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source: palm/trunk/SCRIPTS/mrun @ 514

Last change on this file since 514 was 505, checked in by raasch, 15 years ago
mrun modification for lckyoto
Property svn:keywords set to `Id Rev`
File size: 172.3 KB

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1	#!/bin/ksh
2	# mrun - script for running PALM jobs
3	# $Id: mrun 505 2010-03-08 06:59:10Z heinze $
4
5	# Procedure for interactive/batch PALM runs (initial runs and automatic
6	# restart runs)
7
8	# Last changes:
9	# 03/03/94 - Siggi - Entwicklungsbeginn
10	# 21/03/94 - Siggi - Entwicklungsabschluss (Version 1.0)
11	# 09/12/94 - Siggi - allexport unterbunden; statt dessen werden jetzt ein-
12	# zelne Variable exportiert. Dies ist noetig, weil an-
13	# sonsten irgendein Speicher ueberlaeuft und von mrun
14	# aufgerufene Programme (z.B. stageout) mit Fehlern
15	# abbrechen (too many arguments)
16	# 20/06/95 - Siggi - noclobber muss explizit abgeschaltet, da jetzt
17	# defaultmaessig im RRZN-Profile eingeschaltet
18	# 10/06/97 - Siggi - Zusaetzliche Option -C bei cpp, damit // nicht
19	# wegfallen
20	# 25/04/00 - Siggi - Version 1.5
21	# remote_addres und remote_user in return_addres bzw.
22	# return_username umbenannt, return_username wird dem
23	# mrun-Aufruf im Job ueber Option -U mitgegeben.
24	# Neue Variable remote_username, die beim interaktiven
25	# mrun-Aufruf zwingend ueber die neue Option -u oder
26	# in der Konfigurationsdatei angegeben werden muss.
27	# 08/02/01 - Siggi - Alle mrun-Meldungen ins englische uebersetzt,
28	# Version 1.7
29	# 05/05/02 - Siggi - Uebersetzungen mittels make-Mechanismus moeglich
30	# 21/11/02 - Siggi - ENV-Variable XLFRTEOPTS wird vor Ausfuehrung auf
31	# IBM gesetzt, um Record-Laenge der NAMELIST-Dateien,
32	# zu bestimmen; Praeprozessoroptionen haben nun alle
33	# die Form -Dtext=text, weil auf IBM sonst text durch
34	# die leere Zeichenkette ersetzt wird
35	# 01/08/03 - Siggi - Test of implementing dvrp+1PE on ibm
36	# 07/01/04 - Siggi - additional preprocessor directive for ibm included
37	# (-D$OMP=OMP) in order to avoid problems with
38	# OMP_NUM_THREADS
39	# 04/01/05 - Siggi - archiving on hanni and berni is done in separate
40	# tar files, one for each node used
41	# 07/01/04 - Siggi - old code for t3e, vpp and hpcs eliminated
42	# 09/01/05 - Siggi - workaround for getting the IP address on gfdl3
43	# 17/01/05 - Siggi - job for data transfer to local machine now within
44	# job class c1 (HLRN)
45	# 27/01/05 - Siggi - IP address workaround for gfdl3 removed
46	# 28/01/05 - Siggi - tar-filenames on $PERM (HLRN) now include the
47	# base filename and cycle number
48	# 16/02/05 - Gerald - hababai validated
49	# 14/03/05 - Siggi - abort on NEC after first runtime error (F_ERRCNT)
50	# 29/03/05 - Marcus - berni*-en0 validated
51	# 21/04/05 - Siggi - transfer-job-protocol for avs-data is no more stored
52	# 24/04/05 - Siggi - netcdf support on lcmuk
53	# 25/04/05 - Siggi - netcdf support on gfld3 (decalpha)
54	# 11/05/05 - Siggi - files with non-numeric extensions (.xxx after cycle
55	# number) can now be used within interactive runs
56	# 12/05/05 - Siggi - netcdf support on ibm
57	# 13/05/05 - Siggi - error in tar-filenames on $PERM (HLRN) removed
58	# 18/05/05 - Siggi - netcdf support on nec
59	# 24/05/05 - Siggi - netcdf support on ibms
60	# 14/06/05 - Siggi - sleep interval after submit of restart job increased
61	# to 30 seconds
62	# 28/06/05 - Siggi - bora adjusted to new intel compiler (LD_LIBRARY_
63	# PATH is temporarily set)
64	# 07/09/05 - Siggi - setting of MP_EAGER_LIMIT switched off because it
65	# caused warnings in the job protocol
66	# 20/10/05 - Siggi - update of netcdf-version on decalpha (gfdl3)
67	# 25/10/05 - Siggi - error in listing files for getting the cycle number
68	# removed
69	# 26/10/05 - Siggi - new paths for dvrp-library, transfer of catalogs
70	# realized by file attribute trpe
71	# 28/10/05 - Siggi - if existing, the file extension is output in case
72	# of missing input file - no job abort in case of
73	# missing input files with file extensions
74	# (preliminary solution)
75	# 31/10/05 - Siggi - data transfer from nech now within seperate job
76	# 04/11/05 - Siggi - netcdf 3.6.0-p1 on ibmh/ibmb
77	# 07/12/05 - Siggi - gallego and elephanta admitted
78	# 30/12/05 - Siggi - gfdl5 (ibmy) admitted
79	# 10/01/06 - Siggi - cpp directive for NetCDF 64bit support
80	# 20/01/06 - Siggi - cpp directive for ibmy
81	# 09/02/06 - Siggi - ibmy admitted for batch mode
82	# 13/04/06 - Siggi - ostria admitted
83	# 18/04/06 - Siggi - usage of OpenMP implemented (additional option -O)
84	# 10/05/06 - Siggi - environment variable XLSMPOPTS set on IBM for
85	# optimization of OpenMP runs (option stacksize is
86	# necessary for large gridpoint numbers because
87	# otherwise a segmentation fault occurs)
88	# 23/05/05 - Siggi - lctit (SUN Fire X4600) admitted
89	# 21/08/06 - Siggi - standard mrun path on scirocco is as on bora
90	# 23/08/06 - Siggi - netcdf support for scirocco (notebook)
91	# 20/09/06 - Marcus - add DVRP library on nech
92	# 24/10/06 - Siggi - Environment variables for PALM steering are written
93	# on local NAMELIST file ENVPAR
94	# 24/11/06 - Siggi - levanto admitted, maestro switched to ifc 9.1
95	# 28/11/06 - Siggi - call to interpret_config.x_levanto because of SuSe 10
96	# 06/02/07 - Siggi - add DVRP library on lcmuk
97	# 07/02/07 - Siggi - revision of source code handling, source code is
98	# now expected in directory given by source_path and
99	# not in the current working directory, source code
100	# files provided in add_source_path are allways
101	# compiled, source code to be compiled is allways
102	# sampled in SOURCES_FOR_RUN_$fname which is a
103	# subdirectory of the current working directory,
104	# -s TEST changed to -s WRITE_PERMIT or -s WP,
105	# adapted for RIAM (neck)
106	# bugfix for cycle number of output file (extout)
107	# all hpmuk-related code removed
108	# 14/02/07 - Siggi - dvrp support for neck added
109	# 28/02/07 - Siggi - empty lines in configuration file are accepted
110	# mrun_path replaced by PALM_BIN,
111	# all machines are calling interpret_config.x
112	# 14/03/07 - Siggi - fimm admitted, revision number added to terminal
113	# output
114	# 16/03/07 - Siggi - adjustments for lctit
115	# 29/03/07 - Siggi - global revision transfered to batch job by new
116	# option -G
117	# 30/03/07 - Siggi - compilation "by hand" removed, cpp-directives/options
118	# + netcdf/dvrp-options are read from configuration
119	# file, host identifier (local_host) is read from
120	# config file, code related to ftp filetransfer
121	# removed (incl. option -f)
122	# 19/06/07 - Siggi - time limit for cdata jobs increased
123	# 25/07/07 - Siggi - two sets of executables can be started on lcmuk,
124	# if new option -Y (coupling) is given,
125	# output of executables to aout_output removed,
126	# messages are immediately written to stdout instead
127	# 03/08/07 - Marcus - add XOPT="-X $numprocs" for lcfimm
128	# 09/08/07 - Marcus - workaround on lcfimm to propagate environment
129	# variables out to the nodes in coupled mode -disabled-
130	# 13/08/07 - Marcus - start local restart jobs per ssh on lcfimm
131	# 28/08/07 - Marcus - completely remove workaround on lcfimm to propagate
132	# environment variables out to the nodes in coupled mode
133	# 15/10/07 - Siggi - Preliminary adjustments for lctit, based on Jin's
134	# suggestions
135	# 19/10/07 - Marcus - further adjustments for lctit: add new optional
136	# argument -g group_number, admit all sla* node_usage
137	# queues
138	# 30/10/07 - Marcus - further adjustments for queues on lctit
139	# 14/02/08 - Bjoern - link of restart files with long file name possible
140	# 28/02/08 - Marcus - If environment variable link_local_output is set to
141	# true, mrun tries "ln -f" on local output and resorts
142	# to "cp" or "cp -r" on error
143	# 15/04/08 - Siggi - argument -c introduced to most of the subjob calls,
144	# which allows the user to choose his own job catalog
145	# by setting job_catalog in the configuration file
146	# (default is ~/job_queue),
147	# workaround for mpiexec with -env option,
148	# adjustments for lcxt4 (Bergen Center for Computational
149	# Science)
150	# 22/05/08 - Marcus - If environment variable link_local_input is set to
151	# true, mrun tries "ln -f" on local input and resorts
152	# to "cp" or "cp -r" on error
153	# 27/05/08 - Siggi - PATH is set to PALM_BIN everywhere (missing so far)
154	# 14/07/08 - Siggi - adjustments for lcsgih
155	# 08/08/08 - Marcus - typo removed in lcxt4 branch
156	# 17/09/08 - Siggi - restart mechanism adjusted for lcsgi
157	# 02/10/08 - BjornM - argument "-Y" modified, adjustments for coupled runs
158	# 21/10/08 - Siggi - bugfix for the case that -K has more than one
159	# argument
160	# 08/11/08 - Siggi - bugfix for depository path settings in configuration
161	# file
162	# 11/11/08 - Siggi - rules for using user code files changed: user
163	# code splitted into one file per subroutine,
164	# user can provide his/her own makefile, only
165	# default source-code filenames are allowed
166	# 14/11/08 - Siggi - cond1 and cond2 are part of the depository name
167	# 08/01/09 - Siggi - mpi module on sgi machines to be used can be set
168	# with environment variable mpilib
169	# 13/01/09 - Siggi - totalview on hice/bice can be used in debug mode
170	# using environment variable totalview
171	# 25/02/09 - Siggi - cputime-option (-t) is allowed to be omitted for
172	# interactive runs
173	# 05/03/09 - Siggi - adjustments for new NEC-SX9 at RIAM (necriam)
174	# 16/03/09 - Siggi - dvrp_lib, dvrp_inc replaced by dvr_lib, dvr_inc,
175	# dvr streaming server is automatically started using
176	# new variable dvr_server and a configuration file
177	# .dvrserver.config,
178	# processing of dvr output files using new script
179	# process_dvr_output implemented, in order to make
180	# dvr application more user friendly
181	# 20/03/09 - Marcus - update of n1ge command for lctit
182	# 16/04/09 - Siggi - new option -y for precursor (uncoupled) ocean runs
183	# to be followed by a coupled atmosphere-ocean run
184	# 21/04/09 - Siggi - adjustments for new IBM at DKRZ, which is now ibmh
185	# 24/06/09 - BjornM - adjustments for coupled/precursor runs on ibmy
186	# 08/07/09 - Siggi - default value for email_notification is none,
187	# option -e added to subjob
188	# 19/08/09 - Marcus - MPI debug option
189	# 21/08/09 - Marcus - totalview on hice/bice also available for mvapich2
190	# 25/08/09 - BjornM - adpated for lck
191	# 26/08/09 - Siggi - additional environment variables for mpt on ice2
192	# 26/08/09 - Marcus - adjustment for ice2 on lcsgib
193	# 29/09/09 - Siggi - default value for archiving is false, option "-A"
194	# switches on archiving, archiving on SGI-ICE enabled
195	# 16/10/09 - Carolin- adjustments for archiving on SGI-ICE of binary files;
196	# adjustment for special1q
197	# 18/12/09 - Carolin- modification of archiving (permq)
198	# 01/02/10 - Siggi - adapted for lcxt5m and lckyoto (Fujitsu HX600)
199	# 03/02/10 - Siggi - make options (mopts) to be set by configuration file
200	# implemented
201	# 08/02/10 - Siggi - loading of modules now controlled via configuration
202	# file (modules)
203	# 02/03/10 - Siggi - for each block in the configuration file, separate
204	# utility programs are used, combine_plot_fields is
205	# directly called and must not be given by an output
206	# command in the configuration file any more
207
208
209
210	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
211
212	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
213	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
214	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
215
216	AddFilenames=""
217	additional_conditions=""
218	add_source_path=""
219	afname=""
220	archive_save=true
221	archive_system=none
222	compiler_name=""
223	cond1=""
224	cond2=""
225	config_file=.mrun.config
226	coupled_dist=""
227	coupled_mode="mpi1"
228	cpp_opts=""
229	cpp_options=""
230	cpumax=0
231	cpurest=0
232	delete_temporary_catalog=true
233	do_batch=false
234	do_compile=true
235	do_remote=false
236	do_stagein=true
237	do_stageout=true
238	do_trace=false
239	email_notification="none"
240	exclude=""
241	executable=""
242	execution_error=false
243	fimm=false
244	fname=test
245	fromhost=""
246	global_revision=""
247	group_number=none
248	host=""
249	host_file=""
250	hp=""
251	ignore_archive_error=false
252	input_list=""
253	interpreted_config_file=""
254	job_catalog="~/job_queue"
255	job_on_file=""
256	keep_data_from_previous_run=false
257	link_local_input=false
258	link_local_output=false
259	localhost_realname=$(hostname)
260	local_compile=false
261	local_dvrserver_running=.FALSE.
262	locat=normal
263	mainprog=""
264	makefile=""
265	mc=$0
266	while [[ $(echo $mc \| grep -c "/") != 0 ]]
267	do
268	mc=`echo $mc \| cut -f2- -d"/"`
269	done
270	module_calls=""
271	mrun_script_name=$mc
272	netcdf_inc=""
273	netcdf_lib=""
274	netcdf_support=false
275	node_usage=default
276	numprocs=""
277	numprocs_atmos=0
278	numprocs_ocean=0
279	OOPT=""
280	openmp=false
281	output_list=""
282	package_list=""
283	punkte="..........................................................."
284	queue=none
285	read_from_config=""
286	restart_run=false
287	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
288	if [[ $return_addres = 130.75.105.158 ]]
289	then
290	return_addres=172.20.25.41
291	echo "+++ WARNING: return_addres changed to $return_addres !!!!!"
292	fi
293	return_password=""
294	return_username=$LOGNAME
295	remotecall=false
296	remote_username=""
297	run_coupled_model=false
298	run_mode=""
299	scirocco=false
300	store_on_archive_system=false
301	striche=" ----------------------------------------------------------------------------"
302	silent=false
303	source_list=""
304	source_path=SOURCE
305	tasks_per_node=""
306	threads_per_task=1
307	tmpcreate=false
308	tmp_data_catalog=""
309	transfer_problems=false
310	usern=$LOGNAME
311	use_openmp=false
312	working_directory=`pwd`
313	TOPT=""
314	XOPT=""
315	zeit=$( date \| cut -c 12-19 )
316
317	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
318	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
319
320	typeset -R30 calltime
321	typeset -L20 spalte1
322	typeset -L40 spalte2
323	typeset -L60 spalte3
324	typeset -L35 string1=`date`
325	typeset -L12 string2=$usern
326	typeset -L12 string3=$localhost_realname
327	typeset -L12 string4
328	typeset -L12 string5
329	typeset -L30 version="MRUN 2.0 Rev$Rev: 505 $"
330
331
332
333	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
334	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
335
336	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
337	# EXPORTIERT WERDEN
338	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
339	export group_number input_list memory numprocs output_list queue run_mode
340
341
342
343	# FEHLERBEHANDLUNG
344	# BEI EXIT:
345	trap 'rm -rf $working_directory/tmp_mrun
346	if [[ $locat != localhost ]]
347	then
348	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
349	# then
350	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
351	#MRUN-calls on $localhost
352	#
353	#date and time user localhost remotehost termination mrun-command
354	#--------------------------------------------------------------------------------------------------------------------
355	#%STATEND%
356	# chmod 666 ${mrun_path}/statistik/mrun_statistik
357	# fi
358	#
359	# # EINTRAG IN DIE STATISTIK-DATEI
360	# string4=$host
361	# string5=$locat
362	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
363	# then
364	# if [[ $do_batch = true ]]
365	# then
366	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
367	# else
368	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
369	# fi
370	# fi
371	echo " " > /dev/null
372	fi
373
374	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
375	then
376
377	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
378	(( i = 0 ))
379	while (( i < iec ))
380	do
381	(( i = i + 1 ))
382	printf "\n *** Execution of ERROR-command:\n"
383	printf " >>> ${err_command[$i]}\n"
384	eval ${err_command[$i]}
385	done
386	if [[ -n $interpreted_config_file ]] then
387	rm -rf $interpreted_config_file
388	fi
389	if [[ -n .mrun_environment ]] then
390	rm -rf .mrun_environment
391	fi
392	if [[ $tmpcreate = true ]]
393	then
394	printf "\n *** Contents of \"$TEMPDIR\":\n"
395	ls -al; cd
396	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
397	fi
398	if [[ "$dvrserver_id" != "" ]]
399	then
400	echo "+++ killing dvrserver_id=$dvrserver_id"
401	kill $dvrserver_id
402	fi
403	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
404	then
405	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
406	fi
407	printf "\n\n+++ MRUN killed \n\n"
408	elif [[ $locat != control_c ]]
409	then
410	printf "\n\n --> all actions finished\n\n"
411	printf " Bye, bye $usern !!\n\n"
412	fi' exit
413
414
415	# BEI TERMINAL-BREAK:
416	trap 'rm -rf $working_directory/tmp_mrun
417	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
418	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
419	then
420	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
421	fi
422	if [[ "$dvrserver_id" != "" ]]
423	then
424	echo "+++ killing dvrserver_id=$dvrserver_id"
425	kill $dvrserver_id
426	fi
427	printf "\n+++ MRUN killed by \"^C\" \n\n"
428	locat=control_c
429	exit
430	' 2
431
432
433	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
434	# BEEN SET
435	if [[ "$PALM_BIN" = "" ]]
436	then
437	printf "\n +++ environment variable PALM_BIN has not been set"
438	printf "\n please set it to the directory where the PALM scripts are located"
439	locat=palm_bin; exit
440	fi
441	export PATH=$PALM_BIN:$PATH
442
443
444
445	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
446	# FUER FOLGEJOBS BENOETIGT WIRD
447	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:Op:P:q:r:R:s:St:T:u:U:vxX:yY: option
448	do
449	case $option in
450	(a) afname=$OPTARG;;
451	(A) store_on_archive_system=true; mc="$mc -A";;
452	(b) do_batch=true; mc="$mc -b";;
453	(B) delete_temporary_catalog=false; mc="$mc -B";;
454	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
455	(C) restart_run=true; mc="$mc -C";;
456	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
457	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
458	(F) job_on_file="-D"; mc="$mc -F";;
459	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
460	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
461	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
462	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
463	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
464	(I) ignore_archive_error=true; mc="$mc -I";;
465	(k) keep_data_from_previous_run=true; mc="$mc -k";;
466	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
467	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
468	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
469	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
470	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
471	(O) use_openmp=true; mc="$mc -O";;
472	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
473	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
474	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
475	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
476	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
477	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
478	(S) read_from_config=false; mc="$mc -S";;
479	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
480	(T) tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
481	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
482	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
483	(v) silent=true; mc="$mc -v";;
484	(x) do_trace=true;set -x; mc="$mc -x";;
485	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
486	(y) ocean_file_appendix=true; mc="$mc -y";;
487	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
488	(\?) printf "\n +++ unknown option $OPTARG \n"
489	printf "\n --> type \"$0 ?\" for available options \n"
490	locat=parameter;exit;;
491	esac
492	done
493
494
495	# EVTL. POSITIONSPARAMETER EINLESEN
496	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
497	shift OPTIND-1
498
499
500	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
501	if [[ "$1" = "?" ]]
502	then
503	(printf "\n *** mrun can be called as follows:\n"
504	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. <modus>\n"
505	printf "\n Description of available options:\n"
506	printf "\n Option Description Default-Value"
507	printf "\n -a base name of input files equiv. -d"
508	printf "\n -A archiving when using file-attribute fl"
509	printf "\n -b batch-job on local machine ---"
510	printf "\n -B do not delete temporary directory at end ---"
511	printf "\n -c configuration file .mrun.config"
512	printf "\n -d base name of files attached to program test"
513	printf "\n -D preprocessor(cpp)-directives \"\" "
514	printf "\n -F create remote job file only ---"
515	printf "\n -h execution host $localhost_realname"
516	printf "\n -i INPUT control list \"\" "
517	printf "\n -I archiving errors of previous batch-jobs"
518	printf "\n will be ignored"
519	printf "\n -k keep data from previous run"
520	printf "\n -K additional conditions for controling"
521	printf "\n usage of conditional code and"
522	printf "\n env-variables in configuration file \"\" "
523	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
524	printf "\n -M Makefile name Makefile"
525	printf "\n -n node usage (shared/not_shared) depending on -h"
526	printf "\n -o OUTPUT control list \"\" "
527	printf "\n -O use OpenMP ---"
528	printf "\n -p software package list \"\" "
529	printf "\n -q queue \"$queue\" "
530	printf "\n -r run control list (combines -i -o) \"\" "
531	printf "\n -s filenames of routines to be compiled \"\" "
532	printf "\n must end with .f, .f90, .F, or .c !"
533	printf "\n use \"..\" for more than one file and wildcards"
534	printf "\n -s TEST compiles all files with w-permit"
535	printf "\n -S config file interpreted by shellscript ---"
536	printf "\n -t allowed cpu-time in seconds (batch) 0"
537	printf "\n -T tasks per node depending on -h"
538	printf "\n -u username on remote machine \"\" "
539	printf "\n -v no prompt for confirmation ---"
540	printf "\n -x tracing of mrun for debug purposes ---"
541	printf "\n -X # of processors (on parallel machines) 1"
542	printf "\n -y add appendix \"_O\" to all local output"
543	printf "\n files (ocean precursor runs followed by"
544	printf "\n coupled atmosphere-ocean runs) ---"
545	printf "\n -Y run coupled model, \"#1 #2\" with"
546	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
547	printf "\n "
548	printf "\n Possible values of positional parameter <modus>:"
549	printf "\n \"?\" - this outline \n\n") \| more
550	exit
551	elif [[ "$1" != "" ]]
552	then
553	printf "\n +++ positional parameter $1 unknown \n"
554	locat=parameter; exit
555	fi
556
557
558
559	# KURZE STARTMELDUNG
560	printf "\n*** $version "
561	printf "\n will be executed. Please wait ..."
562
563
564
565	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
566	if [[ ! -f $config_file ]]
567	then
568	printf "\n\n +++ configuration file: "
569	printf "\n $config_file"
570	printf "\n does not exist"
571	locat=connect; exit
572	fi
573
574
575	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
576	line=""
577	grep "%host_identifier" $config_file > tmp_mrun
578	while read line
579	do
580	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
581	then
582	HOSTNAME=`echo $line \| cut -d" " -s -f2`
583	host_identifier=`echo $line \| cut -d" " -s -f3`
584	if [[ $localhost_realname = $HOSTNAME ]]
585	then
586	localhost=$host_identifier
587	break
588	fi
589	fi
590	done < tmp_mrun
591
592	if [[ "$localhost" = "" ]]
593	then
594	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
595	printf "\n for local host \"$localhost_realname\"."
596	printf "\n Please add line"
597	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
598	printf "\n to the configuration file."
599	locat=localhost; exit
600	fi
601
602
603	# HOSTSPEZIFISCHE VARIABLEN SETZEN
604	case $localhost_realname in
605	(r1\|r2\|h01\|b01) archive_system=tivoli;;
606	(cs*) archive_system=ut;;
607	(fimm.bccs.uib.no) fimm=true;;
608	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
609	(scirocco) scirocco=true;;
610	esac
611
612
613
614	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
615	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
616	[[ "$afname" = "" ]] && afname=$fname
617
618
619	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
620	if [[ "$run_mode" != "" ]]
621	then
622	input_list="$input_list $run_mode"
623	output_list="$output_list $run_mode"
624	fi
625
626
627	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
628	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
629	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
630	# STARTET)
631	if [[ "$fromhost" = "" ]]
632	then
633	fromhost=$localhost
634	fi
635
636
637	# PRUEFEN, OB MRUN NUR TESTWEISE AUF DER LOKALEN MASCHINE KOMPILIEREN SOLL
638	if [[ "$source_list" = LOCAL_COMPILE_TEST ]]
639	then
640	source_list=TEST
641	local_compile=true
642	host=$localhost
643	fi
644
645
646	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
647	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
648	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
649	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
650	if [[ -n $host && "$host" != $localhost ]]
651	then
652	do_batch=true
653	do_remote=true
654	case $host in
655	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|nech\|necriam\|lckyoto\|lcsgib\|lcsgih\|lctit\|unics\|lcxt4\|lcxt5m\|lck) true;;
656	(*) printf "\n"
657	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
658	printf "\n is not available"
659	locat=nqs; (( iec = 0 )); exit;;
660	esac
661	else
662	host=$localhost
663	fi
664
665
666	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
667	if [[ -n $additional_conditions ]]
668	then
669	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
670	cond1=`echo $additional_conditions \| cut -d" " -f1`
671	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
672	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
673	if [[ -n $dummy ]]
674	then
675	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
676	locat=options; exit
677	fi
678	block=_$cond1
679	[[ -n $cond2 ]] && block=${block}_$cond2
680	fi
681
682
683	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
684	if [[ $run_coupled_model = true ]]
685	then
686
687	if [[ -n $coupled_dist ]]
688	then
689
690	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
691	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
692
693	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
694	then
695
696	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
697	printf "\n PEs (total) : $numprocs"
698	printf "\n PEs (atmosphere): $numprocs_atmos"
699	printf "\n PEs (ocean) : $numprocs_ocean"
700	locat=coupling; exit
701
702	# REARRANGING BECAUSE CURRENTLY ONLY 1:1 TOPOLOGIES ARE SUPPORTED
703	# THIS SHOULD BE REMOVED IN FUTURE
704	elif (( $numprocs_ocean != $numprocs_atmos ))
705	then
706
707	printf "\n +++ currently only 1:1 topologies are supported"
708	printf "\n PEs (total) : $numprocs"
709	printf "\n PEs (atmosphere): $numprocs_atmos"
710	printf "\n PEs (ocean) : $numprocs_ocean"
711	(( numprocs_atmos = $numprocs / 2 ))
712	(( numprocs_ocean = $numprocs / 2 ))
713	printf "\n +++ rearranged topology to $numprocs_atmos:$numprocs_ocean"
714
715	fi
716
717	else
718
719	(( numprocs_ocean = $numprocs / 2 ))
720	(( numprocs_atmos = $numprocs / 2 ))
721
722	fi
723	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
724
725	# GET coupled_mode FROM THE CONFIG FILE
726	line=""
727	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
728	while read line
729	do
730	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && ( $(echo $line \| cut -d" " -s -f4) = $cond1 \|\| $(echo $line \| cut -d" " -s -f4) = $cond2 ) ]]
731	then
732	coupled_mode="mpi2"
733	fi
734	done < tmp_mrun
735
736	fi
737
738
739	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
740	# ARCHIVIERUNG FEHLGESCHLAGEN IST
741	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
742	then
743	if [[ $ignore_archive_error = false ]]
744	then
745	printf "\n +++ data archiving of previous run failed"
746	printf "\n see directory \~/job_queue on remote machine"
747	locat=archive; exit
748	else
749	printf "\n +++ warning: data archiving in a previous run failed"
750	printf "\n MRUN continues, trying to get backup copy"
751	fi
752	fi
753
754
755
756	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
757	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
758	if [[ "$read_from_config" = false ]]
759	then
760
761	[[ $silent = false ]] && printf "\n Reading the configuration file... "
762	while read zeile
763	do
764	[[ $silent = false ]] && printf "."
765
766
767	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
768	# ERSETZEN
769	eval zeile=\"$zeile\"
770
771
772	# INTERPRETATION DER ZEILE
773	if [[ "$(echo $zeile)" = "" ]]
774	then
775	# LEERZEILE, KEINE AKTION
776	continue
777
778	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
779	then
780
781	# ZEILE IST KOMMENTARZEILE
782	true
783
784	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
785	then
786
787	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
788	zeile=$(echo $zeile \| cut -c2-)
789	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
790	var=`echo $zeile \| cut -d" " -f1`
791	value=`echo $zeile \| cut -d" " -s -f2`
792	for_host=`echo $zeile \| cut -d" " -s -f3`
793	for_cond1=`echo $zeile \| cut -d" " -s -f4`
794	for_cond2=`echo $zeile \| cut -d" " -s -f5`
795
796	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
797	then
798
799	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
800	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
801	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
802
803
804	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
805	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
806	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
807	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
808	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
809	# KONFIGURATIONSDATEI
810	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
811	then
812	eval $var=\$value
813
814	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
815	if [[ $do_trace = true ]]
816	then
817	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
818	fi
819	fi
820
821	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
822	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
823	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
824	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
825	if [[ $var = host ]]
826	then
827	if [[ -n $host && "$host" != $localhost ]]
828	then
829	do_batch=true
830	do_remote=true
831	case $host in
832	(ibm\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|lctit\|nech\|necriam\|unics\|lcxt4\|lcxt5m\|lck) true;;
833	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
834	printf "\n is not available"
835	locat=nqs; exit;;
836	esac
837	else
838	host=$localhost
839	fi
840	fi
841
842	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
843	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
844	# DEN PROGRAMMEN BENOETIGT WERDEN
845	export $var
846	fi
847
848
849
850
851	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
852	then
853
854	# ZEILE DEFINIERT ERROR-KOMMANDO
855	(( iec = iec + 1 ))
856	zeile=$(echo $zeile \| cut -c4-)
857	err_command[$iec]="$zeile"
858
859	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
860	then
861
862	# ZEILE DEFINIERT INPUT-KOMMANDO
863	(( iic = iic + 1 ))
864	zeile=$(echo $zeile \| cut -c4-)
865	in_command[$iic]="$zeile"
866
867	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
868	then
869
870	# ZEILE DEFINIERT OUTPUT-KOMMANDO
871	(( ioc = ioc + 1 ))
872	zeile=$(echo $zeile \| cut -c4-)
873	out_command[$ioc]="$zeile"
874
875	else
876
877	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
878	# s2a: in/out - Feld
879	# s2b: loc - Feld (optional)
880	# s2c: tr/ar - Feld (optional)
881	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
882	s1=`echo $zeile \| cut -d" " -f1`
883	s2=`echo $zeile \| cut -d" " -s -f2`
884	s2a=$(echo $s2 \| cut -d":" -f1)
885	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
886	then
887	s2b=""
888	s2c=""
889	else
890	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
891	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
892	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
893	fi
894	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
895	s3=`echo $zeile \| cut -d" " -f3`
896	s4=`echo $zeile \| cut -d" " -s -f4`
897	s5=`echo $zeile \| cut -d" " -s -f5`
898	s6=`echo $zeile \| cut -d" " -s -f6`
899
900
901	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
902	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
903	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
904	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
905	# HANDEN SEIN MUSS (D.H. s2b = loc)
906	IFSALT="$IFS"; IFS="$IFS:"
907	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
908	then
909	found=false
910	for actual in $input_list
911	do
912	for formal in $s3
913	do
914	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
915	done
916	done
917	if [[ $found = true ]]
918	then
919	(( iin = iin + 1 ))
920	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
921	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
922	extin[$iin]=$s6
923	fi
924	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
925	then
926	found=false
927	for actual in $output_list
928	do
929	for formal in $s3
930	do
931	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
932	done
933	done
934	if [[ $found = true ]]
935	then
936	(( iout = iout + 1 ))
937	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
938	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
939	fi
940	elif [[ "$s2a" != in && "$s2a" != out ]]
941	then
942	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
943	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
944	locat=connect; exit
945	fi
946	IFS="$IFSALT"
947	fi
948	done < $config_file
949
950	else
951
952
953	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
954	[[ $silent = false ]] && printf "..."
955	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
956	export interpreted_config_file=.icf.$RANDOM
957
958
959
960	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
961	# VERFUEGUNG STELLEN
962	cat > .mrun_environment << %%END%%
963	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
964	config_file = '$config_file', do_remote = '$do_remote',
965	do_trace = '$do_trace', host = '$host',
966	input_list = '$input_list', icf = '$interpreted_config_file',
967	localhost = '$localhost', output_list = '$output_list' /
968
969	%%END%%
970
971	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
972	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
973	mrun_memory=$memory
974	mrun_group_number=$group_number
975	mrun_cpumax=$cpumax
976	mrun_numprocs=$numprocs
977
978	if [[ $localhost_realname = "sx-fep" ]]
979	then
980	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
981	else
982
983	if [[ "$host" != $localhost ]]
984	then
985
986	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
987	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
988	if [[ $? != 0 ]]
989	then
990	printf "\n\n +++ no interpret_config found"
991	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
992	locat=interpret_config; exit
993	fi
994	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
995	$interpret_config_executable
996
997	else
998
999	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
1000	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
1001	then
1002	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
1003	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
1004	locat=interpret_config; exit
1005	else
1006	interpret_config${block}.x
1007	fi
1008
1009	fi
1010	fi
1011	rm .mrun_environment
1012
1013
1014	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
1015	chmod u+x $interpreted_config_file
1016	export PATH=$PATH:.
1017	. $interpreted_config_file
1018	rm $interpreted_config_file
1019
1020
1021	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
1022	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
1023	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
1024	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
1025	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
1026
1027	fi
1028
1029
1030	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
1031	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
1032	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
1033	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
1034	if [[ "$SOURCES_COMPLETE" = "" ]]
1035	then
1036
1037	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
1038	# VEREINBART WURDE
1039	source_path=""
1040	line=""
1041	grep "%source_path" $config_file > tmp_mrun
1042	while read line
1043	do
1044	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1045	then
1046	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
1047	then
1048	global_source_path=`echo $line \| cut -d" " -f2`
1049	fi
1050	fi
1051	done < tmp_mrun
1052
1053	line=""
1054	found=false
1055	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
1056	while read line
1057	do
1058	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1059	then
1060	if [[ $found = true ]]
1061	then
1062	printf "\n\n +++ more than one source path found in configuration file"
1063	printf "\n for local host \"$localhost\" "
1064	locat=source_path; exit
1065	fi
1066	source_path=`echo $line \| cut -d" " -f2`
1067	found=true
1068	fi
1069	done < tmp_mrun
1070	rm tmp_mrun
1071
1072	if [[ "$source_path" = "" ]]
1073	then
1074	if [[ "$global_source_path" != "" ]]
1075	then
1076	source_path=$global_source_path
1077	else
1078	printf "\n\n +++ no source path found in configuration file"
1079	printf "\n for local host \"$localhost\" "
1080	locat=source_path; exit
1081	fi
1082	fi
1083	eval source_path=$source_path
1084
1085	if [[ ! -d $source_path ]]
1086	then
1087	printf "\n\n +++ source path \"$source_path\" on local host"
1088	printf "\n \"$localhost\" does not exist"
1089	locat=source_path; exit
1090	fi
1091
1092	fi
1093
1094
1095	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
1096	# DURCH OPTION -G MITGETEILT)
1097	if [[ "$global_revision" = "" ]]
1098	then
1099	global_revision=`svnversion $source_path 2>/dev/null`
1100	global_revision="Rev: $global_revision"
1101	fi
1102
1103
1104	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
1105	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
1106	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
1107	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
1108	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
1109	if [[ -n $host && "$host" != $localhost ]]
1110	then
1111	do_batch=true
1112	do_remote=true
1113	case $host in
1114	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|lctit\|nech\|necriam\|unics\|lcxt4\|lcxt5m\|lck) true;;
1115	(*) printf "\n"
1116	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
1117	printf "\n is not available"
1118	locat=nqs; (( iec = 0 )); exit;;
1119	esac
1120	else
1121	host=$localhost
1122	fi
1123
1124
1125	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
1126	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1127	then
1128
1129	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
1130	if [[ ! -n $numprocs ]]
1131	then
1132	printf "\n"
1133	printf "\n +++ option \"-K parallel\" requires additional specification"
1134	printf "\n of the number of processors to be used by"
1135	printf "\n mrun-option \"-X\" or by environment-variable"
1136	printf "\n \"numprocs\" in the configuration file"
1137	locat=numprocs; (( iec = 0 )); exit
1138	fi
1139
1140	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
1141	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
1142	# GESAMTPROZESSORANZAHL IST
1143	if [[ $host = nech \|\| $host = necriam \|\| $host = ibmh \|\| $host = ibmb \|\| $host = ibms ]]
1144	then
1145	[[ "$tasks_per_node" = "" ]] && tasks_per_node=6
1146	(( ival = $tasks_per_node ))
1147	(( pes = numprocs ))
1148	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1149	# then
1150	# (( pes = pes - 1 ))
1151	# fi
1152	(( ii = pes / ival ))
1153	if (( pes - ii * ival > 0 ))
1154	then
1155	printf "\n"
1156	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1157	printf "\n divisor of the total number of processors (option \"-X\")"
1158	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1159	locat=tasks_per_node; (( iec = 0 )); exit
1160	fi
1161	fi
1162
1163	# IBMY HAT NUR EINEN KNOTEN
1164	if [[ $host = ibmy ]]
1165	then
1166	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1167	then
1168	printf "\n"
1169	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1170	printf "\n total number of processors (option \"-X\")"
1171	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1172	locat=tasks_per_node; (( iec = 0 )); exit
1173	fi
1174	fi
1175
1176	# FALLS OPENMP PARALLELISIERUNG VERWENDET WERDEN SOLL, ANZAHL VON THREADS
1177	# SETZEN UND ZAHL DER TASKS PRO KNOTEN AUF 1 SETZEN
1178	if [[ $use_openmp = true ]]
1179	then
1180	threads_per_task=$tasks_per_node
1181	tasks_per_node=1
1182	fi
1183
1184	# SETTINGS FOR SUBJOB-COMMAND
1185	if [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1186	then
1187	(( tp1 = tasks_per_node * threads_per_task ))
1188	TOPT="-T $tp1"
1189	else
1190	TOPT="-T $tasks_per_node"
1191	fi
1192	OOPT="-O $threads_per_task"
1193
1194	# GESAMTZAHL DER KNOTEN BESTIMMEN
1195	if [[ "$tasks_per_node" != "" ]]
1196	then
1197	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1198	fi
1199
1200	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1201	# SETZEN
1202	if [[ $node_usage = default ]]
1203	then
1204	if [[ $host = ibms ]]
1205	then
1206	node_usage=shared
1207	elif [[ $host = lctit ]]
1208	then
1209	node_usage=RAM64GB
1210	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1211	then
1212	node_usage=singlejob
1213	else
1214	node_usage=not_shared
1215	fi
1216	fi
1217
1218	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != RAM64GB ]]
1219	then
1220	printf "\n"
1221	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1222	printf "\n \"shared\" or \"not_shared\""
1223	locat=tasks_per_node; (( iec = 0 )); exit
1224	fi
1225
1226	fi
1227
1228	# PRUEFEN, OB HOSTFILE EXISTIERT
1229	if [[ -n $hostfile ]]
1230	then
1231	if [[ ! -f $hostfile ]]
1232	then
1233	printf "\n"
1234	printf "\n +++ hostfile \"$hostfile\" does not exist"
1235	locat=hostfile; exit
1236	fi
1237	fi
1238
1239	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1240	if [[ $host = ibmy && $do_remote = false ]]
1241	then
1242	if [[ ! -f $HOME/.rhosts ]]
1243	then
1244	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1245	printf "\n\n *** file:"
1246	printf "\n $HOME/.rhosts"
1247	printf "\n was created\n"
1248	fi
1249	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1250	then
1251	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1252	printf "\n\n *** file:"
1253	printf "\n $HOME/.rhosts"
1254	printf "\n was extended by the name of the current host\n"
1255	fi
1256	fi
1257
1258
1259
1260	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1261	if [[ $queue = none ]]
1262	then
1263	case $host in
1264	(ibmb) if [[ $node_usage = shared ]]
1265	then
1266	queue=cshare
1267	else
1268	queue=csolo
1269	fi;;
1270	(ibmh) queue=no_class;;
1271	(ibmy) queue=parallel;;
1272	(lckyoto) queue=ph;;
1273	(lcsgib) queue=bigq;;
1274	(lcsgih) queue=bigq;;
1275	(lctit) queue=RAM64GB;;
1276	(nech) queue=none;;
1277	(necriam) queue=SP;;
1278	(unics) queue=unics;;
1279	esac
1280	fi
1281
1282
1283	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1284	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1285	# ERMITTELN
1286	(( i = 0 ))
1287	while (( i < iin ))
1288	do
1289	(( i = i + 1 ))
1290	(( maxcycle = 0 ))
1291
1292	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1293	if [[ "${actionin[$i]}" = di ]]
1294	then
1295	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1296	# REM-MASCHINE AUSWERTEN
1297	eval filename=${pathin[$i]}/${endin[$i]}
1298	else
1299	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1300	# REM-MASCHINE AUSWERTEN
1301	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1302	fi
1303
1304	# PRUEFEN AUF VORHANDENSEIN
1305	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1306	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1307	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1308	then
1309	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1310	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1311	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1312	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1313	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1314	if [[ "${transin[$i]}" != "locopt" ]]
1315	then
1316	printf "\n\n +++ INPUT-file: "
1317	if [[ "${extin[$i]}" = "" ]]
1318	then
1319	printf "\n $filename"
1320	else
1321	printf "\n $filename.${extin[$i]}"
1322	fi
1323	printf "\n does not exist\n"
1324	locat=input; exit
1325	else
1326	transin[$i]="unavailable"
1327	fi
1328	else
1329
1330	# ZYKLUSNUMMER FESTSTELLEN
1331	ls -1 -d $filename > filelist 2>/dev/null
1332	ls -1 -d $filename.* >> filelist 2>/dev/null
1333	while read zeile
1334	do
1335	cycle=$(print $zeile \| cut -f2 -d".")
1336	if [[ "$cycle" = "$zeile" ]]
1337	then
1338	(( icycle = 0 ))
1339	elif [[ "$cycle" = "${extin[$i]}" ]]
1340	then
1341	(( icycle = 0 ))
1342	else
1343	(( icycle = $cycle ))
1344	fi
1345	if (( icycle > maxcycle ))
1346	then
1347	(( maxcycle = icycle ))
1348	file_to_be_used=$zeile
1349	fi
1350	done <filelist
1351	rm filelist
1352
1353	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1354	if (( maxcycle > 0 ))
1355	then
1356	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1357	then
1358	filename=${filename}.$maxcycle.${extin[$i]}
1359	else
1360	filename=${filename}.$maxcycle
1361	fi
1362	else
1363	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1364	then
1365	filename=${filename}.${extin[$i]}
1366	fi
1367	fi
1368
1369	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1370	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1371	absnamein[$i]=$filename
1372	if (( maxcycle > 0 ))
1373	then
1374	if [[ "${actionin[$i]}" = di ]]
1375	then
1376	frelin[$i]=${endin[$i]}.$maxcycle
1377	else
1378	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1379	fi
1380	else
1381	if [[ "${actionin[$i]}" = di ]]
1382	then
1383	frelin[$i]=${endin[$i]}
1384	else
1385	frelin[$i]=${afname}${endin[$i]}
1386	fi
1387	fi
1388
1389	fi
1390	done
1391
1392
1393	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1394	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1395	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1396	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1397	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1398	(( i = 0 ))
1399	while (( i < iout ))
1400	do
1401	(( i = i + 1 ))
1402	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1403	then
1404	if [[ "${actionout[$i]}" = tr ]]
1405	then
1406	actionout[$i]=""
1407	elif [[ "${actionout[$i]}" = trpe ]]
1408	then
1409	actionout[$i]=pe
1410	elif [[ "${actionout[$i]}" = tra ]]
1411	then
1412	actionout[$i]=a
1413	fi
1414	(( maxcycle = 0 ))
1415	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1416	eval catalogname=${pathout[$i]}
1417	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1418	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1419	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1420	then
1421
1422	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1423	if cat /dev/null > $filename
1424	then
1425	rm $filename
1426	else
1427
1428	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1429	if [[ ! -d $catalogname ]]
1430	then
1431	if mkdir -p $catalogname
1432	then
1433	printf "\n\n *** directory:"
1434	printf "\n $catalogname"
1435	printf "\n was created\n"
1436	else
1437	printf "\n\n +++ OUTPUT-file:"
1438	printf "\n $filename"
1439	printf "\n cannot be created, because directory does not exist"
1440	printf "\n and cannot be created either"
1441	printf "\n"
1442	locat=output ; exit
1443	fi 2>/dev/null
1444	else
1445	printf "\n\n +++ OUTPUT-file:"
1446	printf "\n $filename"
1447	printf "\n cannot be created, although directory exists"
1448	printf "\n"
1449	locat=output ; exit
1450	fi
1451	fi 2>/dev/null
1452	else
1453
1454	# ZYKLUSNUMMER FESTSTELLEN
1455	ls -1 -d $filename > filelist 2>/dev/null
1456	ls -1 -d $filename.* >> filelist 2>/dev/null
1457	while read zeile
1458	do
1459	cycle=$(print $zeile \| cut -f2 -d".")
1460	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1461	then
1462	(( icycle = 1 ))
1463	else
1464	(( icycle = $cycle + 1 ))
1465	fi
1466	if (( icycle > maxcycle ))
1467	then
1468	(( maxcycle = icycle ))
1469	fi
1470	done <filelist
1471	rm filelist
1472	fi
1473
1474	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1475	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1476	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1477	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1478	if [[ "${actionout[$i]}" != a ]]
1479	then
1480	if (( maxcycle > 0 ))
1481	then
1482	filename=${filename}.$maxcycle
1483	if cat /dev/null > $filename
1484	then
1485	rm $filename
1486	else
1487	printf "\n +++ OUTPUT-file:"
1488	printf "\n $filename"
1489	printf "\n cannot be created"
1490	locat=output ; exit
1491	fi
1492	fi
1493	else
1494	(( maxcycle = maxcycle - 1 ))
1495	if (( maxcycle > 0 ))
1496	then
1497	filename=${filename}.$maxcycle
1498	fi
1499	fi
1500
1501	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1502	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1503	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1504	pathout[$i]=$filename
1505	if (( maxcycle > 0 ))
1506	then
1507	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1508	else
1509	frelout[$i]=${fname}${endout[$i]}
1510	fi
1511
1512	fi
1513	done
1514
1515
1516	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1517	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1518	then
1519	if [[ "$dvr_inc" = "" ]]
1520	then
1521	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1522	printf "\n This is required for the dvrp_graphics package.\n"
1523	locat=dvr; exit
1524	fi
1525	if [[ "$dvr_lib" = "" ]]
1526	then
1527	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1528	printf "\n This is required for the dvrp_graphics package.\n"
1529	locat=dvr; exit
1530	fi
1531	fi
1532
1533
1534	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1535	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1536	# UEBERSETZT ZU WERDEN)
1537	if [[ "$mainprog" = "" && "$executable" = "" ]]
1538	then
1539	printf "\n +++ neither main program nor executable defined"
1540	locat=source; exit
1541	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1542	then
1543	printf "\n +++ main program as well as executable defined"
1544	locat=source; exit
1545	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1546	then
1547	do_compile=false
1548	fi
1549
1550
1551	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1552	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1553	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1554	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1555	then
1556	rm -rf SOURCES_FOR_RUN_$fname
1557	mkdir SOURCES_FOR_RUN_$fname
1558	fi
1559
1560
1561	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1562	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1563	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1564	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1565	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1566	then
1567
1568	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1569	[[ "$source_list" = WP ]] && source_list=WRITE_PERMIT
1570
1571
1572	# EVTL. ZU UEBERSETZENDE PROGRAMMTEILE DADURCH BESTIMMEN, DASS GEPRUEFT
1573	# WIRD, WELCHE DATEIEN WRITE-PERMIT BESITZEN (DATEIEN SOLLTEN DESHALB
1574	# UNTER RCS-KONTROLLE STEHEN). MIT DER VARIABLEN EXCLUDE KOENNEN
1575	# BESTIMMTE DATEIEN GRUNDSAETZLICH VON DER UEBERSETZUNG AUSGESCHLOSSEN
1576	# WERDEN. DIES IST NUR BEI MANUELLEM START VON MRUN DURCH DEN BENUTZER
1577	# MOEGLICH, DA BEI AUTOMATISCHEN RESTARTS TEST DURCH DIE TATSAECHLICH
1578	# ZU UBERSETZENDEN DATEIEN ERSETZT IST.
1579	# ALLE ERMITTELTEN DATEIEN WERDEN IM VERZEICHNIS SOURCES_FOR_RUN_...
1580	# GESAMMELT
1581	if [[ "$source_list" = WRITE_PERMIT ]]
1582	then
1583
1584	source_list=""
1585	cd $source_path
1586
1587
1588	# ALLE MOEGLICHEN QUELLCODEDATEIEN AUFLISTEN
1589	Names=$(ls -1 *.f90 2>&1)
1590	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && Filenames="$Names"
1591	Names=$(ls -1 *.F90 2>&1)
1592	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && Filenames="$Filenames $Names"
1593	Names=$(ls -1 *.F 2>&1)
1594	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && Filenames="$Filenames $Names"
1595	Names=$(ls -1 *.f 2>&1)
1596	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && Filenames="$Filenames $Names"
1597	Names=$(ls -1 *.c 2>&1)
1598	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && Filenames="$Filenames $Names"
1599
1600
1601	# DATEIEN MIT WRITE-PERMIT NACH SOURCES_FOR_RUN_... KOPIEREN
1602	for dateiname in $Filenames
1603	do
1604	if [[ -w $dateiname ]]
1605	then
1606	if [[ "$exclude" = "" \|\| $(echo $exclude \| grep -c $dateiname) = 0 ]]
1607	then
1608	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1609	source_list=$source_list"$dateiname "
1610	fi
1611	fi
1612	done
1613
1614	cd - > /dev/null
1615
1616
1617	elif [[ "$source_list" = LOCALLY_MODIFIED ]]
1618	then
1619
1620	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1621	source_list=""
1622	cd $source_path
1623
1624
1625	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1626	if [[ ! -d .svn ]]
1627	then
1628	printf "\n\n +++ source directory"
1629	printf "\n \"$source_path\" "
1630	printf "\n is not under control of \"subversion\"."
1631	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1632	fi
1633
1634
1635	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1636	Filenames=""
1637	svn status > tmp_mrun
1638	while read line
1639	do
1640	firstc=`echo $line \| cut -c1`
1641	if [[ $firstc = M \|\| $firstc = "?" ]]
1642	then
1643	Name=`echo "$line" \| cut -c8-`
1644	extension=`echo $Name \| cut -d. -f2`
1645	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1646	then
1647	Filenames="$Filenames "$Name
1648	fi
1649	fi
1650	done < tmp_mrun
1651
1652
1653	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1654	for dateiname in $Filenames
1655	do
1656	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1657	source_list=$source_list"$dateiname "
1658	done
1659
1660	cd - > /dev/null
1661
1662
1663	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1664	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1665	# VORHANDEN
1666	elif [[ "$source_list" != "" && $restart_run != true ]]
1667	then
1668
1669	cd $source_path
1670
1671	for filename in $source_list
1672	do
1673
1674	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1675	if [[ $(print $filename \| grep -c "/") != 0 ]]
1676	then
1677	printf "\n +++ source code file: $filename"
1678	printf "\n must not contain (\"/\") "
1679	locat=source; exit
1680	fi
1681
1682	if [[ ! -f $filename ]]
1683	then
1684	printf "\n +++ source code file: $filename"
1685	printf "\n does not exist"
1686	locat=source; exit
1687	else
1688	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1689	fi
1690
1691	done
1692
1693	cd - > /dev/null
1694
1695	fi
1696
1697
1698	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1699	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1700	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1701	if [[ $restart_run != true ]]
1702	then
1703
1704	if [[ ! -f "$source_path/$mainprog" ]]
1705	then
1706	printf "\n\n +++ main program: $mainprog"
1707	printf "\n does not exist in source directory"
1708	printf "\n \"$source_path\"\n"
1709	locat=source; exit
1710	else
1711	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1712	then
1713	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1714	source_list=${mainprog}" $source_list"
1715	fi
1716	fi
1717	fi
1718
1719
1720	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1721	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1722	if [[ "$restart_run" != true ]]
1723	then
1724	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1725	if [[ ! -f $makefile ]]
1726	then
1727	printf "\n +++ file \"$makefile\" does not exist"
1728	locat=make; exit
1729	else
1730	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1731	fi
1732	fi
1733
1734
1735	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1736	if [[ $restart_run != true && "$add_source_path" != "" ]]
1737	then
1738
1739	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1740	if [[ ! -d $add_source_path ]]
1741	then
1742	printf "\n\n +++ WARNING: additional source code directory"
1743	printf "\n \"$add_source_path\" "
1744	printf "\n does not exist or is not a directory."
1745	printf "\n No source code will be used from this directory!\n"
1746	add_source_path=""
1747	sleep 3
1748	else
1749
1750	cd $add_source_path
1751	found=false
1752
1753	Names=$(ls -1 *.f90 2>&1)
1754	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1755	Names=$(ls -1 *.F90 2>&1)
1756	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1757	Names=$(ls -1 *.F 2>&1)
1758	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1759	Names=$(ls -1 *.f 2>&1)
1760	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1761	Names=$(ls -1 *.c 2>&1)
1762	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1763
1764	cd - > /dev/null
1765	cd SOURCES_FOR_RUN_$fname
1766
1767	# COPY MAKEFILE IF EXISTING
1768	if [[ -f $add_source_path/Makefile ]]
1769	then
1770	printf "\n\n *** user Makefile from directory"
1771	printf "\n \"$add_source_path\" is used \n"
1772	sleep 1
1773	cp $add_source_path/Makefile .
1774	fi
1775
1776	for dateiname in $AddFilenames
1777	do
1778	if [[ -f $dateiname ]]
1779	then
1780	printf "\n +++ source code file \"$dateiname\" found in additional"
1781	printf "\n source code directory \"$add_source_path\" "
1782	printf "\n but was also given with option \"-s\" which means that it should be taken"
1783	printf "\n from directory \"$source_path\"."
1784	locat=source; exit
1785	fi
1786
1787	cp $add_source_path/$dateiname .
1788	source_list="$source_list $dateiname"
1789
1790	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1791	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1792	then
1793	printf "\n\n +++ user file \"$dateiname\" "
1794	printf "\n is not listed in Makefile \n"
1795	locat=source; exit
1796	else
1797
1798	# Default User-Interface von der Liste entfernen, falls Datei
1799	# ein User-Interface enthaelt
1800	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1801	# then
1802	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1803	# then
1804	# rm -rf user_interface.f90
1805	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1806	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1807	# printf "\n since a user-interface is found in file"
1808	# printf "\n \"$add_source_path/$dateiname\" \n"
1809	# sleep 3
1810	# else
1811	if [[ $found = false ]]
1812	then
1813	found=true
1814	printf "\n\n *** following user file(s) added to the"
1815	printf " files to be translated:\n "
1816	fi
1817	printf "$dateiname "
1818	sleep 0.5
1819	fi
1820	done
1821	[[ $found = true ]] && printf "\n"
1822	cd - > /dev/null
1823	fi
1824	fi
1825
1826
1827	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1828	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1829	if [[ $restart_run != true && -n $package_list ]]
1830	then
1831
1832	cd $source_path
1833
1834	for package in $package_list
1835	do
1836
1837	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1838
1839	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1840	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1841	# LIEFERT
1842	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1843
1844
1845	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1846	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1847	for source_list_name in $package_source_list
1848	do
1849	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1850	then
1851
1852	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1853	ending=`echo $source_list_name \| cut -f2 -d.`
1854	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1855	then
1856	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1857	source_list="$source_list $source_list_name"
1858	fi
1859	fi
1860	done
1861	done
1862
1863	cd - > /dev/null
1864	fi
1865
1866
1867	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1868	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1869	# if [[ "$restart_run" != true ]]
1870	# then
1871	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1872	# if [[ ! -f $makefile ]]
1873	# then
1874	# printf "\n +++ file \"$makefile\" does not exist"
1875	# locat=make; exit
1876	# else
1877	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1878	# fi
1879	# fi
1880
1881	fi # do_compile=true
1882
1883
1884	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1885	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1886	if [[ $do_compile = true ]]
1887	then
1888
1889	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1890	# ZUSAMMENSETZEN
1891	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1892	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1893	then
1894	cpp_options="${cpp_options},-D__ibm=__ibm"
1895	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1896	then
1897	cpp_options="$cpp_options -D__nec"
1898	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1899	then
1900	cpp_options="$cpp_options -D__lc"
1901	else
1902	cpp_options="$cpp_options -D__$localhost"
1903	fi
1904
1905	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1906	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1907	then
1908	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1909	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1910	else
1911	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1912	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1913	fi
1914
1915	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1916	if [[ -n $package_list ]]
1917	then
1918	for package in $package_list
1919	do
1920	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1921	then
1922	if [[ $package != "dvrp_graphics+1PE" ]]
1923	then
1924	cpp_options="${cpp_options},-D__$package=__$package"
1925	else
1926	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1927	export use_seperate_pe_for_dvrp_output=true
1928	fi
1929	else
1930	if [[ $package != "dvrp_graphics+1PE" ]]
1931	then
1932	cpp_options="$cpp_options -D__$package"
1933	else
1934	cpp_options="$cpp_options -D__dvrp_graphics"
1935	export use_seperate_pe_for_dvrp_output=true
1936	fi
1937	fi
1938	done
1939	fi
1940
1941	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1942	if [[ -n $cpp_opts ]]
1943	then
1944	for popts in $cpp_opts
1945	do
1946	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1947	then
1948	cpp_options="${cpp_options},-D__$popts=__$popts"
1949	else
1950	cpp_options="$cpp_options -D__$popts"
1951	fi
1952	done
1953	fi
1954
1955	else
1956
1957
1958	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1959	if [[ $do_remote = false ]]
1960	then
1961	if [[ ! -f $executable ]]
1962	then
1963	printf "\n +++ executable file: $executable"
1964	printf "\n does not exist"
1965	locat=executable; exit
1966	fi
1967	fi
1968	fi
1969
1970
1971	# JOBMODUS FESTSTELLEN
1972	if [[ "$ENVIRONMENT" = BATCH && $localhost != lctit \|\| "$QUEUE" != interactive && $localhost = lctit ]]
1973	then
1974	jobmo=BATCH
1975	else
1976	jobmo=INTERACTIVE
1977	fi
1978
1979
1980	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1981	# DURCH BENUTZER ANDERWEITIG VEREINBART
1982	if [[ "$compiler_name" = "" ]]
1983	then
1984
1985	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
1986	locat=compiler_name; exit
1987
1988	fi
1989
1990
1991	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
1992	[[ $localhost = necriam ]] && compiler_name=mpif90
1993
1994
1995
1996	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
1997	kennung=$RANDOM
1998	if [[ "$tmp_user_catalog" = "" ]]
1999	then
2000	if [[ $localhost = ibmh ]]
2001	then
2002	tmp_user_catalog=$SCRATCH
2003	elif [[ $localhost = nech ]]
2004	then
2005	tmp_user_catalog=$WRKSHR
2006	else
2007	tmp_user_catalog=/tmp
2008	fi
2009	fi
2010	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
2011
2012
2013	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
2014	# BESTIMMEN
2015	if [[ "$tmp_data_catalog" = "" ]]
2016	then
2017	if [[ $localhost = ibmb ]]
2018	then
2019	tmp_data_catalog=$WORK/mrun_restart_data
2020	elif [[ $localhost = nech ]]
2021	then
2022	tmp_data_catalog=$WRKSHR/mrun_restart_data
2023	else
2024	tmp_data_catalog=/tmp/mrun_restart_data
2025	fi
2026	fi
2027
2028
2029	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
2030	# ERSETZEN
2031	if [[ $do_remote = false && $do_compile = true ]]
2032	then
2033	eval fopts=\"$fopts\"
2034	eval lopts=\"$lopts\"
2035	fi
2036
2037
2038
2039	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
2040	fopts="$fopts $netcdf_inc $dvr_inc"
2041	lopts="$lopts $netcdf_lib $dvr_lib"
2042	ROPTS="$ropts"
2043	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxt4 \|\| $host = lcxt5m \|\| $host = lck ) && -n $numprocs ]]
2044	then
2045	XOPT="-X $numprocs"
2046	fi
2047
2048
2049
2050	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
2051	# GRAMM BENOETIGT
2052	done=false
2053	while [[ $done = false ]]
2054	do
2055	cputime=$cpumax
2056	if (( $cputime == 0 ))
2057	then
2058	if [[ $do_batch = true ]]
2059	then
2060	printf "\n +++ cpu-time is undefined"
2061	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
2062	printf "\n >>> "
2063	read cputime 1>/dev/null 2>&1
2064	else
2065	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
2066	fi
2067	else
2068	done=true
2069	fi
2070	cpumax=$cputime
2071	done
2072
2073	(( minuten = cputime / 60 ))
2074	(( sekunden = cputime - minuten * 60 ))
2075
2076
2077	# PRUEFEN DER KERNSPEICHERANFORDERUNG
2078	if [[ $do_batch = true ]]
2079	then
2080	done=false
2081	while [[ $done = false ]]
2082	do
2083	if (( memory == 0 ))
2084	then
2085	printf "\n +++ memory demand is undefined"
2086	printf "\n >>> Please type memory in MByte per process as INTEGER:"
2087	printf "\n >>> "
2088	read memory 1>/dev/null 2>&1
2089	else
2090	done=true
2091	fi
2092	done
2093	fi
2094
2095
2096	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
2097	if [[ $do_remote = true && -z $remote_username ]]
2098	then
2099	while [[ -z $remote_username ]]
2100	do
2101	printf "\n +++ username on remote host \"$host\" is undefined"
2102	printf "\n >>> Please type username:"
2103	printf "\n >>> "
2104	read remote_username
2105	done
2106	mc="$mc -u$remote_username"
2107	fi
2108
2109
2110	# set module load command and export for subjob
2111	if [[ "$modules" != "" ]]
2112	then
2113	export module_calls="module load ${modules};"
2114	fi
2115
2116
2117	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
2118	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2119	then
2120	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
2121	then
2122	mpilib=mpt
2123	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
2124	then
2125	mpilib=mvapich
2126	fi
2127	fi
2128
2129
2130
2131	###########################################################################
2132	# HEADER-AUSGABE
2133	###########################################################################
2134
2135
2136	calltime=$(date)
2137	printf "\n"
2138	# [[ $silent = false ]] && clear
2139	printf "#--------------------------------------------------------------# \n"
2140	printf "\| $version$calltime \| \n"
2141	printf "\| \| \n"
2142	spalte1="called on:"; spalte2=$localhost_realname
2143	printf "\| $spalte1$spalte2 \| \n"
2144	if [[ $local_compile = false ]]
2145	then
2146	if [[ $do_remote = true ]]
2147	then
2148	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2149	else
2150	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2151	fi
2152	else
2153	spalte1="compiling test only!"; spalte2=""
2154	fi
2155	printf "\| $spalte1$spalte2 \| \n"
2156	if [[ -n $numprocs ]]
2157	then
2158	spalte1="number of PEs:"; spalte2=$numprocs
2159	printf "\| $spalte1$spalte2 \| \n"
2160	fi
2161	if [[ -n $tasks_per_node ]]
2162	then
2163	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2164	printf "\| $spalte1$spalte2 \| \n"
2165	fi
2166	if [[ $threads_per_task != 1 ]]
2167	then
2168	spalte1="threads per task:"; spalte2="$threads_per_task"
2169	printf "\| $spalte1$spalte2 \| \n"
2170	fi
2171	printf "\| \| \n"
2172	if [[ $do_compile = true ]]
2173	then
2174	if [[ "$mopts" != "" ]]
2175	then
2176	spalte1="make options:"; spalte2=$mopts
2177	printf "\| $spalte1$spalte2 \| \n"
2178	zeile=$(echo "$mopts" \| cut -c41-)
2179	while [[ "$zeile" != "" ]]
2180	do
2181	spalte1=""
2182	spalte2=$zeile
2183	printf "\| $spalte1$spalte2 \| \n"
2184	zeile=$(echo "$zeile" \| cut -c41-)
2185	done
2186	fi
2187
2188	spalte1="cpp directives:"; spalte2=$cpp_options
2189	printf "\| $spalte1$spalte2 \| \n"
2190	zeile=$(echo "$cpp_options" \| cut -c41-)
2191	while [[ "$zeile" != "" ]]
2192	do
2193	spalte1=""
2194	spalte2=$zeile
2195	printf "\| $spalte1$spalte2 \| \n"
2196	zeile=$(echo "$zeile" \| cut -c41-)
2197	done
2198
2199	spalte1="compiler options:"; spalte2="$fopts"
2200	printf "\| $spalte1$spalte2 \| \n"
2201	zeile=$(echo "$fopts" \| cut -c41-)
2202	while [[ "$zeile" != "" ]]
2203	do
2204	spalte1=""
2205	spalte2=$zeile
2206	printf "\| $spalte1$spalte2 \| \n"
2207	zeile=$(echo "$zeile" \| cut -c41-)
2208	done
2209
2210	spalte1="linker options:"; spalte2=$lopts
2211	printf "\| $spalte1$spalte2 \| \n"
2212	zeile=$(echo "$lopts" \| cut -c41-)
2213	while [[ "$zeile" != "" ]]
2214	do
2215	spalte1=""
2216	spalte2=$zeile
2217	printf "\| $spalte1$spalte2 \| \n"
2218	zeile=$(echo "$zeile" \| cut -c41-)
2219	done
2220
2221	spalte1="modules to be load:"; spalte2=$modules
2222	printf "\| $spalte1$spalte2 \| \n"
2223	zeile=$(echo "$modules" \| cut -c41-)
2224	while [[ "$zeile" != "" ]]
2225	do
2226	spalte1=""
2227	spalte2=$zeile
2228	printf "\| $spalte1$spalte2 \| \n"
2229	zeile=$(echo "$zeile" \| cut -c41-)
2230	done
2231
2232	spalte1="main program":; spalte2=$mainprog
2233	printf "\| $spalte1$spalte2 \| \n"
2234	else
2235	spalte1=executable:; spalte2=$executable
2236	printf "\| $spalte1$spalte2 \| \n"
2237	fi
2238	printf "\| \| \n"
2239	spalte1="base name of files":; spalte2=$fname
2240	printf "\| $spalte1$spalte2 \| \n"
2241	if [[ $fname != $afname ]]
2242	then
2243	spalte1="base name of input files":; spalte2=$afname
2244	printf "\| $spalte1$spalte2 \| \n"
2245	fi
2246	spalte1="INPUT control list":; spalte2=$input_list
2247	printf "\| $spalte1$spalte2 \| \n"
2248	spalte1="OUTPUT control list":; spalte2=$output_list
2249	printf "\| $spalte1$spalte2 \| \n"
2250
2251	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2252	then
2253	spalte1="memory demand / PE":; spalte2="$memory MB"
2254	printf "\| $spalte1$spalte2 \| \n"
2255	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2256	printf "\| $spalte1$spalte2 \| \n"
2257	fi
2258
2259	if [[ $do_compile = true ]]
2260	then
2261	printf "\| \| \n"
2262	printf "\| Files to be compiled: \| \n"
2263	zeile=$source_list
2264	while [[ "$zeile" != "" ]]
2265	do
2266	spalte3=$zeile
2267	printf "\| $spalte3 \| \n"
2268	zeile=$(echo "$zeile" \| cut -c61-)
2269	done
2270	fi
2271	printf "#--------------------------------------------------------------#"
2272
2273
2274
2275	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2276	if [[ $do_trace = true ]]
2277	then
2278	(( i = 0 ))
2279	while (( i < iin ))
2280	do
2281	(( i = i + 1 ))
2282	if (( i == 1 ))
2283	then
2284	printf "\n\n >>> INPUT-file assignments:\n"
2285	fi
2286	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2287	done
2288	(( i = 0 ))
2289	while (( i < iout ))
2290	do
2291	(( i = i + 1 ))
2292	if (( i == 1 ))
2293	then
2294	printf "\n\n >>> OUTPUT-file assignments:\n"
2295	fi
2296	printf "\n ${localout[$i]} : ${pathout[$i]}"
2297	done
2298	(( i = 0 ))
2299	while (( i < iic ))
2300	do
2301	(( i = i + 1 ))
2302	if (( i == 1 ))
2303	then
2304	printf "\n\n >>> INPUT-commands:\n"
2305	fi
2306	printf "\n ${in_command[$i]}"
2307	done
2308	(( i = 0 ))
2309	while (( i < ioc ))
2310	do
2311	(( i = i + 1 ))
2312	if (( i == 1 ))
2313	then
2314	printf "\n\n >>> OUTPUT-commands:\n"
2315	fi
2316	printf "\n ${out_command[$i]}"
2317	done
2318	fi
2319
2320
2321	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2322	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2323	then
2324	antwort=dummy
2325	printf "\n\n"
2326	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2327	do
2328	printf " >>> everything o.k. (y/n) ? "
2329	read antwort
2330	done
2331	if [[ $antwort = n \|\| $antwort = N ]]
2332	then
2333	locat=user_abort; (( iec = 0 )); exit
2334	fi
2335	if [[ $do_batch = true ]]
2336	then
2337	printf " >>> batch-job will be created and submitted"
2338	else
2339	if [[ $local_compile = false ]]
2340	then
2341	printf " >>> MRUN will now continue to execute on this machine"
2342	else
2343	printf " >>> a test compilation will now be carried out on this machine"
2344	fi
2345	fi
2346	fi
2347
2348
2349
2350
2351	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2352	# CHENDE AKTIONEN DURCHGEFUEHRT
2353	if [[ $do_batch = false ]]
2354	then
2355
2356
2357	# TEMPORAEREN KATALOG ERZEUGEN
2358	mkdir -p $TEMPDIR
2359	chmod go+rx $TEMPDIR
2360	tmpcreate=true
2361
2362	# set striping on lustre file system
2363	# if [[ $localhost = lcsgih ]]
2364	# then
2365	# lfs setstripe -s 8192k -c 16 $TEMPDIR
2366	# lfs getstripe $TEMPDIR
2367	# fi
2368
2369
2370	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2371	# TEMPORAERES VERZEICHNIS KOPIEREN
2372	if [[ $do_compile = true ]]
2373	then
2374
2375	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2376	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2377	if [[ $localhost = nech ]]
2378	then
2379	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2380	if mkdir -p $TEMPDIR_COMPILE
2381	then
2382	printf "\n *** \"$TEMPDIR_COMPILE\" "
2383	printf "\n is generated as temporary directory for cross compiling\n"
2384	else
2385	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2386	printf "\n needed for cross compilation failed"
2387	locat=compile
2388	exit
2389	fi
2390	else
2391	TEMPDIR_COMPILE=$TEMPDIR
2392	fi
2393
2394
2395	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2396	line=""
2397	grep "%depository_path" $config_file > tmp_mrun
2398	while read line
2399	do
2400	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2401	then
2402	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2403	then
2404	global_depository_path=`echo $line \| cut -d" " -s -f2`
2405	fi
2406	fi
2407	done < tmp_mrun
2408
2409	line=""
2410	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2411	while read line
2412	do
2413	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2414	then
2415	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2416	then
2417	local_depository_path=`echo $line \| cut -d" " -s -f2`
2418	fi
2419	fi
2420	done < tmp_mrun
2421
2422	if [[ "$local_depository_path" = "" ]]
2423	then
2424	if [[ "$global_depository_path" != "" ]]
2425	then
2426	local_depository_path=$global_depository_path
2427	else
2428	printf "\n\n +++ no depository path found in configuration file"
2429	printf "\n for local host \"$localhost\" "
2430	printf "\n please set \"\%depository_path\" in configuration file\n"
2431	locat=config_file; exit
2432	fi
2433	fi
2434	eval local_depository_path=$local_depository_path
2435	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2436	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2437
2438
2439	basename=`print $mainprog \| cut -f1 -d"."`
2440	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2441	if [[ ! -f $make_depository ]]
2442	then
2443	printf "\n"
2444	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2445	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2446	else
2447	cp $make_depository $TEMPDIR_COMPILE
2448	cd $TEMPDIR_COMPILE
2449	tar -xf $make_depository > /dev/null 2>&1
2450	cd - > /dev/null
2451	fi
2452
2453	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2454
2455	else
2456
2457	cp $executable ${TEMPDIR}/a.out
2458
2459	fi
2460
2461
2462	# WECHSEL IN TEMPORAEREN KATALOG
2463	cd $TEMPDIR
2464	printf "\n *** changed to temporary directory: $TEMPDIR"
2465
2466
2467	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2468	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2469	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2470	# ERMITTELN
2471	(( i = 0 ))
2472	while (( i < iout ))
2473	do
2474	(( i = i + 1 ))
2475	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2476	then
2477	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2478	else
2479	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2480	fi
2481	done
2482
2483
2484	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2485	if [[ $do_compile = true ]]
2486	then
2487
2488
2489	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2490	printf "\n\n\n *** compilation starts \n$striche\n"
2491	printf " *** compilation with make using following options:\n"
2492	printf " make depository: $make_depository"
2493	if [[ "$mopts" != "" ]]
2494	then
2495	printf " make options: $mopts\n"
2496	fi
2497	printf " compilername: $compiler_name\n"
2498	printf " compiler options: $fopts\n"
2499	printf " preprocessor directives: $cpp_options \n"
2500	printf " linker options: $lopts \n"
2501	if [[ "$modules" != "" ]]
2502	then
2503	printf " modules to be load: $modules \n"
2504	fi
2505	printf " source code files: $source_list \n"
2506
2507	if [[ $localhost = nech ]]
2508	then
2509	ssh 136.172.44.192 -l $usern ". /SX/opt/etc/initsx.sh; $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2510	cp $TEMPDIR_COMPILE/a.out .
2511	[[ $? != 0 ]] && compile_error=true
2512	rm -rf $TEMPDIR_COMPILE
2513	elif [[ $localhost = ibmh ]]
2514	then
2515	printf " compiler is called via ssh on \"plogin1\" \n"
2516	ssh plogin1 -l $usern "export PATH=/sw/ibm/xlf/12.1.0.3/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2517	[[ ! -f a.out ]] && compile_error=true
2518	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2519	elif [[ $localhost = lcsgib ]]
2520	then
2521	printf " compiler is called via ssh on \"bicegate\" \n"
2522	ssh 130.73.232.103 -l $usern ". /usr/share/modules/init/bash; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2523	[[ ! -f a.out ]] && compile_error=true
2524	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2525	elif [[ $localhost = lcsgih ]]
2526	then
2527	printf " compiler is called via ssh on \"hicegate2\" \n"
2528	ssh 130.75.4.103 -l $usern ". /usr/share/modules/init/bash; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2529	[[ ! -f a.out ]] && compile_error=true
2530	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2531	else
2532	[[ $localhost = lctit ]] && export LM_LICENSE_FILE=27050@tggls
2533	[[ "$module_calls" != "" ]] && eval $module_calls
2534	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2535	fi
2536
2537	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2538	then
2539	printf "\n +++ error occured while compiling or linking"
2540	locat=compile
2541
2542	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
2543	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
2544	# then
2545	exit
2546	# else
2547	# locat=normal
2548	# fi
2549	else
2550	printf "$striche\n *** compilation finished \n"
2551	fi
2552	fi
2553
2554
2555	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2556	if [[ $local_compile = true ]]
2557	then
2558	cd $HOME
2559	rm -rf $TEMPDIR
2560	locat=local_compile; exit
2561	fi
2562
2563
2564	# BEREITSTELLEN DER INPUT-DATEIEN
2565	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2566	(( i = 0 ))
2567	while (( i < iin ))
2568	do
2569	(( i = i + 1 ))
2570	if (( i == 1 ))
2571	then
2572	printf "\n\n *** providing INPUT-files:\n$striche"
2573	fi
2574
2575
2576	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2577	if [[ "${transin[$i]}" = unavailable ]]
2578	then
2579	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2580	then
2581	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2582	printf "\n is not available!"
2583	else
2584	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2585	printf "\n is not available!"
2586	fi
2587	continue
2588	fi
2589
2590	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2591	files_for_pes=false; datentyp=file
2592	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2593	then
2594	files_for_pes=true; datentyp=directory
2595	actionin[$i]=""
2596	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2597	then
2598	actionin[$i]=""
2599	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2600	then
2601	files_for_pes=true; datentyp=directory
2602	actionin[$i]="ar"
2603	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2604	then
2605	actionin[$i]="ar"
2606	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2607	then
2608	files_for_pes=true; datentyp=directory
2609	actionin[$i]="fl"
2610	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2611	then
2612	actionin[$i]="fl"
2613	fi
2614
2615	if [[ $files_for_pes = true ]]
2616	then
2617	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
2618	else
2619	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
2620	fi
2621
2622	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
2623	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
2624	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
2625	# SERVER ZU HOLEN
2626	if [[ "${actionin[$i]}" = fl ]]
2627	then
2628	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
2629	if [[ $files_for_pes = false ]]
2630	then
2631	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
2632	then
2633	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
2634	got_tmp[$i]=true
2635	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2636	then
2637	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2638	printf "\n *** trying to use backup copy in \"$WORK\" "
2639	cp $WORK/${frelin[$i]} ${localin[$i]}
2640	else
2641	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2642	printf "\n or \"$tmp_data_catalog\" does not exist!"
2643	printf "\n *** trying to get copy from archive"
2644	actionin[$i]=ar
2645	fi
2646	else
2647	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
2648	then
2649	mkdir ${localin[$i]}
2650	cd $tmp_data_catalog/${frelin[$i]}
2651	for file in $(ls *)
2652	do
2653	ln $file $TEMPDIR/${localin[$i]}
2654	done
2655	cd $TEMPDIR
2656	got_tmp[$i]=true
2657	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2658	then
2659	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2660	printf "\n *** trying to use backup copy in \"$WORK\" "
2661	cp -r $WORK/${frelin[$i]} ${localin[$i]}
2662	else
2663	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2664	printf "\n or \"$tmp_data_catalog\" does not exist!"
2665	printf "\n *** trying to get copy from archive"
2666	actionin[$i]=ar
2667	fi
2668	fi
2669	fi
2670
2671
2672	# DATEI LIEGT AUF ARCHIV-SERVER
2673	if [[ "${actionin[$i]}" = ar ]]
2674	then
2675
2676	if [[ $files_for_pes = false ]]
2677	then
2678	printf "\n file will be restored from archive-system ($archive_system)!"
2679	else
2680	printf "\n directory will be restored from archive-system ($archive_system)!"
2681	fi
2682
2683	file_restored=false
2684
2685	if [[ $archive_system = asterix ]]
2686	then
2687	do_stagein=true
2688	(( stagein_anz = 0 ))
2689	while [[ $do_stagein = true ]]
2690	do
2691	if [[ $files_for_pes = false ]]
2692	then
2693	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
2694	else
2695	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
2696	fi
2697	cat STAGEIN_OUTPUT
2698	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
2699	then
2700	file_restored=true
2701	do_stagein=false
2702	else
2703	(( stagein_anz = stagein_anz + 1 ))
2704	if (( stagein_anz == 10 ))
2705	then
2706	printf "\n +++ stagein stoped after 10 tries"
2707	locat=stage
2708	exit
2709	fi
2710	printf "\n +++ restoring from archive failed, trying again:"
2711	sleep 900
2712	fi
2713	done
2714	elif [[ $archive_system = DMF ]]
2715	then
2716	if [[ $files_for_pes = false ]]
2717	then
2718	printf "\n +++ restoring of single files impossible with $archive_system !\n"
2719	locat=DMF
2720	exit
2721	else
2722	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
2723	cp -r $ARCHIVE/${frelin[$i]} $PWD
2724	file_restored=true
2725	fi
2726	elif [[ $archive_system = tivoli ]]
2727	then
2728	if [[ $files_for_pes = false ]]
2729	then
2730	if [[ $localhost = lcsgih ]]
2731	then
2732	ssh $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2733	else
2734	ssh $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2735	fi
2736	else
2737	(( inode = 0 ))
2738	while (( inode < nodes ))
2739	do
2740	if [[ $localhost = lcsgih ]]
2741	then
2742	ssh $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2743	else
2744	ssh $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2745	fi
2746	(( inode = inode + 1 ))
2747	done
2748	fi
2749	file_restored=true
2750	elif [[ $archive_system = ut ]]
2751	then
2752	if [[ $files_for_pes = false ]]
2753	then
2754	cp $UT/${frelin[$i]} .
2755	else
2756	(( inode = 0 ))
2757	while (( inode < nodes ))
2758	do
2759	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
2760	(( inode = inode + 1 ))
2761	done
2762	fi
2763	file_restored=true
2764	else
2765	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
2766	locat=rearchive
2767	exit
2768	fi
2769
2770	if [[ $file_restored = true ]]
2771	then
2772
2773	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
2774	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
2775	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
2776	if [[ $files_for_pes = false ]]
2777	then
2778	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
2779	else
2780	mkdir $tmp_data_catalog/${frelin[$i]}
2781	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
2782	fi
2783	got_tmp[$i]=true
2784
2785	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
2786	mv ${frelin[$i]} ${localin[$i]}
2787
2788	fi
2789	fi
2790
2791
2792	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
2793	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
2794	then
2795
2796	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
2797	then
2798
2799	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
2800	printf "\n file will be provided for $numprocs processors"
2801	mkdir ${localin[$i]}
2802	ival=$numprocs
2803	(( ii = 0 ))
2804	while (( ii <= ival-1 ))
2805	do
2806	if (( ii < 10 ))
2807	then
2808	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
2809	elif (( ii < 100 ))
2810	then
2811	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
2812	elif (( ii < 1000 ))
2813	then
2814	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
2815	else
2816	cp ${absnamein[$i]} ${localin[$i]}/_$ii
2817	fi
2818	(( ii = ii + 1 ))
2819	done
2820
2821	else
2822
2823	if [[ $files_for_pes = true ]]
2824	then
2825
2826	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
2827	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
2828	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
2829	# PER MOVE UMBENANNT WERDEN
2830	printf "\n providing $numprocs files for the respective processors"
2831	mkdir ${localin[$i]}
2832	if [[ $link_local_input = true ]]
2833	then
2834	printf " using ln -f\n"
2835	cd ${absnamein[$i]}
2836	for file in $(ls *)
2837	do
2838	ln -f $file ${localin[$i]}
2839	done
2840	cd $TEMPDIR
2841	fi
2842	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
2843	if [[ ! -f "${localin[$i]}/_0000" ]]
2844	then
2845	if [[ $link_local_input = true ]]
2846	then
2847	printf " ln failed for .../_0000, using cp...\n"
2848	fi
2849	cp -r ${absnamein[$i]}/* ${localin[$i]}
2850	fi
2851
2852	else
2853	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
2854	if [[ $link_local_input = true ]]
2855	then
2856	printf " using ln -f\n"
2857	ln -f ${absnamein[$i]} ${localin[$i]}
2858	fi
2859	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
2860	if [[ ! -f "${localin[$i]}" ]]
2861	then
2862	if [[ $link_local_input = true ]]
2863	then
2864	printf " ln failed, using cp...\n"
2865	fi
2866	cp ${absnamein[$i]} ${localin[$i]}
2867	fi
2868	fi
2869	fi
2870	fi
2871
2872	done
2873	if (( i != 0 ))
2874	then
2875	printf "\n$striche\n *** all INPUT-files provided \n"
2876	fi
2877
2878
2879	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
2880	(( i = 0 ))
2881	while (( i < iic ))
2882	do
2883	(( i = i + 1 ))
2884	if (( i == 1 ))
2885	then
2886	printf "\n\n *** execution of INPUT-commands:\n$striche"
2887	fi
2888	printf "\n >>> ${in_command[$i]}"
2889	eval ${in_command[$i]}
2890	if (( i == iic ))
2891	then
2892	printf "\n$striche\n"
2893	fi
2894	done
2895
2896
2897	# VERBLEIBENDE CPU-ZEIT BERECHNEN
2898	cpurest=${cpumax}.
2899
2900
2901	# START DVR STREAMING SERVER
2902	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
2903	then
2904	if [[ "$dvr_server" != "" ]]
2905	then
2906
2907	printf "\n\n *** preparing the dvr streaming server configuration file"
2908
2909	# Check, if a dvr server is already running
2910	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
2911	if [[ "$running_dvrserver_id" != "" ]]
2912	then
2913
2914	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
2915	printf "\n This server is used instead starting a new one!"
2916	printf "\n If required, script \"process_dvr_output\" has to be run manually."
2917
2918	else
2919
2920	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
2921	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
2922	then
2923	cp ${PALM_BIN}/.dvrserver.config .
2924
2925	# Entering the BASEDIR, UID and GID into this file
2926	user_id=`id -u`
2927	group_id=`id -g`
2928	# & is needed as seperator, because TEMPDIR contains /
2929	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
2930	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
2931	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
2932	mv .dvrserver.3 .dvrserver.config
2933	rm .dvrserver.1 .dvrserver.2
2934
2935	# Start dvr server in background, get his id and print on terminal
2936	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
2937	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
2938	printf "\n *** streaming server with id=$dvrserver_id is started in background"
2939	local_dvrserver_running=.TRUE.
2940	else
2941	printf "\n +++ missing file \".dvrserver.config\" in directory:"
2942	printf "\n \"$PALM_BIN\" "
2943	locat=dvr
2944	exit
2945	fi
2946
2947	fi
2948
2949	else
2950	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
2951	fi
2952	fi
2953
2954
2955	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
2956	# LESEN VON PALM)
2957	cat > ENVPAR << %%END%%
2958	&envpar run_identifier = '$fname', host = '$localhost',
2959	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2960	maximum_cpu_time_allowed = ${cpumax}.,
2961	revision = '$global_revision',
2962	local_dvrserver_running = $local_dvrserver_running /
2963
2964	%%END%%
2965
2966
2967	# PROGRAMMSTART
2968	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
2969	PATH=$PATH:$TEMPDIR
2970
2971	# MPI debug option (argument checking, slows down execution due to increased latency)
2972	if [[ "$mpi_debug" = true ]]
2973	then
2974	export MPI_CHECK_ARGS=1
2975	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
2976	fi
2977
2978	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
2979	then
2980	if [[ "$ENVIRONMENT" = BATCH ]]
2981	then
2982	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
2983	then
2984	printf "\n +++ debug is allowed in interactive mode only"
2985	locat=debug
2986	exit
2987	fi
2988	fi
2989	if [[ $localhost = decalpha ]]
2990	then
2991	dxladebug a.out
2992	elif [[ $localhost = ibmb \|\| $localhost = ibmh ]]
2993	then
2994
2995	# SETUP THE IBM MPI ENVIRONMENT
2996	export MP_SHARED_MEMORY=yes
2997	export AIXTHREADS_SCOPE=S
2998	export OMP_NUM_THREADS=$threads_per_task
2999	export AUTHSTATE=files
3000	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3001
3002	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
3003	export MP_ADAPTER_USE=shared
3004	export MP_CPU_USE=multiple
3005	export MP_TIMEOUT=1200
3006
3007	unset MP_TASK_AFFINITY
3008
3009	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
3010	#(( ii = 1 ))
3011	#while (( ii <= $numprocs ))
3012	#do
3013	# echo $localhost_realname >> hostfile
3014	# (( ii = ii + 1 ))
3015	#done
3016	#export MP_HOSTFILE=hostfile
3017
3018	if [[ "$LOADLBATCH" = yes ]]
3019	then
3020	totalview poe a.out $ROPTS
3021	else
3022	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3023	export TVDSVRLAUNCHCMD=ssh
3024	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3025	fi
3026	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
3027	then
3028	# CURRENTLY NO DEBUGGER ON LCSGI
3029	if [[ $run_coupled_model = true ]]
3030	then
3031	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
3032	locat=debug
3033	exit
3034	else
3035	echo "no_coupling" > runfile_atmos
3036	fi
3037	(( ii = $numprocs / $threads_per_task ))
3038	export OMP_NUM_THREADS=$threads_per_task
3039	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3040	if [[ $threads_per_task != 1 ]]
3041	then
3042	printf "\n threads per task: $threads_per_task"
3043	fi
3044	printf "\n\n"
3045	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3046	then
3047	# export MPI_LAUNCH_TIMEOUT=360
3048	if [[ "$totalview" = true ]]
3049	then
3050	printf "\n running totalview debugger"
3051	mpiexec_mpt -tv -n $ii ./a.out $ROPTS < runfile_atmos
3052	else
3053	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3054	fi
3055	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3056	then
3057	# ulimit -s 300000 # A too large stack size causes problems
3058	# export MV2_NUM_PORTS=2
3059	# export MV2_CPU_MAPPING=0:1:2:3
3060	if [[ "$totalview" = true ]]
3061	then
3062	printf "\n running totalview debugger"
3063	mpiexec -tv ./a.out $ROPTS < runfile_atmos
3064	else
3065	mpiexec ./a.out $ROPTS < runfile_atmos
3066	fi
3067	fi
3068	else
3069	printf "\n +++ no debug available on \"$localhost\" "
3070	printf "\n or not implemented in mrun so far"
3071	locat=debug
3072	exit
3073	fi
3074	else
3075	if [[ -n $numprocs ]]
3076	then
3077	# RUNNING THE PROGRAM ON PARALLEL MACHINES
3078	if [[ $(echo $host \| cut -c1-3) = ibm ]]
3079	then
3080	# SETUP THE IBM MPI ENVIRONMENT
3081	if [[ $host != ibmh ]]
3082	then
3083	export MP_SHARED_MEMORY=yes
3084	export AIXTHREAD_SCOPE=S
3085	export OMP_NUM_THREADS=$threads_per_task
3086	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
3087	export AUTHSTATE=files
3088	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3089	# export MP_PRINTENV=yes
3090
3091	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3092	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3093	export MP_WAIT_MODE=poll
3094	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3095	fi
3096	if [[ "$LOADLBATCH" = yes ]]
3097	then
3098	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3099	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3100	then
3101	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3102	else
3103	if [[ $run_coupled_model = false ]]
3104	then
3105	if [[ "$ocean_file_appendix" = true ]]
3106	then
3107	echo "precursor_ocean" > runfile_atmos
3108	else
3109	echo "precursor_atmos" > runfile_atmos
3110	fi
3111	else
3112	(( iia = $numprocs_atmos / $threads_per_task ))
3113	(( iio = $numprocs_ocean / $threads_per_task ))
3114	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3115	printf "\n using $coupled_mode coupling"
3116	printf "\n\n"
3117	echo "coupled_run $iia $iio" > runfile_atmos
3118	fi
3119	poe ./a.out $ROPTS < runfile_atmos
3120	fi
3121	else
3122	if [[ $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms ]]
3123	then
3124	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3125	elif [[ $localhost = ibmy ]]
3126	then
3127	if [[ -f $hostfile ]]
3128	then
3129	cp $hostfile hostfile
3130	else
3131	(( ii = 1 ))
3132	while (( ii <= $numprocs ))
3133	do
3134	echo $localhost_realname >> hostfile
3135	(( ii = ii + 1 ))
3136	done
3137	fi
3138	export MP_HOSTFILE=hostfile
3139	if [[ $run_coupled_model = false ]]
3140	then
3141	if [[ "$ocean_file_appendix" = true ]]
3142	then
3143	echo "precursor_ocean" > runfile_atmos
3144	else
3145	echo "precursor_atmos" > runfile_atmos
3146	fi
3147	else
3148	(( iia = $numprocs_atmos / $threads_per_task ))
3149	(( iio = $numprocs_ocean / $threads_per_task ))
3150	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3151	printf "\n using $coupled_mode coupling"
3152	printf "\n\n"
3153	echo "coupled_run $iia $iio" > runfile_atmos
3154	fi
3155	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3156
3157	else
3158	if [[ "$host_file" = "" ]]
3159	then
3160	printf "\n +++ no hostfile given in configuration file"
3161	locat=config_file
3162	exit
3163	else
3164	eval host_file=$host_file
3165	fi
3166	export MP_HOSTFILE=$host_file
3167	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3168	fi
3169	fi
3170	elif [[ $host = nech \|\| $host = necriam ]]
3171	then
3172	(( ii = nodes ))
3173	if [[ $ii = 1 ]]
3174	then
3175	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3176	export MPIPROGINF=YES
3177	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3178	echo "*** execution on single node with mpirun"
3179	mpirun -np $numprocs ./a.out $ROPTS
3180	else
3181	(( i = 0 ))
3182	while (( i < ii ))
3183	do
3184	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3185	(( i = i + 1 ))
3186	done
3187
3188	echo "#!/bin/sh" > mpi_exec_shell
3189	echo " " >> mpi_exec_shell
3190	echo "set -u" >> mpi_exec_shell
3191	echo "F_ERRCNT=0" >> mpi_exec_shell
3192	echo "MPIPROGINV=YES" >> mpi_exec_shell
3193	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3194	echo "cpurest=$cpurest" >> mpi_exec_shell
3195	echo "fname=$fname" >> mpi_exec_shell
3196	echo "localhost=$localhost" >> mpi_exec_shell
3197	echo "return_addres=$return_addres" >> mpi_exec_shell
3198	echo "return_username=$return_username" >> mpi_exec_shell
3199	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3200	echo "write_binary=$write_binary" >> mpi_exec_shell
3201	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3202	echo " " >> mpi_exec_shell
3203	echo "export F_ERRCNT" >> mpi_exec_shell
3204	echo "export MPIPROGINV" >> mpi_exec_shell
3205	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3206	echo "export cpurest" >> mpi_exec_shell
3207	echo "export fname" >> mpi_exec_shell
3208	echo "export localhost" >> mpi_exec_shell
3209	echo "export return_addres" >> mpi_exec_shell
3210	echo "export return_username" >> mpi_exec_shell
3211	echo "export tasks_per_node" >> mpi_exec_shell
3212	echo "export write_binary" >> mpi_exec_shell
3213	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3214	echo " " >> mpi_exec_shell
3215	echo "exec ./a.out" >> mpi_exec_shell
3216
3217	chmod u+x mpi_exec_shell
3218	export MPIPROGINF=YES
3219	mpirun -f multinode_config &
3220	wait
3221
3222	fi
3223	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
3224	then
3225
3226	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3227	# DOES NOT EXIST
3228	if [[ $host != lcsgih && $host != lcsgib ]]
3229	then
3230	if [[ -f $hostfile ]]
3231	then
3232	cp $hostfile hostfile
3233	else
3234	(( ii = 1 ))
3235	while (( ii <= $numprocs / $threads_per_task ))
3236	do
3237	echo $localhost_realname >> hostfile
3238	(( ii = ii + 1 ))
3239	done
3240	fi
3241	eval zeile=\"`head -n $ii hostfile`\"
3242	printf "\n *** running on: $zeile"
3243	fi
3244
3245	(( ii = $numprocs / $threads_per_task ))
3246	export OMP_NUM_THREADS=$threads_per_task
3247	# echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3248	if [[ $threads_per_task != 1 ]]
3249	then
3250	# increase stack size to unlimited, because large runs
3251	# may abort otherwise
3252	ulimit -Ss unlimited
3253	printf "\n threads per task: $threads_per_task stacksize: unlimited"
3254	fi
3255	if [[ $run_coupled_model = false ]]
3256	then
3257	if [[ "$ocean_file_appendix" = true ]]
3258	then
3259	echo "precursor_ocean" > runfile_atmos
3260	else
3261	echo "precursor_atmos" > runfile_atmos
3262	fi
3263	printf "\n\n"
3264	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3265	then
3266	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3267	then
3268	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3269	# export MPI_DSM_DISTRIBUTE=1
3270	# MPI_DSM_CPULIST: pin MPI processes to cores
3271	if [[ $use_openmp = false ]]
3272	then
3273	if [[ "$sgi_feature" = ice2 ]]
3274	then
3275	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
3276	else
3277	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3278	fi
3279	fi
3280	# MPI_IB_RAILS: use both IB rails on ICE2
3281	export MPI_BUFS_PER_HOST=512
3282	export MPI_IB_RAILS=2
3283	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3284	export MPI_CONNECTIONS_THRESHOLD=8192
3285	echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
3286	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3287
3288	# next is test for openmp usage
3289	# mpiexec -n $ii -pernode ./a.out $ROPTS < runfile_atmos
3290	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3291	then
3292	export MV2_NUM_PORTS=2
3293	# The default setting of MV2_CPU_MAPPING gives best results
3294	# export MV2_ENABLE_AFFINITY=1
3295	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3296	# if [[ "$sgi_feature" = ice2 ]]
3297	# then
3298	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
3299	# else
3300	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3301	# fi
3302	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
3303	if [[ $threads_per_task != 1 ]]
3304	then
3305	mpiexec -npernode 1 ./a.out $ROPTS < runfile_atmos
3306	else
3307	mpiexec -np $ii ./a.out $ROPTS < runfile_atmos
3308	fi
3309	fi
3310	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3311	then
3312	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3313	else
3314	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3315	fi
3316	else
3317
3318	# currently there is no full MPI-2 support on ICE and XT4
3319	(( iia = $numprocs_atmos / $threads_per_task ))
3320	(( iio = $numprocs_ocean / $threads_per_task ))
3321	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3322	printf "\n using $coupled_mode coupling"
3323	printf "\n\n"
3324
3325	if [[ $coupled_mode = "mpi2" ]]
3326	then
3327	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3328	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3329	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3330	then
3331
3332	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3333	then
3334	# export MPI_LAUNCH_TIMEOUT=360
3335	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3336	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3337	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3338	then
3339	# ulimit -s 300000 # A too large stack size causes problems
3340	# export MV2_NUM_PORTS=2
3341	# export MV2_CPU_MAPPING=0:1:2:3
3342	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3343	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3344	fi
3345
3346	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3347	then
3348
3349	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3350	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3351
3352	else
3353	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3354	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3355	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3356	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3357	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3358	fi
3359	wait
3360
3361	else
3362
3363	echo "coupled_run $iia $iio" > runfile_atmos
3364	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3365	then
3366
3367	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3368	then
3369	# export MPI_LAUNCH_TIMEOUT=360
3370	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3371	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3372	then
3373	# ulimit -s 300000 # A too large stack size causes problems
3374	# export MV2_NUM_PORTS=2
3375	# export MV2_CPU_MAPPING=0:1:2:3
3376	mpiexec ./a.out $ROPTS < runfile_atmos
3377	fi
3378
3379	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3380	then
3381
3382	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3383
3384	elif [[ $host = lck ]]
3385	then
3386	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3387	fi
3388	wait
3389	fi
3390
3391	fi
3392	elif [[ $host = decalpha ]]
3393	then
3394	dmpirun -np $numprocs a.out $ROPTS
3395	elif [[ $host = lckyoto ]]
3396	then
3397	set -xv
3398	export P4_RSHCOMMAND=plesh
3399	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
3400	if [[ "$ENVIRONMENT" = BATCH ]]
3401	then
3402	if [[ "$cond2" = fujitsu ]]
3403	then
3404	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
3405	elif [[ "cond2" = pgi ]]
3406	then
3407	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
3408	else
3409	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
3410	fi
3411	else
3412	if [[ "$cond2" = "" ]]
3413	then
3414	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
3415	else
3416	mpirun -np $numprocs ./a.out $ROPTS
3417	fi
3418	fi
3419	set +xv
3420	elif [[ $host = lctit ]]
3421	then
3422	export runfile=runfile.$kennung
3423
3424	echo "cd $PWD" > $runfile
3425	echo "export OMP_NUM_THREADS=$OMP_NUM_THREADS" >> $runfile
3426	echo "export cpurest=$cpurest" >> $runfile
3427	echo "export fname=$fname" >> $runfile
3428	echo "export localhost=$localhost" >> $runfile
3429	echo "export return_addres=$return_addres" >> $runfile
3430	echo "export return_username=$return_username" >> $runfile
3431	echo "export tasks_per_node=$tasks_per_node" >> $runfile
3432	echo "export write_binary=$write_binary" >> $runfile
3433	echo "export use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> $runfile
3434	echo "./a.out" >> $runfile
3435	chmod u+x $runfile
3436
3437	if [[ "$QUEUE" = interactive ]]
3438	then
3439	mpirun -np $numprocs a.out $ROPTS
3440	else
3441	(( mem_tsubame = $memory / 1024.0 ))
3442	echo "Memory for Tsubame for each process in GB:", $mem_tsubame
3443	# n1ge -fore -g 1S060156 -mpi $numprocs -mem 4 -N palm -q $queue a.out $ROPTS
3444	# /n1ge/TITECH_GRID/tools/bin/n1ge -fore -g $group_number -mpi ${numprocs}:$tasks_per_node -mem $mem_tsubame -N palm -rt $minuten -q $queue a.out $ROPTS
3445	n1ge -fore -g $group_number -mpi ${numprocs}:$tasks_per_node -mem $mem_tsubame -N palm -rt $minuten -q $queue a.out $ROPTS
3446	fi
3447
3448	rm $runfile
3449	else
3450	mpprun -n $numprocs a.out $ROPTS
3451	fi
3452	[[ $? != 0 ]] && execution_error=true
3453
3454
3455	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3456	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3457	then
3458	apprentice
3459	fi
3460	else
3461	a.out $ROPTS
3462	fi
3463	fi
3464	if [[ $? != 0 \|\| $execution_error = true ]]
3465	then
3466
3467	# ABBRUCH BEI LAUFZEITFEHLER
3468	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3469	printf "\n +++ runtime error occured"
3470	locat=execution
3471	exit
3472	else
3473	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3474	printf "\n$striche\n *** execution finished \n"
3475
3476	# Stop the dvr streaming server and process the dvr output in order
3477	# to create dvrs- and html-files containing all streams
3478	if [[ "$dvrserver_id" != "" ]]
3479	then
3480	kill $dvrserver_id
3481	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3482
3483	# If there is a directory, data have been output by the
3484	# streaming server. Otherwise, user has chosen dvrp_output=local
3485	if [[ -d DATA_DVR ]]
3486	then
3487
3488	# Add the current dvr configuration file to the dvr output
3489	# directory
3490	cp .dvrserver.config DATA_DVR
3491
3492	# Process the dvr output (option -s for also generating
3493	# sequence mode data)
3494	process_dvr_output -d DATA_DVR -f $fname -s
3495
3496	else
3497
3498	# Process the local output
3499	process_dvr_output -l -d DATA_DVR -f $fname
3500
3501	fi
3502
3503	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3504	then
3505
3506	# Process dvr output generated in local mode (dvrp_output=local)
3507	process_dvr_output -l -d DATA_DVR -f $fname
3508
3509	fi
3510	fi
3511
3512
3513
3514	# Call of combine_plot_fields in order to merge single files written
3515	# by each PE into one file.
3516	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
3517	then
3518	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
3519	printf "\n 2d- and/or 3d-data may be incomplete!"
3520	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
3521	else
3522	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
3523	combine_plot_fields${block}.x
3524	fi
3525
3526
3527
3528	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3529	(( i = 0 ))
3530	while (( i < ioc ))
3531	do
3532	(( i = i + 1 ))
3533	if (( i == 1 ))
3534	then
3535	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
3536	fi
3537	printf "\n >>> ${out_command[$i]}"
3538	eval ${out_command[$i]}
3539	if (( i == ioc ))
3540	then
3541	printf "\n$striche\n"
3542	fi
3543	done
3544
3545
3546	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
3547	if [[ $do_trace = true ]]
3548	then
3549	printf "\n\n"
3550	ls -al
3551	fi
3552
3553
3554
3555	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
3556	(( i = 0 ))
3557	while (( i < iout ))
3558	do
3559	(( i = i + 1 ))
3560	if (( i == 1 ))
3561	then
3562	printf "\n\n *** saving OUTPUT-files:\n$striche"
3563	fi
3564
3565	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3566	files_for_pes=false; filetyp=file
3567	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
3568	then
3569	files_for_pes=true; filetyp=directory
3570	actionout[$i]=""
3571	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
3572	then
3573	actionout[$i]=""
3574	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
3575	then
3576	files_for_pes=true; filetyp=directory
3577	actionout[$i]="ar"
3578	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
3579	then
3580	actionout[$i]="ar"
3581	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
3582	then
3583	files_for_pes=true; filetyp=directory
3584	actionout[$i]="fl"
3585	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
3586	then
3587	actionout[$i]="fl"
3588	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
3589	then
3590	files_for_pes=true; filetyp=directory
3591	actionout[$i]="tr"
3592	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
3593	then
3594	actionout[$i]="tr"
3595	fi
3596
3597	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
3598	then
3599	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
3600	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
3601	then
3602	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
3603	else
3604
3605
3606	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3607	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3608	# REMOTE-RECHNUNGEN
3609	if [[ "${actionout[$i]}" = tr ]]
3610	then
3611	if [[ $localhost != $fromhost ]]
3612	then
3613	if [[ $files_for_pes = false ]]
3614	then
3615	cps=""
3616	cst=""
3617	else
3618	cps=-c
3619	cst="/"
3620	fi
3621	if [[ $localhost = ibmb \|\| $localhost = nech ]]
3622	then
3623
3624	# TRANSFER IN EIGENSTAENDIGEM JOB
3625	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3626	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3627	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3628	if [[ $files_for_pes = false ]]
3629	then
3630	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3631	else
3632	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
3633	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
3634	fi
3635
3636	echo "set -x" > transfer_${localout[$i]}
3637	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3638
3639	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
3640	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
3641	printf "\n or higher cycle\n"
3642	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3643
3644	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3645
3646	if [[ $localhost = nech ]]
3647	then
3648	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3649	else
3650	if [[ "$LOGNAME" = b323013 ]]
3651	then
3652	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3653	else
3654	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3655	fi
3656	fi
3657
3658	else
3659
3660	# TRANSFER INNERHALB DIESES JOBS
3661	transfer_failed=false
3662	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
3663	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
3664	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3665	[[ $? != 0 ]] && transfer_failed=true
3666
3667	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3668	# LOKALER MASCHINE ANLEGEN
3669	if [[ $transfer_failed = true ]]
3670	then
3671	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3672	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3673
3674	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3675	# ANLEGEN.
3676	eval local_catalog=${pathout[$i]}
3677	if [[ ! -d $local_catalog ]]
3678	then
3679	printf " *** local directory does not exist. Trying to create:\n"
3680	printf " $local_catalog \n"
3681	mkdir -p $local_catalog
3682	fi
3683	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3684	transfer_problems=true
3685	fi
3686	fi
3687	else
3688
3689	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
3690	actionout[$i]=""
3691	fi
3692	fi
3693
3694
3695	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3696	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3697	# REMOTE-RECHNUNGEN
3698	if [[ "${actionout[$i]}" = tra ]]
3699	then
3700	if [[ $localhost != $fromhost ]]
3701	then
3702	if [[ $localhost = ibmh \|\| $localhost = ibmb \|\| $localhost = nech ]]
3703	then
3704
3705	# TRANSFER IN EIGENSTAENDIGEM JOB
3706	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3707	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3708	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3709	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3710
3711	echo "set -x" > transfer_${localout[$i]}
3712	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3713
3714	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
3715	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
3716	printf "\n or higher cycle\n"
3717	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3718
3719	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3720
3721	if [[ $localhost = nech ]]
3722	then
3723	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3724	else
3725	if [[ $LOGNAME = b323013 ]]
3726	then
3727	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3728	else
3729	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3730	fi
3731	fi
3732
3733	else
3734
3735	# TRANSFER INNERHALB DIESES JOBS
3736	transfer_failed=false
3737	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
3738	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
3739	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3740	[[ $? != 0 ]] && transfer_failed=true
3741
3742	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3743	# LOKALER MASCHINE ANLEGEN
3744	if [[ $transfer_failed = true ]]
3745	then
3746	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3747	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3748
3749	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3750	# ANLEGEN
3751	eval local_catalog=${pathout[$i]}
3752	if [[ ! -d $local_catalog ]]
3753	then
3754	printf " *** local directory does not exist. Trying to create:\n"
3755	printf " $local_catalog \n"
3756	mkdir -p $local_catalog
3757	fi
3758
3759	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3760	transfer_problems=true
3761	fi
3762	fi
3763	else
3764
3765	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
3766	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
3767	actionout[$i]=a
3768	fi
3769	fi
3770
3771
3772	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
3773	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
3774	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
3775	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
3776	if [[ "${actionout[$i]}" = fl ]]
3777	then
3778	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3779	chmod g+rx $tmp_data_catalog
3780	if [[ $files_for_pes = false ]]
3781	then
3782	printf "\n >>> OUTPUT: ${localout[$i]} to"
3783	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3784	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
3785	else
3786	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
3787	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3788	mkdir $tmp_data_catalog/${frelout[$i]}
3789	cd ${localout[$i]}
3790	for file in $(ls *)
3791	do
3792	ln -f $file $tmp_data_catalog/${frelout[$i]}
3793	done
3794	cd $TEMPDIR
3795	fi
3796
3797
3798	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
3799	if [[ $store_on_archive_system = true ]]
3800	then
3801
3802	if [[ $archive_system = asterix ]]
3803	then
3804	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3805	if [[ $files_for_pes = false ]]
3806	then
3807	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3808	else
3809	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3810	fi
3811	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3812	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
3813	echo "then" >> archive_${frelout[$i]}
3814	echo " do_stageout=false" >> archive_${frelout[$i]}
3815	echo "else" >> archive_${frelout[$i]}
3816	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
3817	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
3818	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
3819	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
3820	if [[ $files_for_pes = false ]]
3821	then
3822	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
3823	else
3824	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
3825	fi
3826	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
3827	echo "fi" >> archive_${frelout[$i]}
3828	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3829	elif [[ $archive_system = DMF ]]
3830	then
3831	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3832	if [[ $files_for_pes = false ]]
3833	then
3834	printf "\n +++ archiving of single files impossible with $archive_system !\n"
3835	locat=DMF
3836	exit
3837	else
3838	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
3839	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
3840	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
3841	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
3842	fi
3843	elif [[ $archive_system = tivoli ]]
3844	then
3845	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3846	if [[ $files_for_pes = false ]]
3847	then
3848	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3849	echo "set -x" >> archive_${frelout[$i]}
3850	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3851	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3852	else
3853
3854	echo "set -x" >> archive_${frelout[$i]}
3855	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
3856	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3857	cd $tmp_data_catalog
3858	all_files=`ls -1 ${frelout[$i]}/*`
3859	cd - > /dev/null
3860	(( inode = 0 ))
3861	(( tp1 = tasks_per_node + 1 ))
3862	while (( inode < nodes ))
3863	do
3864	# echo "*** all_files = \"$all_files\" "
3865	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3866	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3867	# echo "*** tasks_per_node = \"$tasks_per_node\" "
3868	# echo "*** files = \"$files\" "
3869	# echo "*** all_files = \"$all_files\" "
3870	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3871	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3872	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
3873	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3874	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3875	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3876	(( inode = inode + 1 ))
3877	done
3878	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3879	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3880	fi
3881	elif [[ $archive_system = ut ]]
3882	then
3883	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3884	if [[ $files_for_pes = false ]]
3885	then
3886	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3887	echo "set -x" >> archive_${frelout[$i]}
3888	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3889	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3890	else
3891
3892	echo "set -x" >> archive_${frelout[$i]}
3893	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
3894	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
3895	cd $tmp_data_catalog
3896	all_files=`ls -1 ${frelout[$i]}/*`
3897	cd - > /dev/null
3898	(( inode = 0 ))
3899	(( tp1 = tasks_per_node + 1 ))
3900	while (( inode < nodes ))
3901	do
3902	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3903	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3904	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3905	(( inode = inode + 1 ))
3906	done
3907	fi
3908	elif [[ $archive_system = none ]]
3909	then
3910	printf " +++ archiving on $localhost not available!\n"
3911	fi
3912
3913	if [[ $archive_system != none ]]
3914	then
3915	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
3916	then
3917	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
3918	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog archive_${frelout[$i]}
3919	elif [[ $localhost = nech ]]
3920	then
3921	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
3922	fi
3923	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3924	fi
3925	else
3926	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
3927	fi
3928
3929
3930	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
3931	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
3932	if [[ $files_for_pes = false ]]
3933	then
3934	cat /dev/null > ${pathout[$i]}
3935	else
3936	mkdir -p ${pathout[$i]}
3937	fi
3938
3939	fi
3940
3941
3942	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
3943	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
3944	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
3945	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
3946	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
3947	# GEMAESSEN ARCHIVIERUNGEN GESETZT
3948	if [[ "${actionout[$i]}" = ar ]]
3949	then
3950	if [[ $files_for_pes = false ]]
3951	then
3952	printf "\n >>> OUTPUT: ${localout[$i]} to"
3953	printf "\n ${pathout[$i]}"
3954	printf "\n File will be copied to archive-system ($archive_system) !\n"
3955	else
3956	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
3957	printf "\n ${pathout[$i]}"
3958	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
3959	fi
3960	mv ${localout[$i]} ${frelout[$i]}
3961
3962	file_saved=false
3963
3964	if [[ $archive_system = asterix ]]
3965	then
3966	do_stageout=true
3967	(( stageout_anz = 0 ))
3968	while [[ $do_stageout = true ]]
3969	do
3970	if [[ $files_for_pes = false ]]
3971	then
3972	stageout ${frelout[$i]} > STAGE_OUTPUT
3973	else
3974	stageout -t ${frelout[$i]} > STAGE_OUTPUT
3975	fi
3976	cat STAGE_OUTPUT
3977	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
3978	then
3979	file_saved=true
3980	do_stageout=false
3981	else
3982	if [[ $files_for_pes = false ]]
3983	then
3984	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
3985	else
3986	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
3987	fi
3988	(( stageout_anz = stageout_anz + 1 ))
3989	if (( stageout_anz == 10 ))
3990	then
3991	printf "\n +++ stoped after 10 unsuccessful tries!"
3992	archive_save=false
3993	do_stageout=false
3994	else
3995	printf "\n *** new try to store on archive after 15 min:"
3996	sleep 900
3997	fi
3998	fi
3999	done
4000	elif [[ $archive_system = DMF ]]
4001	then
4002	if [[ $files_for_pes = false ]]
4003	then
4004	printf "\n +++ archiving of single files impossible on $archive_system!\n"
4005	locat=DMF
4006	exit
4007	else
4008	rm -rf $ARCHIVE/${frelout[$i]}
4009	cp -r ${frelout[$i]} $ARCHIVE
4010	fi
4011	file_saved=true
4012	elif [[ $archive_system = tivoli ]]
4013	then
4014	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4015	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4016	# GELEGT WERDEN
4017	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4018	chmod g+rx $tmp_data_catalog
4019	if [[ $files_for_pes = false ]]
4020	then
4021	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4022	else
4023	mkdir $tmp_data_catalog/${frelout[$i]}
4024	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4025	fi
4026
4027	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4028	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4029	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4030	if [[ $files_for_pes = false ]]
4031	then
4032	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4033	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4034	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4035	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4036	else
4037	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4038	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4039	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4040	fi
4041
4042	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
4043	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4044	file_saved=true
4045
4046	elif [[ $archive_system = ut ]]
4047	then
4048	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4049	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4050	# GELEGT WERDEN
4051	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4052	chmod g+rx $tmp_data_catalog
4053	if [[ $files_for_pes = false ]]
4054	then
4055	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4056	else
4057	mkdir $tmp_data_catalog/${frelout[$i]}
4058	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4059	fi
4060
4061	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4062	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4063	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4064	if [[ $files_for_pes = false ]]
4065	then
4066	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4067	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4068	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4069	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4070	else
4071	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4072	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4073	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4074	fi
4075
4076	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
4077	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4078	file_saved=true
4079
4080	else
4081	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
4082	archive_save=false
4083	fi
4084	if [[ $file_saved = true ]]
4085	then
4086	if [[ $files_for_pes = false ]]
4087	then
4088	cat /dev/null > ${pathout[$i]}
4089	else
4090	mkdir -p ${pathout[$i]}
4091	fi
4092	fi
4093	fi
4094
4095	# APPEND AUF LOKALER MASCHINE
4096	if [[ "${actionout[$i]}" = "a" ]]
4097	then
4098	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
4099	cat ${localout[$i]} >> ${pathout[$i]}
4100	fi
4101
4102	# KOPIEREN AUF LOKALER MASCHINE
4103	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
4104	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
4105	then
4106
4107	# KOPIEREN AUF EINPROZESSORMASCHINE
4108	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4109	then
4110	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
4111	if [[ $link_local_output = true ]]
4112	then
4113	printf " using ln -f\n"
4114	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4115	fi
4116	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4117	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
4118	then
4119	if [[ $link_local_output = true ]]
4120	then
4121	printf " ln failed, using cp...\n"
4122	fi
4123	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4124	fi
4125	else
4126	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
4127	if [[ $link_local_output = true ]]
4128	then
4129	printf " using ln -f\n"
4130	ln -f ${localout[$i]} ${pathout[$i]}
4131	fi
4132	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4133	if [[ ! -f "${pathout[$i]}" ]]
4134	then
4135	if [[ $link_local_output = true ]]
4136	then
4137	printf " ln failed, using cp...\n"
4138	fi
4139	cp ${localout[$i]} ${pathout[$i]}
4140	fi
4141	fi
4142
4143	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
4144	then
4145
4146	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
4147	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
4148	# WIRD DANN KOPIERT
4149	# PER MOVE UMBENANNT WERDEN
4150	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4151	if [[ $link_local_output = true ]]
4152	then
4153	printf " using ln -f\n"
4154	mkdir ${pathout[$i]}
4155	cd ${localout[$i]}
4156	for file in $(ls *)
4157	do
4158	ln -f $file ${pathout[$i]}
4159	done
4160	cd $TEMPDIR
4161	fi
4162	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4163	if [[ ! -f "${pathout[$i]}/_0000" ]]
4164	then
4165	if [[ $link_local_output = true ]]
4166	then
4167	printf " ln failed for .../_0000, using cp...\n"
4168	fi
4169	cp -r ${localout[$i]} ${pathout[$i]}
4170	fi
4171
4172	fi
4173	fi
4174	done
4175	if (( i != 0 ))
4176	then
4177	if [[ $transfer_problems = true ]]
4178	then
4179	printf "\n$striche\n *** OUTPUT-files saved"
4180	printf "\n +++ WARNING: some data transfers failed! \n"
4181	else
4182	printf "\n$striche\n *** all OUTPUT-files saved \n"
4183	fi
4184	fi
4185
4186
4187	# EVENTUELL FOLGEJOB STARTEN
4188	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4189	if [[ -f CONTINUE_RUN ]]
4190	then
4191
4192	if [[ $archive_save = true ]]
4193	then
4194
4195	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4196	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4197	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4198	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4199	# HANDEN
4200	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4201	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4202	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4203	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4204	then
4205	mc=`echo $mc \| sed 's/#/f/g'`
4206	fi
4207
4208
4209	# JOB STARTEN
4210	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4211	echo " $mc"
4212	printf "\n$striche\n"
4213	if [[ $localhost != $fromhost ]]
4214	then
4215
4216	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms \|\| $localhost = lctit ]]
4217	then
4218	echo "*** ssh will be used to initiate restart-runs!"
4219	echo " return_addres=\"$return_addres\" "
4220	echo " return_username=\"$return_username\" "
4221	if [[ $return_addres = 172.20.25.41 ]]
4222	then
4223	# WORKAROUND AUF SCIROCCO AM TIT
4224	print "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc " \| ssh $return_addres -l $return_username
4225	elif [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4226	then
4227	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export LD_LIBRARY_PATH=\$LD_LIBRARY_PATH:/muksoft/packages/intel/Compiler/11.0/083/lib/intel64/;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4228	else
4229	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4230	fi
4231	else
4232	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4233	locat=restart; exit
4234	fi
4235
4236	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4237	# DER AKTUELLE JOB ENDET
4238	if [[ $queue = special1q ]]
4239	then
4240	sleep 120
4241	else
4242	sleep 30
4243	fi
4244
4245	else
4246
4247	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4248	# RUFEN WERDEN, AUSSER AUF lcfimm
4249	cd $LOCAL_PWD
4250	if [[ $localhost = lcfimm ]]
4251	then
4252	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4253	else
4254	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4255	fi
4256	cd - > /dev/null
4257	fi
4258	printf "\n$striche\n *** restart-run initiated \n"
4259
4260
4261	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4262	# GEHOLT WORDEN SIND, LOESCHEN
4263	(( i = 0 ))
4264	while (( i < iin ))
4265	do
4266	(( i = i + 1 ))
4267	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4268	then
4269	rm -r $tmp_data_catalog/${frelin[$i]}
4270	fi
4271	done
4272
4273	else
4274
4275	printf "\n +++ no restart-run possible, since errors occured"
4276	printf "\n during the archive process"
4277	fi
4278
4279	fi
4280
4281
4282
4283	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4284	if [[ "$email_notification" != "none" ]]
4285	then
4286
4287	if [[ $localhost != $fromhost ]]
4288	then
4289	if [[ -f CONTINUE_RUN ]]
4290	then
4291	echo "PALM restart run necessary" > email_text
4292	echo "description header of actual run:" >> email_text
4293	cat CONTINUE_RUN >> email_text
4294	echo "mrun-command to restart:" >> email_text
4295	echo "$mc" >> email_text
4296	else
4297	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4298	fi
4299	mail $email_notification < email_text
4300	printf "\n *** email notification sent to \"$email_notification\" "
4301	fi
4302	fi
4303
4304
4305
4306	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4307	cd $HOME
4308	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4309
4310	else
4311
4312
4313	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4314	# CHENDE AKTIONEN DURCHGEFUEHRT
4315
4316	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4317	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
4318	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4319	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4320	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4321	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4322	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4323	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4324	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4325	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4326	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4327	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4328	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4329	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4330	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4331	if [[ $use_openmp = true ]]
4332	then
4333	mrun_com=${mrun_com}" -O"
4334	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $threads_per_task"
4335	else
4336	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4337	fi
4338	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
4339	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4340	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4341	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4342	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4343	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4344	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4345	if [[ $do_remote = true ]]
4346	then
4347	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4348	fi
4349
4350
4351	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4352	jobfile=jobfile.$RANDOM
4353
4354
4355	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4356	echo "mkdir $TEMPDIR" >> $jobfile
4357	echo "cd $TEMPDIR" >> $jobfile
4358
4359
4360	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4361	if [[ $do_trace = true ]]
4362	then
4363	echo "set -x" >> $jobfile
4364	else
4365	echo "set +vx" >> $jobfile
4366	fi
4367
4368
4369	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4370	# DATEI FUER DEN JOB
4371	if [[ $( echo $host \| cut -c1-5 ) = lcsgi ]]
4372	then
4373
4374	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4375	# KOPIEREN
4376	if [[ $restart_run != true ]]
4377	then
4378	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4379	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4380	fi
4381
4382	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4383	echo "set -x" >> $jobfile
4384	echo "scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4385	echo "export SOURCES_COMPLETE=true" >> $jobfile
4386
4387	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4388	# ARBEITSVERZEICHNIS VERSCHIEBEN
4389	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4390	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4391	echo "execute_mrun=true" >> $jobfile
4392	echo " " >> $jobfile
4393
4394	else
4395
4396	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4397	# SOWIE GEGEBENENFALLS DES MAKEFILES
4398	if [[ $do_compile = true ]]
4399	then
4400
4401	source_catalog=SOURCES_FOR_RUN_$fname
4402
4403	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4404	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4405	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4406	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4407	echo "export SOURCES_COMPLETE=true" >> $jobfile
4408	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4409
4410	for filename in $source_list
4411	do
4412	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4413	echo "cat > $filename << \"%END%\"" >> $jobfile
4414	cat $source_catalog/$filename >> $jobfile
4415	echo " " >> $jobfile
4416	echo "%END%" >> $jobfile
4417	echo " " >> $jobfile
4418	done
4419
4420	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4421	echo "cat > Makefile << \"%END%\"" >> $jobfile
4422	cat $source_catalog/Makefile >> $jobfile
4423	echo " " >> $jobfile
4424	echo "%END%" >> $jobfile
4425	echo " " >> $jobfile
4426
4427	echo "cd - > /dev/null" >> $jobfile
4428
4429	fi
4430
4431
4432	# ABSPEICHERN DER KONFIGURATIONSDATEI
4433	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4434	echo "cat > $config_file << \"%END%\"" >> $jobfile
4435	cat $config_file >> $jobfile
4436	echo "%END%" >> $jobfile
4437	echo " " >> $jobfile
4438
4439
4440	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
4441	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4442	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
4443	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
4444	echo "%END%" >> $jobfile
4445	if [[ $host = lctit ]]
4446	then
4447	echo "sed 's/bin\/ksh/home2\/usr5\/mkanda\/pub\/ksh/' < $mrun_script_name > mrun_new" >> $jobfile
4448	echo "mv mrun_new $mrun_script_name" >> $jobfile
4449	fi
4450	echo "chmod u+x $mrun_script_name" >> $jobfile
4451	echo "execute_mrun=true" >> $jobfile
4452	echo " " >> $jobfile
4453
4454	fi
4455
4456
4457	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
4458	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
4459	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
4460	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
4461	if [[ $do_remote = true ]]
4462	then
4463	(( i = 0 ))
4464	while (( i < iin ))
4465	do
4466	(( i = i + 1 ))
4467	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
4468	if [[ "${transin[$i]}" = job ]]
4469	then
4470	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
4471	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
4472	echo " " >> $jobfile
4473	echo "%END%" >> $jobfile
4474	else
4475	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
4476	fi
4477
4478	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
4479	echo "if [[ \$? = 1 ]]" >> $jobfile
4480	echo "then" >> $jobfile
4481	echo " echo \" \" " >> $jobfile
4482	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
4483	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
4484	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
4485	echo " execute_mrun=false" >> $jobfile
4486	echo "fi" >> $jobfile
4487	done
4488	fi
4489
4490	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
4491	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
4492	echo "LOCAL_PWD=$working_directory" >> $jobfile
4493	echo "export LOCAL_PWD" >> $jobfile
4494
4495	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
4496	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
4497	echo "export LOCAL_MRUN_PATH" >> $jobfile
4498
4499	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
4500	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
4501	then
4502	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
4503	fi
4504
4505	# MRUN AUF ZIELRECHNER AUFRUFEN
4506	echo "set -x" >> $jobfile
4507	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
4508
4509	echo 'ls -al; echo `pwd`' >> $jobfile
4510	echo "cd \$HOME" >> $jobfile
4511	echo "rm -rf $TEMPDIR" >> $jobfile
4512
4513
4514
4515
4516	# JOB PER SUBJOB STARTEN
4517	if [[ $silent = false ]]
4518	then
4519	printf "\n "
4520	else
4521	printf "\n\n"
4522	fi
4523
4524	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $jobfile
4525	rm -rf $jobfile
4526
4527
4528	fi # ENDE REMOTE-TEIL
4529
4530
4531
4532	# ENDE DER PROZEDUR

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