte2 \| \n"
2304	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2305	printf "\| $spalte1$spalte2 \| \n"
2306	fi
2307
2308	if [[ $do_compile = true ]]
2309	then
2310	printf "\| \| \n"
2311	printf "\| Files to be compiled: \| \n"
2312	zeile=$source_list
2313	while [[ "$zeile" != "" ]]
2314	do
2315	spalte3=$zeile
2316	printf "\| $spalte3 \| \n"
2317	zeile=$(echo "$zeile" \| cut -c61-)
2318	done
2319	fi
2320	printf "#--------------------------------------------------------------#"
2321
2322
2323
2324	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2325	if [[ $do_trace = true ]]
2326	then
2327	(( i = 0 ))
2328	while (( i < iin ))
2329	do
2330	(( i = i + 1 ))
2331	if (( i == 1 ))
2332	then
2333	printf "\n\n >>> INPUT-file assignments:\n"
2334	fi
2335	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2336	done
2337	(( i = 0 ))
2338	while (( i < iout ))
2339	do
2340	(( i = i + 1 ))
2341	if (( i == 1 ))
2342	then
2343	printf "\n\n >>> OUTPUT-file assignments:\n"
2344	fi
2345	printf "\n ${localout[$i]} : ${pathout[$i]}"
2346	done
2347	(( i = 0 ))
2348	while (( i < iic ))
2349	do
2350	(( i = i + 1 ))
2351	if (( i == 1 ))
2352	then
2353	printf "\n\n >>> INPUT-commands:\n"
2354	fi
2355	printf "\n ${in_command[$i]}"
2356	done
2357	(( i = 0 ))
2358	while (( i < ioc ))
2359	do
2360	(( i = i + 1 ))
2361	if (( i == 1 ))
2362	then
2363	printf "\n\n >>> OUTPUT-commands:\n"
2364	fi
2365	printf "\n ${out_command[$i]}"
2366	done
2367	fi
2368
2369
2370	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2371	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2372	then
2373	antwort=dummy
2374	printf "\n\n"
2375	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2376	do
2377	printf " >>> everything o.k. (y/n) ? "
2378	read antwort
2379	done
2380	if [[ $antwort = n \|\| $antwort = N ]]
2381	then
2382	locat=user_abort; (( iec = 0 )); exit
2383	fi
2384	if [[ $do_batch = true ]]
2385	then
2386	printf " >>> batch-job will be created and submitted"
2387	else
2388	if [[ $local_compile = false ]]
2389	then
2390	printf " >>> MRUN will now continue to execute on this machine"
2391	else
2392	printf " >>> a test compilation will now be carried out on this machine"
2393	fi
2394	fi
2395	fi
2396
2397
2398
2399
2400	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2401	# CHENDE AKTIONEN DURCHGEFUEHRT
2402	if [[ $do_batch = false ]]
2403	then
2404
2405
2406	# TEMPORAEREN KATALOG ERZEUGEN
2407	mkdir -p $TEMPDIR
2408	chmod go+rx $TEMPDIR
2409	tmpcreate=true
2410
2411	# set striping on lustre file system
2412	# if [[ $localhost = lcsgih ]]
2413	# then
2414	# lfs setstripe -s 8192k -c 16 $TEMPDIR
2415	# lfs getstripe $TEMPDIR
2416	# fi
2417
2418
2419	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2420	# TEMPORAERES VERZEICHNIS KOPIEREN
2421	if [[ $do_compile = true ]]
2422	then
2423
2424	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2425	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2426	if [[ $localhost = nech ]]
2427	then
2428	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2429	if mkdir -p $TEMPDIR_COMPILE
2430	then
2431	printf "\n *** \"$TEMPDIR_COMPILE\" "
2432	printf "\n is generated as temporary directory for cross compiling\n"
2433	else
2434	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2435	printf "\n needed for cross compilation failed"
2436	locat=compile
2437	exit
2438	fi
2439	else
2440	TEMPDIR_COMPILE=$TEMPDIR
2441	fi
2442
2443
2444	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2445	line=""
2446	grep "%depository_path" $config_file > tmp_mrun
2447	while read line
2448	do
2449	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2450	then
2451	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2452	then
2453	global_depository_path=`echo $line \| cut -d" " -s -f2`
2454	fi
2455	fi
2456	done < tmp_mrun
2457
2458	line=""
2459	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2460	while read line
2461	do
2462	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2463	then
2464	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2465	then
2466	local_depository_path=`echo $line \| cut -d" " -s -f2`
2467	fi
2468	fi
2469	done < tmp_mrun
2470
2471	if [[ "$local_depository_path" = "" ]]
2472	then
2473	if [[ "$global_depository_path" != "" ]]
2474	then
2475	local_depository_path=$global_depository_path
2476	else
2477	printf "\n\n +++ no depository path found in configuration file"
2478	printf "\n for local host \"$localhost\" "
2479	printf "\n please set \"\%depository_path\" in configuration file\n"
2480	locat=config_file; exit
2481	fi
2482	fi
2483	eval local_depository_path=$local_depository_path
2484	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2485	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2486
2487
2488	basename=`print $mainprog \| cut -f1 -d"."`
2489	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2490	if [[ ! -f $make_depository ]]
2491	then
2492	printf "\n"
2493	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2494	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2495	else
2496	cp $make_depository $TEMPDIR_COMPILE
2497	cd $TEMPDIR_COMPILE
2498	tar -xf $make_depository > /dev/null 2>&1
2499	cd - > /dev/null
2500	fi
2501
2502	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2503
2504	else
2505
2506	cp $executable ${TEMPDIR}/a.out
2507
2508	fi
2509
2510
2511	# WECHSEL IN TEMPORAEREN KATALOG
2512	cd $TEMPDIR
2513	printf "\n *** changed to temporary directory: $TEMPDIR"
2514
2515
2516	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2517	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2518	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2519	# ERMITTELN
2520	(( i = 0 ))
2521	while (( i < iout ))
2522	do
2523	(( i = i + 1 ))
2524	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2525	then
2526	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2527	else
2528	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2529	fi
2530	done
2531
2532
2533	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2534	if [[ $do_compile = true ]]
2535	then
2536
2537
2538	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2539	printf "\n\n\n *** compilation starts \n$striche\n"
2540	printf " *** compilation with make using following options:\n"
2541	printf " make depository: $make_depository"
2542	if [[ "$mopts" != "" ]]
2543	then
2544	printf " make options: $mopts\n"
2545	fi
2546	printf " compilername: $compiler_name\n"
2547	printf " compiler options: $fopts\n"
2548	printf " preprocessor directives: $cpp_options \n"
2549	printf " linker options: $lopts \n"
2550	if [[ "$modules" != "" ]]
2551	then
2552	printf " modules to be load: $modules \n"
2553	fi
2554	printf " source code files: $source_list \n"
2555
2556	if [[ $localhost = nech ]]
2557	then
2558	ssh 136.172.44.192 -l $usern ". /SX/opt/etc/initsx.sh; $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2559	cp $TEMPDIR_COMPILE/a.out .
2560	[[ $? != 0 ]] && compile_error=true
2561	rm -rf $TEMPDIR_COMPILE
2562	elif [[ $localhost = ibmh ]]
2563	then
2564	printf " compiler is called via ssh on \"plogin1\" \n"
2565	ssh plogin1 -l $usern "export PATH=/sw/ibm/xlf/12.1.0.3/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2566	[[ ! -f a.out ]] && compile_error=true
2567	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2568	elif [[ $localhost = lcsgib ]]
2569	then
2570	printf " compiler is called via ssh on \"bicegate0\" \n"
2571	ssh bicegate0 -l $usern ". /usr/share/modules/init/bash; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2572	[[ ! -f a.out ]] && compile_error=true
2573	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2574	elif [[ $localhost = lcsgih ]]
2575	then
2576	printf " compiler is called via ssh on \"hicegate0\" \n"
2577	ssh hicegate0 -l $usern ". /usr/share/modules/init/bash; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2578	[[ ! -f a.out ]] && compile_error=true
2579	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2580	elif [[ $localhost = lcflow ]]
2581	then
2582	printf " compiler is called via ssh on \"flow\" \n"
2583	ssh flow02.hpc.uni-oldenburg.de -l $usern ". /cm/local/apps/environment-modules/3.2.6/Modules/3.2.6/init/bash; echo $MODULEPATH; echo $MODULESHOME; MODULEPATH=/cm/shared/modulefiles/; module load netcdf/intel/64/4.1.3 intel/ics/64/2011.0.013 intel/impi/64/4.0.1.007 hdf5/intel/64/1.8.7; cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2584	[[ ! -f a.out ]] && compile_error=true
2585	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2586	else
2587	[[ $localhost = lcxt4 ]] && . /opt/modules/default/init/ksh
2588	[[ "$module_calls" != "" ]] && eval $module_calls
2589	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2590	fi
2591
2592	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2593	then
2594	printf "\n +++ error occured while compiling or linking"
2595	locat=compile
2596
2597	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
2598	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
2599	# then
2600	exit
2601	# else
2602	# locat=normal
2603	# fi
2604	else
2605	printf "$striche\n *** compilation finished \n"
2606	fi
2607	fi
2608
2609
2610	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2611	if [[ $local_compile = true ]]
2612	then
2613	cd $HOME
2614	rm -rf $TEMPDIR
2615	locat=local_compile; exit
2616	fi
2617
2618
2619	# BEREITSTELLEN DER INPUT-DATEIEN
2620	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2621	(( i = 0 ))
2622	while (( i < iin ))
2623	do
2624	(( i = i + 1 ))
2625	if (( i == 1 ))
2626	then
2627	printf "\n\n *** providing INPUT-files:\n$striche"
2628	fi
2629
2630
2631	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2632	if [[ "${transin[$i]}" = unavailable ]]
2633	then
2634	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2635	then
2636	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2637	printf "\n is not available!"
2638	else
2639	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2640	printf "\n is not available!"
2641	fi
2642	continue
2643	fi
2644
2645	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2646	files_for_pes=false; datentyp=file
2647	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2648	then
2649	files_for_pes=true; datentyp=directory
2650	actionin[$i]=""
2651	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2652	then
2653	actionin[$i]=""
2654	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2655	then
2656	files_for_pes=true; datentyp=directory
2657	actionin[$i]="ar"
2658	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2659	then
2660	actionin[$i]="ar"
2661	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2662	then
2663	files_for_pes=true; datentyp=directory
2664	actionin[$i]="fl"
2665	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2666	then
2667	actionin[$i]="fl"
2668	fi
2669
2670	if [[ $files_for_pes = true ]]
2671	then
2672	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
2673	else
2674	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
2675	fi
2676
2677	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
2678	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
2679	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
2680	# SERVER ZU HOLEN
2681	if [[ "${actionin[$i]}" = fl ]]
2682	then
2683	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
2684	if [[ $files_for_pes = false ]]
2685	then
2686	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
2687	then
2688	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
2689	got_tmp[$i]=true
2690	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2691	then
2692	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2693	printf "\n *** trying to use backup copy in \"$WORK\" "
2694	cp $WORK/${frelin[$i]} ${localin[$i]}
2695	else
2696	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2697	printf "\n or \"$tmp_data_catalog\" does not exist!"
2698	printf "\n *** trying to get copy from archive"
2699	actionin[$i]=ar
2700	fi
2701	else
2702	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
2703	then
2704	mkdir ${localin[$i]}
2705	cd $tmp_data_catalog/${frelin[$i]}
2706	for file in $(ls *)
2707	do
2708	ln $file $TEMPDIR/${localin[$i]}
2709	done
2710	cd $TEMPDIR
2711	got_tmp[$i]=true
2712	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2713	then
2714	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2715	printf "\n *** trying to use backup copy in \"$WORK\" "
2716	cp -r $WORK/${frelin[$i]} ${localin[$i]}
2717	else
2718	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2719	printf "\n or \"$tmp_data_catalog\" does not exist!"
2720	printf "\n *** trying to get copy from archive"
2721	actionin[$i]=ar
2722	fi
2723	fi
2724	fi
2725
2726
2727	# DATEI LIEGT AUF ARCHIV-SERVER
2728	if [[ "${actionin[$i]}" = ar ]]
2729	then
2730
2731	if [[ $files_for_pes = false ]]
2732	then
2733	printf "\n file will be restored from archive-system ($archive_system)!"
2734	else
2735	printf "\n directory will be restored from archive-system ($archive_system)!"
2736	fi
2737
2738	file_restored=false
2739
2740	if [[ $archive_system = asterix ]]
2741	then
2742	do_stagein=true
2743	(( stagein_anz = 0 ))
2744	while [[ $do_stagein = true ]]
2745	do
2746	if [[ $files_for_pes = false ]]
2747	then
2748	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
2749	else
2750	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
2751	fi
2752	cat STAGEIN_OUTPUT
2753	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
2754	then
2755	file_restored=true
2756	do_stagein=false
2757	else
2758	(( stagein_anz = stagein_anz + 1 ))
2759	if (( stagein_anz == 10 ))
2760	then
2761	printf "\n +++ stagein stoped after 10 tries"
2762	locat=stage
2763	exit
2764	fi
2765	printf "\n +++ restoring from archive failed, trying again:"
2766	sleep 900
2767	fi
2768	done
2769	elif [[ $archive_system = DMF ]]
2770	then
2771	if [[ $files_for_pes = false ]]
2772	then
2773	printf "\n +++ restoring of single files impossible with $archive_system !\n"
2774	locat=DMF
2775	exit
2776	else
2777	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
2778	cp -r $ARCHIVE/${frelin[$i]} $PWD
2779	file_restored=true
2780	fi
2781	elif [[ $archive_system = tivoli ]]
2782	then
2783	if [[ $files_for_pes = false ]]
2784	then
2785	if [[ $localhost = lcsgih ]]
2786	then
2787	ssh $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2788	else
2789	ssh $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2790	fi
2791	else
2792	(( inode = 0 ))
2793	while (( inode < nodes ))
2794	do
2795	if [[ $localhost = lcsgih ]]
2796	then
2797	ssh $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2798	else
2799	ssh $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2800	fi
2801	(( inode = inode + 1 ))
2802	done
2803	fi
2804	file_restored=true
2805	elif [[ $archive_system = ut ]]
2806	then
2807	if [[ $files_for_pes = false ]]
2808	then
2809	cp $UT/${frelin[$i]} .
2810	else
2811	(( inode = 0 ))
2812	while (( inode < nodes ))
2813	do
2814	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
2815	(( inode = inode + 1 ))
2816	done
2817	fi
2818	file_restored=true
2819	else
2820	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
2821	locat=rearchive
2822	exit
2823	fi
2824
2825	if [[ $file_restored = true ]]
2826	then
2827
2828	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
2829	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
2830	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
2831	if [[ $files_for_pes = false ]]
2832	then
2833	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
2834	else
2835	mkdir $tmp_data_catalog/${frelin[$i]}
2836	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
2837	fi
2838	got_tmp[$i]=true
2839
2840	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
2841	mv ${frelin[$i]} ${localin[$i]}
2842
2843	fi
2844	fi
2845
2846
2847	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
2848	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
2849	then
2850
2851	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
2852	then
2853
2854	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
2855	printf "\n file will be provided for $numprocs processors"
2856	mkdir ${localin[$i]}
2857	ival=$numprocs
2858	(( ii = 0 ))
2859	while (( ii <= ival-1 ))
2860	do
2861	if (( ii < 10 ))
2862	then
2863	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
2864	elif (( ii < 100 ))
2865	then
2866	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
2867	elif (( ii < 1000 ))
2868	then
2869	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
2870	else
2871	cp ${absnamein[$i]} ${localin[$i]}/_$ii
2872	fi
2873	(( ii = ii + 1 ))
2874	done
2875
2876	else
2877
2878	if [[ $files_for_pes = true ]]
2879	then
2880
2881	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
2882	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
2883	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
2884	# PER MOVE UMBENANNT WERDEN
2885	printf "\n providing $numprocs files for the respective processors"
2886	mkdir ${localin[$i]}
2887	if [[ $link_local_input = true ]]
2888	then
2889	printf " using ln -f\n"
2890	cd ${absnamein[$i]}
2891	for file in $(ls *)
2892	do
2893	ln -f $file ${localin[$i]}
2894	done
2895	cd $TEMPDIR
2896	fi
2897	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
2898	if [[ ! -f "${localin[$i]}/_0000" ]]
2899	then
2900	if [[ $link_local_input = true ]]
2901	then
2902	printf " ln failed for .../_0000, using cp...\n"
2903	fi
2904	cp -r ${absnamein[$i]}/* ${localin[$i]}
2905	fi
2906
2907	else
2908	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
2909	if [[ $link_local_input = true ]]
2910	then
2911	printf " using ln -f\n"
2912	ln -f ${absnamein[$i]} ${localin[$i]}
2913	fi
2914	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
2915	if [[ ! -f "${localin[$i]}" ]]
2916	then
2917	if [[ $link_local_input = true ]]
2918	then
2919	printf " ln failed, using cp...\n"
2920	fi
2921	cp ${absnamein[$i]} ${localin[$i]}
2922	fi
2923	fi
2924	fi
2925	fi
2926
2927	done
2928	if (( i != 0 ))
2929	then
2930	printf "\n$striche\n *** all INPUT-files provided \n"
2931	fi
2932
2933
2934	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
2935	(( i = 0 ))
2936	while (( i < iic ))
2937	do
2938	(( i = i + 1 ))
2939	if (( i == 1 ))
2940	then
2941	printf "\n\n *** execution of INPUT-commands:\n$striche"
2942	fi
2943	printf "\n >>> ${in_command[$i]}"
2944	eval ${in_command[$i]}
2945	if (( i == iic ))
2946	then
2947	printf "\n$striche\n"
2948	fi
2949	done
2950
2951
2952	# VERBLEIBENDE CPU-ZEIT BERECHNEN
2953	cpurest=${cpumax}.
2954
2955
2956	# START DVR STREAMING SERVER
2957	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
2958	then
2959	if [[ "$dvr_server" != "" ]]
2960	then
2961
2962	printf "\n\n *** preparing the dvr streaming server configuration file"
2963
2964	# Check, if a dvr server is already running
2965	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
2966	if [[ "$running_dvrserver_id" != "" ]]
2967	then
2968
2969	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
2970	printf "\n This server is used instead starting a new one!"
2971	printf "\n If required, script \"process_dvr_output\" has to be run manually."
2972
2973	else
2974
2975	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
2976	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
2977	then
2978	cp ${PALM_BIN}/.dvrserver.config .
2979
2980	# Entering the BASEDIR, UID and GID into this file
2981	user_id=`id -u`
2982	group_id=`id -g`
2983	# & is needed as seperator, because TEMPDIR contains /
2984	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
2985	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
2986	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
2987	mv .dvrserver.3 .dvrserver.config
2988	rm .dvrserver.1 .dvrserver.2
2989
2990	# Start dvr server in background, get his id and print on terminal
2991	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
2992	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
2993	printf "\n *** streaming server with id=$dvrserver_id is started in background"
2994	local_dvrserver_running=.TRUE.
2995	else
2996	printf "\n +++ missing file \".dvrserver.config\" in directory:"
2997	printf "\n \"$PALM_BIN\" "
2998	locat=dvr
2999	exit
3000	fi
3001
3002	fi
3003
3004	else
3005	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
3006	fi
3007	fi
3008
3009
3010	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
3011	# LESEN VON PALM)
3012	cat > ENVPAR << %%END%%
3013	&envpar run_identifier = '$fname', host = '$localhost',
3014	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
3015	maximum_parallel_io_streams = $maximum_parallel_io_streams,
3016	maximum_cpu_time_allowed = ${cpumax}.,
3017	revision = '$global_revision',
3018	local_dvrserver_running = $local_dvrserver_running /
3019
3020	%%END%%
3021
3022
3023	# PROGRAMMSTART
3024	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
3025	PATH=$PATH:$TEMPDIR
3026
3027	# MPI debug option (argument checking, slows down execution due to increased latency)
3028	if [[ "$mpi_debug" = true ]]
3029	then
3030	export MPI_CHECK_ARGS=1
3031	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
3032	fi
3033
3034	if [[ "$totalview" = true ]]
3035	then
3036	printf "\n *** totalview debugger will be used"
3037	tv_opt="-tv"
3038	else
3039	tv_opt=""
3040	fi
3041
3042	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
3043	then
3044	if [[ "$ENVIRONMENT" = BATCH ]]
3045	then
3046	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
3047	then
3048	printf "\n +++ debug is allowed in interactive mode only"
3049	locat=debug
3050	exit
3051	fi
3052	fi
3053	if [[ $localhost = decalpha ]]
3054	then
3055	dxladebug a.out
3056	elif [[ $localhost = ibmh ]]
3057	then
3058
3059	# SETUP THE IBM MPI ENVIRONMENT
3060	export MP_SHARED_MEMORY=yes
3061	export AIXTHREADS_SCOPE=S
3062	export OMP_NUM_THREADS=$threads_per_task
3063	export AUTHSTATE=files
3064	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3065
3066	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
3067	export MP_ADAPTER_USE=shared
3068	export MP_CPU_USE=multiple
3069	export MP_TIMEOUT=1200
3070
3071	unset MP_TASK_AFFINITY
3072
3073	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
3074	#(( ii = 1 ))
3075	#while (( ii <= $numprocs ))
3076	#do
3077	# echo $localhost_realname >> hostfile
3078	# (( ii = ii + 1 ))
3079	#done
3080	#export MP_HOSTFILE=hostfile
3081
3082	if [[ "$LOADLBATCH" = yes ]]
3083	then
3084	totalview poe a.out $ROPTS
3085	else
3086	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3087	export TVDSVRLAUNCHCMD=ssh
3088	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3089	fi
3090	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
3091	then
3092	# CURRENTLY NO DEBUGGER ON LCSGI
3093	if [[ $run_coupled_model = true ]]
3094	then
3095	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
3096	locat=debug
3097	exit
3098	else
3099	echo "no_coupling" > runfile_atmos
3100	fi
3101	(( ii = $numprocs / $threads_per_task ))
3102	export OMP_NUM_THREADS=$threads_per_task
3103	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3104	if [[ $threads_per_task != 1 ]]
3105	then
3106	printf "\n threads per task: $threads_per_task"
3107	fi
3108	printf "\n\n"
3109	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3110	then
3111	# export MPI_LAUNCH_TIMEOUT=360
3112	if [[ "$totalview" = true ]]
3113	then
3114	printf "\n running totalview debugger"
3115	mpiexec_mpt $tv_opt -n $ii ./a.out $ROPTS < runfile_atmos
3116	else
3117	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3118	fi
3119	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3120	then
3121	# ulimit -s 300000 # A too large stack size causes problems
3122	# export MV2_NUM_PORTS=2
3123	# export MV2_CPU_MAPPING=0:1:2:3
3124	if [[ "$totalview" = true ]]
3125	then
3126	printf "\n running totalview debugger"
3127	mpiexec $tv_opt ./a.out $ROPTS < runfile_atmos
3128	else
3129	mpiexec ./a.out $ROPTS < runfile_atmos
3130	fi
3131	fi
3132	else
3133	printf "\n +++ no debug available on \"$localhost\" "
3134	printf "\n or not implemented in mrun so far"
3135	locat=debug
3136	exit
3137	fi
3138
3139	# end debug mode
3140	else
3141
3142	# normal execution
3143	if [[ -n $numprocs ]]
3144	then
3145	# RUNNING THE PROGRAM ON PARALLEL MACHINES
3146	if [[ $(echo $host \| cut -c1-3) = ibm ]]
3147	then
3148	# SETUP THE IBM MPI ENVIRONMENT
3149	if [[ $host != ibmh && $host != ibmkisti ]]
3150	then
3151	export MP_SHARED_MEMORY=yes
3152	export AIXTHREAD_SCOPE=S
3153	export OMP_NUM_THREADS=$threads_per_task
3154	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
3155	export AUTHSTATE=files
3156	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3157	# export MP_PRINTENV=yes
3158
3159	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3160	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3161	export MP_WAIT_MODE=poll
3162	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3163	fi
3164
3165	if [[ $host = ibmkisti ]]
3166	then
3167	export LANG=en_US
3168	export MP_SHARED_MEMORY=yes
3169	if [[ $threads_per_task = 1 ]]
3170	then
3171	export MP_SINGLE_THREAD=yes
3172	export MEMORY_AFFINITY=MCM
3173	else
3174	export OMP_NUM_THREADS=$threads_per_task
3175	fi
3176	fi
3177
3178	if [[ "$LOADLBATCH" = yes ]]
3179	then
3180	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3181	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3182	then
3183	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3184	else
3185	if [[ $run_coupled_model = false ]]
3186	then
3187	if [[ "$ocean_file_appendix" = true ]]
3188	then
3189	echo "precursor_ocean" > runfile_atmos
3190	else
3191	echo "precursor_atmos" > runfile_atmos
3192	fi
3193	else
3194	(( iia = $numprocs_atmos / $threads_per_task ))
3195	(( iio = $numprocs_ocean / $threads_per_task ))
3196	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3197	printf "\n using $coupled_mode coupling"
3198	printf "\n\n"
3199	echo "coupled_run $iia $iio" > runfile_atmos
3200	fi
3201	poe ./a.out $ROPTS < runfile_atmos
3202	fi
3203	else
3204	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
3205	then
3206	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3207	elif [[ $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibmy ]]
3208	then
3209	if [[ -f $hostfile ]]
3210	then
3211	cp $hostfile hostfile
3212	else
3213	(( ii = 1 ))
3214	while (( ii <= $numprocs ))
3215	do
3216	echo $localhost_realname >> hostfile
3217	(( ii = ii + 1 ))
3218	done
3219	fi
3220	export MP_HOSTFILE=hostfile
3221	if [[ $run_coupled_model = false ]]
3222	then
3223	if [[ "$ocean_file_appendix" = true ]]
3224	then
3225	echo "precursor_ocean" > runfile_atmos
3226	else
3227	echo "precursor_atmos" > runfile_atmos
3228	fi
3229	else
3230	(( iia = $numprocs_atmos / $threads_per_task ))
3231	(( iio = $numprocs_ocean / $threads_per_task ))
3232	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3233	printf "\n using $coupled_mode coupling"
3234	printf "\n\n"
3235	echo "coupled_run $iia $iio" > runfile_atmos
3236	fi
3237	if [[ $localhost = ibmy ]]
3238	then
3239	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3240	else
3241	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
3242	fi
3243
3244	else
3245	if [[ "$host_file" = "" ]]
3246	then
3247	printf "\n +++ no hostfile given in configuration file"
3248	locat=config_file
3249	exit
3250	else
3251	eval host_file=$host_file
3252	fi
3253	export MP_HOSTFILE=$host_file
3254	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3255	fi
3256	fi
3257	elif [[ $host = nech \|\| $host = necriam ]]
3258	then
3259	(( ii = nodes ))
3260	if [[ $ii = 1 ]]
3261	then
3262	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3263	export MPIPROGINF=YES
3264	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3265	echo "*** execution on single node with mpirun"
3266	mpirun -np $numprocs ./a.out $ROPTS
3267	else
3268	(( i = 0 ))
3269	while (( i < ii ))
3270	do
3271	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3272	(( i = i + 1 ))
3273	done
3274
3275	echo "#!/bin/sh" > mpi_exec_shell
3276	echo " " >> mpi_exec_shell
3277	echo "set -u" >> mpi_exec_shell
3278	echo "F_ERRCNT=0" >> mpi_exec_shell
3279	echo "MPIPROGINV=YES" >> mpi_exec_shell
3280	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3281	echo "cpurest=$cpurest" >> mpi_exec_shell
3282	echo "fname=$fname" >> mpi_exec_shell
3283	echo "localhost=$localhost" >> mpi_exec_shell
3284	echo "return_addres=$return_addres" >> mpi_exec_shell
3285	echo "return_username=$return_username" >> mpi_exec_shell
3286	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3287	echo "write_binary=$write_binary" >> mpi_exec_shell
3288	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3289	echo " " >> mpi_exec_shell
3290	echo "export F_ERRCNT" >> mpi_exec_shell
3291	echo "export MPIPROGINV" >> mpi_exec_shell
3292	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3293	echo "export cpurest" >> mpi_exec_shell
3294	echo "export fname" >> mpi_exec_shell
3295	echo "export localhost" >> mpi_exec_shell
3296	echo "export return_addres" >> mpi_exec_shell
3297	echo "export return_username" >> mpi_exec_shell
3298	echo "export tasks_per_node" >> mpi_exec_shell
3299	echo "export write_binary" >> mpi_exec_shell
3300	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3301	echo " " >> mpi_exec_shell
3302	echo "exec ./a.out" >> mpi_exec_shell
3303
3304	chmod u+x mpi_exec_shell
3305	export MPIPROGINF=YES
3306	mpirun -f multinode_config &
3307	wait
3308
3309	fi
3310	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
3311	then
3312
3313	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3314	# DOES NOT EXIST
3315	if [[ $host != lcsgih && $host != lcsgib ]]
3316	then
3317	if [[ -f $hostfile ]]
3318	then
3319	cp $hostfile hostfile
3320	(( ii = $numprocs / $threads_per_task ))
3321	else
3322	(( ii = 1 ))
3323	while (( ii <= $numprocs / $threads_per_task ))
3324	do
3325	echo $localhost_realname >> hostfile
3326	(( ii = ii + 1 ))
3327	done
3328	fi
3329	eval zeile=\"`head -n $ii hostfile`\"
3330	printf "\n *** running on: $zeile"
3331	fi
3332
3333	(( ii = $numprocs / $threads_per_task ))
3334	export OMP_NUM_THREADS=$threads_per_task
3335	# echo "*** OMP_NUM_THREADS=$OMP_NUM_THREADS"
3336	if [[ $threads_per_task != 1 ]]
3337	then
3338	# increase stack size to unlimited, because large runs
3339	# may abort otherwise
3340	ulimit -Ss unlimited
3341	printf "\n threads per task: $threads_per_task stacksize: unlimited"
3342	fi
3343	if [[ $run_coupled_model = false ]]
3344	then
3345	if [[ "$ocean_file_appendix" = true ]]
3346	then
3347	echo "precursor_ocean" > runfile_atmos
3348	else
3349	echo "precursor_atmos" > runfile_atmos
3350	fi
3351	printf "\n\n"
3352	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3353	then
3354	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3355	then
3356	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3357	# export MPI_DSM_DISTRIBUTE=1
3358	# MPI_DSM_CPULIST: pin MPI processes to cores
3359	if [[ $use_openmp = false ]]
3360	then
3361	if [[ "$sgi_feature" = ice2 ]]
3362	then
3363	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
3364	else
3365	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3366	fi
3367	else
3368	unset MPI_DSM_CPULIST
3369	fi
3370	# MPI_IB_RAILS: use both IB rails on ICE2
3371	export MPI_BUFS_PER_HOST=512
3372	export MPI_IB_RAILS=2
3373	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3374	export MPI_CONNECTIONS_THRESHOLD=8192
3375	# echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
3376	export MPI_TYPE_DEPTH=20
3377	# echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
3378	export MPI_GROUP_MAX=64
3379	# echo "*** MPI_GROUP_MAX=$MPI_GROUP_MAX"
3380	if [[ $use_openmp = true ]]
3381	then
3382	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3383	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3384	else
3385	mpiexec_mpt -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3386	fi
3387
3388	# next is test for openmp usage
3389	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3390	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
3391	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3392	then
3393	export MV2_NUM_PORTS=2
3394	# The default setting of MV2_CPU_MAPPING gives best results
3395	# export MV2_ENABLE_AFFINITY=1
3396	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3397	# if [[ "$sgi_feature" = ice2 ]]
3398	# then
3399	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
3400	# else
3401	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3402	# fi
3403	if [[ $use_openmp = true ]]
3404	then
3405	unset MV2_CPU_MAPPING
3406	export MV2_ENABLE_AFFINITY=0
3407	fi
3408	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
3409	echo "*** MV2_ENABLE_AFFINITY=$MV2_ENABLE_AFFINITY"
3410	if [[ $use_openmp = true ]]
3411	then
3412	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3413	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3414	else
3415	mpiexec -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3416	fi
3417	elif [[ "$mpilib" = impi ]]
3418	then
3419	echo "mpirun -np $tasks_per_node inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos"
3420	mpirun -np $tasks_per_node inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos
3421	fi
3422	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3423	then
3424	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3425	elif [[ $host = lcflow ]]
3426	then
3427	mpiexec -machinefile $TMPDIR/machines -n $ii -env I_MPI_FABRICS shm:ofa a.out < runfile_atmos $ROPTS
3428	else
3429	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3430	fi
3431	else
3432
3433	# currently there is no full MPI-2 support on ICE and XT4
3434	(( iia = $numprocs_atmos / $threads_per_task ))
3435	(( iio = $numprocs_ocean / $threads_per_task ))
3436	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3437	printf "\n using $coupled_mode coupling"
3438	printf "\n\n"
3439
3440	if [[ $coupled_mode = "mpi2" ]]
3441	then
3442	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3443	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3444	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3445	then
3446
3447	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3448	then
3449	# export MPI_LAUNCH_TIMEOUT=360
3450	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3451	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3452	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3453	then
3454	# ulimit -s 300000 # A too large stack size causes problems
3455	# export MV2_NUM_PORTS=2
3456	# export MV2_CPU_MAPPING=0:1:2:3
3457	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3458	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3459	fi
3460
3461	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3462	then
3463
3464	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3465	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3466
3467	else
3468	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3469	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3470	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3471	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3472	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3473	fi
3474	wait
3475
3476	else
3477
3478	echo "coupled_run $iia $iio" > runfile_atmos
3479	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3480	then
3481
3482	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3483	then
3484	# export MPI_LAUNCH_TIMEOUT=360
3485	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3486	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3487	then
3488	# ulimit -s 300000 # A too large stack size causes problems
3489	# export MV2_NUM_PORTS=2
3490	# export MV2_CPU_MAPPING=0:1:2:3
3491	mpiexec ./a.out $ROPTS < runfile_atmos
3492	fi
3493
3494	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3495	then
3496
3497	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3498
3499	elif [[ $host = lck \|\| $host = lckordi ]]
3500	then
3501	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3502	fi
3503	wait
3504	fi
3505
3506	fi
3507	elif [[ $host = decalpha ]]
3508	then
3509	dmpirun -np $numprocs a.out $ROPTS
3510	elif [[ $host = lckyoto ]]
3511	then
3512	set -xv
3513	export P4_RSHCOMMAND=plesh
3514	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
3515	if [[ "$ENVIRONMENT" = BATCH ]]
3516	then
3517	if [[ "$cond2" = fujitsu ]]
3518	then
3519	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
3520	elif [[ "cond2" = pgi ]]
3521	then
3522	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
3523	else
3524	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
3525	fi
3526	else
3527	if [[ "$cond2" = "" ]]
3528	then
3529	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
3530	else
3531	mpirun -np $numprocs ./a.out $ROPTS
3532	fi
3533	fi
3534	set +xv
3535	elif [[ $host = lctit ]]
3536	then
3537	export OMP_NUM_THREADS=$threads_per_task
3538	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3539	if [[ "$threads_per_task" != 1 ]]
3540	then
3541	export MV2_ENABLE_AFFINITY=0
3542	fi
3543	echo "----- PBS_NODEFILE content:"
3544	cat $PBS_NODEFILE
3545	echo "-----"
3546	(( ii = $numprocs / $threads_per_task ))
3547	echo "mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS"
3548	mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS
3549	else
3550	mpprun -n $numprocs a.out $ROPTS
3551	fi
3552	[[ $? != 0 ]] && execution_error=true
3553
3554
3555	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3556	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3557	then
3558	apprentice
3559	fi
3560	else
3561	a.out $ROPTS
3562	fi
3563	fi
3564	if [[ $? != 0 \|\| $execution_error = true ]]
3565	then
3566
3567	# ABBRUCH BEI LAUFZEITFEHLER
3568	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3569	printf "\n +++ runtime error occured"
3570	locat=execution
3571	exit
3572	else
3573	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3574	printf "\n$striche\n *** execution finished \n"
3575
3576	# Stop the dvr streaming server and process the dvr output in order
3577	# to create dvrs- and html-files containing all streams
3578	if [[ "$dvrserver_id" != "" ]]
3579	then
3580	kill $dvrserver_id
3581	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3582
3583	# If there is a directory, data have been output by the
3584	# streaming server. Otherwise, user has chosen dvrp_output=local
3585	if [[ -d DATA_DVR ]]
3586	then
3587
3588	# Add the current dvr configuration file to the dvr output
3589	# directory
3590	cp .dvrserver.config DATA_DVR
3591
3592	# Process the dvr output (option -s for also generating
3593	# sequence mode data)
3594	process_dvr_output -d DATA_DVR -f $fname -s
3595
3596	else
3597
3598	# Process the local output
3599	process_dvr_output -l -d DATA_DVR -f $fname
3600
3601	fi
3602
3603	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3604	then
3605
3606	# Process dvr output generated in local mode (dvrp_output=local)
3607	process_dvr_output -l -d DATA_DVR -f $fname
3608
3609	fi
3610	fi
3611
3612
3613
3614	# Call of combine_plot_fields in order to merge single files written
3615	# by each PE into one file.
3616	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
3617	then
3618	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
3619	printf "\n 2d- and/or 3d-data may be incomplete!"
3620	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
3621	else
3622	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
3623	combine_plot_fields${block}.x
3624	fi
3625
3626
3627
3628	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3629	(( i = 0 ))
3630	while (( i < ioc ))
3631	do
3632	(( i = i + 1 ))
3633	if (( i == 1 ))
3634	then
3635	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
3636	fi
3637	printf "\n >>> ${out_command[$i]}"
3638	eval ${out_command[$i]}
3639	if (( i == ioc ))
3640	then
3641	printf "\n$striche\n"
3642	fi
3643	done
3644
3645
3646	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
3647	if [[ $do_trace = true ]]
3648	then
3649	printf "\n\n"
3650	ls -al
3651	fi
3652
3653
3654
3655	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
3656	(( i = 0 ))
3657	while (( i < iout ))
3658	do
3659	(( i = i + 1 ))
3660	if (( i == 1 ))
3661	then
3662	printf "\n\n *** saving OUTPUT-files:\n$striche"
3663	fi
3664
3665	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3666	files_for_pes=false; filetyp=file
3667	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
3668	then
3669	files_for_pes=true; filetyp=directory
3670	actionout[$i]=""
3671	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
3672	then
3673	actionout[$i]=""
3674	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
3675	then
3676	files_for_pes=true; filetyp=directory
3677	actionout[$i]="ar"
3678	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
3679	then
3680	actionout[$i]="ar"
3681	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
3682	then
3683	files_for_pes=true; filetyp=directory
3684	actionout[$i]="fl"
3685	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
3686	then
3687	actionout[$i]="fl"
3688	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
3689	then
3690	files_for_pes=true; filetyp=directory
3691	actionout[$i]="tr"
3692	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
3693	then
3694	actionout[$i]="tr"
3695	fi
3696
3697	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
3698	then
3699	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
3700	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
3701	then
3702	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
3703	else
3704
3705
3706	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3707	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3708	# REMOTE-RECHNUNGEN
3709	if [[ "${actionout[$i]}" = tr ]]
3710	then
3711	if [[ $localhost != $fromhost ]]
3712	then
3713	if [[ $files_for_pes = false ]]
3714	then
3715	cps=""
3716	cst=""
3717	else
3718	cps=-c
3719	cst="/"
3720	fi
3721	if [[ $localhost = nech ]]
3722	then
3723
3724	# TRANSFER IN EIGENSTAENDIGEM JOB
3725	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3726	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3727	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3728	if [[ $files_for_pes = false ]]
3729	then
3730	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3731	else
3732	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
3733	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
3734	fi
3735
3736	echo "set -x" > transfer_${localout[$i]}
3737	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3738
3739	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
3740	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
3741	printf "\n or higher cycle\n"
3742	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3743
3744	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3745
3746	if [[ $localhost = nech ]]
3747	then
3748	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3749	else
3750	if [[ "$LOGNAME" = b323013 ]]
3751	then
3752	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3753	else
3754	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3755	fi
3756	fi
3757
3758	else
3759
3760	# TRANSFER INNERHALB DIESES JOBS
3761	transfer_failed=false
3762	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
3763	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
3764	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3765	[[ $? != 0 ]] && transfer_failed=true
3766
3767	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3768	# LOKALER MASCHINE ANLEGEN
3769	if [[ $transfer_failed = true ]]
3770	then
3771	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3772	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3773
3774	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3775	# ANLEGEN.
3776	eval local_catalog=${pathout[$i]}
3777	if [[ ! -d $local_catalog ]]
3778	then
3779	printf " *** local directory does not exist. Trying to create:\n"
3780	printf " $local_catalog \n"
3781	mkdir -p $local_catalog
3782	fi
3783	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3784	transfer_problems=true
3785	fi
3786	fi
3787	else
3788
3789	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
3790	actionout[$i]=""
3791	fi
3792	fi
3793
3794
3795	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3796	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3797	# REMOTE-RECHNUNGEN
3798	if [[ "${actionout[$i]}" = tra ]]
3799	then
3800	if [[ $localhost != $fromhost ]]
3801	then
3802	if [[ $localhost = ibmh \|\| $localhost = nech ]]
3803	then
3804
3805	# TRANSFER IN EIGENSTAENDIGEM JOB
3806	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3807	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3808	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3809	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3810
3811	echo "set -x" > transfer_${localout[$i]}
3812	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3813
3814	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
3815	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
3816	printf "\n or higher cycle\n"
3817	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3818
3819	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3820
3821	if [[ $localhost = nech ]]
3822	then
3823	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3824	else
3825	if [[ $LOGNAME = b323013 ]]
3826	then
3827	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3828	else
3829	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3830	fi
3831	fi
3832
3833	else
3834
3835	# TRANSFER INNERHALB DIESES JOBS
3836	transfer_failed=false
3837	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
3838	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
3839	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3840	[[ $? != 0 ]] && transfer_failed=true
3841
3842	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3843	# LOKALER MASCHINE ANLEGEN
3844	if [[ $transfer_failed = true ]]
3845	then
3846	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3847	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3848
3849	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3850	# ANLEGEN
3851	eval local_catalog=${pathout[$i]}
3852	if [[ ! -d $local_catalog ]]
3853	then
3854	printf " *** local directory does not exist. Trying to create:\n"
3855	printf " $local_catalog \n"
3856	mkdir -p $local_catalog
3857	fi
3858
3859	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3860	transfer_problems=true
3861	fi
3862	fi
3863	else
3864
3865	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
3866	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
3867	actionout[$i]=a
3868	fi
3869	fi
3870
3871
3872	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
3873	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
3874	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
3875	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
3876	if [[ "${actionout[$i]}" = fl ]]
3877	then
3878	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3879	chmod g+rx $tmp_data_catalog
3880	if [[ $files_for_pes = false ]]
3881	then
3882	printf "\n >>> OUTPUT: ${localout[$i]} to"
3883	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3884	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
3885	else
3886	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
3887	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3888	mkdir $tmp_data_catalog/${frelout[$i]}
3889	cd ${localout[$i]}
3890	for file in $(ls *)
3891	do
3892	ln -f $file $tmp_data_catalog/${frelout[$i]}
3893	done
3894	cd $TEMPDIR
3895	fi
3896
3897
3898	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
3899	if [[ $store_on_archive_system = true ]]
3900	then
3901
3902	if [[ $archive_system = asterix ]]
3903	then
3904	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3905	if [[ $files_for_pes = false ]]
3906	then
3907	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3908	else
3909	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3910	fi
3911	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3912	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
3913	echo "then" >> archive_${frelout[$i]}
3914	echo " do_stageout=false" >> archive_${frelout[$i]}
3915	echo "else" >> archive_${frelout[$i]}
3916	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
3917	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
3918	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
3919	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
3920	if [[ $files_for_pes = false ]]
3921	then
3922	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
3923	else
3924	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
3925	fi
3926	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
3927	echo "fi" >> archive_${frelout[$i]}
3928	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3929	elif [[ $archive_system = DMF ]]
3930	then
3931	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3932	if [[ $files_for_pes = false ]]
3933	then
3934	printf "\n +++ archiving of single files impossible with $archive_system !\n"
3935	locat=DMF
3936	exit
3937	else
3938	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
3939	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
3940	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
3941	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
3942	fi
3943	elif [[ $archive_system = tivoli ]]
3944	then
3945	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3946	if [[ $files_for_pes = false ]]
3947	then
3948	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3949	echo "set -x" >> archive_${frelout[$i]}
3950	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3951	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3952	else
3953
3954	echo "set -x" >> archive_${frelout[$i]}
3955	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
3956	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3957	cd $tmp_data_catalog
3958	all_files=`ls -1 ${frelout[$i]}/*`
3959	cd - > /dev/null
3960	(( inode = 0 ))
3961	(( tp1 = tasks_per_node + 1 ))
3962	while (( inode < nodes ))
3963	do
3964	# echo "*** all_files = \"$all_files\" "
3965	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3966	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3967	# echo "*** tasks_per_node = \"$tasks_per_node\" "
3968	# echo "*** files = \"$files\" "
3969	# echo "*** all_files = \"$all_files\" "
3970	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3971	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3972	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
3973	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3974	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3975	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3976	(( inode = inode + 1 ))
3977	done
3978	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3979	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3980	fi
3981	elif [[ $archive_system = ut ]]
3982	then
3983	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3984	if [[ $files_for_pes = false ]]
3985	then
3986	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3987	echo "set -x" >> archive_${frelout[$i]}
3988	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3989	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3990	else
3991
3992	echo "set -x" >> archive_${frelout[$i]}
3993	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
3994	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
3995	cd $tmp_data_catalog
3996	all_files=`ls -1 ${frelout[$i]}/*`
3997	cd - > /dev/null
3998	(( inode = 0 ))
3999	(( tp1 = tasks_per_node + 1 ))
4000	while (( inode < nodes ))
4001	do
4002	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4003	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4004	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4005	(( inode = inode + 1 ))
4006	done
4007	fi
4008	elif [[ $archive_system = none ]]
4009	then
4010	printf " +++ archiving on $localhost not available!\n"
4011	fi
4012
4013	if [[ $archive_system != none ]]
4014	then
4015	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
4016	then
4017	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
4018	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog archive_${frelout[$i]}
4019	elif [[ $localhost = nech ]]
4020	then
4021	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
4022	fi
4023	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4024	fi
4025	else
4026	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
4027	fi
4028
4029
4030	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
4031	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4032	if [[ $files_for_pes = false ]]
4033	then
4034	cat /dev/null > ${pathout[$i]}
4035	else
4036	mkdir -p ${pathout[$i]}
4037	fi
4038
4039	fi
4040
4041
4042	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
4043	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
4044	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4045	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
4046	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
4047	# GEMAESSEN ARCHIVIERUNGEN GESETZT
4048	if [[ "${actionout[$i]}" = ar ]]
4049	then
4050	if [[ $files_for_pes = false ]]
4051	then
4052	printf "\n >>> OUTPUT: ${localout[$i]} to"
4053	printf "\n ${pathout[$i]}"
4054	printf "\n File will be copied to archive-system ($archive_system) !\n"
4055	else
4056	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
4057	printf "\n ${pathout[$i]}"
4058	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
4059	fi
4060	mv ${localout[$i]} ${frelout[$i]}
4061
4062	file_saved=false
4063
4064	if [[ $archive_system = asterix ]]
4065	then
4066	do_stageout=true
4067	(( stageout_anz = 0 ))
4068	while [[ $do_stageout = true ]]
4069	do
4070	if [[ $files_for_pes = false ]]
4071	then
4072	stageout ${frelout[$i]} > STAGE_OUTPUT
4073	else
4074	stageout -t ${frelout[$i]} > STAGE_OUTPUT
4075	fi
4076	cat STAGE_OUTPUT
4077	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
4078	then
4079	file_saved=true
4080	do_stageout=false
4081	else
4082	if [[ $files_for_pes = false ]]
4083	then
4084	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
4085	else
4086	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
4087	fi
4088	(( stageout_anz = stageout_anz + 1 ))
4089	if (( stageout_anz == 10 ))
4090	then
4091	printf "\n +++ stoped after 10 unsuccessful tries!"
4092	archive_save=false
4093	do_stageout=false
4094	else
4095	printf "\n *** new try to store on archive after 15 min:"
4096	sleep 900
4097	fi
4098	fi
4099	done
4100	elif [[ $archive_system = DMF ]]
4101	then
4102	if [[ $files_for_pes = false ]]
4103	then
4104	printf "\n +++ archiving of single files impossible on $archive_system!\n"
4105	locat=DMF
4106	exit
4107	else
4108	rm -rf $ARCHIVE/${frelout[$i]}
4109	cp -r ${frelout[$i]} $ARCHIVE
4110	fi
4111	file_saved=true
4112	elif [[ $archive_system = tivoli ]]
4113	then
4114	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4115	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4116	# GELEGT WERDEN
4117	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4118	chmod g+rx $tmp_data_catalog
4119	if [[ $files_for_pes = false ]]
4120	then
4121	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4122	else
4123	mkdir $tmp_data_catalog/${frelout[$i]}
4124	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4125	fi
4126
4127	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4128	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4129	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4130	if [[ $files_for_pes = false ]]
4131	then
4132	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4133	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4134	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4135	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4136	else
4137	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4138	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4139	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4140	fi
4141
4142	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
4143	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4144	file_saved=true
4145
4146	elif [[ $archive_system = ut ]]
4147	then
4148	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4149	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4150	# GELEGT WERDEN
4151	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4152	chmod g+rx $tmp_data_catalog
4153	if [[ $files_for_pes = false ]]
4154	then
4155	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4156	else
4157	mkdir $tmp_data_catalog/${frelout[$i]}
4158	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4159	fi
4160
4161	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4162	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4163	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4164	if [[ $files_for_pes = false ]]
4165	then
4166	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4167	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4168	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4169	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4170	else
4171	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4172	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4173	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4174	fi
4175
4176	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
4177	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4178	file_saved=true
4179
4180	else
4181	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
4182	archive_save=false
4183	fi
4184	if [[ $file_saved = true ]]
4185	then
4186	if [[ $files_for_pes = false ]]
4187	then
4188	cat /dev/null > ${pathout[$i]}
4189	else
4190	mkdir -p ${pathout[$i]}
4191	fi
4192	fi
4193	fi
4194
4195	# APPEND AUF LOKALER MASCHINE
4196	if [[ "${actionout[$i]}" = "a" ]]
4197	then
4198	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4199	then
4200	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}.${extout[$i]}\n"
4201	cat ${localout[$i]} >> ${pathout[$i]}.${extout[$i]}
4202	else
4203	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
4204	cat ${localout[$i]} >> ${pathout[$i]}
4205	fi
4206	fi
4207
4208	# KOPIEREN AUF LOKALER MASCHINE
4209	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
4210	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
4211	then
4212
4213	# KOPIEREN AUF EINPROZESSORMASCHINE
4214	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4215	then
4216	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
4217	if [[ $link_local_output = true ]]
4218	then
4219	printf " using ln -f\n"
4220	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4221	fi
4222	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4223	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
4224	then
4225	if [[ $link_local_output = true ]]
4226	then
4227	printf " ln failed, using cp...\n"
4228	fi
4229	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4230	fi
4231	else
4232	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
4233	if [[ $link_local_output = true ]]
4234	then
4235	printf " using ln -f\n"
4236	ln -f ${localout[$i]} ${pathout[$i]}
4237	fi
4238	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4239	if [[ ! -f "${pathout[$i]}" ]]
4240	then
4241	if [[ $link_local_output = true ]]
4242	then
4243	printf " ln failed, using cp...\n"
4244	fi
4245	cp ${localout[$i]} ${pathout[$i]}
4246	fi
4247	fi
4248
4249	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
4250	then
4251
4252	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
4253	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
4254	# WIRD DANN KOPIERT
4255	# PER MOVE UMBENANNT WERDEN
4256	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4257	if [[ $link_local_output = true ]]
4258	then
4259	printf " using ln -f\n"
4260	mkdir ${pathout[$i]}
4261	cd ${localout[$i]}
4262	for file in $(ls *)
4263	do
4264	ln -f $file ${pathout[$i]}
4265	done
4266	cd $TEMPDIR
4267	fi
4268	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4269	if [[ ! -f "${pathout[$i]}/_0000" ]]
4270	then
4271	if [[ $link_local_output = true ]]
4272	then
4273	printf " ln failed for .../_0000, using cp...\n"
4274	fi
4275	cp -r ${localout[$i]} ${pathout[$i]}
4276	fi
4277
4278	fi
4279	fi
4280	done
4281	if (( i != 0 ))
4282	then
4283	if [[ $transfer_problems = true ]]
4284	then
4285	printf "\n$striche\n *** OUTPUT-files saved"
4286	printf "\n +++ WARNING: some data transfers failed! \n"
4287	else
4288	printf "\n$striche\n *** all OUTPUT-files saved \n"
4289	fi
4290	fi
4291
4292
4293	# EVENTUELL FOLGEJOB STARTEN
4294	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4295	if [[ -f CONTINUE_RUN ]]
4296	then
4297
4298	if [[ $archive_save = true ]]
4299	then
4300
4301	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4302	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4303	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4304	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4305	# HANDEN
4306	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4307	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4308	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4309	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4310	then
4311	mc=`echo $mc \| sed 's/#/f/g'`
4312	fi
4313
4314
4315	# JOB STARTEN
4316	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4317	echo " $mc"
4318	printf "\n$striche\n"
4319	if [[ $localhost != $fromhost ]]
4320	then
4321
4322	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibms ]]
4323	then
4324	echo "*** ssh will be used to initiate restart-runs!"
4325	echo " return_addres=\"$return_addres\" "
4326	echo " return_username=\"$return_username\" "
4327	if [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4328	then
4329	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export LD_LIBRARY_PATH=\$LD_LIBRARY_PATH:/muksoft/packages/intel/Compiler/11.1/073/lib/intel64/;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4330	else
4331	if [[ $localhost = ibmkisti ]]
4332	then
4333	ssh $usern@gaiad "ssh $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4334	else
4335	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4336	fi
4337	fi
4338	else
4339	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4340	locat=restart; exit
4341	fi
4342
4343	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4344	# DER AKTUELLE JOB ENDET
4345	if [[ $queue = special1q ]]
4346	then
4347	sleep 120
4348	else
4349	sleep 30
4350	fi
4351
4352	else
4353
4354	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4355	# RUFEN WERDEN, AUSSER AUF lcfimm
4356	cd $LOCAL_PWD
4357	if [[ $localhost = lcfimm ]]
4358	then
4359	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4360	else
4361	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4362	fi
4363	cd - > /dev/null
4364	fi
4365	printf "\n$striche\n *** restart-run initiated \n"
4366
4367
4368	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4369	# GEHOLT WORDEN SIND, LOESCHEN
4370	(( i = 0 ))
4371	while (( i < iin ))
4372	do
4373	(( i = i + 1 ))
4374	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4375	then
4376	rm -r $tmp_data_catalog/${frelin[$i]}
4377	fi
4378	done
4379
4380	else
4381
4382	printf "\n +++ no restart-run possible, since errors occured"
4383	printf "\n during the archive process"
4384	fi
4385
4386	fi
4387
4388
4389
4390	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4391	if [[ "$email_notification" != "none" ]]
4392	then
4393
4394	if [[ $localhost != $fromhost ]]
4395	then
4396	if [[ -f CONTINUE_RUN ]]
4397	then
4398	echo "PALM restart run necessary" > email_text
4399	echo "description header of actual run:" >> email_text
4400	cat CONTINUE_RUN >> email_text
4401	echo "mrun-command to restart:" >> email_text
4402	echo "$mc" >> email_text
4403	else
4404	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4405	fi
4406	mail $email_notification < email_text
4407	printf "\n *** email notification sent to \"$email_notification\" "
4408	fi
4409	fi
4410
4411
4412
4413	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4414	cd $HOME
4415	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4416
4417	else
4418
4419
4420	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4421	# CHENDE AKTIONEN DURCHGEFUEHRT
4422
4423	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4424	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q \$queue -R $return_addres -U $return_username -u $remote_username"
4425	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4426	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4427	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4428	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4429	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4430	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4431	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4432	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4433	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4434	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4435	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4436	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4437	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4438	if [[ $use_openmp = true ]]
4439	then
4440	mrun_com=${mrun_com}" -O $threads_per_task"
4441	fi
4442	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4443	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
4444	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4445	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4446	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4447	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4448	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4449	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4450	[[ "$max_par_io_str" != "" ]] && mrun_com=${mrun_com}" -w $max_par_io_str"
4451	if [[ $do_remote = true ]]
4452	then
4453	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4454	fi
4455
4456
4457	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4458	jobfile=jobfile.$RANDOM
4459
4460
4461	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4462	echo "mkdir $TEMPDIR" >> $jobfile
4463	echo "cd $TEMPDIR" >> $jobfile
4464
4465
4466	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4467	if [[ $do_trace = true ]]
4468	then
4469	echo "set -x" >> $jobfile
4470	else
4471	echo "set +vx" >> $jobfile
4472	fi
4473
4474
4475	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4476	# DATEI FUER DEN JOB
4477	if [[ $( echo $host \| cut -c1-5 ) = lcsgi \|\| $host = ibmkisti ]]
4478	then
4479
4480	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4481	# KOPIEREN
4482	if [[ $restart_run != true ]]
4483	then
4484	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4485	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4486	fi
4487
4488	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4489	# (BEI JOBS AUF LOKALEM RECHNER REICHT CP)
4490	echo "set -x" >> $jobfile
4491	if [[ $host = $localhost ]]
4492	then
4493	echo "cp -r $working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4494	else
4495	if [[ $host != ibmkisti ]]
4496	then
4497	echo "scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4498	else
4499	# on KISTI's IBM firewall is only opened on interactive node
4500	echo "localdir=\`pwd\`" >> $jobfile
4501	echo "ssh $remote_username@gaiad \"cd \$localdir; scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
4502	fi
4503	fi
4504	echo "export SOURCES_COMPLETE=true" >> $jobfile
4505
4506	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4507	# ARBEITSVERZEICHNIS VERSCHIEBEN
4508	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4509	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4510	echo "execute_mrun=true" >> $jobfile
4511	echo " " >> $jobfile
4512
4513	else
4514
4515	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4516	# SOWIE GEGEBENENFALLS DES MAKEFILES
4517	if [[ $do_compile = true ]]
4518	then
4519
4520	source_catalog=SOURCES_FOR_RUN_$fname
4521
4522	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4523	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4524	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4525	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4526	echo "export SOURCES_COMPLETE=true" >> $jobfile
4527	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4528
4529	for filename in $source_list
4530	do
4531	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4532	echo "cat > $filename << \"%END%\"" >> $jobfile
4533	cat $source_catalog/$filename >> $jobfile
4534	echo " " >> $jobfile
4535	echo "%END%" >> $jobfile
4536	echo " " >> $jobfile
4537	done
4538
4539	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4540	echo "cat > Makefile << \"%END%\"" >> $jobfile
4541	cat $source_catalog/Makefile >> $jobfile
4542	echo " " >> $jobfile
4543	echo "%END%" >> $jobfile
4544	echo " " >> $jobfile
4545
4546	echo "cd - > /dev/null" >> $jobfile
4547
4548	fi
4549
4550
4551	# ABSPEICHERN DER KONFIGURATIONSDATEI
4552	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4553	echo "cat > $config_file << \"%END%\"" >> $jobfile
4554	cat $config_file >> $jobfile
4555	echo "%END%" >> $jobfile
4556	echo " " >> $jobfile
4557
4558
4559	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
4560	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4561	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
4562	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
4563	echo "%END%" >> $jobfile
4564	echo "chmod u+x $mrun_script_name" >> $jobfile
4565	echo "execute_mrun=true" >> $jobfile
4566	echo " " >> $jobfile
4567
4568	fi
4569
4570
4571	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
4572	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
4573	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
4574	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
4575	if [[ $do_remote = true ]]
4576	then
4577	(( i = 0 ))
4578	while (( i < iin ))
4579	do
4580	(( i = i + 1 ))
4581	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
4582	if [[ "${transin[$i]}" = job ]]
4583	then
4584	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
4585	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
4586	echo " " >> $jobfile
4587	echo "%END%" >> $jobfile
4588	else
4589	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
4590	fi
4591
4592	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
4593	echo "if [[ \$? = 1 ]]" >> $jobfile
4594	echo "then" >> $jobfile
4595	echo " echo \" \" " >> $jobfile
4596	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
4597	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
4598	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
4599	echo " execute_mrun=false" >> $jobfile
4600	echo "fi" >> $jobfile
4601	done
4602	fi
4603
4604	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
4605	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
4606	echo "LOCAL_PWD=$working_directory" >> $jobfile
4607	echo "export LOCAL_PWD" >> $jobfile
4608
4609	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
4610	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
4611	echo "export LOCAL_MRUN_PATH" >> $jobfile
4612
4613	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
4614	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
4615	then
4616	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
4617	fi
4618
4619	# MRUN AUF ZIELRECHNER AUFRUFEN (queue is workaround for ibmkisti)
4620	echo "set -x" >> $jobfile
4621	echo "queue=$queue" >> $jobfile
4622	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
4623
4624	echo 'ls -al; echo `pwd`' >> $jobfile
4625	echo "cd \$HOME" >> $jobfile
4626	echo "rm -rf $TEMPDIR" >> $jobfile
4627
4628
4629
4630
4631	# JOB PER SUBJOB STARTEN
4632	if [[ $silent = false ]]
4633	then
4634	printf "\n "
4635	else
4636	printf "\n\n"
4637	fi
4638
4639	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $jobfile
4640	rm -rf $jobfile
4641
4642
4643	fi # ENDE REMOTE-TEIL
4644
4645
4646
4647	# ENDE DER PROZEDUR

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source: palm/trunk/SCRIPTS/mrun @ 784

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