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source: palm/trunk/SCRIPTS/mrun @ 726

Last change on this file since 726 was 721, checked in by maronga, 14 years ago
Bugfix in MRUN for runs with mpt
Property svn:keywords set to `Id Rev`
File size: 174.8 KB

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1	#!/bin/ksh
2	# mrun - script for running PALM jobs
3	# $Id: mrun 721 2011-04-06 15:01:42Z suehring $
4
5	# Procedure for interactive/batch PALM runs (initial runs and automatic
6	# restart runs)
7
8	# Last changes:
9	# 03/03/94 - Siggi - Entwicklungsbeginn
10	# 21/03/94 - Siggi - Entwicklungsabschluss (Version 1.0)
11	# 09/12/94 - Siggi - allexport unterbunden; statt dessen werden jetzt ein-
12	# zelne Variable exportiert. Dies ist noetig, weil an-
13	# sonsten irgendein Speicher ueberlaeuft und von mrun
14	# aufgerufene Programme (z.B. stageout) mit Fehlern
15	# abbrechen (too many arguments)
16	# 20/06/95 - Siggi - noclobber muss explizit abgeschaltet, da jetzt
17	# defaultmaessig im RRZN-Profile eingeschaltet
18	# 10/06/97 - Siggi - Zusaetzliche Option -C bei cpp, damit // nicht
19	# wegfallen
20	# 25/04/00 - Siggi - Version 1.5
21	# remote_addres und remote_user in return_addres bzw.
22	# return_username umbenannt, return_username wird dem
23	# mrun-Aufruf im Job ueber Option -U mitgegeben.
24	# Neue Variable remote_username, die beim interaktiven
25	# mrun-Aufruf zwingend ueber die neue Option -u oder
26	# in der Konfigurationsdatei angegeben werden muss.
27	# 08/02/01 - Siggi - Alle mrun-Meldungen ins englische uebersetzt,
28	# Version 1.7
29	# 05/05/02 - Siggi - Uebersetzungen mittels make-Mechanismus moeglich
30	# 21/11/02 - Siggi - ENV-Variable XLFRTEOPTS wird vor Ausfuehrung auf
31	# IBM gesetzt, um Record-Laenge der NAMELIST-Dateien,
32	# zu bestimmen; Praeprozessoroptionen haben nun alle
33	# die Form -Dtext=text, weil auf IBM sonst text durch
34	# die leere Zeichenkette ersetzt wird
35	# 01/08/03 - Siggi - Test of implementing dvrp+1PE on ibm
36	# 07/01/04 - Siggi - additional preprocessor directive for ibm included
37	# (-D$OMP=OMP) in order to avoid problems with
38	# OMP_NUM_THREADS
39	# 04/01/05 - Siggi - archiving on hanni and berni is done in separate
40	# tar files, one for each node used
41	# 07/01/04 - Siggi - old code for t3e, vpp and hpcs eliminated
42	# 09/01/05 - Siggi - workaround for getting the IP address on gfdl3
43	# 17/01/05 - Siggi - job for data transfer to local machine now within
44	# job class c1 (HLRN)
45	# 27/01/05 - Siggi - IP address workaround for gfdl3 removed
46	# 28/01/05 - Siggi - tar-filenames on $PERM (HLRN) now include the
47	# base filename and cycle number
48	# 16/02/05 - Gerald - hababai validated
49	# 14/03/05 - Siggi - abort on NEC after first runtime error (F_ERRCNT)
50	# 29/03/05 - Marcus - berni*-en0 validated
51	# 21/04/05 - Siggi - transfer-job-protocol for avs-data is no more stored
52	# 24/04/05 - Siggi - netcdf support on lcmuk
53	# 25/04/05 - Siggi - netcdf support on gfld3 (decalpha)
54	# 11/05/05 - Siggi - files with non-numeric extensions (.xxx after cycle
55	# number) can now be used within interactive runs
56	# 12/05/05 - Siggi - netcdf support on ibm
57	# 13/05/05 - Siggi - error in tar-filenames on $PERM (HLRN) removed
58	# 18/05/05 - Siggi - netcdf support on nec
59	# 24/05/05 - Siggi - netcdf support on ibms
60	# 14/06/05 - Siggi - sleep interval after submit of restart job increased
61	# to 30 seconds
62	# 28/06/05 - Siggi - bora adjusted to new intel compiler (LD_LIBRARY_
63	# PATH is temporarily set)
64	# 07/09/05 - Siggi - setting of MP_EAGER_LIMIT switched off because it
65	# caused warnings in the job protocol
66	# 20/10/05 - Siggi - update of netcdf-version on decalpha (gfdl3)
67	# 25/10/05 - Siggi - error in listing files for getting the cycle number
68	# removed
69	# 26/10/05 - Siggi - new paths for dvrp-library, transfer of catalogs
70	# realized by file attribute trpe
71	# 28/10/05 - Siggi - if existing, the file extension is output in case
72	# of missing input file - no job abort in case of
73	# missing input files with file extensions
74	# (preliminary solution)
75	# 31/10/05 - Siggi - data transfer from nech now within seperate job
76	# 04/11/05 - Siggi - netcdf 3.6.0-p1 on ibmh/ibmb
77	# 07/12/05 - Siggi - gallego and elephanta admitted
78	# 30/12/05 - Siggi - gfdl5 (ibmy) admitted
79	# 10/01/06 - Siggi - cpp directive for NetCDF 64bit support
80	# 20/01/06 - Siggi - cpp directive for ibmy
81	# 09/02/06 - Siggi - ibmy admitted for batch mode
82	# 13/04/06 - Siggi - ostria admitted
83	# 18/04/06 - Siggi - usage of OpenMP implemented (additional option -O)
84	# 10/05/06 - Siggi - environment variable XLSMPOPTS set on IBM for
85	# optimization of OpenMP runs (option stacksize is
86	# necessary for large gridpoint numbers because
87	# otherwise a segmentation fault occurs)
88	# 23/05/05 - Siggi - lctit (SUN Fire X4600) admitted
89	# 21/08/06 - Siggi - standard mrun path on scirocco is as on bora
90	# 23/08/06 - Siggi - netcdf support for scirocco (notebook)
91	# 20/09/06 - Marcus - add DVRP library on nech
92	# 24/10/06 - Siggi - Environment variables for PALM steering are written
93	# on local NAMELIST file ENVPAR
94	# 24/11/06 - Siggi - levanto admitted, maestro switched to ifc 9.1
95	# 28/11/06 - Siggi - call to interpret_config.x_levanto because of SuSe 10
96	# 06/02/07 - Siggi - add DVRP library on lcmuk
97	# 07/02/07 - Siggi - revision of source code handling, source code is
98	# now expected in directory given by source_path and
99	# not in the current working directory, source code
100	# files provided in add_source_path are allways
101	# compiled, source code to be compiled is allways
102	# sampled in SOURCES_FOR_RUN_$fname which is a
103	# subdirectory of the current working directory,
104	# -s TEST changed to -s WRITE_PERMIT or -s WP,
105	# adapted for RIAM (neck)
106	# bugfix for cycle number of output file (extout)
107	# all hpmuk-related code removed
108	# 14/02/07 - Siggi - dvrp support for neck added
109	# 28/02/07 - Siggi - empty lines in configuration file are accepted
110	# mrun_path replaced by PALM_BIN,
111	# all machines are calling interpret_config.x
112	# 14/03/07 - Siggi - fimm admitted, revision number added to terminal
113	# output
114	# 16/03/07 - Siggi - adjustments for lctit
115	# 29/03/07 - Siggi - global revision transfered to batch job by new
116	# option -G
117	# 30/03/07 - Siggi - compilation "by hand" removed, cpp-directives/options
118	# + netcdf/dvrp-options are read from configuration
119	# file, host identifier (local_host) is read from
120	# config file, code related to ftp filetransfer
121	# removed (incl. option -f)
122	# 19/06/07 - Siggi - time limit for cdata jobs increased
123	# 25/07/07 - Siggi - two sets of executables can be started on lcmuk,
124	# if new option -Y (coupling) is given,
125	# output of executables to aout_output removed,
126	# messages are immediately written to stdout instead
127	# 03/08/07 - Marcus - add XOPT="-X $numprocs" for lcfimm
128	# 09/08/07 - Marcus - workaround on lcfimm to propagate environment
129	# variables out to the nodes in coupled mode -disabled-
130	# 13/08/07 - Marcus - start local restart jobs per ssh on lcfimm
131	# 28/08/07 - Marcus - completely remove workaround on lcfimm to propagate
132	# environment variables out to the nodes in coupled mode
133	# 15/10/07 - Siggi - Preliminary adjustments for lctit, based on Jin's
134	# suggestions
135	# 19/10/07 - Marcus - further adjustments for lctit: add new optional
136	# argument -g group_number, admit all sla* node_usage
137	# queues
138	# 30/10/07 - Marcus - further adjustments for queues on lctit
139	# 14/02/08 - Bjoern - link of restart files with long file name possible
140	# 28/02/08 - Marcus - If environment variable link_local_output is set to
141	# true, mrun tries "ln -f" on local output and resorts
142	# to "cp" or "cp -r" on error
143	# 15/04/08 - Siggi - argument -c introduced to most of the subjob calls,
144	# which allows the user to choose his own job catalog
145	# by setting job_catalog in the configuration file
146	# (default is ~/job_queue),
147	# workaround for mpiexec with -env option,
148	# adjustments for lcxt4 (Bergen Center for Computational
149	# Science)
150	# 22/05/08 - Marcus - If environment variable link_local_input is set to
151	# true, mrun tries "ln -f" on local input and resorts
152	# to "cp" or "cp -r" on error
153	# 27/05/08 - Siggi - PATH is set to PALM_BIN everywhere (missing so far)
154	# 14/07/08 - Siggi - adjustments for lcsgih
155	# 08/08/08 - Marcus - typo removed in lcxt4 branch
156	# 17/09/08 - Siggi - restart mechanism adjusted for lcsgi
157	# 02/10/08 - BjornM - argument "-Y" modified, adjustments for coupled runs
158	# 21/10/08 - Siggi - bugfix for the case that -K has more than one
159	# argument
160	# 08/11/08 - Siggi - bugfix for depository path settings in configuration
161	# file
162	# 11/11/08 - Siggi - rules for using user code files changed: user
163	# code splitted into one file per subroutine,
164	# user can provide his/her own makefile, only
165	# default source-code filenames are allowed
166	# 14/11/08 - Siggi - cond1 and cond2 are part of the depository name
167	# 08/01/09 - Siggi - mpi module on sgi machines to be used can be set
168	# with environment variable mpilib
169	# 13/01/09 - Siggi - totalview on hice/bice can be used in debug mode
170	# using environment variable totalview
171	# 25/02/09 - Siggi - cputime-option (-t) is allowed to be omitted for
172	# interactive runs
173	# 05/03/09 - Siggi - adjustments for new NEC-SX9 at RIAM (necriam)
174	# 16/03/09 - Siggi - dvrp_lib, dvrp_inc replaced by dvr_lib, dvr_inc,
175	# dvr streaming server is automatically started using
176	# new variable dvr_server and a configuration file
177	# .dvrserver.config,
178	# processing of dvr output files using new script
179	# process_dvr_output implemented, in order to make
180	# dvr application more user friendly
181	# 20/03/09 - Marcus - update of n1ge command for lctit
182	# 16/04/09 - Siggi - new option -y for precursor (uncoupled) ocean runs
183	# to be followed by a coupled atmosphere-ocean run
184	# 21/04/09 - Siggi - adjustments for new IBM at DKRZ, which is now ibmh
185	# 24/06/09 - BjornM - adjustments for coupled/precursor runs on ibmy
186	# 08/07/09 - Siggi - default value for email_notification is none,
187	# option -e added to subjob
188	# 19/08/09 - Marcus - MPI debug option
189	# 21/08/09 - Marcus - totalview on hice/bice also available for mvapich2
190	# 25/08/09 - BjornM - adpated for lck
191	# 26/08/09 - Siggi - additional environment variables for mpt on ice2
192	# 26/08/09 - Marcus - adjustment for ice2 on lcsgib
193	# 29/09/09 - Siggi - default value for archiving is false, option "-A"
194	# switches on archiving, archiving on SGI-ICE enabled
195	# 16/10/09 - Carolin- adjustments for archiving on SGI-ICE of binary files;
196	# adjustment for special1q
197	# 18/12/09 - Carolin- modification of archiving (permq)
198	# 01/02/10 - Siggi - adapted for lcxt5m and lckyoto (Fujitsu HX600)
199	# 03/02/10 - Siggi - make options (mopts) to be set by configuration file
200	# implemented
201	# 08/02/10 - Siggi - loading of modules now controlled via configuration
202	# file (modules)
203	# 02/03/10 - Siggi - for each block in the configuration file, separate
204	# utility programs are used, combine_plot_fields is
205	# directly called and must not be given by an output
206	# command in the configuration file any more
207	# 15/06/10 - Rieke - ssh from compute nodes to login nodes on hosts
208	# lcsgih/lcsgib is done using the names
209	# hicegate0/bicegate0 instead of the IP addresses
210	# 17/08/10 - BjornM - adjustments for interactive runs on lcxt4
211	# 07/09/10 - Siggi - bugfix for wrong netcdf/3.6.3 module on lcsgi
212	# 08/12/10 - Siggi - new handling of openmp/hybrid runs, option -O
213	# has now argument threads_per_task
214	# adjustments for Kyushu Univ. (lcrte, ibmku)
215	# 14/12/10 - Siggi - adjustments for new Tsubame system at Tokyo
216	# institute of technology (lctit)
217	# 23/12/10 - Micha - different number of processors in ocean and atmosphere
218	# is now allowed
219	# 02/02/10 - Siggi - further adjustments on Tsubame and concerning openMP
220	# usage
221	# 09/03/10 - Siggi - adjustments for ibmkisti, mpt bugfix for netCDF4
222	# usage, totalview usage extended
223	# 17/03/11 - Siggi - adjustments for openmp usage on ibmkisti
224	# 03/04/11 - Micha - added lckordi
225	# 06/04/11 - BjornM - bugfix for runs with mpt on lcsgi
226
227
228
229	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
230
231	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
232	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
233	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
234
235	AddFilenames=""
236	additional_conditions=""
237	add_source_path=""
238	afname=""
239	archive_save=true
240	archive_system=none
241	compiler_name=""
242	cond1=""
243	cond2=""
244	config_file=.mrun.config
245	coupled_dist=""
246	coupled_mode="mpi1"
247	cpp_opts=""
248	cpp_options=""
249	cpumax=0
250	cpurest=0
251	delete_temporary_catalog=true
252	do_batch=false
253	do_compile=true
254	do_remote=false
255	do_stagein=true
256	do_stageout=true
257	do_trace=false
258	email_notification="none"
259	exclude=""
260	executable=""
261	execution_error=false
262	fimm=false
263	fname=test
264	fromhost=""
265	global_revision=""
266	group_number=none
267	host=""
268	host_file=""
269	hp=""
270	ignore_archive_error=false
271	input_list=""
272	interpreted_config_file=""
273	job_catalog="~/job_queue"
274	job_on_file=""
275	keep_data_from_previous_run=false
276	link_local_input=false
277	link_local_output=false
278	localhost_realname=$(hostname)
279	local_compile=false
280	local_dvrserver_running=.FALSE.
281	locat=normal
282	mainprog=""
283	makefile=""
284	mc=$0
285	while [[ $(echo $mc \| grep -c "/") != 0 ]]
286	do
287	mc=`echo $mc \| cut -f2- -d"/"`
288	done
289	module_calls=""
290	mrun_script_name=$mc
291	netcdf_inc=""
292	netcdf_lib=""
293	netcdf_support=false
294	node_usage=default
295	numprocs=""
296	numprocs_atmos=0
297	numprocs_ocean=0
298	OOPT=""
299	openmp=false
300	output_list=""
301	package_list=""
302	punkte="..........................................................."
303	queue=none
304	read_from_config=""
305	restart_run=false
306	if [[ `hostname` = rte10 ]]
307	then
308	return_addres=133.5.185.60
309	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
310	elif [[ `hostname` = climate0 ]]
311	then
312	return_addres=165.132.26.68
313	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
314	else
315	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
316	fi
317	return_password=""
318	return_username=$LOGNAME
319	remotecall=false
320	remote_username=""
321	run_coupled_model=false
322	run_mode=""
323	scirocco=false
324	store_on_archive_system=false
325	striche=" ----------------------------------------------------------------------------"
326	silent=false
327	source_list=""
328	source_path=SOURCE
329	tasks_per_node=""
330	threads_per_task=1
331	tmpcreate=false
332	tmp_data_catalog=""
333	transfer_problems=false
334	usern=$LOGNAME
335	use_openmp=false
336	working_directory=`pwd`
337	TOPT=""
338	XOPT=""
339	zeit=$( date \| cut -c 12-19 )
340
341	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
342	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
343
344	typeset -R30 calltime
345	typeset -L20 spalte1
346	typeset -L40 spalte2
347	typeset -L60 spalte3
348	typeset -L35 string1=`date`
349	typeset -L12 string2=$usern
350	typeset -L12 string3=$localhost_realname
351	typeset -L12 string4
352	typeset -L12 string5
353	typeset -L30 version="MRUN 2.0 Rev$Rev: 721 $"
354
355
356
357	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
358	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
359
360	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
361	# EXPORTIERT WERDEN
362	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
363	export group_number input_list memory numprocs output_list queue run_mode
364
365
366
367	# FEHLERBEHANDLUNG
368	# BEI EXIT:
369	trap 'rm -rf $working_directory/tmp_mrun
370	if [[ $locat != localhost ]]
371	then
372	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
373	# then
374	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
375	#MRUN-calls on $localhost
376	#
377	#date and time user localhost remotehost termination mrun-command
378	#--------------------------------------------------------------------------------------------------------------------
379	#%STATEND%
380	# chmod 666 ${mrun_path}/statistik/mrun_statistik
381	# fi
382	#
383	# # EINTRAG IN DIE STATISTIK-DATEI
384	# string4=$host
385	# string5=$locat
386	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
387	# then
388	# if [[ $do_batch = true ]]
389	# then
390	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
391	# else
392	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
393	# fi
394	# fi
395	echo " " > /dev/null
396	fi
397
398	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
399	then
400
401	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
402	(( i = 0 ))
403	while (( i < iec ))
404	do
405	(( i = i + 1 ))
406	printf "\n *** Execution of ERROR-command:\n"
407	printf " >>> ${err_command[$i]}\n"
408	eval ${err_command[$i]}
409	done
410	if [[ -n $interpreted_config_file ]] then
411	rm -rf $interpreted_config_file
412	fi
413	if [[ -n .mrun_environment ]] then
414	rm -rf .mrun_environment
415	fi
416	if [[ $tmpcreate = true ]]
417	then
418	printf "\n *** Contents of \"$TEMPDIR\":\n"
419	ls -al; cd
420	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
421	fi
422	if [[ "$dvrserver_id" != "" ]]
423	then
424	echo "+++ killing dvrserver_id=$dvrserver_id"
425	kill $dvrserver_id
426	fi
427	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
428	then
429	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
430	fi
431	printf "\n\n+++ MRUN killed \n\n"
432	elif [[ $locat != control_c ]]
433	then
434	printf "\n\n --> all actions finished\n\n"
435	printf " Bye, bye $usern !!\n\n"
436	fi' exit
437
438
439	# BEI TERMINAL-BREAK:
440	trap 'rm -rf $working_directory/tmp_mrun
441	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
442	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
443	then
444	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
445	fi
446	if [[ "$dvrserver_id" != "" ]]
447	then
448	echo "+++ killing dvrserver_id=$dvrserver_id"
449	kill $dvrserver_id
450	fi
451	printf "\n+++ MRUN killed by \"^C\" \n\n"
452	locat=control_c
453	exit
454	' 2
455
456
457	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
458	# BEEN SET
459	if [[ "$PALM_BIN" = "" ]]
460	then
461	printf "\n +++ environment variable PALM_BIN has not been set"
462	printf "\n please set it to the directory where the PALM scripts are located"
463	locat=palm_bin; exit
464	fi
465	export PATH=$PALM_BIN:$PATH
466
467
468
469	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
470	# FUER FOLGEJOBS BENOETIGT WIRD
471	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vxX:yY: option
472	do
473	case $option in
474	(a) afname=$OPTARG;;
475	(A) store_on_archive_system=true; mc="$mc -A";;
476	(b) do_batch=true; mc="$mc -b";;
477	(B) delete_temporary_catalog=false; mc="$mc -B";;
478	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
479	(C) restart_run=true; mc="$mc -C";;
480	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
481	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
482	(F) job_on_file="-D"; mc="$mc -F";;
483	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
484	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
485	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
486	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
487	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
488	(I) ignore_archive_error=true; mc="$mc -I";;
489	(k) keep_data_from_previous_run=true; mc="$mc -k";;
490	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
491	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
492	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
493	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
494	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
495	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
496	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
497	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
498	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
499	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
500	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
501	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
502	(S) read_from_config=false; mc="$mc -S";;
503	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
504	(T) tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
505	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
506	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
507	(v) silent=true; mc="$mc -v";;
508	(x) do_trace=true;set -x; mc="$mc -x";;
509	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
510	(y) ocean_file_appendix=true; mc="$mc -y";;
511	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
512	(\?) printf "\n +++ unknown option $OPTARG \n"
513	printf "\n --> type \"$0 ?\" for available options \n"
514	locat=parameter;exit;;
515	esac
516	done
517
518
519	# EVTL. POSITIONSPARAMETER EINLESEN
520	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
521	shift OPTIND-1
522
523
524	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
525	if [[ "$1" = "?" ]]
526	then
527	(printf "\n *** mrun can be called as follows:\n"
528	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. <modus>\n"
529	printf "\n Description of available options:\n"
530	printf "\n Option Description Default-Value"
531	printf "\n -a base name of input files equiv. -d"
532	printf "\n -A archiving when using file-attribute fl"
533	printf "\n -b batch-job on local machine ---"
534	printf "\n -B do not delete temporary directory at end ---"
535	printf "\n -c configuration file .mrun.config"
536	printf "\n -d base name of files attached to program test"
537	printf "\n -D preprocessor(cpp)-directives \"\" "
538	printf "\n -F create remote job file only ---"
539	printf "\n -h execution host $localhost_realname"
540	printf "\n -i INPUT control list \"\" "
541	printf "\n -I archiving errors of previous batch-jobs"
542	printf "\n will be ignored"
543	printf "\n -k keep data from previous run"
544	printf "\n -K additional conditions for controling"
545	printf "\n usage of conditional code and"
546	printf "\n env-variables in configuration file \"\" "
547	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
548	printf "\n -M Makefile name Makefile"
549	printf "\n -n node usage (shared/not_shared) depending on -h"
550	printf "\n -o OUTPUT control list \"\" "
551	printf "\n -O use OpenMP ---"
552	printf "\n -p software package list \"\" "
553	printf "\n -q queue \"$queue\" "
554	printf "\n -r run control list (combines -i -o) \"\" "
555	printf "\n -s filenames of routines to be compiled \"\" "
556	printf "\n must end with .f, .f90, .F, or .c !"
557	printf "\n use \"..\" for more than one file and wildcards"
558	printf "\n -s TEST compiles all files with w-permit"
559	printf "\n -S config file interpreted by shellscript ---"
560	printf "\n -t allowed cpu-time in seconds (batch) 0"
561	printf "\n -T tasks per node depending on -h"
562	printf "\n -u username on remote machine \"\" "
563	printf "\n -v no prompt for confirmation ---"
564	printf "\n -x tracing of mrun for debug purposes ---"
565	printf "\n -X # of processors (on parallel machines) 1"
566	printf "\n -y add appendix \"_O\" to all local output"
567	printf "\n files (ocean precursor runs followed by"
568	printf "\n coupled atmosphere-ocean runs) ---"
569	printf "\n -Y run coupled model, \"#1 #2\" with"
570	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
571	printf "\n "
572	printf "\n Possible values of positional parameter <modus>:"
573	printf "\n \"?\" - this outline \n\n") \| more
574	exit
575	elif [[ "$1" != "" ]]
576	then
577	printf "\n +++ positional parameter $1 unknown \n"
578	locat=parameter; exit
579	fi
580
581
582
583	# KURZE STARTMELDUNG
584	printf "\n*** $version "
585	printf "\n will be executed. Please wait ..."
586
587
588
589	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
590	if [[ ! -f $config_file ]]
591	then
592	printf "\n\n +++ configuration file: "
593	printf "\n $config_file"
594	printf "\n does not exist"
595	locat=connect; exit
596	fi
597
598
599	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
600	line=""
601	grep "%host_identifier" $config_file > tmp_mrun
602	while read line
603	do
604	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
605	then
606	HOSTNAME=`echo $line \| cut -d" " -s -f2`
607	host_identifier=`echo $line \| cut -d" " -s -f3`
608	if [[ $localhost_realname = $HOSTNAME ]]
609	then
610	localhost=$host_identifier
611	break
612	fi
613	fi
614	done < tmp_mrun
615
616	if [[ "$localhost" = "" ]]
617	then
618	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
619	printf "\n for local host \"$localhost_realname\"."
620	printf "\n Please add line"
621	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
622	printf "\n to the configuration file."
623	locat=localhost; exit
624	fi
625
626
627	# HOSTSPEZIFISCHE VARIABLEN SETZEN
628	case $localhost_realname in
629	(r1\|r2\|h01\|b01) archive_system=tivoli;;
630	(cs*) archive_system=ut;;
631	(fimm.bccs.uib.no) fimm=true;;
632	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
633	(scirocco) scirocco=true;;
634	esac
635
636
637
638	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
639	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
640	[[ "$afname" = "" ]] && afname=$fname
641
642
643	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
644	if [[ "$run_mode" != "" ]]
645	then
646	input_list="$input_list $run_mode"
647	output_list="$output_list $run_mode"
648	fi
649
650
651	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
652	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
653	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
654	# STARTET)
655	if [[ "$fromhost" = "" ]]
656	then
657	fromhost=$localhost
658	fi
659
660
661	# PRUEFEN, OB MRUN NUR TESTWEISE AUF DER LOKALEN MASCHINE KOMPILIEREN SOLL
662	if [[ "$source_list" = LOCAL_COMPILE_TEST ]]
663	then
664	source_list=TEST
665	local_compile=true
666	host=$localhost
667	fi
668
669
670	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
671	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
672	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
673	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
674	if [[ -n $host && "$host" != $localhost ]]
675	then
676	do_batch=true
677	do_remote=true
678	case $host in
679	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|nech\|necriam\|lckyoto\|lcsgib\|lcsgih\|unics\|lcxt4\|lcxt5m\|lck\|lckordi) true;;
680	(*) printf "\n"
681	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
682	printf "\n is not available"
683	locat=nqs; (( iec = 0 )); exit;;
684	esac
685	else
686	host=$localhost
687	fi
688
689
690	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
691	if [[ -n $additional_conditions ]]
692	then
693	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
694	cond1=`echo $additional_conditions \| cut -d" " -f1`
695	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
696	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
697	if [[ -n $dummy ]]
698	then
699	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
700	locat=options; exit
701	fi
702	block=_$cond1
703	[[ -n $cond2 ]] && block=${block}_$cond2
704	fi
705
706
707	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
708	if [[ $run_coupled_model = true ]]
709	then
710
711	if [[ -n $coupled_dist ]]
712	then
713
714	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
715	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
716
717	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
718	then
719
720	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
721	printf "\n PEs (total) : $numprocs"
722	printf "\n PEs (atmosphere): $numprocs_atmos"
723	printf "\n PEs (ocean) : $numprocs_ocean"
724	locat=coupling; exit
725
726	fi
727
728	else
729
730	(( numprocs_ocean = $numprocs / 2 ))
731	(( numprocs_atmos = $numprocs / 2 ))
732
733	fi
734	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
735
736	# GET coupled_mode FROM THE CONFIG FILE
737	line=""
738	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
739	while read line
740	do
741	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && ( $(echo $line \| cut -d" " -s -f4) = $cond1 \|\| $(echo $line \| cut -d" " -s -f4) = $cond2 ) ]]
742	then
743	coupled_mode="mpi2"
744	fi
745	done < tmp_mrun
746
747	fi
748
749
750	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
751	# ARCHIVIERUNG FEHLGESCHLAGEN IST
752	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
753	then
754	if [[ $ignore_archive_error = false ]]
755	then
756	printf "\n +++ data archiving of previous run failed"
757	printf "\n see directory \~/job_queue on remote machine"
758	locat=archive; exit
759	else
760	printf "\n +++ warning: data archiving in a previous run failed"
761	printf "\n MRUN continues, trying to get backup copy"
762	fi
763	fi
764
765
766
767	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
768	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
769	if [[ "$read_from_config" = false ]]
770	then
771
772	[[ $silent = false ]] && printf "\n Reading the configuration file... "
773	while read zeile
774	do
775	[[ $silent = false ]] && printf "."
776
777
778	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
779	# ERSETZEN
780	eval zeile=\"$zeile\"
781
782
783	# INTERPRETATION DER ZEILE
784	if [[ "$(echo $zeile)" = "" ]]
785	then
786	# LEERZEILE, KEINE AKTION
787	continue
788
789	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
790	then
791
792	# ZEILE IST KOMMENTARZEILE
793	true
794
795	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
796	then
797
798	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
799	zeile=$(echo $zeile \| cut -c2-)
800	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
801	var=`echo $zeile \| cut -d" " -f1`
802	value=`echo $zeile \| cut -d" " -s -f2`
803	for_host=`echo $zeile \| cut -d" " -s -f3`
804	for_cond1=`echo $zeile \| cut -d" " -s -f4`
805	for_cond2=`echo $zeile \| cut -d" " -s -f5`
806
807	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
808	then
809
810	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
811	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
812	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
813
814
815	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
816	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
817	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
818	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
819	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
820	# KONFIGURATIONSDATEI
821	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
822	then
823	eval $var=\$value
824
825	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
826	if [[ $do_trace = true ]]
827	then
828	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
829	fi
830	fi
831
832	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
833	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
834	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
835	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
836	if [[ $var = host ]]
837	then
838	if [[ -n $host && "$host" != $localhost ]]
839	then
840	do_batch=true
841	do_remote=true
842	case $host in
843	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxt4\|lcxt5m\|lck\|lckordi) true;;
844	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
845	printf "\n is not available"
846	locat=nqs; exit;;
847	esac
848	else
849	host=$localhost
850	fi
851	fi
852
853	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
854	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
855	# DEN PROGRAMMEN BENOETIGT WERDEN
856	export $var
857	fi
858
859
860
861
862	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
863	then
864
865	# ZEILE DEFINIERT ERROR-KOMMANDO
866	(( iec = iec + 1 ))
867	zeile=$(echo $zeile \| cut -c4-)
868	err_command[$iec]="$zeile"
869
870	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
871	then
872
873	# ZEILE DEFINIERT INPUT-KOMMANDO
874	(( iic = iic + 1 ))
875	zeile=$(echo $zeile \| cut -c4-)
876	in_command[$iic]="$zeile"
877
878	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
879	then
880
881	# ZEILE DEFINIERT OUTPUT-KOMMANDO
882	(( ioc = ioc + 1 ))
883	zeile=$(echo $zeile \| cut -c4-)
884	out_command[$ioc]="$zeile"
885
886	else
887
888	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
889	# s2a: in/out - Feld
890	# s2b: loc - Feld (optional)
891	# s2c: tr/ar - Feld (optional)
892	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
893	s1=`echo $zeile \| cut -d" " -f1`
894	s2=`echo $zeile \| cut -d" " -s -f2`
895	s2a=$(echo $s2 \| cut -d":" -f1)
896	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
897	then
898	s2b=""
899	s2c=""
900	else
901	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
902	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
903	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
904	fi
905	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
906	s3=`echo $zeile \| cut -d" " -f3`
907	s4=`echo $zeile \| cut -d" " -s -f4`
908	s5=`echo $zeile \| cut -d" " -s -f5`
909	s6=`echo $zeile \| cut -d" " -s -f6`
910
911
912	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
913	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
914	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
915	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
916	# HANDEN SEIN MUSS (D.H. s2b = loc)
917	IFSALT="$IFS"; IFS="$IFS:"
918	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
919	then
920	found=false
921	for actual in $input_list
922	do
923	for formal in $s3
924	do
925	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
926	done
927	done
928	if [[ $found = true ]]
929	then
930	(( iin = iin + 1 ))
931	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
932	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
933	extin[$iin]=$s6
934	fi
935	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
936	then
937	found=false
938	for actual in $output_list
939	do
940	for formal in $s3
941	do
942	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
943	done
944	done
945	if [[ $found = true ]]
946	then
947	(( iout = iout + 1 ))
948	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
949	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
950	fi
951	elif [[ "$s2a" != in && "$s2a" != out ]]
952	then
953	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
954	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
955	locat=connect; exit
956	fi
957	IFS="$IFSALT"
958	fi
959	done < $config_file
960
961	else
962
963
964	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
965	[[ $silent = false ]] && printf "..."
966	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
967	export interpreted_config_file=.icf.$RANDOM
968
969
970
971	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
972	# VERFUEGUNG STELLEN
973	cat > .mrun_environment << %%END%%
974	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
975	config_file = '$config_file', do_remote = '$do_remote',
976	do_trace = '$do_trace', host = '$host',
977	input_list = '$input_list', icf = '$interpreted_config_file',
978	localhost = '$localhost', output_list = '$output_list' /
979
980	%%END%%
981
982	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
983	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
984	mrun_memory=$memory
985	mrun_group_number=$group_number
986	mrun_cpumax=$cpumax
987	mrun_numprocs=$numprocs
988
989	if [[ $localhost_realname = "sx-fep" ]]
990	then
991	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
992	else
993
994	if [[ "$host" != $localhost ]]
995	then
996
997	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
998	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
999	if [[ $? != 0 ]]
1000	then
1001	printf "\n\n +++ no interpret_config found"
1002	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
1003	locat=interpret_config; exit
1004	fi
1005	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
1006	$interpret_config_executable
1007
1008	else
1009
1010	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
1011	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
1012	then
1013	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
1014	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
1015	locat=interpret_config; exit
1016	else
1017	interpret_config${block}.x
1018	fi
1019
1020	fi
1021	fi
1022	rm .mrun_environment
1023
1024
1025	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
1026	chmod u+x $interpreted_config_file
1027	export PATH=$PATH:.
1028	. $interpreted_config_file
1029	rm $interpreted_config_file
1030
1031
1032	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
1033	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
1034	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
1035	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
1036	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
1037
1038	fi
1039
1040
1041	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
1042	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
1043	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
1044	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
1045	if [[ "$SOURCES_COMPLETE" = "" ]]
1046	then
1047
1048	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
1049	# VEREINBART WURDE
1050	source_path=""
1051	line=""
1052	grep "%source_path" $config_file > tmp_mrun
1053	while read line
1054	do
1055	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1056	then
1057	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
1058	then
1059	global_source_path=`echo $line \| cut -d" " -f2`
1060	fi
1061	fi
1062	done < tmp_mrun
1063
1064	line=""
1065	found=false
1066	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
1067	while read line
1068	do
1069	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1070	then
1071	if [[ $found = true ]]
1072	then
1073	printf "\n\n +++ more than one source path found in configuration file"
1074	printf "\n for local host \"$localhost\" "
1075	locat=source_path; exit
1076	fi
1077	source_path=`echo $line \| cut -d" " -f2`
1078	found=true
1079	fi
1080	done < tmp_mrun
1081	rm tmp_mrun
1082
1083	if [[ "$source_path" = "" ]]
1084	then
1085	if [[ "$global_source_path" != "" ]]
1086	then
1087	source_path=$global_source_path
1088	else
1089	printf "\n\n +++ no source path found in configuration file"
1090	printf "\n for local host \"$localhost\" "
1091	locat=source_path; exit
1092	fi
1093	fi
1094	eval source_path=$source_path
1095
1096	if [[ ! -d $source_path ]]
1097	then
1098	printf "\n\n +++ source path \"$source_path\" on local host"
1099	printf "\n \"$localhost\" does not exist"
1100	locat=source_path; exit
1101	fi
1102
1103	fi
1104
1105
1106	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
1107	# DURCH OPTION -G MITGETEILT)
1108	if [[ "$global_revision" = "" && $host != "ibmkisti" ]]
1109	then
1110	global_revision=`svnversion $source_path 2>/dev/null`
1111	global_revision="Rev: $global_revision"
1112	fi
1113
1114
1115	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
1116	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
1117	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
1118	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
1119	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
1120	if [[ -n $host && "$host" != $localhost ]]
1121	then
1122	do_batch=true
1123	do_remote=true
1124	case $host in
1125	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxt4\|lcxt5m\|lck\|lckordi) true;;
1126	(*) printf "\n"
1127	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
1128	printf "\n is not available"
1129	locat=nqs; (( iec = 0 )); exit;;
1130	esac
1131	else
1132	host=$localhost
1133	fi
1134
1135
1136	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
1137	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1138	then
1139
1140	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
1141	if [[ ! -n $numprocs ]]
1142	then
1143	printf "\n"
1144	printf "\n +++ option \"-K parallel\" requires additional specification"
1145	printf "\n of the number of processors to be used by"
1146	printf "\n mrun-option \"-X\" or by environment-variable"
1147	printf "\n \"numprocs\" in the configuration file"
1148	locat=numprocs; (( iec = 0 )); exit
1149	fi
1150
1151	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
1152	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
1153	# GESAMTPROZESSORANZAHL IST
1154	if [[ $host = nech \|\| $host = necriam \|\| $host = ibmh \|\| $host = ibmkisti \|\| $host = ibms ]]
1155	then
1156	[[ "$tasks_per_node" = "" ]] && tasks_per_node=6
1157	(( ival = $tasks_per_node ))
1158	(( pes = numprocs ))
1159	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1160	# then
1161	# (( pes = pes - 1 ))
1162	# fi
1163	(( ii = pes / ival ))
1164	if (( pes - ii * ival > 0 ))
1165	then
1166	printf "\n"
1167	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1168	printf "\n divisor of the total number of processors (option \"-X\")"
1169	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1170	locat=tasks_per_node; (( iec = 0 )); exit
1171	fi
1172	fi
1173
1174	# IBMY HAT NUR EINEN KNOTEN
1175	if [[ $host = ibmy ]]
1176	then
1177	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1178	then
1179	printf "\n"
1180	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1181	printf "\n total number of processors (option \"-X\")"
1182	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1183	locat=tasks_per_node; (( iec = 0 )); exit
1184	fi
1185	fi
1186
1187	# FALLS OPENMP PARALLELISIERUNG VERWENDET WERDEN SOLL, ANZAHL VON THREADS
1188	# SETZEN UND ZAHL DER TASKS PRO KNOTEN AUF 1 SETZEN
1189	# if [[ $use_openmp = true ]]
1190	# then
1191	# threads_per_task=$tasks_per_node
1192	# tasks_per_node=1
1193	# fi
1194
1195	# SETTINGS FOR SUBJOB-COMMAND
1196	TOPT="-T $tasks_per_node"
1197	OOPT="-O $threads_per_task"
1198
1199	# GESAMTZAHL DER KNOTEN BESTIMMEN
1200	if [[ "$tasks_per_node" != "" ]]
1201	then
1202	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1203	fi
1204
1205	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1206	# SETZEN
1207	if [[ $node_usage = default ]]
1208	then
1209	if [[ $host = ibms ]]
1210	then
1211	node_usage=shared
1212	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1213	then
1214	node_usage=singlejob
1215	else
1216	node_usage=not_shared
1217	fi
1218	fi
1219
1220	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
1221	then
1222	printf "\n"
1223	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1224	printf "\n \"shared\" or \"not_shared\""
1225	locat=tasks_per_node; (( iec = 0 )); exit
1226	fi
1227
1228	fi
1229
1230	# PRUEFEN, OB HOSTFILE EXISTIERT
1231	if [[ -n $hostfile ]]
1232	then
1233	if [[ ! -f $hostfile ]]
1234	then
1235	printf "\n"
1236	printf "\n +++ hostfile \"$hostfile\" does not exist"
1237	locat=hostfile; exit
1238	fi
1239	fi
1240
1241	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1242	if [[ $host = ibmy && $do_remote = false ]]
1243	then
1244	if [[ ! -f $HOME/.rhosts ]]
1245	then
1246	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1247	printf "\n\n *** file:"
1248	printf "\n $HOME/.rhosts"
1249	printf "\n was created\n"
1250	fi
1251	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1252	then
1253	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1254	printf "\n\n *** file:"
1255	printf "\n $HOME/.rhosts"
1256	printf "\n was extended by the name of the current host\n"
1257	fi
1258	fi
1259
1260
1261
1262	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1263	if [[ $queue = none ]]
1264	then
1265	case $host in
1266	(ibmh) queue=no_class;;
1267	(ibmkisti) queue=class.32plus;;
1268	(ibmy) queue=parallel;;
1269	(lckyoto) queue=ph;;
1270	(lcsgib) queue=bigq;;
1271	(lcsgih) queue=bigq;;
1272	(lctit) queue=S;;
1273	(nech) queue=none;;
1274	(necriam) queue=SP;;
1275	(unics) queue=unics;;
1276	esac
1277	fi
1278
1279
1280	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1281	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1282	# ERMITTELN
1283	(( i = 0 ))
1284	while (( i < iin ))
1285	do
1286	(( i = i + 1 ))
1287	(( maxcycle = 0 ))
1288
1289	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1290	if [[ "${actionin[$i]}" = di ]]
1291	then
1292	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1293	# REM-MASCHINE AUSWERTEN
1294	eval filename=${pathin[$i]}/${endin[$i]}
1295	else
1296	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1297	# REM-MASCHINE AUSWERTEN
1298	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1299	fi
1300
1301	# PRUEFEN AUF VORHANDENSEIN
1302	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1303	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1304	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1305	then
1306	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1307	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1308	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1309	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1310	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1311	if [[ "${transin[$i]}" != "locopt" ]]
1312	then
1313	printf "\n\n +++ INPUT-file: "
1314	if [[ "${extin[$i]}" = "" ]]
1315	then
1316	printf "\n $filename"
1317	else
1318	printf "\n $filename.${extin[$i]}"
1319	fi
1320	printf "\n does not exist\n"
1321	locat=input; exit
1322	else
1323	transin[$i]="unavailable"
1324	fi
1325	else
1326
1327	# ZYKLUSNUMMER FESTSTELLEN
1328	ls -1 -d $filename > filelist 2>/dev/null
1329	ls -1 -d $filename.* >> filelist 2>/dev/null
1330	while read zeile
1331	do
1332	cycle=$(print $zeile \| cut -f2 -d".")
1333	if [[ "$cycle" = "$zeile" ]]
1334	then
1335	(( icycle = 0 ))
1336	elif [[ "$cycle" = "${extin[$i]}" ]]
1337	then
1338	(( icycle = 0 ))
1339	else
1340	(( icycle = $cycle ))
1341	fi
1342	if (( icycle > maxcycle ))
1343	then
1344	(( maxcycle = icycle ))
1345	file_to_be_used=$zeile
1346	fi
1347	done <filelist
1348	rm filelist
1349
1350	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1351	if (( maxcycle > 0 ))
1352	then
1353	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1354	then
1355	filename=${filename}.$maxcycle.${extin[$i]}
1356	else
1357	filename=${filename}.$maxcycle
1358	fi
1359	else
1360	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1361	then
1362	filename=${filename}.${extin[$i]}
1363	fi
1364	fi
1365
1366	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1367	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1368	absnamein[$i]=$filename
1369	if (( maxcycle > 0 ))
1370	then
1371	if [[ "${actionin[$i]}" = di ]]
1372	then
1373	frelin[$i]=${endin[$i]}.$maxcycle
1374	else
1375	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1376	fi
1377	else
1378	if [[ "${actionin[$i]}" = di ]]
1379	then
1380	frelin[$i]=${endin[$i]}
1381	else
1382	frelin[$i]=${afname}${endin[$i]}
1383	fi
1384	fi
1385
1386	fi
1387	done
1388
1389
1390	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1391	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1392	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1393	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1394	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1395	(( i = 0 ))
1396	while (( i < iout ))
1397	do
1398	(( i = i + 1 ))
1399	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1400	then
1401	if [[ "${actionout[$i]}" = tr ]]
1402	then
1403	actionout[$i]=""
1404	elif [[ "${actionout[$i]}" = trpe ]]
1405	then
1406	actionout[$i]=pe
1407	elif [[ "${actionout[$i]}" = tra ]]
1408	then
1409	actionout[$i]=a
1410	fi
1411	(( maxcycle = 0 ))
1412	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1413	eval catalogname=${pathout[$i]}
1414	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1415	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1416	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1417	then
1418
1419	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1420	if cat /dev/null > $filename
1421	then
1422	rm $filename
1423	else
1424
1425	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1426	if [[ ! -d $catalogname ]]
1427	then
1428	if mkdir -p $catalogname
1429	then
1430	printf "\n\n *** directory:"
1431	printf "\n $catalogname"
1432	printf "\n was created\n"
1433	else
1434	printf "\n\n +++ OUTPUT-file:"
1435	printf "\n $filename"
1436	printf "\n cannot be created, because directory does not exist"
1437	printf "\n and cannot be created either"
1438	printf "\n"
1439	locat=output ; exit
1440	fi 2>/dev/null
1441	else
1442	printf "\n\n +++ OUTPUT-file:"
1443	printf "\n $filename"
1444	printf "\n cannot be created, although directory exists"
1445	printf "\n"
1446	locat=output ; exit
1447	fi
1448	fi 2>/dev/null
1449	else
1450
1451	# ZYKLUSNUMMER FESTSTELLEN
1452	ls -1 -d $filename > filelist 2>/dev/null
1453	ls -1 -d $filename.* >> filelist 2>/dev/null
1454	while read zeile
1455	do
1456	cycle=$(print $zeile \| cut -f2 -d".")
1457	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1458	then
1459	(( icycle = 1 ))
1460	else
1461	(( icycle = $cycle + 1 ))
1462	fi
1463	if (( icycle > maxcycle ))
1464	then
1465	(( maxcycle = icycle ))
1466	fi
1467	done <filelist
1468	rm filelist
1469	fi
1470
1471	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1472	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1473	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1474	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1475	if [[ "${actionout[$i]}" != a ]]
1476	then
1477	if (( maxcycle > 0 ))
1478	then
1479	filename=${filename}.$maxcycle
1480	if cat /dev/null > $filename
1481	then
1482	rm $filename
1483	else
1484	printf "\n +++ OUTPUT-file:"
1485	printf "\n $filename"
1486	printf "\n cannot be created"
1487	locat=output ; exit
1488	fi
1489	fi
1490	else
1491	(( maxcycle = maxcycle - 1 ))
1492	if (( maxcycle > 0 ))
1493	then
1494	filename=${filename}.$maxcycle
1495	fi
1496	fi
1497
1498	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1499	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1500	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1501	pathout[$i]=$filename
1502	if (( maxcycle > 0 ))
1503	then
1504	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1505	else
1506	frelout[$i]=${fname}${endout[$i]}
1507	fi
1508
1509	fi
1510	done
1511
1512
1513	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1514	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1515	then
1516	if [[ "$dvr_inc" = "" ]]
1517	then
1518	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1519	printf "\n This is required for the dvrp_graphics package.\n"
1520	locat=dvr; exit
1521	fi
1522	if [[ "$dvr_lib" = "" ]]
1523	then
1524	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1525	printf "\n This is required for the dvrp_graphics package.\n"
1526	locat=dvr; exit
1527	fi
1528	fi
1529
1530
1531	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1532	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1533	# UEBERSETZT ZU WERDEN)
1534	if [[ "$mainprog" = "" && "$executable" = "" ]]
1535	then
1536	printf "\n +++ neither main program nor executable defined"
1537	locat=source; exit
1538	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1539	then
1540	printf "\n +++ main program as well as executable defined"
1541	locat=source; exit
1542	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1543	then
1544	do_compile=false
1545	fi
1546
1547
1548	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1549	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1550	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1551	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1552	then
1553	rm -rf SOURCES_FOR_RUN_$fname
1554	mkdir SOURCES_FOR_RUN_$fname
1555	fi
1556
1557
1558	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1559	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1560	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1561	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1562	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1563	then
1564
1565	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1566	[[ "$source_list" = WP ]] && source_list=WRITE_PERMIT
1567
1568
1569	# EVTL. ZU UEBERSETZENDE PROGRAMMTEILE DADURCH BESTIMMEN, DASS GEPRUEFT
1570	# WIRD, WELCHE DATEIEN WRITE-PERMIT BESITZEN (DATEIEN SOLLTEN DESHALB
1571	# UNTER RCS-KONTROLLE STEHEN). MIT DER VARIABLEN EXCLUDE KOENNEN
1572	# BESTIMMTE DATEIEN GRUNDSAETZLICH VON DER UEBERSETZUNG AUSGESCHLOSSEN
1573	# WERDEN. DIES IST NUR BEI MANUELLEM START VON MRUN DURCH DEN BENUTZER
1574	# MOEGLICH, DA BEI AUTOMATISCHEN RESTARTS TEST DURCH DIE TATSAECHLICH
1575	# ZU UBERSETZENDEN DATEIEN ERSETZT IST.
1576	# ALLE ERMITTELTEN DATEIEN WERDEN IM VERZEICHNIS SOURCES_FOR_RUN_...
1577	# GESAMMELT
1578	if [[ "$source_list" = WRITE_PERMIT ]]
1579	then
1580
1581	source_list=""
1582	cd $source_path
1583
1584
1585	# ALLE MOEGLICHEN QUELLCODEDATEIEN AUFLISTEN
1586	Names=$(ls -1 *.f90 2>&1)
1587	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && Filenames="$Names"
1588	Names=$(ls -1 *.F90 2>&1)
1589	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && Filenames="$Filenames $Names"
1590	Names=$(ls -1 *.F 2>&1)
1591	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && Filenames="$Filenames $Names"
1592	Names=$(ls -1 *.f 2>&1)
1593	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && Filenames="$Filenames $Names"
1594	Names=$(ls -1 *.c 2>&1)
1595	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && Filenames="$Filenames $Names"
1596
1597
1598	# DATEIEN MIT WRITE-PERMIT NACH SOURCES_FOR_RUN_... KOPIEREN
1599	for dateiname in $Filenames
1600	do
1601	if [[ -w $dateiname ]]
1602	then
1603	if [[ "$exclude" = "" \|\| $(echo $exclude \| grep -c $dateiname) = 0 ]]
1604	then
1605	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1606	source_list=$source_list"$dateiname "
1607	fi
1608	fi
1609	done
1610
1611	cd - > /dev/null
1612
1613
1614	elif [[ "$source_list" = LOCALLY_MODIFIED ]]
1615	then
1616
1617	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1618	source_list=""
1619	cd $source_path
1620
1621
1622	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1623	if [[ ! -d .svn ]]
1624	then
1625	printf "\n\n +++ source directory"
1626	printf "\n \"$source_path\" "
1627	printf "\n is not under control of \"subversion\"."
1628	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1629	fi
1630
1631
1632	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1633	Filenames=""
1634	svn status > tmp_mrun
1635	while read line
1636	do
1637	firstc=`echo $line \| cut -c1`
1638	if [[ $firstc = M \|\| $firstc = "?" ]]
1639	then
1640	Name=`echo "$line" \| cut -c8-`
1641	extension=`echo $Name \| cut -d. -f2`
1642	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1643	then
1644	Filenames="$Filenames "$Name
1645	fi
1646	fi
1647	done < tmp_mrun
1648
1649
1650	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1651	for dateiname in $Filenames
1652	do
1653	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1654	source_list=$source_list"$dateiname "
1655	done
1656
1657	cd - > /dev/null
1658
1659
1660	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1661	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1662	# VORHANDEN
1663	elif [[ "$source_list" != "" && $restart_run != true ]]
1664	then
1665
1666	cd $source_path
1667
1668	for filename in $source_list
1669	do
1670
1671	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1672	if [[ $(print $filename \| grep -c "/") != 0 ]]
1673	then
1674	printf "\n +++ source code file: $filename"
1675	printf "\n must not contain (\"/\") "
1676	locat=source; exit
1677	fi
1678
1679	if [[ ! -f $filename ]]
1680	then
1681	printf "\n +++ source code file: $filename"
1682	printf "\n does not exist"
1683	locat=source; exit
1684	else
1685	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1686	fi
1687
1688	done
1689
1690	cd - > /dev/null
1691
1692	fi
1693
1694
1695	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1696	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1697	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1698	if [[ $restart_run != true ]]
1699	then
1700
1701	if [[ ! -f "$source_path/$mainprog" ]]
1702	then
1703	printf "\n\n +++ main program: $mainprog"
1704	printf "\n does not exist in source directory"
1705	printf "\n \"$source_path\"\n"
1706	locat=source; exit
1707	else
1708	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1709	then
1710	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1711	source_list=${mainprog}" $source_list"
1712	fi
1713	fi
1714	fi
1715
1716
1717	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1718	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1719	if [[ "$restart_run" != true ]]
1720	then
1721	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1722	if [[ ! -f $makefile ]]
1723	then
1724	printf "\n +++ file \"$makefile\" does not exist"
1725	locat=make; exit
1726	else
1727	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1728	fi
1729	fi
1730
1731
1732	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1733	if [[ $restart_run != true && "$add_source_path" != "" ]]
1734	then
1735
1736	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1737	if [[ ! -d $add_source_path ]]
1738	then
1739	printf "\n\n +++ WARNING: additional source code directory"
1740	printf "\n \"$add_source_path\" "
1741	printf "\n does not exist or is not a directory."
1742	printf "\n No source code will be used from this directory!\n"
1743	add_source_path=""
1744	sleep 3
1745	else
1746
1747	cd $add_source_path
1748	found=false
1749
1750	Names=$(ls -1 *.f90 2>&1)
1751	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1752	Names=$(ls -1 *.F90 2>&1)
1753	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1754	Names=$(ls -1 *.F 2>&1)
1755	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1756	Names=$(ls -1 *.f 2>&1)
1757	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1758	Names=$(ls -1 *.c 2>&1)
1759	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1760
1761	cd - > /dev/null
1762	cd SOURCES_FOR_RUN_$fname
1763
1764	# COPY MAKEFILE IF EXISTING
1765	if [[ -f $add_source_path/Makefile ]]
1766	then
1767	printf "\n\n *** user Makefile from directory"
1768	printf "\n \"$add_source_path\" is used \n"
1769	sleep 1
1770	cp $add_source_path/Makefile .
1771	fi
1772
1773	for dateiname in $AddFilenames
1774	do
1775	if [[ -f $dateiname ]]
1776	then
1777	printf "\n +++ source code file \"$dateiname\" found in additional"
1778	printf "\n source code directory \"$add_source_path\" "
1779	printf "\n but was also given with option \"-s\" which means that it should be taken"
1780	printf "\n from directory \"$source_path\"."
1781	locat=source; exit
1782	fi
1783
1784	cp $add_source_path/$dateiname .
1785	source_list="$source_list $dateiname"
1786
1787	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1788	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1789	then
1790	printf "\n\n +++ user file \"$dateiname\" "
1791	printf "\n is not listed in Makefile \n"
1792	locat=source; exit
1793	else
1794
1795	# Default User-Interface von der Liste entfernen, falls Datei
1796	# ein User-Interface enthaelt
1797	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1798	# then
1799	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1800	# then
1801	# rm -rf user_interface.f90
1802	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1803	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1804	# printf "\n since a user-interface is found in file"
1805	# printf "\n \"$add_source_path/$dateiname\" \n"
1806	# sleep 3
1807	# else
1808	if [[ $found = false ]]
1809	then
1810	found=true
1811	printf "\n\n *** following user file(s) added to the"
1812	printf " files to be translated:\n "
1813	fi
1814	printf "$dateiname "
1815	sleep 0.5
1816	fi
1817	done
1818	[[ $found = true ]] && printf "\n"
1819	cd - > /dev/null
1820	fi
1821	fi
1822
1823
1824	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1825	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1826	if [[ $restart_run != true && -n $package_list ]]
1827	then
1828
1829	cd $source_path
1830
1831	for package in $package_list
1832	do
1833
1834	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1835
1836	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1837	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1838	# LIEFERT
1839	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1840
1841
1842	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1843	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1844	for source_list_name in $package_source_list
1845	do
1846	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1847	then
1848
1849	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1850	ending=`echo $source_list_name \| cut -f2 -d.`
1851	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1852	then
1853	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1854	source_list="$source_list $source_list_name"
1855	fi
1856	fi
1857	done
1858	done
1859
1860	cd - > /dev/null
1861	fi
1862
1863
1864	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1865	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1866	# if [[ "$restart_run" != true ]]
1867	# then
1868	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1869	# if [[ ! -f $makefile ]]
1870	# then
1871	# printf "\n +++ file \"$makefile\" does not exist"
1872	# locat=make; exit
1873	# else
1874	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1875	# fi
1876	# fi
1877
1878	fi # do_compile=true
1879
1880
1881	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1882	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1883	if [[ $do_compile = true ]]
1884	then
1885
1886	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1887	# ZUSAMMENSETZEN
1888	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1889	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1890	then
1891	cpp_options="${cpp_options},-D__ibm=__ibm"
1892	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1893	then
1894	cpp_options="$cpp_options -D__nec"
1895	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1896	then
1897	cpp_options="$cpp_options -D__lc"
1898	else
1899	cpp_options="$cpp_options -D__$localhost"
1900	fi
1901
1902	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1903	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1904	then
1905	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1906	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1907	else
1908	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1909	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1910	fi
1911
1912	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1913	if [[ -n $package_list ]]
1914	then
1915	for package in $package_list
1916	do
1917	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1918	then
1919	if [[ $package != "dvrp_graphics+1PE" ]]
1920	then
1921	cpp_options="${cpp_options},-D__$package=__$package"
1922	else
1923	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1924	export use_seperate_pe_for_dvrp_output=true
1925	fi
1926	else
1927	if [[ $package != "dvrp_graphics+1PE" ]]
1928	then
1929	cpp_options="$cpp_options -D__$package"
1930	else
1931	cpp_options="$cpp_options -D__dvrp_graphics"
1932	export use_seperate_pe_for_dvrp_output=true
1933	fi
1934	fi
1935	done
1936	fi
1937
1938	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1939	if [[ -n $cpp_opts ]]
1940	then
1941	for popts in $cpp_opts
1942	do
1943	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1944	then
1945	cpp_options="${cpp_options},-D__$popts=__$popts"
1946	else
1947	cpp_options="$cpp_options -D__$popts"
1948	fi
1949	done
1950	fi
1951
1952	else
1953
1954
1955	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1956	if [[ $do_remote = false ]]
1957	then
1958	if [[ ! -f $executable ]]
1959	then
1960	printf "\n +++ executable file: $executable"
1961	printf "\n does not exist"
1962	locat=executable; exit
1963	fi
1964	fi
1965	fi
1966
1967
1968	# JOBMODUS FESTSTELLEN
1969	if [[ "$ENVIRONMENT" = BATCH ]]
1970	then
1971	jobmo=BATCH
1972	else
1973	jobmo=INTERACTIVE
1974	fi
1975
1976
1977	# no interactive runs on lctit
1978	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
1979	then
1980	printf "\n +++ no interactive runs allowed on host \"$host\" "
1981	printf "\n please submit batch job using mrun option \"-b\" \n"
1982	locat=normal; exit
1983	fi
1984
1985
1986	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1987	# DURCH BENUTZER ANDERWEITIG VEREINBART
1988	if [[ "$compiler_name" = "" ]]
1989	then
1990
1991	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
1992	locat=compiler_name; exit
1993
1994	fi
1995
1996
1997	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
1998	[[ $localhost = necriam ]] && compiler_name=mpif90
1999
2000
2001
2002	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
2003	kennung=$RANDOM
2004	if [[ "$tmp_user_catalog" = "" ]]
2005	then
2006	if [[ $localhost = ibmh ]]
2007	then
2008	tmp_user_catalog=$SCRATCH
2009	elif [[ $localhost = nech ]]
2010	then
2011	tmp_user_catalog=$WRKSHR
2012	else
2013	tmp_user_catalog=/tmp
2014	fi
2015	fi
2016	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
2017
2018
2019	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
2020	# BESTIMMEN
2021	if [[ "$tmp_data_catalog" = "" ]]
2022	then
2023	if [[ $localhost = nech ]]
2024	then
2025	tmp_data_catalog=$WRKSHR/mrun_restart_data
2026	else
2027	tmp_data_catalog=/tmp/mrun_restart_data
2028	fi
2029	fi
2030
2031
2032	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
2033	# ERSETZEN
2034	if [[ $do_remote = false && $do_compile = true ]]
2035	then
2036	eval fopts=\"$fopts\"
2037	eval lopts=\"$lopts\"
2038	fi
2039
2040
2041
2042	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
2043	fopts="$fopts $netcdf_inc $dvr_inc"
2044	lopts="$lopts $netcdf_lib $dvr_lib"
2045	ROPTS="$ropts"
2046	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxt4 \|\| $host = lcxt5m \|\| $host = lck \|\| $host = lckordi) && -n $numprocs ]]
2047	then
2048	XOPT="-X $numprocs"
2049	fi
2050
2051
2052
2053	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
2054	# GRAMM BENOETIGT
2055	done=false
2056	while [[ $done = false ]]
2057	do
2058	cputime=$cpumax
2059	if (( $cputime == 0 ))
2060	then
2061	if [[ $do_batch = true ]]
2062	then
2063	printf "\n +++ cpu-time is undefined"
2064	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
2065	printf "\n >>> "
2066	read cputime 1>/dev/null 2>&1
2067	else
2068	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
2069	fi
2070	else
2071	done=true
2072	fi
2073	cpumax=$cputime
2074	done
2075
2076	(( minuten = cputime / 60 ))
2077	(( sekunden = cputime - minuten * 60 ))
2078
2079
2080	# PRUEFEN DER KERNSPEICHERANFORDERUNG
2081	if [[ $do_batch = true ]]
2082	then
2083	done=false
2084	while [[ $done = false ]]
2085	do
2086	if (( memory == 0 ))
2087	then
2088	printf "\n +++ memory demand is undefined"
2089	printf "\n >>> Please type memory in MByte per process as INTEGER:"
2090	printf "\n >>> "
2091	read memory 1>/dev/null 2>&1
2092	else
2093	done=true
2094	fi
2095	done
2096	fi
2097
2098
2099	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
2100	if [[ $do_remote = true && -z $remote_username ]]
2101	then
2102	while [[ -z $remote_username ]]
2103	do
2104	printf "\n +++ username on remote host \"$host\" is undefined"
2105	printf "\n >>> Please type username:"
2106	printf "\n >>> "
2107	read remote_username
2108	done
2109	mc="$mc -u$remote_username"
2110	fi
2111
2112
2113	# set module load command and export for subjob
2114	if [[ "$modules" != "" ]]
2115	then
2116	if [[ $host = lctit ]]
2117	then
2118	export module_calls=". $modules"
2119	else
2120	export module_calls="module load ${modules};"
2121	fi
2122	fi
2123
2124	# bugfix for wrong netcdf module and for netCDF4 usage in case of mpt
2125	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2126	then
2127	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
2128	then
2129	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
2130	fi
2131	# if [[ $(echo $module_calls \| grep -c mpt) != 0 ]]
2132	# then
2133	# export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/sgi/mpt/2011-02-07/lib:\$LD_LIBRARY_PATH;"
2134	# echo "*** module_calls = $module_calls"
2135	# fi
2136	fi
2137
2138
2139	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
2140	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2141	then
2142	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
2143	then
2144	mpilib=mpt
2145	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
2146	then
2147	mpilib=mvapich
2148	fi
2149	fi
2150
2151
2152
2153	###########################################################################
2154	# HEADER-AUSGABE
2155	###########################################################################
2156
2157
2158	calltime=$(date)
2159	printf "\n"
2160	# [[ $silent = false ]] && clear
2161	printf "#--------------------------------------------------------------# \n"
2162	printf "\| $version$calltime \| \n"
2163	printf "\| \| \n"
2164	spalte1="called on:"; spalte2=$localhost_realname
2165	printf "\| $spalte1$spalte2 \| \n"
2166	if [[ $local_compile = false ]]
2167	then
2168	if [[ $do_remote = true ]]
2169	then
2170	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2171	else
2172	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2173	fi
2174	else
2175	spalte1="compiling test only!"; spalte2=""
2176	fi
2177	printf "\| $spalte1$spalte2 \| \n"
2178	if [[ -n $numprocs ]]
2179	then
2180	spalte1="number of PEs:"; spalte2=$numprocs
2181	printf "\| $spalte1$spalte2 \| \n"
2182	fi
2183	if [[ -n $tasks_per_node ]]
2184	then
2185	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2186	printf "\| $spalte1$spalte2 \| \n"
2187	fi
2188	if [[ $use_openmp = true ]]
2189	then
2190	spalte1="threads per task:"; spalte2="$threads_per_task"
2191	printf "\| $spalte1$spalte2 \| \n"
2192	fi
2193	printf "\| \| \n"
2194	if [[ $do_compile = true ]]
2195	then
2196	if [[ "$mopts" != "" ]]
2197	then
2198	spalte1="make options:"; spalte2=$mopts
2199	printf "\| $spalte1$spalte2 \| \n"
2200	zeile=$(echo "$mopts" \| cut -c41-)
2201	while [[ "$zeile" != "" ]]
2202	do
2203	spalte1=""
2204	spalte2=$zeile
2205	printf "\| $spalte1$spalte2 \| \n"
2206	zeile=$(echo "$zeile" \| cut -c41-)
2207	done
2208	fi
2209
2210	spalte1="cpp directives:"; spalte2=$cpp_options
2211	printf "\| $spalte1$spalte2 \| \n"
2212	zeile=$(echo "$cpp_options" \| cut -c41-)
2213	while [[ "$zeile" != "" ]]
2214	do
2215	spalte1=""
2216	spalte2=$zeile
2217	printf "\| $spalte1$spalte2 \| \n"
2218	zeile=$(echo "$zeile" \| cut -c41-)
2219	done
2220
2221	spalte1="compiler options:"; spalte2="$fopts"
2222	printf "\| $spalte1$spalte2 \| \n"
2223	zeile=$(echo "$fopts" \| cut -c41-)
2224	while [[ "$zeile" != "" ]]
2225	do
2226	spalte1=""
2227	spalte2=$zeile
2228	printf "\| $spalte1$spalte2 \| \n"
2229	zeile=$(echo "$zeile" \| cut -c41-)
2230	done
2231
2232	spalte1="linker options:"; spalte2=$lopts
2233	printf "\| $spalte1$spalte2 \| \n"
2234	zeile=$(echo "$lopts" \| cut -c41-)
2235	while [[ "$zeile" != "" ]]
2236	do
2237	spalte1=""
2238	spalte2=$zeile
2239	printf "\| $spalte1$spalte2 \| \n"
2240	zeile=$(echo "$zeile" \| cut -c41-)
2241	done
2242
2243	spalte1="modules to be load:"; spalte2=$modules
2244	printf "\| $spalte1$spalte2 \| \n"
2245	zeile=$(echo "$modules" \| cut -c41-)
2246	while [[ "$zeile" != "" ]]
2247	do
2248	spalte1=""
2249	spalte2=$zeile
2250	printf "\| $spalte1$spalte2 \| \n"
2251	zeile=$(echo "$zeile" \| cut -c41-)
2252	done
2253
2254	spalte1="main program":; spalte2=$mainprog
2255	printf "\| $spalte1$spalte2 \| \n"
2256	else
2257	spalte1=executable:; spalte2=$executable
2258	printf "\| $spalte1$spalte2 \| \n"
2259	fi
2260	printf "\| \| \n"
2261	spalte1="base name of files":; spalte2=$fname
2262	printf "\| $spalte1$spalte2 \| \n"
2263	if [[ $fname != $afname ]]
2264	then
2265	spalte1="base name of input files":; spalte2=$afname
2266	printf "\| $spalte1$spalte2 \| \n"
2267	fi
2268	spalte1="INPUT control list":; spalte2=$input_list
2269	printf "\| $spalte1$spalte2 \| \n"
2270	spalte1="OUTPUT control list":; spalte2=$output_list
2271	printf "\| $spalte1$spalte2 \| \n"
2272
2273	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2274	then
2275	spalte1="memory demand / PE":; spalte2="$memory MB"
2276	printf "\| $spalte1$spalte2 \| \n"
2277	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2278	printf "\| $spalte1$spalte2 \| \n"
2279	fi
2280
2281	if [[ $do_compile = true ]]
2282	then
2283	printf "\| \| \n"
2284	printf "\| Files to be compiled: \| \n"
2285	zeile=$source_list
2286	while [[ "$zeile" != "" ]]
2287	do
2288	spalte3=$zeile
2289	printf "\| $spalte3 \| \n"
2290	zeile=$(echo "$zeile" \| cut -c61-)
2291	done
2292	fi
2293	printf "#--------------------------------------------------------------#"
2294
2295
2296
2297	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2298	if [[ $do_trace = true ]]
2299	then
2300	(( i = 0 ))
2301	while (( i < iin ))
2302	do
2303	(( i = i + 1 ))
2304	if (( i == 1 ))
2305	then
2306	printf "\n\n >>> INPUT-file assignments:\n"
2307	fi
2308	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2309	done
2310	(( i = 0 ))
2311	while (( i < iout ))
2312	do
2313	(( i = i + 1 ))
2314	if (( i == 1 ))
2315	then
2316	printf "\n\n >>> OUTPUT-file assignments:\n"
2317	fi
2318	printf "\n ${localout[$i]} : ${pathout[$i]}"
2319	done
2320	(( i = 0 ))
2321	while (( i < iic ))
2322	do
2323	(( i = i + 1 ))
2324	if (( i == 1 ))
2325	then
2326	printf "\n\n >>> INPUT-commands:\n"
2327	fi
2328	printf "\n ${in_command[$i]}"
2329	done
2330	(( i = 0 ))
2331	while (( i < ioc ))
2332	do
2333	(( i = i + 1 ))
2334	if (( i == 1 ))
2335	then
2336	printf "\n\n >>> OUTPUT-commands:\n"
2337	fi
2338	printf "\n ${out_command[$i]}"
2339	done
2340	fi
2341
2342
2343	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2344	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2345	then
2346	antwort=dummy
2347	printf "\n\n"
2348	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2349	do
2350	printf " >>> everything o.k. (y/n) ? "
2351	read antwort
2352	done
2353	if [[ $antwort = n \|\| $antwort = N ]]
2354	then
2355	locat=user_abort; (( iec = 0 )); exit
2356	fi
2357	if [[ $do_batch = true ]]
2358	then
2359	printf " >>> batch-job will be created and submitted"
2360	else
2361	if [[ $local_compile = false ]]
2362	then
2363	printf " >>> MRUN will now continue to execute on this machine"
2364	else
2365	printf " >>> a test compilation will now be carried out on this machine"
2366	fi
2367	fi
2368	fi
2369
2370
2371
2372
2373	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2374	# CHENDE AKTIONEN DURCHGEFUEHRT
2375	if [[ $do_batch = false ]]
2376	then
2377
2378
2379	# TEMPORAEREN KATALOG ERZEUGEN
2380	mkdir -p $TEMPDIR
2381	chmod go+rx $TEMPDIR
2382	tmpcreate=true
2383
2384	# set striping on lustre file system
2385	# if [[ $localhost = lcsgih ]]
2386	# then
2387	# lfs setstripe -s 8192k -c 16 $TEMPDIR
2388	# lfs getstripe $TEMPDIR
2389	# fi
2390
2391
2392	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2393	# TEMPORAERES VERZEICHNIS KOPIEREN
2394	if [[ $do_compile = true ]]
2395	then
2396
2397	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2398	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2399	if [[ $localhost = nech ]]
2400	then
2401	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2402	if mkdir -p $TEMPDIR_COMPILE
2403	then
2404	printf "\n *** \"$TEMPDIR_COMPILE\" "
2405	printf "\n is generated as temporary directory for cross compiling\n"
2406	else
2407	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2408	printf "\n needed for cross compilation failed"
2409	locat=compile
2410	exit
2411	fi
2412	else
2413	TEMPDIR_COMPILE=$TEMPDIR
2414	fi
2415
2416
2417	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2418	line=""
2419	grep "%depository_path" $config_file > tmp_mrun
2420	while read line
2421	do
2422	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2423	then
2424	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2425	then
2426	global_depository_path=`echo $line \| cut -d" " -s -f2`
2427	fi
2428	fi
2429	done < tmp_mrun
2430
2431	line=""
2432	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2433	while read line
2434	do
2435	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2436	then
2437	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2438	then
2439	local_depository_path=`echo $line \| cut -d" " -s -f2`
2440	fi
2441	fi
2442	done < tmp_mrun
2443
2444	if [[ "$local_depository_path" = "" ]]
2445	then
2446	if [[ "$global_depository_path" != "" ]]
2447	then
2448	local_depository_path=$global_depository_path
2449	else
2450	printf "\n\n +++ no depository path found in configuration file"
2451	printf "\n for local host \"$localhost\" "
2452	printf "\n please set \"\%depository_path\" in configuration file\n"
2453	locat=config_file; exit
2454	fi
2455	fi
2456	eval local_depository_path=$local_depository_path
2457	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2458	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2459
2460
2461	basename=`print $mainprog \| cut -f1 -d"."`
2462	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2463	if [[ ! -f $make_depository ]]
2464	then
2465	printf "\n"
2466	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2467	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2468	else
2469	cp $make_depository $TEMPDIR_COMPILE
2470	cd $TEMPDIR_COMPILE
2471	tar -xf $make_depository > /dev/null 2>&1
2472	cd - > /dev/null
2473	fi
2474
2475	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2476
2477	else
2478
2479	cp $executable ${TEMPDIR}/a.out
2480
2481	fi
2482
2483
2484	# WECHSEL IN TEMPORAEREN KATALOG
2485	cd $TEMPDIR
2486	printf "\n *** changed to temporary directory: $TEMPDIR"
2487
2488
2489	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2490	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2491	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2492	# ERMITTELN
2493	(( i = 0 ))
2494	while (( i < iout ))
2495	do
2496	(( i = i + 1 ))
2497	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2498	then
2499	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2500	else
2501	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2502	fi
2503	done
2504
2505
2506	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2507	if [[ $do_compile = true ]]
2508	then
2509
2510
2511	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2512	printf "\n\n\n *** compilation starts \n$striche\n"
2513	printf " *** compilation with make using following options:\n"
2514	printf " make depository: $make_depository"
2515	if [[ "$mopts" != "" ]]
2516	then
2517	printf " make options: $mopts\n"
2518	fi
2519	printf " compilername: $compiler_name\n"
2520	printf " compiler options: $fopts\n"
2521	printf " preprocessor directives: $cpp_options \n"
2522	printf " linker options: $lopts \n"
2523	if [[ "$modules" != "" ]]
2524	then
2525	printf " modules to be load: $modules \n"
2526	fi
2527	printf " source code files: $source_list \n"
2528
2529	if [[ $localhost = nech ]]
2530	then
2531	ssh 136.172.44.192 -l $usern ". /SX/opt/etc/initsx.sh; $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2532	cp $TEMPDIR_COMPILE/a.out .
2533	[[ $? != 0 ]] && compile_error=true
2534	rm -rf $TEMPDIR_COMPILE
2535	elif [[ $localhost = ibmh ]]
2536	then
2537	printf " compiler is called via ssh on \"plogin1\" \n"
2538	ssh plogin1 -l $usern "export PATH=/sw/ibm/xlf/12.1.0.3/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2539	[[ ! -f a.out ]] && compile_error=true
2540	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2541	elif [[ $localhost = lcsgib ]]
2542	then
2543	printf " compiler is called via ssh on \"bicegate0\" \n"
2544	ssh bicegate0 -l $usern ". /usr/share/modules/init/bash; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2545	[[ ! -f a.out ]] && compile_error=true
2546	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2547	elif [[ $localhost = lcsgih ]]
2548	then
2549	printf " compiler is called via ssh on \"hicegate1\" \n"
2550	ssh hicegate1 -l $usern ". /usr/share/modules/init/bash; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2551	[[ ! -f a.out ]] && compile_error=true
2552	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2553	else
2554	[[ $localhost = lcxt4 ]] && . /opt/modules/default/init/ksh
2555	[[ "$module_calls" != "" ]] && eval $module_calls
2556	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2557	fi
2558
2559	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2560	then
2561	printf "\n +++ error occured while compiling or linking"
2562	locat=compile
2563
2564	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
2565	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
2566	# then
2567	exit
2568	# else
2569	# locat=normal
2570	# fi
2571	else
2572	printf "$striche\n *** compilation finished \n"
2573	fi
2574	fi
2575
2576
2577	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2578	if [[ $local_compile = true ]]
2579	then
2580	cd $HOME
2581	rm -rf $TEMPDIR
2582	locat=local_compile; exit
2583	fi
2584
2585
2586	# BEREITSTELLEN DER INPUT-DATEIEN
2587	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2588	(( i = 0 ))
2589	while (( i < iin ))
2590	do
2591	(( i = i + 1 ))
2592	if (( i == 1 ))
2593	then
2594	printf "\n\n *** providing INPUT-files:\n$striche"
2595	fi
2596
2597
2598	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2599	if [[ "${transin[$i]}" = unavailable ]]
2600	then
2601	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2602	then
2603	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2604	printf "\n is not available!"
2605	else
2606	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2607	printf "\n is not available!"
2608	fi
2609	continue
2610	fi
2611
2612	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2613	files_for_pes=false; datentyp=file
2614	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2615	then
2616	files_for_pes=true; datentyp=directory
2617	actionin[$i]=""
2618	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2619	then
2620	actionin[$i]=""
2621	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2622	then
2623	files_for_pes=true; datentyp=directory
2624	actionin[$i]="ar"
2625	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2626	then
2627	actionin[$i]="ar"
2628	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2629	then
2630	files_for_pes=true; datentyp=directory
2631	actionin[$i]="fl"
2632	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2633	then
2634	actionin[$i]="fl"
2635	fi
2636
2637	if [[ $files_for_pes = true ]]
2638	then
2639	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
2640	else
2641	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
2642	fi
2643
2644	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
2645	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
2646	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
2647	# SERVER ZU HOLEN
2648	if [[ "${actionin[$i]}" = fl ]]
2649	then
2650	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
2651	if [[ $files_for_pes = false ]]
2652	then
2653	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
2654	then
2655	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
2656	got_tmp[$i]=true
2657	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2658	then
2659	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2660	printf "\n *** trying to use backup copy in \"$WORK\" "
2661	cp $WORK/${frelin[$i]} ${localin[$i]}
2662	else
2663	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2664	printf "\n or \"$tmp_data_catalog\" does not exist!"
2665	printf "\n *** trying to get copy from archive"
2666	actionin[$i]=ar
2667	fi
2668	else
2669	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
2670	then
2671	mkdir ${localin[$i]}
2672	cd $tmp_data_catalog/${frelin[$i]}
2673	for file in $(ls *)
2674	do
2675	ln $file $TEMPDIR/${localin[$i]}
2676	done
2677	cd $TEMPDIR
2678	got_tmp[$i]=true
2679	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2680	then
2681	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2682	printf "\n *** trying to use backup copy in \"$WORK\" "
2683	cp -r $WORK/${frelin[$i]} ${localin[$i]}
2684	else
2685	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2686	printf "\n or \"$tmp_data_catalog\" does not exist!"
2687	printf "\n *** trying to get copy from archive"
2688	actionin[$i]=ar
2689	fi
2690	fi
2691	fi
2692
2693
2694	# DATEI LIEGT AUF ARCHIV-SERVER
2695	if [[ "${actionin[$i]}" = ar ]]
2696	then
2697
2698	if [[ $files_for_pes = false ]]
2699	then
2700	printf "\n file will be restored from archive-system ($archive_system)!"
2701	else
2702	printf "\n directory will be restored from archive-system ($archive_system)!"
2703	fi
2704
2705	file_restored=false
2706
2707	if [[ $archive_system = asterix ]]
2708	then
2709	do_stagein=true
2710	(( stagein_anz = 0 ))
2711	while [[ $do_stagein = true ]]
2712	do
2713	if [[ $files_for_pes = false ]]
2714	then
2715	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
2716	else
2717	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
2718	fi
2719	cat STAGEIN_OUTPUT
2720	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
2721	then
2722	file_restored=true
2723	do_stagein=false
2724	else
2725	(( stagein_anz = stagein_anz + 1 ))
2726	if (( stagein_anz == 10 ))
2727	then
2728	printf "\n +++ stagein stoped after 10 tries"
2729	locat=stage
2730	exit
2731	fi
2732	printf "\n +++ restoring from archive failed, trying again:"
2733	sleep 900
2734	fi
2735	done
2736	elif [[ $archive_system = DMF ]]
2737	then
2738	if [[ $files_for_pes = false ]]
2739	then
2740	printf "\n +++ restoring of single files impossible with $archive_system !\n"
2741	locat=DMF
2742	exit
2743	else
2744	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
2745	cp -r $ARCHIVE/${frelin[$i]} $PWD
2746	file_restored=true
2747	fi
2748	elif [[ $archive_system = tivoli ]]
2749	then
2750	if [[ $files_for_pes = false ]]
2751	then
2752	if [[ $localhost = lcsgih ]]
2753	then
2754	ssh $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2755	else
2756	ssh $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2757	fi
2758	else
2759	(( inode = 0 ))
2760	while (( inode < nodes ))
2761	do
2762	if [[ $localhost = lcsgih ]]
2763	then
2764	ssh $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2765	else
2766	ssh $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2767	fi
2768	(( inode = inode + 1 ))
2769	done
2770	fi
2771	file_restored=true
2772	elif [[ $archive_system = ut ]]
2773	then
2774	if [[ $files_for_pes = false ]]
2775	then
2776	cp $UT/${frelin[$i]} .
2777	else
2778	(( inode = 0 ))
2779	while (( inode < nodes ))
2780	do
2781	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
2782	(( inode = inode + 1 ))
2783	done
2784	fi
2785	file_restored=true
2786	else
2787	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
2788	locat=rearchive
2789	exit
2790	fi
2791
2792	if [[ $file_restored = true ]]
2793	then
2794
2795	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
2796	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
2797	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
2798	if [[ $files_for_pes = false ]]
2799	then
2800	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
2801	else
2802	mkdir $tmp_data_catalog/${frelin[$i]}
2803	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
2804	fi
2805	got_tmp[$i]=true
2806
2807	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
2808	mv ${frelin[$i]} ${localin[$i]}
2809
2810	fi
2811	fi
2812
2813
2814	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
2815	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
2816	then
2817
2818	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
2819	then
2820
2821	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
2822	printf "\n file will be provided for $numprocs processors"
2823	mkdir ${localin[$i]}
2824	ival=$numprocs
2825	(( ii = 0 ))
2826	while (( ii <= ival-1 ))
2827	do
2828	if (( ii < 10 ))
2829	then
2830	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
2831	elif (( ii < 100 ))
2832	then
2833	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
2834	elif (( ii < 1000 ))
2835	then
2836	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
2837	else
2838	cp ${absnamein[$i]} ${localin[$i]}/_$ii
2839	fi
2840	(( ii = ii + 1 ))
2841	done
2842
2843	else
2844
2845	if [[ $files_for_pes = true ]]
2846	then
2847
2848	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
2849	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
2850	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
2851	# PER MOVE UMBENANNT WERDEN
2852	printf "\n providing $numprocs files for the respective processors"
2853	mkdir ${localin[$i]}
2854	if [[ $link_local_input = true ]]
2855	then
2856	printf " using ln -f\n"
2857	cd ${absnamein[$i]}
2858	for file in $(ls *)
2859	do
2860	ln -f $file ${localin[$i]}
2861	done
2862	cd $TEMPDIR
2863	fi
2864	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
2865	if [[ ! -f "${localin[$i]}/_0000" ]]
2866	then
2867	if [[ $link_local_input = true ]]
2868	then
2869	printf " ln failed for .../_0000, using cp...\n"
2870	fi
2871	cp -r ${absnamein[$i]}/* ${localin[$i]}
2872	fi
2873
2874	else
2875	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
2876	if [[ $link_local_input = true ]]
2877	then
2878	printf " using ln -f\n"
2879	ln -f ${absnamein[$i]} ${localin[$i]}
2880	fi
2881	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
2882	if [[ ! -f "${localin[$i]}" ]]
2883	then
2884	if [[ $link_local_input = true ]]
2885	then
2886	printf " ln failed, using cp...\n"
2887	fi
2888	cp ${absnamein[$i]} ${localin[$i]}
2889	fi
2890	fi
2891	fi
2892	fi
2893
2894	done
2895	if (( i != 0 ))
2896	then
2897	printf "\n$striche\n *** all INPUT-files provided \n"
2898	fi
2899
2900
2901	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
2902	(( i = 0 ))
2903	while (( i < iic ))
2904	do
2905	(( i = i + 1 ))
2906	if (( i == 1 ))
2907	then
2908	printf "\n\n *** execution of INPUT-commands:\n$striche"
2909	fi
2910	printf "\n >>> ${in_command[$i]}"
2911	eval ${in_command[$i]}
2912	if (( i == iic ))
2913	then
2914	printf "\n$striche\n"
2915	fi
2916	done
2917
2918
2919	# VERBLEIBENDE CPU-ZEIT BERECHNEN
2920	cpurest=${cpumax}.
2921
2922
2923	# START DVR STREAMING SERVER
2924	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
2925	then
2926	if [[ "$dvr_server" != "" ]]
2927	then
2928
2929	printf "\n\n *** preparing the dvr streaming server configuration file"
2930
2931	# Check, if a dvr server is already running
2932	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
2933	if [[ "$running_dvrserver_id" != "" ]]
2934	then
2935
2936	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
2937	printf "\n This server is used instead starting a new one!"
2938	printf "\n If required, script \"process_dvr_output\" has to be run manually."
2939
2940	else
2941
2942	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
2943	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
2944	then
2945	cp ${PALM_BIN}/.dvrserver.config .
2946
2947	# Entering the BASEDIR, UID and GID into this file
2948	user_id=`id -u`
2949	group_id=`id -g`
2950	# & is needed as seperator, because TEMPDIR contains /
2951	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
2952	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
2953	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
2954	mv .dvrserver.3 .dvrserver.config
2955	rm .dvrserver.1 .dvrserver.2
2956
2957	# Start dvr server in background, get his id and print on terminal
2958	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
2959	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
2960	printf "\n *** streaming server with id=$dvrserver_id is started in background"
2961	local_dvrserver_running=.TRUE.
2962	else
2963	printf "\n +++ missing file \".dvrserver.config\" in directory:"
2964	printf "\n \"$PALM_BIN\" "
2965	locat=dvr
2966	exit
2967	fi
2968
2969	fi
2970
2971	else
2972	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
2973	fi
2974	fi
2975
2976
2977	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
2978	# LESEN VON PALM)
2979	cat > ENVPAR << %%END%%
2980	&envpar run_identifier = '$fname', host = '$localhost',
2981	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2982	maximum_cpu_time_allowed = ${cpumax}.,
2983	revision = '$global_revision',
2984	local_dvrserver_running = $local_dvrserver_running /
2985
2986	%%END%%
2987
2988
2989	# PROGRAMMSTART
2990	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
2991	PATH=$PATH:$TEMPDIR
2992
2993	# MPI debug option (argument checking, slows down execution due to increased latency)
2994	if [[ "$mpi_debug" = true ]]
2995	then
2996	export MPI_CHECK_ARGS=1
2997	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
2998	fi
2999
3000	if [[ "$totalview" = true ]]
3001	then
3002	printf "\n *** totalview debugger will be used"
3003	tv_opt="-tv"
3004	else
3005	tv_opt=""
3006	fi
3007
3008	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
3009	then
3010	if [[ "$ENVIRONMENT" = BATCH ]]
3011	then
3012	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
3013	then
3014	printf "\n +++ debug is allowed in interactive mode only"
3015	locat=debug
3016	exit
3017	fi
3018	fi
3019	if [[ $localhost = decalpha ]]
3020	then
3021	dxladebug a.out
3022	elif [[ $localhost = ibmh ]]
3023	then
3024
3025	# SETUP THE IBM MPI ENVIRONMENT
3026	export MP_SHARED_MEMORY=yes
3027	export AIXTHREADS_SCOPE=S
3028	export OMP_NUM_THREADS=$threads_per_task
3029	export AUTHSTATE=files
3030	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3031
3032	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
3033	export MP_ADAPTER_USE=shared
3034	export MP_CPU_USE=multiple
3035	export MP_TIMEOUT=1200
3036
3037	unset MP_TASK_AFFINITY
3038
3039	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
3040	#(( ii = 1 ))
3041	#while (( ii <= $numprocs ))
3042	#do
3043	# echo $localhost_realname >> hostfile
3044	# (( ii = ii + 1 ))
3045	#done
3046	#export MP_HOSTFILE=hostfile
3047
3048	if [[ "$LOADLBATCH" = yes ]]
3049	then
3050	totalview poe a.out $ROPTS
3051	else
3052	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3053	export TVDSVRLAUNCHCMD=ssh
3054	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3055	fi
3056	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
3057	then
3058	# CURRENTLY NO DEBUGGER ON LCSGI
3059	if [[ $run_coupled_model = true ]]
3060	then
3061	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
3062	locat=debug
3063	exit
3064	else
3065	echo "no_coupling" > runfile_atmos
3066	fi
3067	(( ii = $numprocs / $threads_per_task ))
3068	export OMP_NUM_THREADS=$threads_per_task
3069	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3070	if [[ $threads_per_task != 1 ]]
3071	then
3072	printf "\n threads per task: $threads_per_task"
3073	fi
3074	printf "\n\n"
3075	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3076	then
3077	# export MPI_LAUNCH_TIMEOUT=360
3078	if [[ "$totalview" = true ]]
3079	then
3080	printf "\n running totalview debugger"
3081	mpiexec_mpt $tv_opt -n $ii ./a.out $ROPTS < runfile_atmos
3082	else
3083	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3084	fi
3085	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3086	then
3087	# ulimit -s 300000 # A too large stack size causes problems
3088	# export MV2_NUM_PORTS=2
3089	# export MV2_CPU_MAPPING=0:1:2:3
3090	if [[ "$totalview" = true ]]
3091	then
3092	printf "\n running totalview debugger"
3093	mpiexec $tv_opt ./a.out $ROPTS < runfile_atmos
3094	else
3095	mpiexec ./a.out $ROPTS < runfile_atmos
3096	fi
3097	fi
3098	else
3099	printf "\n +++ no debug available on \"$localhost\" "
3100	printf "\n or not implemented in mrun so far"
3101	locat=debug
3102	exit
3103	fi
3104
3105	# end debug mode
3106	else
3107
3108	# normal execution
3109	if [[ -n $numprocs ]]
3110	then
3111	# RUNNING THE PROGRAM ON PARALLEL MACHINES
3112	if [[ $(echo $host \| cut -c1-3) = ibm ]]
3113	then
3114	# SETUP THE IBM MPI ENVIRONMENT
3115	if [[ $host != ibmh && $host != ibmkisti ]]
3116	then
3117	export MP_SHARED_MEMORY=yes
3118	export AIXTHREAD_SCOPE=S
3119	export OMP_NUM_THREADS=$threads_per_task
3120	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
3121	export AUTHSTATE=files
3122	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3123	# export MP_PRINTENV=yes
3124
3125	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3126	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3127	export MP_WAIT_MODE=poll
3128	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3129	fi
3130
3131	if [[ $host = ibmkisti ]]
3132	then
3133	export LANG=en_US
3134	export MP_SHARED_MEMORY=yes
3135	if [[ $threads_per_task = 1 ]]
3136	then
3137	export MP_SINGLE_THREAD=yes
3138	export MEMORY_AFFINITY=MCM
3139	else
3140	export OMP_NUM_THREADS=$threads_per_task
3141	fi
3142	fi
3143
3144	if [[ "$LOADLBATCH" = yes ]]
3145	then
3146	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3147	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3148	then
3149	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3150	else
3151	if [[ $run_coupled_model = false ]]
3152	then
3153	if [[ "$ocean_file_appendix" = true ]]
3154	then
3155	echo "precursor_ocean" > runfile_atmos
3156	else
3157	echo "precursor_atmos" > runfile_atmos
3158	fi
3159	else
3160	(( iia = $numprocs_atmos / $threads_per_task ))
3161	(( iio = $numprocs_ocean / $threads_per_task ))
3162	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3163	printf "\n using $coupled_mode coupling"
3164	printf "\n\n"
3165	echo "coupled_run $iia $iio" > runfile_atmos
3166	fi
3167	poe ./a.out $ROPTS < runfile_atmos
3168	fi
3169	else
3170	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
3171	then
3172	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3173	elif [[ $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibmy ]]
3174	then
3175	if [[ -f $hostfile ]]
3176	then
3177	cp $hostfile hostfile
3178	else
3179	(( ii = 1 ))
3180	while (( ii <= $numprocs ))
3181	do
3182	echo $localhost_realname >> hostfile
3183	(( ii = ii + 1 ))
3184	done
3185	fi
3186	export MP_HOSTFILE=hostfile
3187	if [[ $run_coupled_model = false ]]
3188	then
3189	if [[ "$ocean_file_appendix" = true ]]
3190	then
3191	echo "precursor_ocean" > runfile_atmos
3192	else
3193	echo "precursor_atmos" > runfile_atmos
3194	fi
3195	else
3196	(( iia = $numprocs_atmos / $threads_per_task ))
3197	(( iio = $numprocs_ocean / $threads_per_task ))
3198	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3199	printf "\n using $coupled_mode coupling"
3200	printf "\n\n"
3201	echo "coupled_run $iia $iio" > runfile_atmos
3202	fi
3203	if [[ $localhost = ibmy ]]
3204	then
3205	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3206	else
3207	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
3208	fi
3209
3210	else
3211	if [[ "$host_file" = "" ]]
3212	then
3213	printf "\n +++ no hostfile given in configuration file"
3214	locat=config_file
3215	exit
3216	else
3217	eval host_file=$host_file
3218	fi
3219	export MP_HOSTFILE=$host_file
3220	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3221	fi
3222	fi
3223	elif [[ $host = nech \|\| $host = necriam ]]
3224	then
3225	(( ii = nodes ))
3226	if [[ $ii = 1 ]]
3227	then
3228	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3229	export MPIPROGINF=YES
3230	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3231	echo "*** execution on single node with mpirun"
3232	mpirun -np $numprocs ./a.out $ROPTS
3233	else
3234	(( i = 0 ))
3235	while (( i < ii ))
3236	do
3237	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3238	(( i = i + 1 ))
3239	done
3240
3241	echo "#!/bin/sh" > mpi_exec_shell
3242	echo " " >> mpi_exec_shell
3243	echo "set -u" >> mpi_exec_shell
3244	echo "F_ERRCNT=0" >> mpi_exec_shell
3245	echo "MPIPROGINV=YES" >> mpi_exec_shell
3246	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3247	echo "cpurest=$cpurest" >> mpi_exec_shell
3248	echo "fname=$fname" >> mpi_exec_shell
3249	echo "localhost=$localhost" >> mpi_exec_shell
3250	echo "return_addres=$return_addres" >> mpi_exec_shell
3251	echo "return_username=$return_username" >> mpi_exec_shell
3252	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3253	echo "write_binary=$write_binary" >> mpi_exec_shell
3254	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3255	echo " " >> mpi_exec_shell
3256	echo "export F_ERRCNT" >> mpi_exec_shell
3257	echo "export MPIPROGINV" >> mpi_exec_shell
3258	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3259	echo "export cpurest" >> mpi_exec_shell
3260	echo "export fname" >> mpi_exec_shell
3261	echo "export localhost" >> mpi_exec_shell
3262	echo "export return_addres" >> mpi_exec_shell
3263	echo "export return_username" >> mpi_exec_shell
3264	echo "export tasks_per_node" >> mpi_exec_shell
3265	echo "export write_binary" >> mpi_exec_shell
3266	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3267	echo " " >> mpi_exec_shell
3268	echo "exec ./a.out" >> mpi_exec_shell
3269
3270	chmod u+x mpi_exec_shell
3271	export MPIPROGINF=YES
3272	mpirun -f multinode_config &
3273	wait
3274
3275	fi
3276	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
3277	then
3278
3279	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3280	# DOES NOT EXIST
3281	if [[ $host != lcsgih && $host != lcsgib ]]
3282	then
3283	if [[ -f $hostfile ]]
3284	then
3285	cp $hostfile hostfile
3286	else
3287	(( ii = 1 ))
3288	while (( ii <= $numprocs / $threads_per_task ))
3289	do
3290	echo $localhost_realname >> hostfile
3291	(( ii = ii + 1 ))
3292	done
3293	fi
3294	eval zeile=\"`head -n $ii hostfile`\"
3295	printf "\n *** running on: $zeile"
3296	fi
3297
3298	(( ii = $numprocs / $threads_per_task ))
3299	export OMP_NUM_THREADS=$threads_per_task
3300	# echo "*** OMP_NUM_THREADS=$OMP_NUM_THREADS"
3301	if [[ $threads_per_task != 1 ]]
3302	then
3303	# increase stack size to unlimited, because large runs
3304	# may abort otherwise
3305	ulimit -Ss unlimited
3306	printf "\n threads per task: $threads_per_task stacksize: unlimited"
3307	fi
3308	if [[ $run_coupled_model = false ]]
3309	then
3310	if [[ "$ocean_file_appendix" = true ]]
3311	then
3312	echo "precursor_ocean" > runfile_atmos
3313	else
3314	echo "precursor_atmos" > runfile_atmos
3315	fi
3316	printf "\n\n"
3317	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3318	then
3319	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3320	then
3321	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3322	# export MPI_DSM_DISTRIBUTE=1
3323	# MPI_DSM_CPULIST: pin MPI processes to cores
3324	if [[ $use_openmp = false ]]
3325	then
3326	if [[ "$sgi_feature" = ice2 ]]
3327	then
3328	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
3329	else
3330	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3331	fi
3332	else
3333	unset MPI_DSM_CPULIST
3334	fi
3335	# MPI_IB_RAILS: use both IB rails on ICE2
3336	export MPI_BUFS_PER_HOST=512
3337	export MPI_IB_RAILS=2
3338	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3339	export MPI_CONNECTIONS_THRESHOLD=8192
3340	echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
3341	export MPI_TYPE_DEPTH=20
3342	echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
3343	export MPI_GROUP_MAX=64
3344	echo "*** MPI_GROUP_MAX=$MPI_GROUP_MAX"
3345	if [[ $use_openmp = true ]]
3346	then
3347	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3348	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3349	else
3350	mpiexec_mpt -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3351	fi
3352
3353	# next is test for openmp usage
3354	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3355	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
3356	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3357	then
3358	export MV2_NUM_PORTS=2
3359	# The default setting of MV2_CPU_MAPPING gives best results
3360	# export MV2_ENABLE_AFFINITY=1
3361	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3362	# if [[ "$sgi_feature" = ice2 ]]
3363	# then
3364	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
3365	# else
3366	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3367	# fi
3368	if [[ $use_openmp = true ]]
3369	then
3370	unset MV2_CPU_MAPPING
3371	export MV2_ENABLE_AFFINITY=0
3372	fi
3373	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
3374	echo "*** MV2_ENABLE_AFFINITY=$MV2_ENABLE_AFFINITY"
3375	if [[ $use_openmp = true ]]
3376	then
3377	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3378	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3379	else
3380	mpiexec -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3381	fi
3382	fi
3383	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3384	then
3385	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3386	else
3387	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3388	fi
3389	else
3390
3391	# currently there is no full MPI-2 support on ICE and XT4
3392	(( iia = $numprocs_atmos / $threads_per_task ))
3393	(( iio = $numprocs_ocean / $threads_per_task ))
3394	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3395	printf "\n using $coupled_mode coupling"
3396	printf "\n\n"
3397
3398	if [[ $coupled_mode = "mpi2" ]]
3399	then
3400	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3401	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3402	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3403	then
3404
3405	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3406	then
3407	# export MPI_LAUNCH_TIMEOUT=360
3408	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3409	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3410	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3411	then
3412	# ulimit -s 300000 # A too large stack size causes problems
3413	# export MV2_NUM_PORTS=2
3414	# export MV2_CPU_MAPPING=0:1:2:3
3415	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3416	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3417	fi
3418
3419	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3420	then
3421
3422	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3423	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3424
3425	else
3426	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3427	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3428	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3429	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3430	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3431	fi
3432	wait
3433
3434	else
3435
3436	echo "coupled_run $iia $iio" > runfile_atmos
3437	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3438	then
3439
3440	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3441	then
3442	# export MPI_LAUNCH_TIMEOUT=360
3443	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3444	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3445	then
3446	# ulimit -s 300000 # A too large stack size causes problems
3447	# export MV2_NUM_PORTS=2
3448	# export MV2_CPU_MAPPING=0:1:2:3
3449	mpiexec ./a.out $ROPTS < runfile_atmos
3450	fi
3451
3452	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3453	then
3454
3455	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3456
3457	elif [[ $host = lck \|\| $host = lckordi ]]
3458	then
3459	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3460	fi
3461	wait
3462	fi
3463
3464	fi
3465	elif [[ $host = decalpha ]]
3466	then
3467	dmpirun -np $numprocs a.out $ROPTS
3468	elif [[ $host = lckyoto ]]
3469	then
3470	set -xv
3471	export P4_RSHCOMMAND=plesh
3472	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
3473	if [[ "$ENVIRONMENT" = BATCH ]]
3474	then
3475	if [[ "$cond2" = fujitsu ]]
3476	then
3477	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
3478	elif [[ "cond2" = pgi ]]
3479	then
3480	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
3481	else
3482	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
3483	fi
3484	else
3485	if [[ "$cond2" = "" ]]
3486	then
3487	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
3488	else
3489	mpirun -np $numprocs ./a.out $ROPTS
3490	fi
3491	fi
3492	set +xv
3493	elif [[ $host = lctit ]]
3494	then
3495	export OMP_NUM_THREADS=$threads_per_task
3496	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3497	if [[ "$threads_per_task" != 1 ]]
3498	then
3499	export MV2_ENABLE_AFFINITY=0
3500	fi
3501	echo "----- PBS_NODEFILE content:"
3502	cat $PBS_NODEFILE
3503	echo "-----"
3504	(( ii = $numprocs / $threads_per_task ))
3505	echo "mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS"
3506	mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS
3507	else
3508	mpprun -n $numprocs a.out $ROPTS
3509	fi
3510	[[ $? != 0 ]] && execution_error=true
3511
3512
3513	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3514	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3515	then
3516	apprentice
3517	fi
3518	else
3519	a.out $ROPTS
3520	fi
3521	fi
3522	if [[ $? != 0 \|\| $execution_error = true ]]
3523	then
3524
3525	# ABBRUCH BEI LAUFZEITFEHLER
3526	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3527	printf "\n +++ runtime error occured"
3528	locat=execution
3529	exit
3530	else
3531	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3532	printf "\n$striche\n *** execution finished \n"
3533
3534	# Stop the dvr streaming server and process the dvr output in order
3535	# to create dvrs- and html-files containing all streams
3536	if [[ "$dvrserver_id" != "" ]]
3537	then
3538	kill $dvrserver_id
3539	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3540
3541	# If there is a directory, data have been output by the
3542	# streaming server. Otherwise, user has chosen dvrp_output=local
3543	if [[ -d DATA_DVR ]]
3544	then
3545
3546	# Add the current dvr configuration file to the dvr output
3547	# directory
3548	cp .dvrserver.config DATA_DVR
3549
3550	# Process the dvr output (option -s for also generating
3551	# sequence mode data)
3552	process_dvr_output -d DATA_DVR -f $fname -s
3553
3554	else
3555
3556	# Process the local output
3557	process_dvr_output -l -d DATA_DVR -f $fname
3558
3559	fi
3560
3561	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3562	then
3563
3564	# Process dvr output generated in local mode (dvrp_output=local)
3565	process_dvr_output -l -d DATA_DVR -f $fname
3566
3567	fi
3568	fi
3569
3570
3571
3572	# Call of combine_plot_fields in order to merge single files written
3573	# by each PE into one file.
3574	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
3575	then
3576	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
3577	printf "\n 2d- and/or 3d-data may be incomplete!"
3578	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
3579	else
3580	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
3581	combine_plot_fields${block}.x
3582	fi
3583
3584
3585
3586	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3587	(( i = 0 ))
3588	while (( i < ioc ))
3589	do
3590	(( i = i + 1 ))
3591	if (( i == 1 ))
3592	then
3593	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
3594	fi
3595	printf "\n >>> ${out_command[$i]}"
3596	eval ${out_command[$i]}
3597	if (( i == ioc ))
3598	then
3599	printf "\n$striche\n"
3600	fi
3601	done
3602
3603
3604	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
3605	if [[ $do_trace = true ]]
3606	then
3607	printf "\n\n"
3608	ls -al
3609	fi
3610
3611
3612
3613	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
3614	(( i = 0 ))
3615	while (( i < iout ))
3616	do
3617	(( i = i + 1 ))
3618	if (( i == 1 ))
3619	then
3620	printf "\n\n *** saving OUTPUT-files:\n$striche"
3621	fi
3622
3623	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3624	files_for_pes=false; filetyp=file
3625	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
3626	then
3627	files_for_pes=true; filetyp=directory
3628	actionout[$i]=""
3629	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
3630	then
3631	actionout[$i]=""
3632	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
3633	then
3634	files_for_pes=true; filetyp=directory
3635	actionout[$i]="ar"
3636	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
3637	then
3638	actionout[$i]="ar"
3639	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
3640	then
3641	files_for_pes=true; filetyp=directory
3642	actionout[$i]="fl"
3643	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
3644	then
3645	actionout[$i]="fl"
3646	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
3647	then
3648	files_for_pes=true; filetyp=directory
3649	actionout[$i]="tr"
3650	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
3651	then
3652	actionout[$i]="tr"
3653	fi
3654
3655	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
3656	then
3657	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
3658	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
3659	then
3660	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
3661	else
3662
3663
3664	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3665	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3666	# REMOTE-RECHNUNGEN
3667	if [[ "${actionout[$i]}" = tr ]]
3668	then
3669	if [[ $localhost != $fromhost ]]
3670	then
3671	if [[ $files_for_pes = false ]]
3672	then
3673	cps=""
3674	cst=""
3675	else
3676	cps=-c
3677	cst="/"
3678	fi
3679	if [[ $localhost = nech ]]
3680	then
3681
3682	# TRANSFER IN EIGENSTAENDIGEM JOB
3683	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3684	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3685	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3686	if [[ $files_for_pes = false ]]
3687	then
3688	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3689	else
3690	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
3691	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
3692	fi
3693
3694	echo "set -x" > transfer_${localout[$i]}
3695	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3696
3697	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
3698	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
3699	printf "\n or higher cycle\n"
3700	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3701
3702	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3703
3704	if [[ $localhost = nech ]]
3705	then
3706	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3707	else
3708	if [[ "$LOGNAME" = b323013 ]]
3709	then
3710	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3711	else
3712	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3713	fi
3714	fi
3715
3716	else
3717
3718	# TRANSFER INNERHALB DIESES JOBS
3719	transfer_failed=false
3720	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
3721	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
3722	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3723	[[ $? != 0 ]] && transfer_failed=true
3724
3725	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3726	# LOKALER MASCHINE ANLEGEN
3727	if [[ $transfer_failed = true ]]
3728	then
3729	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3730	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3731
3732	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3733	# ANLEGEN.
3734	eval local_catalog=${pathout[$i]}
3735	if [[ ! -d $local_catalog ]]
3736	then
3737	printf " *** local directory does not exist. Trying to create:\n"
3738	printf " $local_catalog \n"
3739	mkdir -p $local_catalog
3740	fi
3741	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3742	transfer_problems=true
3743	fi
3744	fi
3745	else
3746
3747	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
3748	actionout[$i]=""
3749	fi
3750	fi
3751
3752
3753	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3754	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3755	# REMOTE-RECHNUNGEN
3756	if [[ "${actionout[$i]}" = tra ]]
3757	then
3758	if [[ $localhost != $fromhost ]]
3759	then
3760	if [[ $localhost = ibmh \|\| $localhost = nech ]]
3761	then
3762
3763	# TRANSFER IN EIGENSTAENDIGEM JOB
3764	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3765	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3766	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3767	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3768
3769	echo "set -x" > transfer_${localout[$i]}
3770	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3771
3772	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
3773	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
3774	printf "\n or higher cycle\n"
3775	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3776
3777	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3778
3779	if [[ $localhost = nech ]]
3780	then
3781	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3782	else
3783	if [[ $LOGNAME = b323013 ]]
3784	then
3785	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3786	else
3787	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3788	fi
3789	fi
3790
3791	else
3792
3793	# TRANSFER INNERHALB DIESES JOBS
3794	transfer_failed=false
3795	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
3796	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
3797	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3798	[[ $? != 0 ]] && transfer_failed=true
3799
3800	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3801	# LOKALER MASCHINE ANLEGEN
3802	if [[ $transfer_failed = true ]]
3803	then
3804	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3805	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3806
3807	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3808	# ANLEGEN
3809	eval local_catalog=${pathout[$i]}
3810	if [[ ! -d $local_catalog ]]
3811	then
3812	printf " *** local directory does not exist. Trying to create:\n"
3813	printf " $local_catalog \n"
3814	mkdir -p $local_catalog
3815	fi
3816
3817	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3818	transfer_problems=true
3819	fi
3820	fi
3821	else
3822
3823	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
3824	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
3825	actionout[$i]=a
3826	fi
3827	fi
3828
3829
3830	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
3831	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
3832	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
3833	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
3834	if [[ "${actionout[$i]}" = fl ]]
3835	then
3836	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3837	chmod g+rx $tmp_data_catalog
3838	if [[ $files_for_pes = false ]]
3839	then
3840	printf "\n >>> OUTPUT: ${localout[$i]} to"
3841	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3842	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
3843	else
3844	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
3845	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3846	mkdir $tmp_data_catalog/${frelout[$i]}
3847	cd ${localout[$i]}
3848	for file in $(ls *)
3849	do
3850	ln -f $file $tmp_data_catalog/${frelout[$i]}
3851	done
3852	cd $TEMPDIR
3853	fi
3854
3855
3856	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
3857	if [[ $store_on_archive_system = true ]]
3858	then
3859
3860	if [[ $archive_system = asterix ]]
3861	then
3862	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3863	if [[ $files_for_pes = false ]]
3864	then
3865	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3866	else
3867	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3868	fi
3869	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3870	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
3871	echo "then" >> archive_${frelout[$i]}
3872	echo " do_stageout=false" >> archive_${frelout[$i]}
3873	echo "else" >> archive_${frelout[$i]}
3874	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
3875	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
3876	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
3877	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
3878	if [[ $files_for_pes = false ]]
3879	then
3880	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
3881	else
3882	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
3883	fi
3884	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
3885	echo "fi" >> archive_${frelout[$i]}
3886	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3887	elif [[ $archive_system = DMF ]]
3888	then
3889	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3890	if [[ $files_for_pes = false ]]
3891	then
3892	printf "\n +++ archiving of single files impossible with $archive_system !\n"
3893	locat=DMF
3894	exit
3895	else
3896	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
3897	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
3898	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
3899	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
3900	fi
3901	elif [[ $archive_system = tivoli ]]
3902	then
3903	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3904	if [[ $files_for_pes = false ]]
3905	then
3906	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3907	echo "set -x" >> archive_${frelout[$i]}
3908	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3909	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3910	else
3911
3912	echo "set -x" >> archive_${frelout[$i]}
3913	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
3914	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3915	cd $tmp_data_catalog
3916	all_files=`ls -1 ${frelout[$i]}/*`
3917	cd - > /dev/null
3918	(( inode = 0 ))
3919	(( tp1 = tasks_per_node + 1 ))
3920	while (( inode < nodes ))
3921	do
3922	# echo "*** all_files = \"$all_files\" "
3923	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3924	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3925	# echo "*** tasks_per_node = \"$tasks_per_node\" "
3926	# echo "*** files = \"$files\" "
3927	# echo "*** all_files = \"$all_files\" "
3928	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3929	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3930	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
3931	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3932	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3933	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3934	(( inode = inode + 1 ))
3935	done
3936	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3937	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3938	fi
3939	elif [[ $archive_system = ut ]]
3940	then
3941	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3942	if [[ $files_for_pes = false ]]
3943	then
3944	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3945	echo "set -x" >> archive_${frelout[$i]}
3946	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3947	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3948	else
3949
3950	echo "set -x" >> archive_${frelout[$i]}
3951	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
3952	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
3953	cd $tmp_data_catalog
3954	all_files=`ls -1 ${frelout[$i]}/*`
3955	cd - > /dev/null
3956	(( inode = 0 ))
3957	(( tp1 = tasks_per_node + 1 ))
3958	while (( inode < nodes ))
3959	do
3960	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3961	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3962	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3963	(( inode = inode + 1 ))
3964	done
3965	fi
3966	elif [[ $archive_system = none ]]
3967	then
3968	printf " +++ archiving on $localhost not available!\n"
3969	fi
3970
3971	if [[ $archive_system != none ]]
3972	then
3973	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
3974	then
3975	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
3976	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog archive_${frelout[$i]}
3977	elif [[ $localhost = nech ]]
3978	then
3979	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
3980	fi
3981	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3982	fi
3983	else
3984	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
3985	fi
3986
3987
3988	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
3989	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
3990	if [[ $files_for_pes = false ]]
3991	then
3992	cat /dev/null > ${pathout[$i]}
3993	else
3994	mkdir -p ${pathout[$i]}
3995	fi
3996
3997	fi
3998
3999
4000	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
4001	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
4002	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4003	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
4004	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
4005	# GEMAESSEN ARCHIVIERUNGEN GESETZT
4006	if [[ "${actionout[$i]}" = ar ]]
4007	then
4008	if [[ $files_for_pes = false ]]
4009	then
4010	printf "\n >>> OUTPUT: ${localout[$i]} to"
4011	printf "\n ${pathout[$i]}"
4012	printf "\n File will be copied to archive-system ($archive_system) !\n"
4013	else
4014	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
4015	printf "\n ${pathout[$i]}"
4016	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
4017	fi
4018	mv ${localout[$i]} ${frelout[$i]}
4019
4020	file_saved=false
4021
4022	if [[ $archive_system = asterix ]]
4023	then
4024	do_stageout=true
4025	(( stageout_anz = 0 ))
4026	while [[ $do_stageout = true ]]
4027	do
4028	if [[ $files_for_pes = false ]]
4029	then
4030	stageout ${frelout[$i]} > STAGE_OUTPUT
4031	else
4032	stageout -t ${frelout[$i]} > STAGE_OUTPUT
4033	fi
4034	cat STAGE_OUTPUT
4035	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
4036	then
4037	file_saved=true
4038	do_stageout=false
4039	else
4040	if [[ $files_for_pes = false ]]
4041	then
4042	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
4043	else
4044	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
4045	fi
4046	(( stageout_anz = stageout_anz + 1 ))
4047	if (( stageout_anz == 10 ))
4048	then
4049	printf "\n +++ stoped after 10 unsuccessful tries!"
4050	archive_save=false
4051	do_stageout=false
4052	else
4053	printf "\n *** new try to store on archive after 15 min:"
4054	sleep 900
4055	fi
4056	fi
4057	done
4058	elif [[ $archive_system = DMF ]]
4059	then
4060	if [[ $files_for_pes = false ]]
4061	then
4062	printf "\n +++ archiving of single files impossible on $archive_system!\n"
4063	locat=DMF
4064	exit
4065	else
4066	rm -rf $ARCHIVE/${frelout[$i]}
4067	cp -r ${frelout[$i]} $ARCHIVE
4068	fi
4069	file_saved=true
4070	elif [[ $archive_system = tivoli ]]
4071	then
4072	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4073	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4074	# GELEGT WERDEN
4075	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4076	chmod g+rx $tmp_data_catalog
4077	if [[ $files_for_pes = false ]]
4078	then
4079	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4080	else
4081	mkdir $tmp_data_catalog/${frelout[$i]}
4082	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4083	fi
4084
4085	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4086	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4087	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4088	if [[ $files_for_pes = false ]]
4089	then
4090	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4091	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4092	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4093	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4094	else
4095	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4096	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4097	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4098	fi
4099
4100	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
4101	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4102	file_saved=true
4103
4104	elif [[ $archive_system = ut ]]
4105	then
4106	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4107	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4108	# GELEGT WERDEN
4109	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4110	chmod g+rx $tmp_data_catalog
4111	if [[ $files_for_pes = false ]]
4112	then
4113	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4114	else
4115	mkdir $tmp_data_catalog/${frelout[$i]}
4116	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4117	fi
4118
4119	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4120	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4121	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4122	if [[ $files_for_pes = false ]]
4123	then
4124	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4125	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4126	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4127	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4128	else
4129	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4130	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4131	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4132	fi
4133
4134	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
4135	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4136	file_saved=true
4137
4138	else
4139	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
4140	archive_save=false
4141	fi
4142	if [[ $file_saved = true ]]
4143	then
4144	if [[ $files_for_pes = false ]]
4145	then
4146	cat /dev/null > ${pathout[$i]}
4147	else
4148	mkdir -p ${pathout[$i]}
4149	fi
4150	fi
4151	fi
4152
4153	# APPEND AUF LOKALER MASCHINE
4154	if [[ "${actionout[$i]}" = "a" ]]
4155	then
4156	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
4157	cat ${localout[$i]} >> ${pathout[$i]}
4158	fi
4159
4160	# KOPIEREN AUF LOKALER MASCHINE
4161	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
4162	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
4163	then
4164
4165	# KOPIEREN AUF EINPROZESSORMASCHINE
4166	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4167	then
4168	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
4169	if [[ $link_local_output = true ]]
4170	then
4171	printf " using ln -f\n"
4172	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4173	fi
4174	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4175	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
4176	then
4177	if [[ $link_local_output = true ]]
4178	then
4179	printf " ln failed, using cp...\n"
4180	fi
4181	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4182	fi
4183	else
4184	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
4185	if [[ $link_local_output = true ]]
4186	then
4187	printf " using ln -f\n"
4188	ln -f ${localout[$i]} ${pathout[$i]}
4189	fi
4190	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4191	if [[ ! -f "${pathout[$i]}" ]]
4192	then
4193	if [[ $link_local_output = true ]]
4194	then
4195	printf " ln failed, using cp...\n"
4196	fi
4197	cp ${localout[$i]} ${pathout[$i]}
4198	fi
4199	fi
4200
4201	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
4202	then
4203
4204	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
4205	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
4206	# WIRD DANN KOPIERT
4207	# PER MOVE UMBENANNT WERDEN
4208	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4209	if [[ $link_local_output = true ]]
4210	then
4211	printf " using ln -f\n"
4212	mkdir ${pathout[$i]}
4213	cd ${localout[$i]}
4214	for file in $(ls *)
4215	do
4216	ln -f $file ${pathout[$i]}
4217	done
4218	cd $TEMPDIR
4219	fi
4220	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4221	if [[ ! -f "${pathout[$i]}/_0000" ]]
4222	then
4223	if [[ $link_local_output = true ]]
4224	then
4225	printf " ln failed for .../_0000, using cp...\n"
4226	fi
4227	cp -r ${localout[$i]} ${pathout[$i]}
4228	fi
4229
4230	fi
4231	fi
4232	done
4233	if (( i != 0 ))
4234	then
4235	if [[ $transfer_problems = true ]]
4236	then
4237	printf "\n$striche\n *** OUTPUT-files saved"
4238	printf "\n +++ WARNING: some data transfers failed! \n"
4239	else
4240	printf "\n$striche\n *** all OUTPUT-files saved \n"
4241	fi
4242	fi
4243
4244
4245	# EVENTUELL FOLGEJOB STARTEN
4246	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4247	if [[ -f CONTINUE_RUN ]]
4248	then
4249
4250	if [[ $archive_save = true ]]
4251	then
4252
4253	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4254	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4255	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4256	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4257	# HANDEN
4258	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4259	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4260	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4261	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4262	then
4263	mc=`echo $mc \| sed 's/#/f/g'`
4264	fi
4265
4266
4267	# JOB STARTEN
4268	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4269	echo " $mc"
4270	printf "\n$striche\n"
4271	if [[ $localhost != $fromhost ]]
4272	then
4273
4274	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibms ]]
4275	then
4276	echo "*** ssh will be used to initiate restart-runs!"
4277	echo " return_addres=\"$return_addres\" "
4278	echo " return_username=\"$return_username\" "
4279	if [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4280	then
4281	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export LD_LIBRARY_PATH=\$LD_LIBRARY_PATH:/muksoft/packages/intel/Compiler/11.0/083/lib/intel64/;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4282	else
4283	if [[ $localhost = ibmkisti ]]
4284	then
4285	ssh $usern@gaiad "ssh $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4286	else
4287	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4288	fi
4289	fi
4290	else
4291	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4292	locat=restart; exit
4293	fi
4294
4295	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4296	# DER AKTUELLE JOB ENDET
4297	if [[ $queue = special1q ]]
4298	then
4299	sleep 120
4300	else
4301	sleep 30
4302	fi
4303
4304	else
4305
4306	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4307	# RUFEN WERDEN, AUSSER AUF lcfimm
4308	cd $LOCAL_PWD
4309	if [[ $localhost = lcfimm ]]
4310	then
4311	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4312	else
4313	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4314	fi
4315	cd - > /dev/null
4316	fi
4317	printf "\n$striche\n *** restart-run initiated \n"
4318
4319
4320	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4321	# GEHOLT WORDEN SIND, LOESCHEN
4322	(( i = 0 ))
4323	while (( i < iin ))
4324	do
4325	(( i = i + 1 ))
4326	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4327	then
4328	rm -r $tmp_data_catalog/${frelin[$i]}
4329	fi
4330	done
4331
4332	else
4333
4334	printf "\n +++ no restart-run possible, since errors occured"
4335	printf "\n during the archive process"
4336	fi
4337
4338	fi
4339
4340
4341
4342	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4343	if [[ "$email_notification" != "none" ]]
4344	then
4345
4346	if [[ $localhost != $fromhost ]]
4347	then
4348	if [[ -f CONTINUE_RUN ]]
4349	then
4350	echo "PALM restart run necessary" > email_text
4351	echo "description header of actual run:" >> email_text
4352	cat CONTINUE_RUN >> email_text
4353	echo "mrun-command to restart:" >> email_text
4354	echo "$mc" >> email_text
4355	else
4356	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4357	fi
4358	mail $email_notification < email_text
4359	printf "\n *** email notification sent to \"$email_notification\" "
4360	fi
4361	fi
4362
4363
4364
4365	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4366	cd $HOME
4367	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4368
4369	else
4370
4371
4372	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4373	# CHENDE AKTIONEN DURCHGEFUEHRT
4374
4375	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4376	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q \$queue -R $return_addres -U $return_username -u $remote_username"
4377	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4378	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4379	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4380	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4381	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4382	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4383	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4384	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4385	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4386	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4387	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4388	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4389	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4390	if [[ $use_openmp = true ]]
4391	then
4392	mrun_com=${mrun_com}" -O $threads_per_task"
4393	fi
4394	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4395	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
4396	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4397	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4398	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4399	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4400	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4401	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4402	if [[ $do_remote = true ]]
4403	then
4404	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4405	fi
4406
4407
4408	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4409	jobfile=jobfile.$RANDOM
4410
4411
4412	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4413	echo "mkdir $TEMPDIR" >> $jobfile
4414	echo "cd $TEMPDIR" >> $jobfile
4415
4416
4417	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4418	if [[ $do_trace = true ]]
4419	then
4420	echo "set -x" >> $jobfile
4421	else
4422	echo "set +vx" >> $jobfile
4423	fi
4424
4425
4426	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4427	# DATEI FUER DEN JOB
4428	if [[ $( echo $host \| cut -c1-5 ) = lcsgi \|\| $host = ibmkisti ]]
4429	then
4430
4431	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4432	# KOPIEREN
4433	if [[ $restart_run != true ]]
4434	then
4435	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4436	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4437	fi
4438
4439	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4440	# (BEI JOBS AUF LOKALEM RECHNER REICHT CP)
4441	echo "set -x" >> $jobfile
4442	if [[ $host = $localhost ]]
4443	then
4444	echo "cp -r $working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4445	else
4446	if [[ $host != ibmkisti ]]
4447	then
4448	echo "scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4449	else
4450	# on KISTI's IBM firewall is only opened on interactive node
4451	echo "localdir=\`pwd\`" >> $jobfile
4452	echo "ssh $remote_username@gaiad \"cd \$localdir; scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
4453	fi
4454	fi
4455	echo "export SOURCES_COMPLETE=true" >> $jobfile
4456
4457	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4458	# ARBEITSVERZEICHNIS VERSCHIEBEN
4459	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4460	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4461	echo "execute_mrun=true" >> $jobfile
4462	echo " " >> $jobfile
4463
4464	else
4465
4466	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4467	# SOWIE GEGEBENENFALLS DES MAKEFILES
4468	if [[ $do_compile = true ]]
4469	then
4470
4471	source_catalog=SOURCES_FOR_RUN_$fname
4472
4473	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4474	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4475	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4476	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4477	echo "export SOURCES_COMPLETE=true" >> $jobfile
4478	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4479
4480	for filename in $source_list
4481	do
4482	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4483	echo "cat > $filename << \"%END%\"" >> $jobfile
4484	cat $source_catalog/$filename >> $jobfile
4485	echo " " >> $jobfile
4486	echo "%END%" >> $jobfile
4487	echo " " >> $jobfile
4488	done
4489
4490	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4491	echo "cat > Makefile << \"%END%\"" >> $jobfile
4492	cat $source_catalog/Makefile >> $jobfile
4493	echo " " >> $jobfile
4494	echo "%END%" >> $jobfile
4495	echo " " >> $jobfile
4496
4497	echo "cd - > /dev/null" >> $jobfile
4498
4499	fi
4500
4501
4502	# ABSPEICHERN DER KONFIGURATIONSDATEI
4503	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4504	echo "cat > $config_file << \"%END%\"" >> $jobfile
4505	cat $config_file >> $jobfile
4506	echo "%END%" >> $jobfile
4507	echo " " >> $jobfile
4508
4509
4510	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
4511	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4512	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
4513	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
4514	echo "%END%" >> $jobfile
4515	echo "chmod u+x $mrun_script_name" >> $jobfile
4516	echo "execute_mrun=true" >> $jobfile
4517	echo " " >> $jobfile
4518
4519	fi
4520
4521
4522	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
4523	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
4524	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
4525	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
4526	if [[ $do_remote = true ]]
4527	then
4528	(( i = 0 ))
4529	while (( i < iin ))
4530	do
4531	(( i = i + 1 ))
4532	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
4533	if [[ "${transin[$i]}" = job ]]
4534	then
4535	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
4536	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
4537	echo " " >> $jobfile
4538	echo "%END%" >> $jobfile
4539	else
4540	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
4541	fi
4542
4543	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
4544	echo "if [[ \$? = 1 ]]" >> $jobfile
4545	echo "then" >> $jobfile
4546	echo " echo \" \" " >> $jobfile
4547	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
4548	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
4549	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
4550	echo " execute_mrun=false" >> $jobfile
4551	echo "fi" >> $jobfile
4552	done
4553	fi
4554
4555	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
4556	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
4557	echo "LOCAL_PWD=$working_directory" >> $jobfile
4558	echo "export LOCAL_PWD" >> $jobfile
4559
4560	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
4561	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
4562	echo "export LOCAL_MRUN_PATH" >> $jobfile
4563
4564	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
4565	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
4566	then
4567	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
4568	fi
4569
4570	# MRUN AUF ZIELRECHNER AUFRUFEN (queue is workaround for ibmkisti)
4571	echo "set -x" >> $jobfile
4572	echo "queue=$queue" >> $jobfile
4573	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
4574
4575	echo 'ls -al; echo `pwd`' >> $jobfile
4576	echo "cd \$HOME" >> $jobfile
4577	echo "rm -rf $TEMPDIR" >> $jobfile
4578
4579
4580
4581
4582	# JOB PER SUBJOB STARTEN
4583	if [[ $silent = false ]]
4584	then
4585	printf "\n "
4586	else
4587	printf "\n\n"
4588	fi
4589
4590	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $jobfile
4591	rm -rf $jobfile
4592
4593
4594	fi # ENDE REMOTE-TEIL
4595
4596
4597
4598	# ENDE DER PROZEDUR

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