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source: palm/trunk/SCRIPTS/mrun @ 487

Last change on this file since 487 was 475, checked in by raasch, 15 years ago
make options can be set in configuration file; bugfix for generating serial jobs; bugfix for masked output
Property svn:keywords set to `Id Rev`
File size: 169.3 KB

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1	#!/bin/ksh
2	# mrun - Plot-Shellskript
3	# $Id: mrun 475 2010-02-04 02:26:16Z raasch $
4
5	# Prozedur zum Starten von Modellaeufen
6
7	# letzte Aenderung:
8	# 03/03/94 - Siggi - Entwicklungsbeginn
9	# 21/03/94 - Siggi - Entwicklungsabschluss (Version 1.0)
10	# 09/12/94 - Siggi - allexport unterbunden; statt dessen werden jetzt ein-
11	# zelne Variable exportiert. Dies ist noetig, weil an-
12	# sonsten irgendein Speicher ueberlaeuft und von mrun
13	# aufgerufene Programme (z.B. stageout) mit Fehlern
14	# abbrechen (too many arguments)
15	# 20/06/95 - Siggi - noclobber muss explizit abgeschaltet, da jetzt
16	# defaultmaessig im RRZN-Profile eingeschaltet
17	# 10/06/97 - Siggi - Zusaetzliche Option -C bei cpp, damit // nicht
18	# wegfallen
19	# 25/04/00 - Siggi - Version 1.5
20	# remote_addres und remote_user in return_addres bzw.
21	# return_username umbenannt, return_username wird dem
22	# mrun-Aufruf im Job ueber Option -U mitgegeben.
23	# Neue Variable remote_username, die beim interaktiven
24	# mrun-Aufruf zwingend ueber die neue Option -u oder
25	# in der Konfigurationsdatei angegeben werden muss.
26	# 08/02/01 - Siggi - Alle mrun-Meldungen ins englische uebersetzt,
27	# Version 1.7
28	# 05/05/02 - Siggi - Uebersetzungen mittels make-Mechanismus moeglich
29	# 21/11/02 - Siggi - ENV-Variable XLFRTEOPTS wird vor Ausfuehrung auf
30	# IBM gesetzt, um Record-Laenge der NAMELIST-Dateien,
31	# zu bestimmen; Praeprozessoroptionen haben nun alle
32	# die Form -Dtext=text, weil auf IBM sonst text durch
33	# die leere Zeichenkette ersetzt wird
34	# 01/08/03 - Siggi - Test of implementing dvrp+1PE on ibm
35	# 07/01/04 - Siggi - additional preprocessor directive for ibm included
36	# (-D$OMP=OMP) in order to avoid problems with
37	# OMP_NUM_THREADS
38	# 04/01/05 - Siggi - archiving on hanni and berni is done in separate
39	# tar files, one for each node used
40	# 07/01/04 - Siggi - old code for t3e, vpp and hpcs eliminated
41	# 09/01/05 - Siggi - workaround for getting the IP address on gfdl3
42	# 17/01/05 - Siggi - job for data transfer to local machine now within
43	# job class c1 (HLRN)
44	# 27/01/05 - Siggi - IP address workaround for gfdl3 removed
45	# 28/01/05 - Siggi - tar-filenames on $PERM (HLRN) now include the
46	# base filename and cycle number
47	# 16/02/05 - Gerald - hababai validated
48	# 14/03/05 - Siggi - abort on NEC after first runtime error (F_ERRCNT)
49	# 29/03/05 - Marcus - berni*-en0 validated
50	# 21/04/05 - Siggi - transfer-job-protocol for avs-data is no more stored
51	# 24/04/05 - Siggi - netcdf support on lcmuk
52	# 25/04/05 - Siggi - netcdf support on gfld3 (decalpha)
53	# 11/05/05 - Siggi - files with non-numeric extensions (.xxx after cycle
54	# number) can now be used within interactive runs
55	# 12/05/05 - Siggi - netcdf support on ibm
56	# 13/05/05 - Siggi - error in tar-filenames on $PERM (HLRN) removed
57	# 18/05/05 - Siggi - netcdf support on nec
58	# 24/05/05 - Siggi - netcdf support on ibms
59	# 14/06/05 - Siggi - sleep interval after submit of restart job increased
60	# to 30 seconds
61	# 28/06/05 - Siggi - bora adjusted to new intel compiler (LD_LIBRARY_
62	# PATH is temporarily set)
63	# 07/09/05 - Siggi - setting of MP_EAGER_LIMIT switched off because it
64	# caused warnings in the job protocol
65	# 20/10/05 - Siggi - update of netcdf-version on decalpha (gfdl3)
66	# 25/10/05 - Siggi - error in listing files for getting the cycle number
67	# removed
68	# 26/10/05 - Siggi - new paths for dvrp-library, transfer of catalogs
69	# realized by file attribute trpe
70	# 28/10/05 - Siggi - if existing, the file extension is output in case
71	# of missing input file - no job abort in case of
72	# missing input files with file extensions
73	# (preliminary solution)
74	# 31/10/05 - Siggi - data transfer from nech now within seperate job
75	# 04/11/05 - Siggi - netcdf 3.6.0-p1 on ibmh/ibmb
76	# 07/12/05 - Siggi - gallego and elephanta admitted
77	# 30/12/05 - Siggi - gfdl5 (ibmy) admitted
78	# 10/01/06 - Siggi - cpp directive for NetCDF 64bit support
79	# 20/01/06 - Siggi - cpp directive for ibmy
80	# 09/02/06 - Siggi - ibmy admitted for batch mode
81	# 13/04/06 - Siggi - ostria admitted
82	# 18/04/06 - Siggi - usage of OpenMP implemented (additional option -O)
83	# 10/05/06 - Siggi - environment variable XLSMPOPTS set on IBM for
84	# optimization of OpenMP runs (option stacksize is
85	# necessary for large gridpoint numbers because
86	# otherwise a segmentation fault occurs)
87	# 23/05/05 - Siggi - lctit (SUN Fire X4600) admitted
88	# 21/08/06 - Siggi - standard mrun path on scirocco is as on bora
89	# 23/08/06 - Siggi - netcdf support for scirocco (notebook)
90	# 20/09/06 - Marcus - add DVRP library on nech
91	# 24/10/06 - Siggi - Environment variables for PALM steering are written
92	# on local NAMELIST file ENVPAR
93	# 24/11/06 - Siggi - levanto admitted, maestro switched to ifc 9.1
94	# 28/11/06 - Siggi - call to interpret_config.x_levanto because of SuSe 10
95	# 06/02/07 - Siggi - add DVRP library on lcmuk
96	# 07/02/07 - Siggi - revision of source code handling, source code is
97	# now expected in directory given by source_path and
98	# not in the current working directory, source code
99	# files provided in add_source_path are allways
100	# compiled, source code to be compiled is allways
101	# sampled in SOURCES_FOR_RUN_$fname which is a
102	# subdirectory of the current working directory,
103	# -s TEST changed to -s WRITE_PERMIT or -s WP,
104	# adapted for RIAM (neck)
105	# bugfix for cycle number of output file (extout)
106	# all hpmuk-related code removed
107	# 14/02/07 - Siggi - dvrp support for neck added
108	# 28/02/07 - Siggi - empty lines in configuration file are accepted
109	# mrun_path replaced by PALM_BIN,
110	# all machines are calling interpret_config.x
111	# 14/03/07 - Siggi - fimm admitted, revision number added to terminal
112	# output
113	# 16/03/07 - Siggi - adjustments for lctit
114	# 29/03/07 - Siggi - global revision transfered to batch job by new
115	# option -G
116	# 30/03/07 - Siggi - compilation "by hand" removed, cpp-directives/options
117	# + netcdf/dvrp-options are read from configuration
118	# file, host identifier (local_host) is read from
119	# config file, code related to ftp filetransfer
120	# removed (incl. option -f)
121	# 19/06/07 - Siggi - time limit for cdata jobs increased
122	# 25/07/07 - Siggi - two sets of executables can be started on lcmuk,
123	# if new option -Y (coupling) is given,
124	# output of executables to aout_output removed,
125	# messages are immediately written to stdout instead
126	# 03/08/07 - Marcus - add XOPT="-X $numprocs" for lcfimm
127	# 09/08/07 - Marcus - workaround on lcfimm to propagate environment
128	# variables out to the nodes in coupled mode -disabled-
129	# 13/08/07 - Marcus - start local restart jobs per ssh on lcfimm
130	# 28/08/07 - Marcus - completely remove workaround on lcfimm to propagate
131	# environment variables out to the nodes in coupled mode
132	# 15/10/07 - Siggi - Preliminary adjustments for lctit, based on Jin's
133	# suggestions
134	# 19/10/07 - Marcus - further adjustments for lctit: add new optional
135	# argument -g group_number, admit all sla* node_usage
136	# queues
137	# 30/10/07 - Marcus - further adjustments for queues on lctit
138	# 14/02/08 - Bjoern - link of restart files with long file name possible
139	# 28/02/08 - Marcus - If environment variable link_local_output is set to
140	# true, mrun tries "ln -f" on local output and resorts
141	# to "cp" or "cp -r" on error
142	# 15/04/08 - Siggi - argument -c introduced to most of the subjob calls,
143	# which allows the user to choose his own job catalog
144	# by setting job_catalog in the configuration file
145	# (default is ~/job_queue),
146	# workaround for mpiexec with -env option,
147	# adjustments for lcxt4 (Bergen Center for Computational
148	# Science)
149	# 22/05/08 - Marcus - If environment variable link_local_input is set to
150	# true, mrun tries "ln -f" on local input and resorts
151	# to "cp" or "cp -r" on error
152	# 27/05/08 - Siggi - PATH is set to PALM_BIN everywhere (missing so far)
153	# 14/07/08 - Siggi - adjustments for lcsgih
154	# 08/08/08 - Marcus - typo removed in lcxt4 branch
155	# 17/09/08 - Siggi - restart mechanism adjusted for lcsgi
156	# 02/10/08 - BjornM - argument "-Y" modified, adjustments for coupled runs
157	# 21/10/08 - Siggi - bugfix for the case that -K has more than one
158	# argument
159	# 08/11/08 - Siggi - bugfix for depository path settings in configuration
160	# file
161	# 11/11/08 - Siggi - rules for using user code files changed: user
162	# code splitted into one file per subroutine,
163	# user can provide his/her own makefile, only
164	# default source-code filenames are allowed
165	# 14/11/08 - Siggi - cond1 and cond2 are part of the depository name
166	# 08/01/09 - Siggi - mpi module on sgi machines to be used can be set
167	# with environment variable mpilib
168	# 13/01/09 - Siggi - totalview on hice/bice can be used in debug mode
169	# using environment variable totalview
170	# 25/02/09 - Siggi - cputime-option (-t) is allowed to be omitted for
171	# interactive runs
172	# 05/03/09 - Siggi - adjustments for new NEC-SX9 at RIAM (necriam)
173	# 16/03/09 - Siggi - dvrp_lib, dvrp_inc replaced by dvr_lib, dvr_inc,
174	# dvr streaming server is automatically started using
175	# new variable dvr_server and a configuration file
176	# .dvrserver.config,
177	# processing of dvr output files using new script
178	# process_dvr_output implemented, in order to make
179	# dvr application more user friendly
180	# 20/03/09 - Marcus - update of n1ge command for lctit
181	# 16/04/09 - Siggi - new option -y for precursor (uncoupled) ocean runs
182	# to be followed by a coupled atmosphere-ocean run
183	# 21/04/09 - Siggi - adjustments for new IBM at DKRZ, which is now ibmh
184	# 24/06/09 - BjornM - adjustments for coupled/precursor runs on ibmy
185	# 08/07/09 - Siggi - default value for email_notification is none,
186	# option -e added to subjob
187	# 19/08/09 - Marcus - MPI debug option
188	# 21/08/09 - Marcus - totalview on hice/bice also available for mvapich2
189	# 25/08/09 - BjornM - adpated for lck
190	# 26/08/09 - Siggi - additional environment variables for mpt on ice2
191	# 26/08/09 - Marcus - adjustment for ice2 on lcsgib
192	# 29/09/09 - Siggi - default value for archiving is false, option "-A"
193	# switches on archiving, archiving on SGI-ICE enabled
194	# 16/10/09 - Carolin- adjustments for archiving on SGI-ICE of binary files;
195	# adjustment for special1q
196	# 18/12/09 - Carolin- modification of archiving (permq)
197	# 01/02/10 - Siggi - adapted for lcxt5m and lckyoto (Fujitsu HX600)
198	# 03/02/10 - Siggi - make options (mopts) to be set by configuration file
199	# implemented
200
201
202
203	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
204
205	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
206	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
207	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
208
209	AddFilenames=""
210	additional_conditions=""
211	add_source_path=""
212	afname=""
213	archive_save=true
214	archive_system=none
215	compiler_name=""
216	cond1=""
217	cond2=""
218	config_file=.mrun.config
219	coupled_dist=""
220	coupled_mode="mpi1"
221	cpp_opts=""
222	cpp_options=""
223	cpumax=0
224	cpurest=0
225	delete_temporary_catalog=true
226	do_batch=false
227	do_compile=true
228	do_remote=false
229	do_stagein=true
230	do_stageout=true
231	do_trace=false
232	email_notification="none"
233	exclude=""
234	executable=""
235	execution_error=false
236	fimm=false
237	fname=test
238	fromhost=""
239	global_revision=""
240	group_number=none
241	host=""
242	host_file=""
243	hp=""
244	ignore_archive_error=false
245	input_list=""
246	interpreted_config_file=""
247	job_catalog="~/job_queue"
248	job_on_file=""
249	keep_data_from_previous_run=false
250	link_local_input=false
251	link_local_output=false
252	localhost_realname=$(hostname)
253	local_compile=false
254	local_dvrserver_running=.FALSE.
255	locat=normal
256	mainprog=""
257	makefile=""
258	mc=$0
259	while [[ $(echo $mc \| grep -c "/") != 0 ]]
260	do
261	mc=`echo $mc \| cut -f2- -d"/"`
262	done
263	module_files=""
264	mrun_script_name=$mc
265	netcdf_inc=""
266	netcdf_lib=""
267	netcdf_support=false
268	node_usage=default
269	numprocs=""
270	numprocs_atmos=0
271	numprocs_ocean=0
272	OOPT=""
273	openmp=false
274	output_list=""
275	package_list=""
276	punkte="..........................................................."
277	queue=none
278	read_from_config=""
279	restart_run=false
280	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
281	if [[ $return_addres = 130.75.105.158 ]]
282	then
283	return_addres=172.20.25.41
284	echo "+++ WARNING: return_addres changed to $return_addres !!!!!"
285	fi
286	return_password=""
287	return_username=$LOGNAME
288	remotecall=false
289	remote_username=""
290	run_coupled_model=false
291	run_mode=""
292	scirocco=false
293	store_on_archive_system=false
294	striche=" ----------------------------------------------------------------------------"
295	silent=false
296	source_list=""
297	source_path=SOURCE
298	tasks_per_node=""
299	threads_per_task=1
300	tmpcreate=false
301	tmp_data_catalog=""
302	transfer_problems=false
303	usern=$LOGNAME
304	use_openmp=false
305	working_directory=`pwd`
306	TOPT=""
307	XOPT=""
308	zeit=$( date \| cut -c 12-19 )
309
310	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
311	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
312
313	typeset -R30 calltime
314	typeset -L20 spalte1
315	typeset -L40 spalte2
316	typeset -L60 spalte3
317	typeset -L35 string1=`date`
318	typeset -L12 string2=$usern
319	typeset -L12 string3=$localhost_realname
320	typeset -L12 string4
321	typeset -L12 string5
322	typeset -L30 version="MRUN 2.0 Rev$Rev: 475 $"
323
324
325
326	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
327	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
328
329	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
330	# EXPORTIERT WERDEN
331	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
332	export group_number input_list memory numprocs output_list queue run_mode
333
334
335
336	# FEHLERBEHANDLUNG
337	# BEI EXIT:
338	trap 'rm -rf $working_directory/tmp_mrun
339	if [[ $locat != localhost ]]
340	then
341	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
342	# then
343	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
344	#MRUN-calls on $localhost
345	#
346	#date and time user localhost remotehost termination mrun-command
347	#--------------------------------------------------------------------------------------------------------------------
348	#%STATEND%
349	# chmod 666 ${mrun_path}/statistik/mrun_statistik
350	# fi
351	#
352	# # EINTRAG IN DIE STATISTIK-DATEI
353	# string4=$host
354	# string5=$locat
355	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
356	# then
357	# if [[ $do_batch = true ]]
358	# then
359	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
360	# else
361	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
362	# fi
363	# fi
364	echo " " > /dev/null
365	fi
366
367	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
368	then
369
370	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
371	(( i = 0 ))
372	while (( i < iec ))
373	do
374	(( i = i + 1 ))
375	printf "\n *** Execution of ERROR-command:\n"
376	printf " >>> ${err_command[$i]}\n"
377	eval ${err_command[$i]}
378	done
379	if [[ -n $interpreted_config_file ]] then
380	rm -rf $interpreted_config_file
381	fi
382	if [[ -n .mrun_environment ]] then
383	rm -rf .mrun_environment
384	fi
385	if [[ $tmpcreate = true ]]
386	then
387	printf "\n *** Contents of \"$TEMPDIR\":\n"
388	ls -al; cd
389	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
390	fi
391	if [[ "$dvrserver_id" != "" ]]
392	then
393	echo "+++ killing dvrserver_id=$dvrserver_id"
394	kill $dvrserver_id
395	fi
396	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
397	then
398	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
399	fi
400	printf "\n\n+++ MRUN killed \n\n"
401	elif [[ $locat != control_c ]]
402	then
403	printf "\n\n --> all actions finished\n\n"
404	printf " Bye, bye $usern !!\n\n"
405	fi' exit
406
407
408	# BEI TERMINAL-BREAK:
409	trap 'rm -rf $working_directory/tmp_mrun
410	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
411	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
412	then
413	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
414	fi
415	if [[ "$dvrserver_id" != "" ]]
416	then
417	echo "+++ killing dvrserver_id=$dvrserver_id"
418	kill $dvrserver_id
419	fi
420	printf "\n+++ MRUN killed by \"^C\" \n\n"
421	locat=control_c
422	exit
423	' 2
424
425
426	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
427	# BEEN SET
428	if [[ "$PALM_BIN" = "" ]]
429	then
430	printf "\n +++ environment variable PALM_BIN has not been set"
431	printf "\n please set it to the directory where the PALM scripts are located"
432	locat=palm_bin; exit
433	fi
434	export PATH=$PALM_BIN:$PATH
435
436
437
438	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
439	# FUER FOLGEJOBS BENOETIGT WIRD
440	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:Op:P:q:r:R:s:St:T:u:U:vxX:yY: option
441	do
442	case $option in
443	(a) afname=$OPTARG;;
444	(A) store_on_archive_system=true; mc="$mc -A";;
445	(b) do_batch=true; mc="$mc -b";;
446	(B) delete_temporary_catalog=false; mc="$mc -B";;
447	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
448	(C) restart_run=true; mc="$mc -C";;
449	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
450	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
451	(F) job_on_file="-D"; mc="$mc -F";;
452	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
453	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
454	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
455	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
456	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
457	(I) ignore_archive_error=true; mc="$mc -I";;
458	(k) keep_data_from_previous_run=true; mc="$mc -k";;
459	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
460	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
461	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
462	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
463	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
464	(O) use_openmp=true; mc="$mc -O";;
465	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
466	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
467	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
468	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
469	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
470	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
471	(S) read_from_config=false; mc="$mc -S";;
472	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
473	(T) tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
474	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
475	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
476	(v) silent=true; mc="$mc -v";;
477	(x) do_trace=true;set -x; mc="$mc -x";;
478	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
479	(y) ocean_file_appendix=true; mc="$mc -y";;
480	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
481	(\?) printf "\n +++ unknown option $OPTARG \n"
482	printf "\n --> type \"$0 ?\" for available options \n"
483	locat=parameter;exit;;
484	esac
485	done
486
487
488	# EVTL. POSITIONSPARAMETER EINLESEN
489	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
490	shift OPTIND-1
491
492
493	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
494	if [[ "$1" = "?" ]]
495	then
496	(printf "\n *** mrun can be called as follows:\n"
497	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. <modus>\n"
498	printf "\n Description of available options:\n"
499	printf "\n Option Description Default-Value"
500	printf "\n -a base name of input files equiv. -d"
501	printf "\n -A archiving when using file-attribute fl"
502	printf "\n -b batch-job on local machine ---"
503	printf "\n -B do not delete temporary directory at end ---"
504	printf "\n -c configuration file .mrun.config"
505	printf "\n -d base name of files attached to program test"
506	printf "\n -D preprocessor(cpp)-directives \"\" "
507	printf "\n -F create remote job file only ---"
508	printf "\n -h execution host $localhost_realname"
509	printf "\n -i INPUT control list \"\" "
510	printf "\n -I archiving errors of previous batch-jobs"
511	printf "\n will be ignored"
512	printf "\n -k keep data from previous run"
513	printf "\n -K additional conditions for controling"
514	printf "\n usage of conditional code and"
515	printf "\n env-variables in configuration file \"\" "
516	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
517	printf "\n -M Makefile name Makefile"
518	printf "\n -n node usage (shared/not_shared) depending on -h"
519	printf "\n -o OUTPUT control list \"\" "
520	printf "\n -O use OpenMP ---"
521	printf "\n -p software package list \"\" "
522	printf "\n -q queue \"$queue\" "
523	printf "\n -r run control list (combines -i -o) \"\" "
524	printf "\n -s filenames of routines to be compiled \"\" "
525	printf "\n must end with .f, .f90, .F, or .c !"
526	printf "\n use \"..\" for more than one file and wildcards"
527	printf "\n -s TEST compiles all files with w-permit"
528	printf "\n -S config file interpreted by shellscript ---"
529	printf "\n -t allowed cpu-time in seconds (batch) 0"
530	printf "\n -T tasks per node depending on -h"
531	printf "\n -u username on remote machine \"\" "
532	printf "\n -v no prompt for confirmation ---"
533	printf "\n -x tracing of mrun for debug purposes ---"
534	printf "\n -X # of processors (on parallel machines) 1"
535	printf "\n -y add appendix \"_O\" to all local output"
536	printf "\n files (ocean precursor runs followed by"
537	printf "\n coupled atmosphere-ocean runs) ---"
538	printf "\n -Y run coupled model, \"#1 #2\" with"
539	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
540	printf "\n "
541	printf "\n Possible values of positional parameter <modus>:"
542	printf "\n \"?\" - this outline \n\n") \| more
543	exit
544	elif [[ "$1" != "" ]]
545	then
546	printf "\n +++ positional parameter $1 unknown \n"
547	locat=parameter; exit
548	fi
549
550
551
552	# KURZE STARTMELDUNG
553	printf "\n*** $version "
554	printf "\n will be executed. Please wait ..."
555
556
557
558	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
559	if [[ ! -f $config_file ]]
560	then
561	printf "\n\n +++ configuration file: "
562	printf "\n $config_file"
563	printf "\n does not exist"
564	locat=connect; exit
565	fi
566
567
568	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
569	line=""
570	grep "%host_identifier" $config_file > tmp_mrun
571	while read line
572	do
573	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
574	then
575	HOSTNAME=`echo $line \| cut -d" " -s -f2`
576	host_identifier=`echo $line \| cut -d" " -s -f3`
577	if [[ $localhost_realname = $HOSTNAME ]]
578	then
579	localhost=$host_identifier
580	break
581	fi
582	fi
583	done < tmp_mrun
584
585	if [[ "$localhost" = "" ]]
586	then
587	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
588	printf "\n for local host \"$localhost_realname\"."
589	printf "\n Please add line"
590	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
591	printf "\n to the configuration file."
592	locat=localhost; exit
593	fi
594
595
596	# HOSTSPEZIFISCHE VARIABLEN SETZEN
597	case $localhost_realname in
598	(r1\|r2\|h01\|b01) archive_system=tivoli;;
599	(cs*) archive_system=ut;;
600	(fimm.bccs.uib.no) fimm=true;;
601	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
602	(scirocco) scirocco=true;;
603	esac
604
605
606
607	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
608	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
609	[[ "$afname" = "" ]] && afname=$fname
610
611
612	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
613	if [[ "$run_mode" != "" ]]
614	then
615	input_list="$input_list $run_mode"
616	output_list="$output_list $run_mode"
617	fi
618
619
620	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
621	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
622	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
623	# STARTET)
624	if [[ "$fromhost" = "" ]]
625	then
626	fromhost=$localhost
627	fi
628
629
630	# PRUEFEN, OB MRUN NUR TESTWEISE AUF DER LOKALEN MASCHINE KOMPILIEREN SOLL
631	if [[ "$source_list" = LOCAL_COMPILE_TEST ]]
632	then
633	source_list=TEST
634	local_compile=true
635	host=$localhost
636	fi
637
638
639	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
640	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
641	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
642	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
643	if [[ -n $host && "$host" != $localhost ]]
644	then
645	do_batch=true
646	do_remote=true
647	case $host in
648	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|nech\|necriam\|lckyoto\|lcsgib\|lcsgih\|lctit\|unics\|lcxt4\|lcxt5m\|lck) true;;
649	(*) printf "\n"
650	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
651	printf "\n is not available"
652	locat=nqs; (( iec = 0 )); exit;;
653	esac
654	else
655	host=$localhost
656	fi
657
658
659	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
660	if [[ -n $additional_conditions ]]
661	then
662	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
663	cond1=`echo $additional_conditions \| cut -d" " -f1`
664	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
665	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
666	if [[ -n $dummy ]]
667	then
668	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
669	locat=options; exit
670	fi
671	fi
672
673
674	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
675	if [[ $run_coupled_model = true ]]
676	then
677
678	if [[ -n $coupled_dist ]]
679	then
680
681	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
682	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
683
684	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
685	then
686
687	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
688	printf "\n PEs (total) : $numprocs"
689	printf "\n PEs (atmosphere): $numprocs_atmos"
690	printf "\n PEs (ocean) : $numprocs_ocean"
691	locat=coupling; exit
692
693	# REARRANGING BECAUSE CURRENTLY ONLY 1:1 TOPOLOGIES ARE SUPPORTED
694	# THIS SHOULD BE REMOVED IN FUTURE
695	elif (( $numprocs_ocean != $numprocs_atmos ))
696	then
697
698	printf "\n +++ currently only 1:1 topologies are supported"
699	printf "\n PEs (total) : $numprocs"
700	printf "\n PEs (atmosphere): $numprocs_atmos"
701	printf "\n PEs (ocean) : $numprocs_ocean"
702	(( numprocs_atmos = $numprocs / 2 ))
703	(( numprocs_ocean = $numprocs / 2 ))
704	printf "\n +++ rearranged topology to $numprocs_atmos:$numprocs_ocean"
705
706	fi
707
708	else
709
710	(( numprocs_ocean = $numprocs / 2 ))
711	(( numprocs_atmos = $numprocs / 2 ))
712
713	fi
714	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
715
716	# GET coupled_mode FROM THE CONFIG FILE
717	line=""
718	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
719	while read line
720	do
721	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && ( $(echo $line \| cut -d" " -s -f4) = $cond1 \|\| $(echo $line \| cut -d" " -s -f4) = $cond2 ) ]]
722	then
723	coupled_mode="mpi2"
724	fi
725	done < tmp_mrun
726
727	fi
728
729
730	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
731	# ARCHIVIERUNG FEHLGESCHLAGEN IST
732	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
733	then
734	if [[ $ignore_archive_error = false ]]
735	then
736	printf "\n +++ data archiving of previous run failed"
737	printf "\n see directory \~/job_queue on remote machine"
738	locat=archive; exit
739	else
740	printf "\n +++ warning: data archiving in a previous run failed"
741	printf "\n MRUN continues, trying to get backup copy"
742	fi
743	fi
744
745
746
747	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
748	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
749	if [[ "$read_from_config" = false ]]
750	then
751
752	[[ $silent = false ]] && printf "\n Reading the configuration file... "
753	while read zeile
754	do
755	[[ $silent = false ]] && printf "."
756
757
758	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
759	# ERSETZEN
760	eval zeile=\"$zeile\"
761
762
763	# INTERPRETATION DER ZEILE
764	if [[ "$(echo $zeile)" = "" ]]
765	then
766	# LEERZEILE, KEINE AKTION
767	continue
768
769	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
770	then
771
772	# ZEILE IST KOMMENTARZEILE
773	true
774
775	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
776	then
777
778	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
779	zeile=$(echo $zeile \| cut -c2-)
780	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
781	var=`echo $zeile \| cut -d" " -f1`
782	value=`echo $zeile \| cut -d" " -s -f2`
783	for_host=`echo $zeile \| cut -d" " -s -f3`
784	for_cond1=`echo $zeile \| cut -d" " -s -f4`
785	for_cond2=`echo $zeile \| cut -d" " -s -f5`
786
787	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
788	then
789
790	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
791	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
792	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
793
794
795	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
796	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
797	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
798	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
799	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
800	# KONFIGURATIONSDATEI
801	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
802	then
803	eval $var=\$value
804
805	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
806	if [[ $do_trace = true ]]
807	then
808	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
809	fi
810	fi
811
812	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
813	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
814	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
815	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
816	if [[ $var = host ]]
817	then
818	if [[ -n $host && "$host" != $localhost ]]
819	then
820	do_batch=true
821	do_remote=true
822	case $host in
823	(ibm\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|lctit\|nech\|necriam\|unics\|lcxt4\|lcxt5m\|lck) true;;
824	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
825	printf "\n is not available"
826	locat=nqs; exit;;
827	esac
828	else
829	host=$localhost
830	fi
831	fi
832
833	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
834	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
835	# DEN PROGRAMMEN BENOETIGT WERDEN
836	export $var
837	fi
838
839
840
841
842	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
843	then
844
845	# ZEILE DEFINIERT ERROR-KOMMANDO
846	(( iec = iec + 1 ))
847	zeile=$(echo $zeile \| cut -c4-)
848	err_command[$iec]="$zeile"
849
850	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
851	then
852
853	# ZEILE DEFINIERT INPUT-KOMMANDO
854	(( iic = iic + 1 ))
855	zeile=$(echo $zeile \| cut -c4-)
856	in_command[$iic]="$zeile"
857
858	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
859	then
860
861	# ZEILE DEFINIERT OUTPUT-KOMMANDO
862	(( ioc = ioc + 1 ))
863	zeile=$(echo $zeile \| cut -c4-)
864	out_command[$ioc]="$zeile"
865
866	else
867
868	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
869	# s2a: in/out - Feld
870	# s2b: loc - Feld (optional)
871	# s2c: tr/ar - Feld (optional)
872	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
873	s1=`echo $zeile \| cut -d" " -f1`
874	s2=`echo $zeile \| cut -d" " -s -f2`
875	s2a=$(echo $s2 \| cut -d":" -f1)
876	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
877	then
878	s2b=""
879	s2c=""
880	else
881	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
882	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
883	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
884	fi
885	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
886	s3=`echo $zeile \| cut -d" " -f3`
887	s4=`echo $zeile \| cut -d" " -s -f4`
888	s5=`echo $zeile \| cut -d" " -s -f5`
889	s6=`echo $zeile \| cut -d" " -s -f6`
890
891
892	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
893	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
894	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
895	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
896	# HANDEN SEIN MUSS (D.H. s2b = loc)
897	IFSALT="$IFS"; IFS="$IFS:"
898	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
899	then
900	found=false
901	for actual in $input_list
902	do
903	for formal in $s3
904	do
905	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
906	done
907	done
908	if [[ $found = true ]]
909	then
910	(( iin = iin + 1 ))
911	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
912	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
913	extin[$iin]=$s6
914	fi
915	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
916	then
917	found=false
918	for actual in $output_list
919	do
920	for formal in $s3
921	do
922	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
923	done
924	done
925	if [[ $found = true ]]
926	then
927	(( iout = iout + 1 ))
928	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
929	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
930	fi
931	elif [[ "$s2a" != in && "$s2a" != out ]]
932	then
933	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
934	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
935	locat=connect; exit
936	fi
937	IFS="$IFSALT"
938	fi
939	done < $config_file
940
941	else
942
943
944	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
945	[[ $silent = false ]] && printf "..."
946	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
947	export interpreted_config_file=.icf.$RANDOM
948
949
950
951	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
952	# VERFUEGUNG STELLEN
953	cat > .mrun_environment << %%END%%
954	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
955	config_file = '$config_file', do_remote = '$do_remote',
956	do_trace = '$do_trace', host = '$host',
957	input_list = '$input_list', icf = '$interpreted_config_file',
958	localhost = '$localhost', output_list = '$output_list' /
959
960	%%END%%
961
962	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
963	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
964	mrun_memory=$memory
965	mrun_group_number=$group_number
966	mrun_cpumax=$cpumax
967	mrun_numprocs=$numprocs
968
969	if [[ $localhost_realname = "sx-fep" ]]
970	then
971	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
972	else
973	interpret_config.x
974	fi
975	rm .mrun_environment
976
977
978	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
979	chmod u+x $interpreted_config_file
980	export PATH=$PATH:.
981	. $interpreted_config_file
982	rm $interpreted_config_file
983
984
985	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
986	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
987	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
988	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
989	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
990
991	fi
992
993
994	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
995	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
996	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
997	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
998	if [[ "$SOURCES_COMPLETE" = "" ]]
999	then
1000
1001	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
1002	# VEREINBART WURDE
1003	source_path=""
1004	line=""
1005	grep "%source_path" $config_file > tmp_mrun
1006	while read line
1007	do
1008	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1009	then
1010	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
1011	then
1012	global_source_path=`echo $line \| cut -d" " -f2`
1013	fi
1014	fi
1015	done < tmp_mrun
1016
1017	line=""
1018	found=false
1019	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
1020	while read line
1021	do
1022	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1023	then
1024	if [[ $found = true ]]
1025	then
1026	printf "\n\n +++ more than one source path found in configuration file"
1027	printf "\n for local host \"$localhost\" "
1028	locat=source_path; exit
1029	fi
1030	source_path=`echo $line \| cut -d" " -f2`
1031	found=true
1032	fi
1033	done < tmp_mrun
1034	rm tmp_mrun
1035
1036	if [[ "$source_path" = "" ]]
1037	then
1038	if [[ "$global_source_path" != "" ]]
1039	then
1040	source_path=$global_source_path
1041	else
1042	printf "\n\n +++ no source path found in configuration file"
1043	printf "\n for local host \"$localhost\" "
1044	locat=source_path; exit
1045	fi
1046	fi
1047	eval source_path=$source_path
1048
1049	if [[ ! -d $source_path ]]
1050	then
1051	printf "\n\n +++ source path \"$source_path\" on local host"
1052	printf "\n \"$localhost\" does not exist"
1053	locat=source_path; exit
1054	fi
1055
1056	fi
1057
1058
1059	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
1060	# DURCH OPTION -G MITGETEILT)
1061	if [[ "$global_revision" = "" ]]
1062	then
1063	global_revision=`svnversion $source_path 2>/dev/null`
1064	global_revision="Rev: $global_revision"
1065	fi
1066
1067
1068	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
1069	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
1070	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
1071	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
1072	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
1073	if [[ -n $host && "$host" != $localhost ]]
1074	then
1075	do_batch=true
1076	do_remote=true
1077	case $host in
1078	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|lctit\|nech\|necriam\|unics\|lcxt4\|lcxt5m\|lck) true;;
1079	(*) printf "\n"
1080	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
1081	printf "\n is not available"
1082	locat=nqs; (( iec = 0 )); exit;;
1083	esac
1084	else
1085	host=$localhost
1086	fi
1087
1088
1089	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
1090	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1091	then
1092
1093	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
1094	if [[ ! -n $numprocs ]]
1095	then
1096	printf "\n"
1097	printf "\n +++ option \"-K parallel\" requires additional specification"
1098	printf "\n of the number of processors to be used by"
1099	printf "\n mrun-option \"-X\" or by environment-variable"
1100	printf "\n \"numprocs\" in the configuration file"
1101	locat=numprocs; (( iec = 0 )); exit
1102	fi
1103
1104	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
1105	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
1106	# GESAMTPROZESSORANZAHL IST
1107	if [[ $host = nech \|\| $host = necriam \|\| $host = ibmh \|\| $host = ibmb \|\| $host = ibms ]]
1108	then
1109	[[ "$tasks_per_node" = "" ]] && tasks_per_node=6
1110	(( ival = $tasks_per_node ))
1111	(( pes = numprocs ))
1112	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1113	# then
1114	# (( pes = pes - 1 ))
1115	# fi
1116	(( ii = pes / ival ))
1117	if (( pes - ii * ival > 0 ))
1118	then
1119	printf "\n"
1120	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1121	printf "\n divisor of the total number of processors (option \"-X\")"
1122	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1123	locat=tasks_per_node; (( iec = 0 )); exit
1124	fi
1125	fi
1126
1127	# IBMY HAT NUR EINEN KNOTEN
1128	if [[ $host = ibmy ]]
1129	then
1130	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1131	then
1132	printf "\n"
1133	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1134	printf "\n total number of processors (option \"-X\")"
1135	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1136	locat=tasks_per_node; (( iec = 0 )); exit
1137	fi
1138	fi
1139
1140	# FALLS OPENMP PARALLELISIERUNG VERWENDET WERDEN SOLL, ANZAHL VON THREADS
1141	# SETZEN UND ZAHL DER TASKS PRO KNOTEN AUF 1 SETZEN
1142	if [[ $use_openmp = true ]]
1143	then
1144	threads_per_task=$tasks_per_node
1145	tasks_per_node=1
1146	fi
1147
1148	# SETTINGS FOR SUBJOB-COMMAND
1149	if [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1150	then
1151	(( tp1 = tasks_per_node * threads_per_task ))
1152	TOPT="-T $tp1"
1153	else
1154	TOPT="-T $tasks_per_node"
1155	fi
1156	OOPT="-O $threads_per_task"
1157
1158	# GESAMTZAHL DER KNOTEN BESTIMMEN
1159	if [[ "$tasks_per_node" != "" ]]
1160	then
1161	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1162	fi
1163
1164	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1165	# SETZEN
1166	if [[ $node_usage = default ]]
1167	then
1168	if [[ $host = ibms ]]
1169	then
1170	node_usage=shared
1171	elif [[ $host = lctit ]]
1172	then
1173	node_usage=RAM64GB
1174	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1175	then
1176	node_usage=singlejob
1177	else
1178	node_usage=not_shared
1179	fi
1180	fi
1181
1182	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != RAM64GB ]]
1183	then
1184	printf "\n"
1185	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1186	printf "\n \"shared\" or \"not_shared\""
1187	locat=tasks_per_node; (( iec = 0 )); exit
1188	fi
1189
1190	fi
1191
1192	# PRUEFEN, OB HOSTFILE EXISTIERT
1193	if [[ -n $hostfile ]]
1194	then
1195	if [[ ! -f $hostfile ]]
1196	then
1197	printf "\n"
1198	printf "\n +++ hostfile \"$hostfile\" does not exist"
1199	locat=hostfile; exit
1200	fi
1201	fi
1202
1203	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1204	if [[ $host = ibmy && $do_remote = false ]]
1205	then
1206	if [[ ! -f $HOME/.rhosts ]]
1207	then
1208	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1209	printf "\n\n *** file:"
1210	printf "\n $HOME/.rhosts"
1211	printf "\n was created\n"
1212	fi
1213	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1214	then
1215	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1216	printf "\n\n *** file:"
1217	printf "\n $HOME/.rhosts"
1218	printf "\n was extended by the name of the current host\n"
1219	fi
1220	fi
1221
1222
1223
1224	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1225	if [[ $queue = none ]]
1226	then
1227	case $host in
1228	(ibmb) if [[ $node_usage = shared ]]
1229	then
1230	queue=cshare
1231	else
1232	queue=csolo
1233	fi;;
1234	(ibmh) queue=no_class;;
1235	(ibmy) queue=parallel;;
1236	(lckyoto) queue=ph;;
1237	(lcsgib) queue=bigq;;
1238	(lcsgih) queue=bigq;;
1239	(lctit) queue=RAM64GB;;
1240	(nech) queue=none;;
1241	(necriam) queue=SP;;
1242	(unics) queue=unics;;
1243	esac
1244	fi
1245
1246
1247	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1248	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1249	# ERMITTELN
1250	(( i = 0 ))
1251	while (( i < iin ))
1252	do
1253	(( i = i + 1 ))
1254	(( maxcycle = 0 ))
1255
1256	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1257	if [[ "${actionin[$i]}" = di ]]
1258	then
1259	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1260	# REM-MASCHINE AUSWERTEN
1261	eval filename=${pathin[$i]}/${endin[$i]}
1262	else
1263	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1264	# REM-MASCHINE AUSWERTEN
1265	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1266	fi
1267
1268	# PRUEFEN AUF VORHANDENSEIN
1269	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1270	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1271	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1272	then
1273	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1274	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1275	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1276	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1277	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1278	if [[ "${transin[$i]}" != "locopt" ]]
1279	then
1280	printf "\n\n +++ INPUT-file: "
1281	if [[ "${extin[$i]}" = "" ]]
1282	then
1283	printf "\n $filename"
1284	else
1285	printf "\n $filename.${extin[$i]}"
1286	fi
1287	printf "\n does not exist\n"
1288	locat=input; exit
1289	else
1290	transin[$i]="unavailable"
1291	fi
1292	else
1293
1294	# ZYKLUSNUMMER FESTSTELLEN
1295	ls -1 -d $filename > filelist 2>/dev/null
1296	ls -1 -d $filename.* >> filelist 2>/dev/null
1297	while read zeile
1298	do
1299	cycle=$(print $zeile \| cut -f2 -d".")
1300	if [[ "$cycle" = "$zeile" ]]
1301	then
1302	(( icycle = 0 ))
1303	elif [[ "$cycle" = "${extin[$i]}" ]]
1304	then
1305	(( icycle = 0 ))
1306	else
1307	(( icycle = $cycle ))
1308	fi
1309	if (( icycle > maxcycle ))
1310	then
1311	(( maxcycle = icycle ))
1312	file_to_be_used=$zeile
1313	fi
1314	done <filelist
1315	rm filelist
1316
1317	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1318	if (( maxcycle > 0 ))
1319	then
1320	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1321	then
1322	filename=${filename}.$maxcycle.${extin[$i]}
1323	else
1324	filename=${filename}.$maxcycle
1325	fi
1326	else
1327	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1328	then
1329	filename=${filename}.${extin[$i]}
1330	fi
1331	fi
1332
1333	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1334	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1335	absnamein[$i]=$filename
1336	if (( maxcycle > 0 ))
1337	then
1338	if [[ "${actionin[$i]}" = di ]]
1339	then
1340	frelin[$i]=${endin[$i]}.$maxcycle
1341	else
1342	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1343	fi
1344	else
1345	if [[ "${actionin[$i]}" = di ]]
1346	then
1347	frelin[$i]=${endin[$i]}
1348	else
1349	frelin[$i]=${afname}${endin[$i]}
1350	fi
1351	fi
1352
1353	fi
1354	done
1355
1356
1357	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1358	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1359	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1360	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1361	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1362	(( i = 0 ))
1363	while (( i < iout ))
1364	do
1365	(( i = i + 1 ))
1366	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1367	then
1368	if [[ "${actionout[$i]}" = tr ]]
1369	then
1370	actionout[$i]=""
1371	elif [[ "${actionout[$i]}" = trpe ]]
1372	then
1373	actionout[$i]=pe
1374	elif [[ "${actionout[$i]}" = tra ]]
1375	then
1376	actionout[$i]=a
1377	fi
1378	(( maxcycle = 0 ))
1379	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1380	eval catalogname=${pathout[$i]}
1381	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1382	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1383	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1384	then
1385
1386	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1387	if cat /dev/null > $filename
1388	then
1389	rm $filename
1390	else
1391
1392	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1393	if [[ ! -d $catalogname ]]
1394	then
1395	if mkdir -p $catalogname
1396	then
1397	printf "\n\n *** directory:"
1398	printf "\n $catalogname"
1399	printf "\n was created\n"
1400	else
1401	printf "\n\n +++ OUTPUT-file:"
1402	printf "\n $filename"
1403	printf "\n cannot be created, because directory does not exist"
1404	printf "\n and cannot be created either"
1405	printf "\n"
1406	locat=output ; exit
1407	fi 2>/dev/null
1408	else
1409	printf "\n\n +++ OUTPUT-file:"
1410	printf "\n $filename"
1411	printf "\n cannot be created, although directory exists"
1412	printf "\n"
1413	locat=output ; exit
1414	fi
1415	fi 2>/dev/null
1416	else
1417
1418	# ZYKLUSNUMMER FESTSTELLEN
1419	ls -1 -d $filename > filelist 2>/dev/null
1420	ls -1 -d $filename.* >> filelist 2>/dev/null
1421	while read zeile
1422	do
1423	cycle=$(print $zeile \| cut -f2 -d".")
1424	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1425	then
1426	(( icycle = 1 ))
1427	else
1428	(( icycle = $cycle + 1 ))
1429	fi
1430	if (( icycle > maxcycle ))
1431	then
1432	(( maxcycle = icycle ))
1433	fi
1434	done <filelist
1435	rm filelist
1436	fi
1437
1438	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1439	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1440	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1441	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1442	if [[ "${actionout[$i]}" != a ]]
1443	then
1444	if (( maxcycle > 0 ))
1445	then
1446	filename=${filename}.$maxcycle
1447	if cat /dev/null > $filename
1448	then
1449	rm $filename
1450	else
1451	printf "\n +++ OUTPUT-file:"
1452	printf "\n $filename"
1453	printf "\n cannot be created"
1454	locat=output ; exit
1455	fi
1456	fi
1457	else
1458	(( maxcycle = maxcycle - 1 ))
1459	if (( maxcycle > 0 ))
1460	then
1461	filename=${filename}.$maxcycle
1462	fi
1463	fi
1464
1465	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1466	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1467	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1468	pathout[$i]=$filename
1469	if (( maxcycle > 0 ))
1470	then
1471	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1472	else
1473	frelout[$i]=${fname}${endout[$i]}
1474	fi
1475
1476	fi
1477	done
1478
1479
1480	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1481	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1482	then
1483	if [[ "$dvr_inc" = "" ]]
1484	then
1485	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1486	printf "\n This is required for the dvrp_graphics package.\n"
1487	locat=dvr; exit
1488	fi
1489	if [[ "$dvr_lib" = "" ]]
1490	then
1491	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1492	printf "\n This is required for the dvrp_graphics package.\n"
1493	locat=dvr; exit
1494	fi
1495	fi
1496
1497
1498	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1499	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1500	# UEBERSETZT ZU WERDEN)
1501	if [[ "$mainprog" = "" && "$executable" = "" ]]
1502	then
1503	printf "\n +++ neither main program nor executable defined"
1504	locat=source; exit
1505	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1506	then
1507	printf "\n +++ main program as well as executable defined"
1508	locat=source; exit
1509	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1510	then
1511	do_compile=false
1512	fi
1513
1514
1515	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1516	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1517	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1518	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1519	then
1520	rm -rf SOURCES_FOR_RUN_$fname
1521	mkdir SOURCES_FOR_RUN_$fname
1522	fi
1523
1524
1525	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1526	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1527	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1528	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1529	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1530	then
1531
1532	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1533	[[ "$source_list" = WP ]] && source_list=WRITE_PERMIT
1534
1535
1536	# EVTL. ZU UEBERSETZENDE PROGRAMMTEILE DADURCH BESTIMMEN, DASS GEPRUEFT
1537	# WIRD, WELCHE DATEIEN WRITE-PERMIT BESITZEN (DATEIEN SOLLTEN DESHALB
1538	# UNTER RCS-KONTROLLE STEHEN). MIT DER VARIABLEN EXCLUDE KOENNEN
1539	# BESTIMMTE DATEIEN GRUNDSAETZLICH VON DER UEBERSETZUNG AUSGESCHLOSSEN
1540	# WERDEN. DIES IST NUR BEI MANUELLEM START VON MRUN DURCH DEN BENUTZER
1541	# MOEGLICH, DA BEI AUTOMATISCHEN RESTARTS TEST DURCH DIE TATSAECHLICH
1542	# ZU UBERSETZENDEN DATEIEN ERSETZT IST.
1543	# ALLE ERMITTELTEN DATEIEN WERDEN IM VERZEICHNIS SOURCES_FOR_RUN_...
1544	# GESAMMELT
1545	if [[ "$source_list" = WRITE_PERMIT ]]
1546	then
1547
1548	source_list=""
1549	cd $source_path
1550
1551
1552	# ALLE MOEGLICHEN QUELLCODEDATEIEN AUFLISTEN
1553	Names=$(ls -1 *.f90 2>&1)
1554	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && Filenames="$Names"
1555	Names=$(ls -1 *.F90 2>&1)
1556	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && Filenames="$Filenames $Names"
1557	Names=$(ls -1 *.F 2>&1)
1558	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && Filenames="$Filenames $Names"
1559	Names=$(ls -1 *.f 2>&1)
1560	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && Filenames="$Filenames $Names"
1561	Names=$(ls -1 *.c 2>&1)
1562	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && Filenames="$Filenames $Names"
1563
1564
1565	# DATEIEN MIT WRITE-PERMIT NACH SOURCES_FOR_RUN_... KOPIEREN
1566	for dateiname in $Filenames
1567	do
1568	if [[ -w $dateiname ]]
1569	then
1570	if [[ "$exclude" = "" \|\| $(echo $exclude \| grep -c $dateiname) = 0 ]]
1571	then
1572	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1573	source_list=$source_list"$dateiname "
1574	fi
1575	fi
1576	done
1577
1578	cd - > /dev/null
1579
1580
1581	elif [[ "$source_list" = LOCALLY_MODIFIED ]]
1582	then
1583
1584	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1585	source_list=""
1586	cd $source_path
1587
1588
1589	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1590	if [[ ! -d .svn ]]
1591	then
1592	printf "\n\n +++ source directory"
1593	printf "\n \"$source_path\" "
1594	printf "\n is not under control of \"subversion\"."
1595	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1596	fi
1597
1598
1599	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1600	Filenames=""
1601	svn status > tmp_mrun
1602	while read line
1603	do
1604	firstc=`echo $line \| cut -c1`
1605	if [[ $firstc = M \|\| $firstc = "?" ]]
1606	then
1607	Name=`echo "$line" \| cut -c8-`
1608	extension=`echo $Name \| cut -d. -f2`
1609	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1610	then
1611	Filenames="$Filenames "$Name
1612	fi
1613	fi
1614	done < tmp_mrun
1615
1616
1617	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1618	for dateiname in $Filenames
1619	do
1620	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1621	source_list=$source_list"$dateiname "
1622	done
1623
1624	cd - > /dev/null
1625
1626
1627	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1628	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1629	# VORHANDEN
1630	elif [[ "$source_list" != "" && $restart_run != true ]]
1631	then
1632
1633	cd $source_path
1634
1635	for filename in $source_list
1636	do
1637
1638	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1639	if [[ $(print $filename \| grep -c "/") != 0 ]]
1640	then
1641	printf "\n +++ source code file: $filename"
1642	printf "\n must not contain (\"/\") "
1643	locat=source; exit
1644	fi
1645
1646	if [[ ! -f $filename ]]
1647	then
1648	printf "\n +++ source code file: $filename"
1649	printf "\n does not exist"
1650	locat=source; exit
1651	else
1652	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1653	fi
1654
1655	done
1656
1657	cd - > /dev/null
1658
1659	fi
1660
1661
1662	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1663	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1664	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1665	if [[ $restart_run != true ]]
1666	then
1667
1668	if [[ ! -f "$source_path/$mainprog" ]]
1669	then
1670	printf "\n\n +++ main program: $mainprog"
1671	printf "\n does not exist in source directory"
1672	printf "\n \"$source_path\"\n"
1673	locat=source; exit
1674	else
1675	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1676	then
1677	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1678	source_list=${mainprog}" $source_list"
1679	fi
1680	fi
1681	fi
1682
1683
1684	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1685	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1686	if [[ "$restart_run" != true ]]
1687	then
1688	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1689	if [[ ! -f $makefile ]]
1690	then
1691	printf "\n +++ file \"$makefile\" does not exist"
1692	locat=make; exit
1693	else
1694	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1695	fi
1696	fi
1697
1698
1699	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1700	if [[ $restart_run != true && "$add_source_path" != "" ]]
1701	then
1702
1703	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1704	if [[ ! -d $add_source_path ]]
1705	then
1706	printf "\n\n +++ WARNING: additional source code directory"
1707	printf "\n \"$add_source_path\" "
1708	printf "\n does not exist or is not a directory."
1709	printf "\n No source code will be used from this directory!\n"
1710	add_source_path=""
1711	sleep 3
1712	else
1713
1714	cd $add_source_path
1715	found=false
1716
1717	Names=$(ls -1 *.f90 2>&1)
1718	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1719	Names=$(ls -1 *.F90 2>&1)
1720	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1721	Names=$(ls -1 *.F 2>&1)
1722	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1723	Names=$(ls -1 *.f 2>&1)
1724	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1725	Names=$(ls -1 *.c 2>&1)
1726	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1727
1728	cd - > /dev/null
1729	cd SOURCES_FOR_RUN_$fname
1730
1731	# COPY MAKEFILE IF EXISTING
1732	if [[ -f $add_source_path/Makefile ]]
1733	then
1734	printf "\n\n *** user Makefile from directory"
1735	printf "\n \"$add_source_path\" is used \n"
1736	sleep 1
1737	cp $add_source_path/Makefile .
1738	fi
1739
1740	for dateiname in $AddFilenames
1741	do
1742	if [[ -f $dateiname ]]
1743	then
1744	printf "\n +++ source code file \"$dateiname\" found in additional"
1745	printf "\n source code directory \"$add_source_path\" "
1746	printf "\n but was also given with option \"-s\" which means that it should be taken"
1747	printf "\n from directory \"$source_path\"."
1748	locat=source; exit
1749	fi
1750
1751	cp $add_source_path/$dateiname .
1752	source_list="$source_list $dateiname"
1753
1754	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1755	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1756	then
1757	printf "\n\n +++ user file \"$dateiname\" "
1758	printf "\n is not listed in Makefile \n"
1759	locat=source; exit
1760	else
1761
1762	# Default User-Interface von der Liste entfernen, falls Datei
1763	# ein User-Interface enthaelt
1764	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1765	# then
1766	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1767	# then
1768	# rm -rf user_interface.f90
1769	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1770	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1771	# printf "\n since a user-interface is found in file"
1772	# printf "\n \"$add_source_path/$dateiname\" \n"
1773	# sleep 3
1774	# else
1775	if [[ $found = false ]]
1776	then
1777	found=true
1778	printf "\n\n *** following user file(s) added to the"
1779	printf " files to be translated:\n "
1780	fi
1781	printf "$dateiname "
1782	sleep 0.5
1783	fi
1784	done
1785	[[ $found = true ]] && printf "\n"
1786	cd - > /dev/null
1787	fi
1788	fi
1789
1790
1791	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1792	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1793	if [[ $restart_run != true && -n $package_list ]]
1794	then
1795
1796	cd $source_path
1797
1798	for package in $package_list
1799	do
1800
1801	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1802
1803	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1804	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1805	# LIEFERT
1806	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1807
1808
1809	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1810	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1811	for source_list_name in $package_source_list
1812	do
1813	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1814	then
1815
1816	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1817	ending=`echo $source_list_name \| cut -f2 -d.`
1818	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1819	then
1820	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1821	source_list="$source_list $source_list_name"
1822	fi
1823	fi
1824	done
1825	done
1826
1827	cd - > /dev/null
1828	fi
1829
1830
1831	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1832	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1833	# if [[ "$restart_run" != true ]]
1834	# then
1835	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1836	# if [[ ! -f $makefile ]]
1837	# then
1838	# printf "\n +++ file \"$makefile\" does not exist"
1839	# locat=make; exit
1840	# else
1841	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1842	# fi
1843	# fi
1844
1845	fi # do_compile=true
1846
1847
1848	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1849	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1850	if [[ $do_compile = true ]]
1851	then
1852
1853	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1854	# ZUSAMMENSETZEN
1855	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1856	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1857	then
1858	cpp_options="${cpp_options},-D__ibm=__ibm"
1859	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1860	then
1861	cpp_options="$cpp_options -D__nec"
1862	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1863	then
1864	cpp_options="$cpp_options -D__lc"
1865	else
1866	cpp_options="$cpp_options -D__$localhost"
1867	fi
1868
1869	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1870	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1871	then
1872	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1873	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1874	else
1875	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1876	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1877	fi
1878
1879	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1880	if [[ -n $package_list ]]
1881	then
1882	for package in $package_list
1883	do
1884	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1885	then
1886	if [[ $package != "dvrp_graphics+1PE" ]]
1887	then
1888	cpp_options="${cpp_options},-D__$package=__$package"
1889	else
1890	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1891	export use_seperate_pe_for_dvrp_output=true
1892	fi
1893	else
1894	if [[ $package != "dvrp_graphics+1PE" ]]
1895	then
1896	cpp_options="$cpp_options -D__$package"
1897	else
1898	cpp_options="$cpp_options -D__dvrp_graphics"
1899	export use_seperate_pe_for_dvrp_output=true
1900	fi
1901	fi
1902	done
1903	fi
1904
1905	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1906	if [[ -n $cpp_opts ]]
1907	then
1908	for popts in $cpp_opts
1909	do
1910	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1911	then
1912	cpp_options="${cpp_options},-D__$popts=__$popts"
1913	else
1914	cpp_options="$cpp_options -D__$popts"
1915	fi
1916	done
1917	fi
1918
1919	else
1920
1921
1922	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1923	if [[ $do_remote = false ]]
1924	then
1925	if [[ ! -f $executable ]]
1926	then
1927	printf "\n +++ executable file: $executable"
1928	printf "\n does not exist"
1929	locat=executable; exit
1930	fi
1931	fi
1932	fi
1933
1934
1935	# JOBMODUS FESTSTELLEN
1936	if [[ "$ENVIRONMENT" = BATCH && $localhost != lctit \|\| "$QUEUE" != interactive && $localhost = lctit ]]
1937	then
1938	jobmo=BATCH
1939	else
1940	jobmo=INTERACTIVE
1941	fi
1942
1943
1944	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1945	# DURCH BENUTZER ANDERWEITIG VEREINBART
1946	if [[ "$compiler_name" = "" ]]
1947	then
1948
1949	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
1950	locat=compiler_name; exit
1951
1952	fi
1953
1954
1955	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
1956	[[ $localhost = necriam ]] && compiler_name=mpif90
1957
1958
1959
1960	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
1961	kennung=$RANDOM
1962	if [[ "$tmp_user_catalog" = "" ]]
1963	then
1964	if [[ $localhost = ibmh ]]
1965	then
1966	tmp_user_catalog=$SCRATCH
1967	elif [[ $localhost = nech ]]
1968	then
1969	tmp_user_catalog=$WRKSHR
1970	else
1971	tmp_user_catalog=/tmp
1972	fi
1973	fi
1974	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
1975
1976
1977	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
1978	# BESTIMMEN
1979	if [[ "$tmp_data_catalog" = "" ]]
1980	then
1981	if [[ $localhost = ibmb ]]
1982	then
1983	tmp_data_catalog=$WORK/mrun_restart_data
1984	elif [[ $localhost = nech ]]
1985	then
1986	tmp_data_catalog=$WRKSHR/mrun_restart_data
1987	else
1988	tmp_data_catalog=/tmp/mrun_restart_data
1989	fi
1990	fi
1991
1992
1993	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
1994	# ERSETZEN
1995	if [[ $do_remote = false && $do_compile = true ]]
1996	then
1997	eval fopts=\"$fopts\"
1998	eval lopts=\"$lopts\"
1999	fi
2000
2001
2002
2003	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
2004	fopts="$fopts $netcdf_inc $dvr_inc"
2005	lopts="$lopts $netcdf_lib $dvr_lib"
2006	ROPTS="$ropts"
2007	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxt4 \|\| $host = lcxt5m \|\| $host = lck ) && -n $numprocs ]]
2008	then
2009	XOPT="-X $numprocs"
2010	fi
2011
2012
2013
2014	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
2015	# GRAMM BENOETIGT
2016	done=false
2017	while [[ $done = false ]]
2018	do
2019	cputime=$cpumax
2020	if (( $cputime == 0 ))
2021	then
2022	if [[ $do_batch = true ]]
2023	then
2024	printf "\n +++ cpu-time is undefined"
2025	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
2026	printf "\n >>> "
2027	read cputime 1>/dev/null 2>&1
2028	else
2029	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
2030	fi
2031	else
2032	done=true
2033	fi
2034	cpumax=$cputime
2035	done
2036
2037	(( minuten = cputime / 60 ))
2038	(( sekunden = cputime - minuten * 60 ))
2039
2040
2041	# PRUEFEN DER KERNSPEICHERANFORDERUNG
2042	if [[ $do_batch = true ]]
2043	then
2044	done=false
2045	while [[ $done = false ]]
2046	do
2047	if (( memory == 0 ))
2048	then
2049	printf "\n +++ memory demand is undefined"
2050	printf "\n >>> Please type memory in MByte per process as INTEGER:"
2051	printf "\n >>> "
2052	read memory 1>/dev/null 2>&1
2053	else
2054	done=true
2055	fi
2056	done
2057	fi
2058
2059
2060	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
2061	if [[ $do_remote = true && -z $remote_username ]]
2062	then
2063	while [[ -z $remote_username ]]
2064	do
2065	printf "\n +++ username on remote host \"$host\" is undefined"
2066	printf "\n >>> Please type username:"
2067	printf "\n >>> "
2068	read remote_username
2069	done
2070	mc="$mc -u$remote_username"
2071	fi
2072
2073
2074	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
2075	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2076	then
2077	[[ "$mpilib" = "" ]] && export mpilib=mpt
2078	fi
2079
2080
2081
2082	###########################################################################
2083	# HEADER-AUSGABE
2084	###########################################################################
2085
2086
2087	calltime=$(date)
2088	printf "\n"
2089	# [[ $silent = false ]] && clear
2090	printf "#--------------------------------------------------------------# \n"
2091	printf "\| $version$calltime \| \n"
2092	printf "\| \| \n"
2093	spalte1="called on:"; spalte2=$localhost_realname
2094	printf "\| $spalte1$spalte2 \| \n"
2095	if [[ $local_compile = false ]]
2096	then
2097	if [[ $do_remote = true ]]
2098	then
2099	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2100	else
2101	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2102	fi
2103	else
2104	spalte1="compiling test only!"; spalte2=""
2105	fi
2106	printf "\| $spalte1$spalte2 \| \n"
2107	if [[ -n $numprocs ]]
2108	then
2109	spalte1="number of PEs:"; spalte2=$numprocs
2110	printf "\| $spalte1$spalte2 \| \n"
2111	fi
2112	if [[ -n $tasks_per_node ]]
2113	then
2114	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2115	printf "\| $spalte1$spalte2 \| \n"
2116	fi
2117	if [[ $threads_per_task != 1 ]]
2118	then
2119	spalte1="threads per task:"; spalte2="$threads_per_task"
2120	printf "\| $spalte1$spalte2 \| \n"
2121	fi
2122	printf "\| \| \n"
2123	if [[ $do_compile = true ]]
2124	then
2125	if [[ "$mopts" != "" ]]
2126	then
2127	spalte1=make-options:; spalte2=$mopts
2128	printf "\| $spalte1$spalte2 \| \n"
2129	zeile=$(echo "$mopts" \| cut -c41-)
2130	while [[ "$zeile" != "" ]]
2131	do
2132	spalte1=""
2133	spalte2=$zeile
2134	printf "\| $spalte1$spalte2 \| \n"
2135	zeile=$(echo "$zeile" \| cut -c41-)
2136	done
2137	fi
2138
2139	spalte1=cpp-directives:; spalte2=$cpp_options
2140	printf "\| $spalte1$spalte2 \| \n"
2141	zeile=$(echo "$cpp_options" \| cut -c41-)
2142	while [[ "$zeile" != "" ]]
2143	do
2144	spalte1=""
2145	spalte2=$zeile
2146	printf "\| $spalte1$spalte2 \| \n"
2147	zeile=$(echo "$zeile" \| cut -c41-)
2148	done
2149
2150	spalte1=compiler-options:; spalte2="$fopts"
2151	printf "\| $spalte1$spalte2 \| \n"
2152	zeile=$(echo "$fopts" \| cut -c41-)
2153	while [[ "$zeile" != "" ]]
2154	do
2155	spalte1=""
2156	spalte2=$zeile
2157	printf "\| $spalte1$spalte2 \| \n"
2158	zeile=$(echo "$zeile" \| cut -c41-)
2159	done
2160
2161	spalte1=linker-options:; spalte2=$lopts
2162	printf "\| $spalte1$spalte2 \| \n"
2163	zeile=$(echo "$lopts" \| cut -c41-)
2164	while [[ "$zeile" != "" ]]
2165	do
2166	spalte1=""
2167	spalte2=$zeile
2168	printf "\| $spalte1$spalte2 \| \n"
2169	zeile=$(echo "$zeile" \| cut -c41-)
2170	done
2171
2172	spalte1="main program":; spalte2=$mainprog
2173	printf "\| $spalte1$spalte2 \| \n"
2174	else
2175	spalte1=executable:; spalte2=$executable
2176	printf "\| $spalte1$spalte2 \| \n"
2177	fi
2178	printf "\| \| \n"
2179	spalte1="base name of files":; spalte2=$fname
2180	printf "\| $spalte1$spalte2 \| \n"
2181	if [[ $fname != $afname ]]
2182	then
2183	spalte1="base name of input files":; spalte2=$afname
2184	printf "\| $spalte1$spalte2 \| \n"
2185	fi
2186	spalte1="INPUT control list":; spalte2=$input_list
2187	printf "\| $spalte1$spalte2 \| \n"
2188	spalte1="OUTPUT control list":; spalte2=$output_list
2189	printf "\| $spalte1$spalte2 \| \n"
2190
2191	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2192	then
2193	spalte1="memory demand / PE":; spalte2="$memory MB"
2194	printf "\| $spalte1$spalte2 \| \n"
2195	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2196	printf "\| $spalte1$spalte2 \| \n"
2197	fi
2198
2199	if [[ $do_compile = true ]]
2200	then
2201	printf "\| \| \n"
2202	printf "\| Files to be compiled: \| \n"
2203	zeile=$source_list
2204	while [[ "$zeile" != "" ]]
2205	do
2206	spalte3=$zeile
2207	printf "\| $spalte3 \| \n"
2208	zeile=$(echo "$zeile" \| cut -c61-)
2209	done
2210	fi
2211	printf "#--------------------------------------------------------------#"
2212
2213
2214
2215	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2216	if [[ $do_trace = true ]]
2217	then
2218	(( i = 0 ))
2219	while (( i < iin ))
2220	do
2221	(( i = i + 1 ))
2222	if (( i == 1 ))
2223	then
2224	printf "\n\n >>> INPUT-file assignments:\n"
2225	fi
2226	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2227	done
2228	(( i = 0 ))
2229	while (( i < iout ))
2230	do
2231	(( i = i + 1 ))
2232	if (( i == 1 ))
2233	then
2234	printf "\n\n >>> OUTPUT-file assignments:\n"
2235	fi
2236	printf "\n ${localout[$i]} : ${pathout[$i]}"
2237	done
2238	(( i = 0 ))
2239	while (( i < iic ))
2240	do
2241	(( i = i + 1 ))
2242	if (( i == 1 ))
2243	then
2244	printf "\n\n >>> INPUT-commands:\n"
2245	fi
2246	printf "\n ${in_command[$i]}"
2247	done
2248	(( i = 0 ))
2249	while (( i < ioc ))
2250	do
2251	(( i = i + 1 ))
2252	if (( i == 1 ))
2253	then
2254	printf "\n\n >>> OUTPUT-commands:\n"
2255	fi
2256	printf "\n ${out_command[$i]}"
2257	done
2258	fi
2259
2260
2261	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2262	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2263	then
2264	antwort=dummy
2265	printf "\n\n"
2266	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2267	do
2268	printf " >>> everything o.k. (y/n) ? "
2269	read antwort
2270	done
2271	if [[ $antwort = n \|\| $antwort = N ]]
2272	then
2273	locat=user_abort; (( iec = 0 )); exit
2274	fi
2275	if [[ $do_batch = true ]]
2276	then
2277	printf " >>> batch-job will be created and submitted"
2278	else
2279	if [[ $local_compile = false ]]
2280	then
2281	printf " >>> MRUN will now continue to execute on this machine"
2282	else
2283	printf " >>> a test compilation will now be carried out on this machine"
2284	fi
2285	fi
2286	fi
2287
2288
2289
2290
2291	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2292	# CHENDE AKTIONEN DURCHGEFUEHRT
2293	if [[ $do_batch = false ]]
2294	then
2295
2296
2297	# TEMPORAEREN KATALOG ERZEUGEN
2298	mkdir -p $TEMPDIR
2299	chmod go+rx $TEMPDIR
2300	tmpcreate=true
2301
2302
2303	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2304	# TEMPORAERES VERZEICHNIS KOPIEREN
2305	if [[ $do_compile = true ]]
2306	then
2307
2308	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2309	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2310	if [[ $localhost = nech ]]
2311	then
2312	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2313	if mkdir -p $TEMPDIR_COMPILE
2314	then
2315	printf "\n *** \"$TEMPDIR_COMPILE\" "
2316	printf "\n is generated as temporary directory for cross compiling\n"
2317	else
2318	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2319	printf "\n needed for cross compilation failed"
2320	locat=compile
2321	exit
2322	fi
2323	else
2324	TEMPDIR_COMPILE=$TEMPDIR
2325	fi
2326
2327
2328	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2329	line=""
2330	grep "%depository_path" $config_file > tmp_mrun
2331	while read line
2332	do
2333	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2334	then
2335	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2336	then
2337	global_depository_path=`echo $line \| cut -d" " -s -f2`
2338	fi
2339	fi
2340	done < tmp_mrun
2341
2342	line=""
2343	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2344	while read line
2345	do
2346	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2347	then
2348	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2349	then
2350	local_depository_path=`echo $line \| cut -d" " -s -f2`
2351	fi
2352	fi
2353	done < tmp_mrun
2354
2355	if [[ "$local_depository_path" = "" ]]
2356	then
2357	if [[ "$global_depository_path" != "" ]]
2358	then
2359	local_depository_path=$global_depository_path
2360	else
2361	printf "\n\n +++ no depository path found in configuration file"
2362	printf "\n for local host \"$localhost\" "
2363	printf "\n please set \"\%depository_path\" in configuration file\n"
2364	locat=config_file; exit
2365	fi
2366	fi
2367	eval local_depository_path=$local_depository_path
2368	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2369	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2370
2371
2372	basename=`print $mainprog \| cut -f1 -d"."`
2373	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2374	if [[ ! -f $make_depository ]]
2375	then
2376	printf "\n"
2377	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2378	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2379	else
2380	cp $make_depository $TEMPDIR_COMPILE
2381	cd $TEMPDIR_COMPILE
2382	tar -xf $make_depository > /dev/null 2>&1
2383	cd - > /dev/null
2384	fi
2385
2386	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2387
2388	else
2389
2390	cp $executable ${TEMPDIR}/a.out
2391
2392	fi
2393
2394
2395	# WECHSEL IN TEMPORAEREN KATALOG
2396	cd $TEMPDIR
2397	printf "\n *** changed to temporary directory: $TEMPDIR"
2398
2399
2400	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2401	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2402	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2403	# ERMITTELN
2404	(( i = 0 ))
2405	while (( i < iout ))
2406	do
2407	(( i = i + 1 ))
2408	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2409	then
2410	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2411	else
2412	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2413	fi
2414	done
2415
2416
2417	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2418	if [[ $do_compile = true ]]
2419	then
2420
2421
2422	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2423	printf "\n\n\n *** compilation starts \n$striche\n"
2424	printf " *** compilation with make using following options:\n"
2425	printf " make depository: $make_depository"
2426	if [[ "$mopts" != "" ]]
2427	then
2428	printf " make options: $mopts\n"
2429	fi
2430	printf " compilername: $compiler_name\n"
2431	printf " compiler options: $fopts\n"
2432	printf " preprocessor-directives: $cpp_options \n"
2433	printf " linker-options: $lopts \n"
2434	printf " source code files: $source_list \n"
2435
2436	if [[ $localhost = nech ]]
2437	then
2438	ssh 136.172.44.192 -l $usern ". /SX/opt/etc/initsx.sh; cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2439	cp $TEMPDIR_COMPILE/a.out .
2440	[[ $? != 0 ]] && compile_error=true
2441	rm -rf $TEMPDIR_COMPILE
2442	elif [[ $localhost = ibmh ]]
2443	then
2444	printf " compiler is called via ssh on \"plogin1\" \n"
2445	ssh plogin1 -l $usern "export PATH=/sw/ibm/xlf/12.1.0.3/usr/bin:$PATH; cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2446	[[ ! -f a.out ]] && compile_error=true
2447	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2448	elif [[ $localhost = lcsgib ]]
2449	then
2450	printf " compiler is called via ssh on \"bicegate\" using module \"$mpilib\" \n"
2451	ssh 130.73.232.103 -l $usern ". /usr/share/modules/init/bash; module load ifort/11.0.069; module load $mpilib; cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2452	[[ ! -f a.out ]] && compile_error=true
2453	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2454	elif [[ $localhost = lcsgih ]]
2455	then
2456	printf " compiler is called via ssh on \"hicegate2\" using module \"$mpilib\" \n"
2457	ssh 130.75.4.103 -l $usern ". /usr/share/modules/init/bash; module load ifort/11.0.069; module load $mpilib; cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2458	[[ ! -f a.out ]] && compile_error=true
2459	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2460	else
2461	[[ $localhost = lctit ]] && export LM_LICENSE_FILE=27050@tggls
2462	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2463	fi
2464
2465	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2466	then
2467	printf "\n +++ error occured while compiling or linking"
2468	locat=compile
2469
2470	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
2471	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
2472	# then
2473	exit
2474	# else
2475	# locat=normal
2476	# fi
2477	else
2478	printf "$striche\n *** compilation finished \n"
2479	fi
2480	fi
2481
2482
2483	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2484	if [[ $local_compile = true ]]
2485	then
2486	cd $HOME
2487	rm -rf $TEMPDIR
2488	locat=local_compile; exit
2489	fi
2490
2491
2492	# BEREITSTELLEN DER INPUT-DATEIEN
2493	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2494	(( i = 0 ))
2495	while (( i < iin ))
2496	do
2497	(( i = i + 1 ))
2498	if (( i == 1 ))
2499	then
2500	printf "\n\n *** providing INPUT-files:\n$striche"
2501	fi
2502
2503
2504	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2505	if [[ "${transin[$i]}" = unavailable ]]
2506	then
2507	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2508	then
2509	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2510	printf "\n is not available!"
2511	else
2512	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2513	printf "\n is not available!"
2514	fi
2515	continue
2516	fi
2517
2518	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2519	files_for_pes=false; datentyp=file
2520	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2521	then
2522	files_for_pes=true; datentyp=directory
2523	actionin[$i]=""
2524	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2525	then
2526	actionin[$i]=""
2527	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2528	then
2529	files_for_pes=true; datentyp=directory
2530	actionin[$i]="ar"
2531	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2532	then
2533	actionin[$i]="ar"
2534	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2535	then
2536	files_for_pes=true; datentyp=directory
2537	actionin[$i]="fl"
2538	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2539	then
2540	actionin[$i]="fl"
2541	fi
2542
2543	if [[ $files_for_pes = true ]]
2544	then
2545	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
2546	else
2547	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
2548	fi
2549
2550	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
2551	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
2552	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
2553	# SERVER ZU HOLEN
2554	if [[ "${actionin[$i]}" = fl ]]
2555	then
2556	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
2557	if [[ $files_for_pes = false ]]
2558	then
2559	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
2560	then
2561	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
2562	got_tmp[$i]=true
2563	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2564	then
2565	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2566	printf "\n *** trying to use backup copy in \"$WORK\" "
2567	cp $WORK/${frelin[$i]} ${localin[$i]}
2568	else
2569	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2570	printf "\n or \"$tmp_data_catalog\" does not exist!"
2571	printf "\n *** trying to get copy from archive"
2572	actionin[$i]=ar
2573	fi
2574	else
2575	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
2576	then
2577	mkdir ${localin[$i]}
2578	cd $tmp_data_catalog/${frelin[$i]}
2579	for file in $(ls *)
2580	do
2581	ln $file $TEMPDIR/${localin[$i]}
2582	done
2583	cd $TEMPDIR
2584	got_tmp[$i]=true
2585	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2586	then
2587	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2588	printf "\n *** trying to use backup copy in \"$WORK\" "
2589	cp -r $WORK/${frelin[$i]} ${localin[$i]}
2590	else
2591	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2592	printf "\n or \"$tmp_data_catalog\" does not exist!"
2593	printf "\n *** trying to get copy from archive"
2594	actionin[$i]=ar
2595	fi
2596	fi
2597	fi
2598
2599
2600	# DATEI LIEGT AUF ARCHIV-SERVER
2601	if [[ "${actionin[$i]}" = ar ]]
2602	then
2603
2604	if [[ $files_for_pes = false ]]
2605	then
2606	printf "\n file will be restored from archive-system ($archive_system)!"
2607	else
2608	printf "\n directory will be restored from archive-system ($archive_system)!"
2609	fi
2610
2611	file_restored=false
2612
2613	if [[ $archive_system = asterix ]]
2614	then
2615	do_stagein=true
2616	(( stagein_anz = 0 ))
2617	while [[ $do_stagein = true ]]
2618	do
2619	if [[ $files_for_pes = false ]]
2620	then
2621	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
2622	else
2623	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
2624	fi
2625	cat STAGEIN_OUTPUT
2626	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
2627	then
2628	file_restored=true
2629	do_stagein=false
2630	else
2631	(( stagein_anz = stagein_anz + 1 ))
2632	if (( stagein_anz == 10 ))
2633	then
2634	printf "\n +++ stagein stoped after 10 tries"
2635	locat=stage
2636	exit
2637	fi
2638	printf "\n +++ restoring from archive failed, trying again:"
2639	sleep 900
2640	fi
2641	done
2642	elif [[ $archive_system = DMF ]]
2643	then
2644	if [[ $files_for_pes = false ]]
2645	then
2646	printf "\n +++ restoring of single files impossible with $archive_system !\n"
2647	locat=DMF
2648	exit
2649	else
2650	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
2651	cp -r $ARCHIVE/${frelin[$i]} $PWD
2652	file_restored=true
2653	fi
2654	elif [[ $archive_system = tivoli ]]
2655	then
2656	if [[ $files_for_pes = false ]]
2657	then
2658	if [[ $localhost = lcsgih ]]
2659	then
2660	ssh $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2661	else
2662	ssh $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2663	fi
2664	else
2665	(( inode = 0 ))
2666	while (( inode < nodes ))
2667	do
2668	if [[ $localhost = lcsgih ]]
2669	then
2670	ssh $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2671	else
2672	ssh $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2673	fi
2674	(( inode = inode + 1 ))
2675	done
2676	fi
2677	file_restored=true
2678	elif [[ $archive_system = ut ]]
2679	then
2680	if [[ $files_for_pes = false ]]
2681	then
2682	cp $UT/${frelin[$i]} .
2683	else
2684	(( inode = 0 ))
2685	while (( inode < nodes ))
2686	do
2687	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
2688	(( inode = inode + 1 ))
2689	done
2690	fi
2691	file_restored=true
2692	else
2693	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
2694	locat=rearchive
2695	exit
2696	fi
2697
2698	if [[ $file_restored = true ]]
2699	then
2700
2701	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
2702	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
2703	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
2704	if [[ $files_for_pes = false ]]
2705	then
2706	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
2707	else
2708	mkdir $tmp_data_catalog/${frelin[$i]}
2709	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
2710	fi
2711	got_tmp[$i]=true
2712
2713	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
2714	mv ${frelin[$i]} ${localin[$i]}
2715
2716	fi
2717	fi
2718
2719
2720	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
2721	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
2722	then
2723
2724	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
2725	then
2726
2727	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
2728	printf "\n file will be provided for $numprocs processors"
2729	mkdir ${localin[$i]}
2730	ival=$numprocs
2731	(( ii = 0 ))
2732	while (( ii <= ival-1 ))
2733	do
2734	if (( ii < 10 ))
2735	then
2736	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
2737	elif (( ii < 100 ))
2738	then
2739	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
2740	elif (( ii < 1000 ))
2741	then
2742	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
2743	else
2744	cp ${absnamein[$i]} ${localin[$i]}/_$ii
2745	fi
2746	(( ii = ii + 1 ))
2747	done
2748
2749	else
2750
2751	if [[ $files_for_pes = true ]]
2752	then
2753
2754	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
2755	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
2756	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
2757	# PER MOVE UMBENANNT WERDEN
2758	printf "\n providing $numprocs files for the respective processors"
2759	mkdir ${localin[$i]}
2760	if [[ $link_local_input = true ]]
2761	then
2762	printf " using ln -f\n"
2763	cd ${absnamein[$i]}
2764	for file in $(ls *)
2765	do
2766	ln -f $file ${localin[$i]}
2767	done
2768	cd $TEMPDIR
2769	fi
2770	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
2771	if [[ ! -f "${localin[$i]}/_0000" ]]
2772	then
2773	if [[ $link_local_input = true ]]
2774	then
2775	printf " ln failed for .../_0000, using cp...\n"
2776	fi
2777	cp -r ${absnamein[$i]}/* ${localin[$i]}
2778	fi
2779
2780	else
2781	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
2782	if [[ $link_local_input = true ]]
2783	then
2784	printf " using ln -f\n"
2785	ln -f ${absnamein[$i]} ${localin[$i]}
2786	fi
2787	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
2788	if [[ ! -f "${localin[$i]}" ]]
2789	then
2790	if [[ $link_local_input = true ]]
2791	then
2792	printf " ln failed, using cp...\n"
2793	fi
2794	cp ${absnamein[$i]} ${localin[$i]}
2795	fi
2796	fi
2797	fi
2798	fi
2799
2800	done
2801	if (( i != 0 ))
2802	then
2803	printf "\n$striche\n *** all INPUT-files provided \n"
2804	fi
2805
2806
2807	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
2808	(( i = 0 ))
2809	while (( i < iic ))
2810	do
2811	(( i = i + 1 ))
2812	if (( i == 1 ))
2813	then
2814	printf "\n\n *** execution of INPUT-commands:\n$striche"
2815	fi
2816	printf "\n >>> ${in_command[$i]}"
2817	eval ${in_command[$i]}
2818	if (( i == iic ))
2819	then
2820	printf "\n$striche\n"
2821	fi
2822	done
2823
2824
2825	# VERBLEIBENDE CPU-ZEIT BERECHNEN
2826	cpurest=${cpumax}.
2827
2828
2829	# START DVR STREAMING SERVER
2830	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
2831	then
2832	if [[ "$dvr_server" != "" ]]
2833	then
2834
2835	printf "\n\n *** preparing the dvr streaming server configuration file"
2836
2837	# Check, if a dvr server is already running
2838	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
2839	if [[ "$running_dvrserver_id" != "" ]]
2840	then
2841
2842	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
2843	printf "\n This server is used instead starting a new one!"
2844	printf "\n If required, script \"process_dvr_output\" has to be run manually."
2845
2846	else
2847
2848	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
2849	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
2850	then
2851	cp ${PALM_BIN}/.dvrserver.config .
2852
2853	# Entering the BASEDIR, UID and GID into this file
2854	user_id=`id -u`
2855	group_id=`id -g`
2856	# & is needed as seperator, because TEMPDIR contains /
2857	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
2858	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
2859	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
2860	mv .dvrserver.3 .dvrserver.config
2861	rm .dvrserver.1 .dvrserver.2
2862
2863	# Start dvr server in background, get his id and print on terminal
2864	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
2865	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
2866	printf "\n *** streaming server with id=$dvrserver_id is started in background"
2867	local_dvrserver_running=.TRUE.
2868	else
2869	printf "\n +++ missing file \".dvrserver.config\" in directory:"
2870	printf "\n \"$PALM_BIN\" "
2871	locat=dvr
2872	exit
2873	fi
2874
2875	fi
2876
2877	else
2878	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
2879	fi
2880	fi
2881
2882
2883	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
2884	# LESEN VON PALM)
2885	cat > ENVPAR << %%END%%
2886	&envpar run_identifier = '$fname', host = '$localhost',
2887	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2888	maximum_cpu_time_allowed = ${cpumax}.,
2889	revision = '$global_revision',
2890	local_dvrserver_running = $local_dvrserver_running /
2891
2892	%%END%%
2893
2894
2895	# PROGRAMMSTART
2896	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
2897	PATH=$PATH:$TEMPDIR
2898
2899	# MPI debug option (argument checking, slows down execution due to increased latency)
2900	if [[ "$mpi_debug" = true ]]
2901	then
2902	export MPI_CHECK_ARGS=1
2903	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
2904	fi
2905
2906	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
2907	then
2908	if [[ "$ENVIRONMENT" = BATCH ]]
2909	then
2910	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
2911	then
2912	printf "\n +++ debug is allowed in interactive mode only"
2913	locat=debug
2914	exit
2915	fi
2916	fi
2917	if [[ $localhost = decalpha ]]
2918	then
2919	dxladebug a.out
2920	elif [[ $localhost = ibmb \|\| $localhost = ibmh ]]
2921	then
2922
2923	# SETUP THE IBM MPI ENVIRONMENT
2924	export MP_SHARED_MEMORY=yes
2925	export AIXTHREADS_SCOPE=S
2926	export OMP_NUM_THREADS=$threads_per_task
2927	export AUTHSTATE=files
2928	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
2929
2930	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
2931	export MP_ADAPTER_USE=shared
2932	export MP_CPU_USE=multiple
2933	export MP_TIMEOUT=1200
2934
2935	unset MP_TASK_AFFINITY
2936
2937	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
2938	#(( ii = 1 ))
2939	#while (( ii <= $numprocs ))
2940	#do
2941	# echo $localhost_realname >> hostfile
2942	# (( ii = ii + 1 ))
2943	#done
2944	#export MP_HOSTFILE=hostfile
2945
2946	if [[ "$LOADLBATCH" = yes ]]
2947	then
2948	totalview poe a.out $ROPTS
2949	else
2950	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
2951	export TVDSVRLAUNCHCMD=ssh
2952	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
2953	fi
2954	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
2955	then
2956	# CURRENTLY NO DEBUGGER ON LCSGI
2957	if [[ $run_coupled_model = true ]]
2958	then
2959	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
2960	locat=debug
2961	exit
2962	else
2963	echo "no_coupling" > runfile_atmos
2964	fi
2965	(( ii = $numprocs / $threads_per_task ))
2966	export OMP_NUM_THREADS=$threads_per_task
2967	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
2968	if [[ $threads_per_task != 1 ]]
2969	then
2970	printf "\n threads per task: $threads_per_task"
2971	fi
2972	printf "\n\n"
2973	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
2974	then
2975	# export MPI_LAUNCH_TIMEOUT=360
2976	if [[ "$totalview" = true ]]
2977	then
2978	printf "\n running totalview debugger"
2979	mpiexec_mpt -tv -n $ii ./a.out $ROPTS < runfile_atmos
2980	else
2981	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
2982	fi
2983	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
2984	then
2985	# ulimit -s 300000 # A too large stack size causes problems
2986	# export MV2_NUM_PORTS=2
2987	# export MV2_CPU_MAPPING=0:1:2:3
2988	if [[ "$totalview" = true ]]
2989	then
2990	printf "\n running totalview debugger"
2991	mpiexec -tv ./a.out $ROPTS < runfile_atmos
2992	else
2993	mpiexec ./a.out $ROPTS < runfile_atmos
2994	fi
2995	fi
2996	else
2997	printf "\n +++ no debug available on \"$localhost\" "
2998	printf "\n or not implemented in mrun so far"
2999	locat=debug
3000	exit
3001	fi
3002	else
3003	if [[ -n $numprocs ]]
3004	then
3005	# RUNNING THE PROGRAM ON PARALLEL MACHINES
3006	if [[ $(echo $host \| cut -c1-3) = ibm ]]
3007	then
3008	# SETUP THE IBM MPI ENVIRONMENT
3009	if [[ $host != ibmh ]]
3010	then
3011	export MP_SHARED_MEMORY=yes
3012	export AIXTHREAD_SCOPE=S
3013	export OMP_NUM_THREADS=$threads_per_task
3014	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
3015	export AUTHSTATE=files
3016	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3017	# export MP_PRINTENV=yes
3018
3019	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3020	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3021	export MP_WAIT_MODE=poll
3022	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3023	fi
3024	if [[ "$LOADLBATCH" = yes ]]
3025	then
3026	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3027	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3028	then
3029	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3030	else
3031	if [[ $run_coupled_model = false ]]
3032	then
3033	if [[ "$ocean_file_appendix" = true ]]
3034	then
3035	echo "precursor_ocean" > runfile_atmos
3036	else
3037	echo "precursor_atmos" > runfile_atmos
3038	fi
3039	else
3040	(( iia = $numprocs_atmos / $threads_per_task ))
3041	(( iio = $numprocs_ocean / $threads_per_task ))
3042	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3043	printf "\n using $coupled_mode coupling"
3044	printf "\n\n"
3045	echo "coupled_run $iia $iio" > runfile_atmos
3046	fi
3047	poe ./a.out $ROPTS < runfile_atmos
3048	fi
3049	else
3050	if [[ $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms ]]
3051	then
3052	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3053	elif [[ $localhost = ibmy ]]
3054	then
3055	if [[ -f $hostfile ]]
3056	then
3057	cp $hostfile hostfile
3058	else
3059	(( ii = 1 ))
3060	while (( ii <= $numprocs ))
3061	do
3062	echo $localhost_realname >> hostfile
3063	(( ii = ii + 1 ))
3064	done
3065	fi
3066	export MP_HOSTFILE=hostfile
3067	if [[ $run_coupled_model = false ]]
3068	then
3069	if [[ "$ocean_file_appendix" = true ]]
3070	then
3071	echo "precursor_ocean" > runfile_atmos
3072	else
3073	echo "precursor_atmos" > runfile_atmos
3074	fi
3075	else
3076	(( iia = $numprocs_atmos / $threads_per_task ))
3077	(( iio = $numprocs_ocean / $threads_per_task ))
3078	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3079	printf "\n using $coupled_mode coupling"
3080	printf "\n\n"
3081	echo "coupled_run $iia $iio" > runfile_atmos
3082	fi
3083	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3084
3085	else
3086	if [[ "$host_file" = "" ]]
3087	then
3088	printf "\n +++ no hostfile given in configuration file"
3089	locat=config_file
3090	exit
3091	else
3092	eval host_file=$host_file
3093	fi
3094	export MP_HOSTFILE=$host_file
3095	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3096	fi
3097	fi
3098	elif [[ $host = nech \|\| $host = necriam ]]
3099	then
3100	(( ii = nodes ))
3101	if [[ $ii = 1 ]]
3102	then
3103	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3104	export MPIPROGINF=YES
3105	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3106	echo "*** execution on single node with mpirun"
3107	mpirun -np $numprocs ./a.out $ROPTS
3108	else
3109	(( i = 0 ))
3110	while (( i < ii ))
3111	do
3112	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3113	(( i = i + 1 ))
3114	done
3115
3116	echo "#!/bin/sh" > mpi_exec_shell
3117	echo " " >> mpi_exec_shell
3118	echo "set -u" >> mpi_exec_shell
3119	echo "F_ERRCNT=0" >> mpi_exec_shell
3120	echo "MPIPROGINV=YES" >> mpi_exec_shell
3121	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3122	echo "cpurest=$cpurest" >> mpi_exec_shell
3123	echo "fname=$fname" >> mpi_exec_shell
3124	echo "localhost=$localhost" >> mpi_exec_shell
3125	echo "return_addres=$return_addres" >> mpi_exec_shell
3126	echo "return_username=$return_username" >> mpi_exec_shell
3127	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3128	echo "write_binary=$write_binary" >> mpi_exec_shell
3129	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3130	echo " " >> mpi_exec_shell
3131	echo "export F_ERRCNT" >> mpi_exec_shell
3132	echo "export MPIPROGINV" >> mpi_exec_shell
3133	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3134	echo "export cpurest" >> mpi_exec_shell
3135	echo "export fname" >> mpi_exec_shell
3136	echo "export localhost" >> mpi_exec_shell
3137	echo "export return_addres" >> mpi_exec_shell
3138	echo "export return_username" >> mpi_exec_shell
3139	echo "export tasks_per_node" >> mpi_exec_shell
3140	echo "export write_binary" >> mpi_exec_shell
3141	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3142	echo " " >> mpi_exec_shell
3143	echo "exec ./a.out" >> mpi_exec_shell
3144
3145	chmod u+x mpi_exec_shell
3146	export MPIPROGINF=YES
3147	mpirun -f multinode_config &
3148	wait
3149
3150	fi
3151	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
3152	then
3153
3154	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3155	# DOES NOT EXIST
3156	if [[ $host != lcsgih && $host != lcsgib ]]
3157	then
3158	if [[ -f $hostfile ]]
3159	then
3160	cp $hostfile hostfile
3161	else
3162	(( ii = 1 ))
3163	while (( ii <= $numprocs / $threads_per_task ))
3164	do
3165	echo $localhost_realname >> hostfile
3166	(( ii = ii + 1 ))
3167	done
3168	fi
3169	eval zeile=\"`head -n $ii hostfile`\"
3170	printf "\n *** running on: $zeile"
3171	fi
3172
3173	(( ii = $numprocs / $threads_per_task ))
3174	export OMP_NUM_THREADS=$threads_per_task
3175	# echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3176	if [[ $threads_per_task != 1 ]]
3177	then
3178	# increase stack size to unlimited, because large runs
3179	# may abort otherwise
3180	ulimit -Ss unlimited
3181	printf "\n threads per task: $threads_per_task stacksize: unlimited"
3182	fi
3183	if [[ $run_coupled_model = false ]]
3184	then
3185	if [[ "$ocean_file_appendix" = true ]]
3186	then
3187	echo "precursor_ocean" > runfile_atmos
3188	else
3189	echo "precursor_atmos" > runfile_atmos
3190	fi
3191	printf "\n\n"
3192	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3193	then
3194	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3195	then
3196	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3197	# export MPI_DSM_DISTRIBUTE=1
3198	# MPI_DSM_CPULIST: pin MPI processes to cores
3199	if [[ $use_openmp = false ]]
3200	then
3201	if [[ "$sgi_feature" = ice2 ]]
3202	then
3203	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
3204	else
3205	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3206	fi
3207	fi
3208	# MPI_IB_RAILS: use both IB rails on ICE2
3209	export MPI_BUFS_PER_HOST=512
3210	export MPI_IB_RAILS=2
3211	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3212	export MPI_CONNECTIONS_THRESHOLD=8192
3213	echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
3214	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3215
3216	# next is test for openmp usage
3217	# mpiexec -n $ii -pernode ./a.out $ROPTS < runfile_atmos
3218	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3219	then
3220	export MV2_NUM_PORTS=2
3221	# The default setting of MV2_CPU_MAPPING gives best results
3222	# export MV2_ENABLE_AFFINITY=1
3223	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3224	# if [[ "$sgi_feature" = ice2 ]]
3225	# then
3226	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
3227	# else
3228	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3229	# fi
3230	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
3231	if [[ $threads_per_task != 1 ]]
3232	then
3233	mpiexec -npernode 1 ./a.out $ROPTS < runfile_atmos
3234	else
3235	mpiexec -np $ii ./a.out $ROPTS < runfile_atmos
3236	fi
3237	fi
3238	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3239	then
3240	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3241	else
3242	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3243	fi
3244	else
3245
3246	# currently there is no full MPI-2 support on ICE and XT4
3247	(( iia = $numprocs_atmos / $threads_per_task ))
3248	(( iio = $numprocs_ocean / $threads_per_task ))
3249	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3250	printf "\n using $coupled_mode coupling"
3251	printf "\n\n"
3252
3253	if [[ $coupled_mode = "mpi2" ]]
3254	then
3255	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3256	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3257	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3258	then
3259
3260	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3261	then
3262	# export MPI_LAUNCH_TIMEOUT=360
3263	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3264	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3265	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3266	then
3267	# ulimit -s 300000 # A too large stack size causes problems
3268	# export MV2_NUM_PORTS=2
3269	# export MV2_CPU_MAPPING=0:1:2:3
3270	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3271	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3272	fi
3273
3274	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3275	then
3276
3277	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3278	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3279
3280	else
3281	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3282	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3283	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3284	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3285	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3286	fi
3287	wait
3288
3289	else
3290
3291	echo "coupled_run $iia $iio" > runfile_atmos
3292	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3293	then
3294
3295	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3296	then
3297	# export MPI_LAUNCH_TIMEOUT=360
3298	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3299	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3300	then
3301	# ulimit -s 300000 # A too large stack size causes problems
3302	# export MV2_NUM_PORTS=2
3303	# export MV2_CPU_MAPPING=0:1:2:3
3304	mpiexec ./a.out $ROPTS < runfile_atmos
3305	fi
3306
3307	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3308	then
3309
3310	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3311
3312	elif [[ $host = lck ]]
3313	then
3314	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3315	fi
3316	wait
3317	fi
3318
3319	# if [[ $scirocco = true ]]
3320	# then
3321	# mpiexec -machinefile hostfile -n $ii a.out $ROPTS
3322	# else
3323	# mpirun -machinefile hostfile -np $ii a.out $ROPTS
3324	# fi
3325	fi
3326	elif [[ $host = decalpha ]]
3327	then
3328	dmpirun -np $numprocs a.out $ROPTS
3329	elif [[ $host = lckyoto ]]
3330	then
3331	set -xv
3332	export P4_RSHCOMMAND=plesh
3333	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
3334	if [[ "$ENVIRONMENT" = BATCH ]]
3335	then
3336	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
3337	# for pgi mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
3338	# for intel mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
3339	else
3340	mpirun -np $numprocs ./a.out $ROPTS
3341	# for intel mpiruni_rsh -np $numprocs ./a.out $ROPTS
3342	fi
3343	set +xv
3344	elif [[ $host = lctit ]]
3345	then
3346	export runfile=runfile.$kennung
3347
3348	echo "cd $PWD" > $runfile
3349	echo "export OMP_NUM_THREADS=$OMP_NUM_THREADS" >> $runfile
3350	echo "export cpurest=$cpurest" >> $runfile
3351	echo "export fname=$fname" >> $runfile
3352	echo "export localhost=$localhost" >> $runfile
3353	echo "export return_addres=$return_addres" >> $runfile
3354	echo "export return_username=$return_username" >> $runfile
3355	echo "export tasks_per_node=$tasks_per_node" >> $runfile
3356	echo "export write_binary=$write_binary" >> $runfile
3357	echo "export use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> $runfile
3358	echo "./a.out" >> $runfile
3359	chmod u+x $runfile
3360
3361	if [[ "$QUEUE" = interactive ]]
3362	then
3363	mpirun -np $numprocs a.out $ROPTS
3364	else
3365	(( mem_tsubame = $memory / 1024.0 ))
3366	echo "Memory for Tsubame for each process in GB:", $mem_tsubame
3367	# n1ge -fore -g 1S060156 -mpi $numprocs -mem 4 -N palm -q $queue a.out $ROPTS
3368	# /n1ge/TITECH_GRID/tools/bin/n1ge -fore -g $group_number -mpi ${numprocs}:$tasks_per_node -mem $mem_tsubame -N palm -rt $minuten -q $queue a.out $ROPTS
3369	n1ge -fore -g $group_number -mpi ${numprocs}:$tasks_per_node -mem $mem_tsubame -N palm -rt $minuten -q $queue a.out $ROPTS
3370	fi
3371
3372	rm $runfile
3373	else
3374	mpprun -n $numprocs a.out $ROPTS
3375	fi
3376	[[ $? != 0 ]] && execution_error=true
3377
3378
3379	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3380	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3381	then
3382	apprentice
3383	fi
3384	else
3385	a.out $ROPTS
3386	fi
3387	fi
3388	if [[ $? != 0 \|\| $execution_error = true ]]
3389	then
3390
3391	# ABBRUCH BEI LAUFZEITFEHLER
3392	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3393	printf "\n +++ runtime error occured"
3394	locat=execution
3395	exit
3396	else
3397	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3398	printf "\n$striche\n *** execution finished \n"
3399
3400	# Stop the dvr streaming server and process the dvr output in order
3401	# to create dvrs- and html-files containing all streams
3402	if [[ "$dvrserver_id" != "" ]]
3403	then
3404	kill $dvrserver_id
3405	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3406
3407	# If there is a directory, data have been output by the
3408	# streaming server. Otherwise, user has chosen dvrp_output=local
3409	if [[ -d DATA_DVR ]]
3410	then
3411
3412	# Add the current dvr configuration file to the dvr output
3413	# directory
3414	cp .dvrserver.config DATA_DVR
3415
3416	# Process the dvr output (option -s for also generating
3417	# sequence mode data)
3418	process_dvr_output -d DATA_DVR -f $fname -s
3419
3420	else
3421
3422	# Process the local output
3423	process_dvr_output -l -d DATA_DVR -f $fname
3424
3425	fi
3426
3427	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3428	then
3429
3430	# Process dvr output generated in local mode (dvrp_output=local)
3431	process_dvr_output -l -d DATA_DVR -f $fname
3432
3433	fi
3434	fi
3435
3436
3437
3438	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3439	(( i = 0 ))
3440	while (( i < ioc ))
3441	do
3442	(( i = i + 1 ))
3443	if (( i == 1 ))
3444	then
3445	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
3446	fi
3447	printf "\n >>> ${out_command[$i]}"
3448	eval ${out_command[$i]}
3449	if (( i == ioc ))
3450	then
3451	printf "\n$striche\n"
3452	fi
3453	done
3454
3455
3456	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
3457	if [[ $do_trace = true ]]
3458	then
3459	printf "\n\n"
3460	ls -al
3461	fi
3462
3463
3464
3465	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
3466	(( i = 0 ))
3467	while (( i < iout ))
3468	do
3469	(( i = i + 1 ))
3470	if (( i == 1 ))
3471	then
3472	printf "\n\n *** saving OUTPUT-files:\n$striche"
3473	fi
3474
3475	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3476	files_for_pes=false; filetyp=file
3477	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
3478	then
3479	files_for_pes=true; filetyp=directory
3480	actionout[$i]=""
3481	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
3482	then
3483	actionout[$i]=""
3484	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
3485	then
3486	files_for_pes=true; filetyp=directory
3487	actionout[$i]="ar"
3488	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
3489	then
3490	actionout[$i]="ar"
3491	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
3492	then
3493	files_for_pes=true; filetyp=directory
3494	actionout[$i]="fl"
3495	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
3496	then
3497	actionout[$i]="fl"
3498	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
3499	then
3500	files_for_pes=true; filetyp=directory
3501	actionout[$i]="tr"
3502	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
3503	then
3504	actionout[$i]="tr"
3505	fi
3506
3507	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
3508	then
3509	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
3510	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
3511	then
3512	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
3513	else
3514
3515
3516	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3517	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3518	# REMOTE-RECHNUNGEN
3519	if [[ "${actionout[$i]}" = tr ]]
3520	then
3521	if [[ $localhost != $fromhost ]]
3522	then
3523	if [[ $files_for_pes = false ]]
3524	then
3525	cps=""
3526	cst=""
3527	else
3528	cps=-c
3529	cst="/"
3530	fi
3531	if [[ $localhost = ibmb \|\| $localhost = nech ]]
3532	then
3533
3534	# TRANSFER IN EIGENSTAENDIGEM JOB
3535	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3536	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3537	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3538	if [[ $files_for_pes = false ]]
3539	then
3540	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3541	else
3542	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
3543	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
3544	fi
3545
3546	echo "set -x" > transfer_${localout[$i]}
3547	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3548
3549	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
3550	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
3551	printf "\n or higher cycle\n"
3552	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3553
3554	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3555
3556	if [[ $localhost = nech ]]
3557	then
3558	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3559	else
3560	if [[ "$LOGNAME" = b323013 ]]
3561	then
3562	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3563	else
3564	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3565	fi
3566	fi
3567
3568	else
3569
3570	# TRANSFER INNERHALB DIESES JOBS
3571	transfer_failed=false
3572	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
3573	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
3574	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3575	[[ $? != 0 ]] && transfer_failed=true
3576
3577	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3578	# LOKALER MASCHINE ANLEGEN
3579	if [[ $transfer_failed = true ]]
3580	then
3581	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3582	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3583
3584	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3585	# ANLEGEN.
3586	eval local_catalog=${pathout[$i]}
3587	if [[ ! -d $local_catalog ]]
3588	then
3589	printf " *** local directory does not exist. Trying to create:\n"
3590	printf " $local_catalog \n"
3591	mkdir -p $local_catalog
3592	fi
3593	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3594	transfer_problems=true
3595	fi
3596	fi
3597	else
3598
3599	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
3600	actionout[$i]=""
3601	fi
3602	fi
3603
3604
3605	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3606	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3607	# REMOTE-RECHNUNGEN
3608	if [[ "${actionout[$i]}" = tra ]]
3609	then
3610	if [[ $localhost != $fromhost ]]
3611	then
3612	if [[ $localhost = ibmh \|\| $localhost = ibmb \|\| $localhost = nech ]]
3613	then
3614
3615	# TRANSFER IN EIGENSTAENDIGEM JOB
3616	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3617	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3618	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3619	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3620
3621	echo "set -x" > transfer_${localout[$i]}
3622	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3623
3624	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
3625	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
3626	printf "\n or higher cycle\n"
3627	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3628
3629	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3630
3631	if [[ $localhost = nech ]]
3632	then
3633	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3634	else
3635	if [[ $LOGNAME = b323013 ]]
3636	then
3637	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3638	else
3639	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3640	fi
3641	fi
3642
3643	else
3644
3645	# TRANSFER INNERHALB DIESES JOBS
3646	transfer_failed=false
3647	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
3648	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
3649	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3650	[[ $? != 0 ]] && transfer_failed=true
3651
3652	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3653	# LOKALER MASCHINE ANLEGEN
3654	if [[ $transfer_failed = true ]]
3655	then
3656	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3657	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3658
3659	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3660	# ANLEGEN
3661	eval local_catalog=${pathout[$i]}
3662	if [[ ! -d $local_catalog ]]
3663	then
3664	printf " *** local directory does not exist. Trying to create:\n"
3665	printf " $local_catalog \n"
3666	mkdir -p $local_catalog
3667	fi
3668
3669	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3670	transfer_problems=true
3671	fi
3672	fi
3673	else
3674
3675	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
3676	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
3677	actionout[$i]=a
3678	fi
3679	fi
3680
3681
3682	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
3683	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
3684	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
3685	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
3686	if [[ "${actionout[$i]}" = fl ]]
3687	then
3688	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3689	chmod g+rx $tmp_data_catalog
3690	if [[ $files_for_pes = false ]]
3691	then
3692	printf "\n >>> OUTPUT: ${localout[$i]} to"
3693	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3694	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
3695	else
3696	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
3697	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3698	mkdir $tmp_data_catalog/${frelout[$i]}
3699	cd ${localout[$i]}
3700	for file in $(ls *)
3701	do
3702	ln -f $file $tmp_data_catalog/${frelout[$i]}
3703	done
3704	cd $TEMPDIR
3705	fi
3706
3707
3708	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
3709	if [[ $store_on_archive_system = true ]]
3710	then
3711
3712	if [[ $archive_system = asterix ]]
3713	then
3714	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3715	if [[ $files_for_pes = false ]]
3716	then
3717	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3718	else
3719	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3720	fi
3721	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3722	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
3723	echo "then" >> archive_${frelout[$i]}
3724	echo " do_stageout=false" >> archive_${frelout[$i]}
3725	echo "else" >> archive_${frelout[$i]}
3726	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
3727	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
3728	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
3729	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
3730	if [[ $files_for_pes = false ]]
3731	then
3732	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
3733	else
3734	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
3735	fi
3736	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
3737	echo "fi" >> archive_${frelout[$i]}
3738	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3739	elif [[ $archive_system = DMF ]]
3740	then
3741	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3742	if [[ $files_for_pes = false ]]
3743	then
3744	printf "\n +++ archiving of single files impossible with $archive_system !\n"
3745	locat=DMF
3746	exit
3747	else
3748	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
3749	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
3750	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
3751	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
3752	fi
3753	elif [[ $archive_system = tivoli ]]
3754	then
3755	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3756	if [[ $files_for_pes = false ]]
3757	then
3758	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3759	echo "set -x" >> archive_${frelout[$i]}
3760	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3761	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3762	else
3763
3764	echo "set -x" >> archive_${frelout[$i]}
3765	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
3766	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3767	cd $tmp_data_catalog
3768	all_files=`ls -1 ${frelout[$i]}/*`
3769	cd - > /dev/null
3770	(( inode = 0 ))
3771	(( tp1 = tasks_per_node + 1 ))
3772	while (( inode < nodes ))
3773	do
3774	# echo "*** all_files = \"$all_files\" "
3775	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3776	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3777	# echo "*** tasks_per_node = \"$tasks_per_node\" "
3778	# echo "*** files = \"$files\" "
3779	# echo "*** all_files = \"$all_files\" "
3780	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3781	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3782	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
3783	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3784	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3785	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3786	(( inode = inode + 1 ))
3787	done
3788	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3789	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3790	fi
3791	elif [[ $archive_system = ut ]]
3792	then
3793	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3794	if [[ $files_for_pes = false ]]
3795	then
3796	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3797	echo "set -x" >> archive_${frelout[$i]}
3798	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3799	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3800	else
3801
3802	echo "set -x" >> archive_${frelout[$i]}
3803	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
3804	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
3805	cd $tmp_data_catalog
3806	all_files=`ls -1 ${frelout[$i]}/*`
3807	cd - > /dev/null
3808	(( inode = 0 ))
3809	(( tp1 = tasks_per_node + 1 ))
3810	while (( inode < nodes ))
3811	do
3812	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3813	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3814	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3815	(( inode = inode + 1 ))
3816	done
3817	fi
3818	elif [[ $archive_system = none ]]
3819	then
3820	printf " +++ archiving on $localhost not available!\n"
3821	fi
3822
3823	if [[ $archive_system != none ]]
3824	then
3825	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
3826	then
3827	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
3828	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog archive_${frelout[$i]}
3829	elif [[ $localhost = nech ]]
3830	then
3831	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
3832	fi
3833	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3834	fi
3835	else
3836	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
3837	fi
3838
3839
3840	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
3841	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
3842	if [[ $files_for_pes = false ]]
3843	then
3844	cat /dev/null > ${pathout[$i]}
3845	else
3846	mkdir -p ${pathout[$i]}
3847	fi
3848
3849	fi
3850
3851
3852	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
3853	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
3854	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
3855	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
3856	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
3857	# GEMAESSEN ARCHIVIERUNGEN GESETZT
3858	if [[ "${actionout[$i]}" = ar ]]
3859	then
3860	if [[ $files_for_pes = false ]]
3861	then
3862	printf "\n >>> OUTPUT: ${localout[$i]} to"
3863	printf "\n ${pathout[$i]}"
3864	printf "\n File will be copied to archive-system ($archive_system) !\n"
3865	else
3866	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
3867	printf "\n ${pathout[$i]}"
3868	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
3869	fi
3870	mv ${localout[$i]} ${frelout[$i]}
3871
3872	file_saved=false
3873
3874	if [[ $archive_system = asterix ]]
3875	then
3876	do_stageout=true
3877	(( stageout_anz = 0 ))
3878	while [[ $do_stageout = true ]]
3879	do
3880	if [[ $files_for_pes = false ]]
3881	then
3882	stageout ${frelout[$i]} > STAGE_OUTPUT
3883	else
3884	stageout -t ${frelout[$i]} > STAGE_OUTPUT
3885	fi
3886	cat STAGE_OUTPUT
3887	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
3888	then
3889	file_saved=true
3890	do_stageout=false
3891	else
3892	if [[ $files_for_pes = false ]]
3893	then
3894	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
3895	else
3896	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
3897	fi
3898	(( stageout_anz = stageout_anz + 1 ))
3899	if (( stageout_anz == 10 ))
3900	then
3901	printf "\n +++ stoped after 10 unsuccessful tries!"
3902	archive_save=false
3903	do_stageout=false
3904	else
3905	printf "\n *** new try to store on archive after 15 min:"
3906	sleep 900
3907	fi
3908	fi
3909	done
3910	elif [[ $archive_system = DMF ]]
3911	then
3912	if [[ $files_for_pes = false ]]
3913	then
3914	printf "\n +++ archiving of single files impossible on $archive_system!\n"
3915	locat=DMF
3916	exit
3917	else
3918	rm -rf $ARCHIVE/${frelout[$i]}
3919	cp -r ${frelout[$i]} $ARCHIVE
3920	fi
3921	file_saved=true
3922	elif [[ $archive_system = tivoli ]]
3923	then
3924	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
3925	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
3926	# GELEGT WERDEN
3927	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3928	chmod g+rx $tmp_data_catalog
3929	if [[ $files_for_pes = false ]]
3930	then
3931	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
3932	else
3933	mkdir $tmp_data_catalog/${frelout[$i]}
3934	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
3935	fi
3936
3937	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
3938	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
3939	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
3940	if [[ $files_for_pes = false ]]
3941	then
3942	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3943	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3944	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3945	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3946	else
3947	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3948	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3949	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3950	fi
3951
3952	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
3953	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3954	file_saved=true
3955
3956	elif [[ $archive_system = ut ]]
3957	then
3958	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
3959	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
3960	# GELEGT WERDEN
3961	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3962	chmod g+rx $tmp_data_catalog
3963	if [[ $files_for_pes = false ]]
3964	then
3965	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
3966	else
3967	mkdir $tmp_data_catalog/${frelout[$i]}
3968	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
3969	fi
3970
3971	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
3972	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
3973	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
3974	if [[ $files_for_pes = false ]]
3975	then
3976	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3977	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3978	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3979	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3980	else
3981	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3982	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3983	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3984	fi
3985
3986	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
3987	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3988	file_saved=true
3989
3990	else
3991	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
3992	archive_save=false
3993	fi
3994	if [[ $file_saved = true ]]
3995	then
3996	if [[ $files_for_pes = false ]]
3997	then
3998	cat /dev/null > ${pathout[$i]}
3999	else
4000	mkdir -p ${pathout[$i]}
4001	fi
4002	fi
4003	fi
4004
4005	# APPEND AUF LOKALER MASCHINE
4006	if [[ "${actionout[$i]}" = "a" ]]
4007	then
4008	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
4009	cat ${localout[$i]} >> ${pathout[$i]}
4010	fi
4011
4012	# KOPIEREN AUF LOKALER MASCHINE
4013	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
4014	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
4015	then
4016
4017	# KOPIEREN AUF EINPROZESSORMASCHINE
4018	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4019	then
4020	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
4021	if [[ $link_local_output = true ]]
4022	then
4023	printf " using ln -f\n"
4024	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4025	fi
4026	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4027	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
4028	then
4029	if [[ $link_local_output = true ]]
4030	then
4031	printf " ln failed, using cp...\n"
4032	fi
4033	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4034	fi
4035	else
4036	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
4037	if [[ $link_local_output = true ]]
4038	then
4039	printf " using ln -f\n"
4040	ln -f ${localout[$i]} ${pathout[$i]}
4041	fi
4042	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4043	if [[ ! -f "${pathout[$i]}" ]]
4044	then
4045	if [[ $link_local_output = true ]]
4046	then
4047	printf " ln failed, using cp...\n"
4048	fi
4049	cp ${localout[$i]} ${pathout[$i]}
4050	fi
4051	fi
4052
4053	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
4054	then
4055
4056	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
4057	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
4058	# WIRD DANN KOPIERT
4059	# PER MOVE UMBENANNT WERDEN
4060	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4061	if [[ $link_local_output = true ]]
4062	then
4063	printf " using ln -f\n"
4064	mkdir ${pathout[$i]}
4065	cd ${localout[$i]}
4066	for file in $(ls *)
4067	do
4068	ln -f $file ${pathout[$i]}
4069	done
4070	cd $TEMPDIR
4071	fi
4072	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4073	if [[ ! -f "${pathout[$i]}/_0000" ]]
4074	then
4075	if [[ $link_local_output = true ]]
4076	then
4077	printf " ln failed for .../_0000, using cp...\n"
4078	fi
4079	cp -r ${localout[$i]} ${pathout[$i]}
4080	fi
4081
4082	fi
4083	fi
4084	done
4085	if (( i != 0 ))
4086	then
4087	if [[ $transfer_problems = true ]]
4088	then
4089	printf "\n$striche\n *** OUTPUT-files saved"
4090	printf "\n +++ WARNING: some data transfers failed! \n"
4091	else
4092	printf "\n$striche\n *** all OUTPUT-files saved \n"
4093	fi
4094	fi
4095
4096
4097	# EVENTUELL FOLGEJOB STARTEN
4098	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4099	if [[ -f CONTINUE_RUN ]]
4100	then
4101
4102	if [[ $archive_save = true ]]
4103	then
4104
4105	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4106	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4107	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4108	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4109	# HANDEN
4110	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4111	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4112	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4113	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4114	then
4115	mc=`echo $mc \| sed 's/#/f/g'`
4116	fi
4117
4118
4119	# JOB STARTEN
4120	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4121	echo " $mc"
4122	printf "\n$striche\n"
4123	if [[ $localhost != $fromhost ]]
4124	then
4125
4126	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms \|\| $localhost = lctit ]]
4127	then
4128	echo "*** ssh will be used to initiate restart-runs!"
4129	echo " return_addres=\"$return_addres\" "
4130	echo " return_username=\"$return_username\" "
4131	if [[ $return_addres = 172.20.25.41 ]]
4132	then
4133	# WORKAROUND AUF SCIROCCO AM TIT
4134	print "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc " \| ssh $return_addres -l $return_username
4135	elif [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4136	then
4137	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export LD_LIBRARY_PATH=\$LD_LIBRARY_PATH:/muksoft/packages/intel/Compiler/11.0/083/lib/intel64/;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4138	else
4139	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4140	fi
4141	else
4142	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4143	locat=restart; exit
4144	fi
4145
4146	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4147	# DER AKTUELLE JOB ENDET
4148	if [[ $queue = special1q ]]
4149	then
4150	sleep 120
4151	else
4152	sleep 30
4153	fi
4154
4155	else
4156
4157	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4158	# RUFEN WERDEN, AUSSER AUF lcfimm
4159	cd $LOCAL_PWD
4160	if [[ $localhost = lcfimm ]]
4161	then
4162	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4163	else
4164	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4165	fi
4166	cd - > /dev/null
4167	fi
4168	printf "\n$striche\n *** restart-run initiated \n"
4169
4170
4171	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4172	# GEHOLT WORDEN SIND, LOESCHEN
4173	(( i = 0 ))
4174	while (( i < iin ))
4175	do
4176	(( i = i + 1 ))
4177	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4178	then
4179	rm -r $tmp_data_catalog/${frelin[$i]}
4180	fi
4181	done
4182
4183	else
4184
4185	printf "\n +++ no restart-run possible, since errors occured"
4186	printf "\n during the archive process"
4187	fi
4188
4189	fi
4190
4191
4192
4193	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4194	if [[ "$email_notification" != "none" ]]
4195	then
4196
4197	if [[ $localhost != $fromhost ]]
4198	then
4199	if [[ -f CONTINUE_RUN ]]
4200	then
4201	echo "PALM restart run necessary" > email_text
4202	echo "description header of actual run:" >> email_text
4203	cat CONTINUE_RUN >> email_text
4204	echo "mrun-command to restart:" >> email_text
4205	echo "$mc" >> email_text
4206	else
4207	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4208	fi
4209	mail $email_notification < email_text
4210	printf "\n *** email notification sent to \"$email_notification\" "
4211	fi
4212	fi
4213
4214
4215
4216	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4217	cd $HOME
4218	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4219
4220	else
4221
4222
4223	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4224	# CHENDE AKTIONEN DURCHGEFUEHRT
4225
4226	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4227	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
4228	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4229	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4230	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4231	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4232	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4233	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4234	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4235	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4236	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4237	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4238	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4239	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4240	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4241	if [[ $use_openmp = true ]]
4242	then
4243	mrun_com=${mrun_com}" -O"
4244	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $threads_per_task"
4245	else
4246	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4247	fi
4248	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
4249	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4250	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4251	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4252	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4253	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4254	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4255	if [[ $do_remote = true ]]
4256	then
4257	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4258	fi
4259
4260
4261	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4262	jobfile=jobfile.$RANDOM
4263
4264
4265	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4266	echo "mkdir $TEMPDIR" >> $jobfile
4267	echo "cd $TEMPDIR" >> $jobfile
4268
4269
4270	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4271	if [[ $do_trace = true ]]
4272	then
4273	echo "set -x" >> $jobfile
4274	else
4275	echo "set +vx" >> $jobfile
4276	fi
4277
4278
4279	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4280	# DATEI FUER DEN JOB
4281	if [[ $( echo $host \| cut -c1-5 ) = lcsgi ]]
4282	then
4283
4284	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4285	# KOPIEREN
4286	if [[ $restart_run != true ]]
4287	then
4288	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4289	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4290	fi
4291
4292	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4293	echo "set -x" >> $jobfile
4294	echo "scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4295	echo "export SOURCES_COMPLETE=true" >> $jobfile
4296
4297	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4298	# ARBEITSVERZEICHNIS VERSCHIEBEN
4299	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4300	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4301	echo "execute_mrun=true" >> $jobfile
4302	echo " " >> $jobfile
4303
4304	else
4305
4306	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4307	# SOWIE GEGEBENENFALLS DES MAKEFILES
4308	if [[ $do_compile = true ]]
4309	then
4310
4311	source_catalog=SOURCES_FOR_RUN_$fname
4312
4313	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4314	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4315	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4316	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4317	echo "export SOURCES_COMPLETE=true" >> $jobfile
4318	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4319
4320	for filename in $source_list
4321	do
4322	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4323	echo "cat > $filename << \"%END%\"" >> $jobfile
4324	cat $source_catalog/$filename >> $jobfile
4325	echo " " >> $jobfile
4326	echo "%END%" >> $jobfile
4327	echo " " >> $jobfile
4328	done
4329
4330	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4331	echo "cat > Makefile << \"%END%\"" >> $jobfile
4332	cat $source_catalog/Makefile >> $jobfile
4333	echo " " >> $jobfile
4334	echo "%END%" >> $jobfile
4335	echo " " >> $jobfile
4336
4337	echo "cd - > /dev/null" >> $jobfile
4338
4339	fi
4340
4341
4342	# ABSPEICHERN DER KONFIGURATIONSDATEI
4343	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4344	echo "cat > $config_file << \"%END%\"" >> $jobfile
4345	cat $config_file >> $jobfile
4346	echo "%END%" >> $jobfile
4347	echo " " >> $jobfile
4348
4349
4350	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
4351	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4352	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
4353	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
4354	echo "%END%" >> $jobfile
4355	if [[ $host = lctit ]]
4356	then
4357	echo "sed 's/bin\/ksh/home2\/usr5\/mkanda\/pub\/ksh/' < $mrun_script_name > mrun_new" >> $jobfile
4358	echo "mv mrun_new $mrun_script_name" >> $jobfile
4359	fi
4360	echo "chmod u+x $mrun_script_name" >> $jobfile
4361	echo "execute_mrun=true" >> $jobfile
4362	echo " " >> $jobfile
4363
4364	fi
4365
4366
4367	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
4368	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
4369	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
4370	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
4371	if [[ $do_remote = true ]]
4372	then
4373	(( i = 0 ))
4374	while (( i < iin ))
4375	do
4376	(( i = i + 1 ))
4377	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
4378	if [[ "${transin[$i]}" = job ]]
4379	then
4380	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
4381	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
4382	echo " " >> $jobfile
4383	echo "%END%" >> $jobfile
4384	else
4385	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
4386	fi
4387
4388	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
4389	echo "if [[ \$? = 1 ]]" >> $jobfile
4390	echo "then" >> $jobfile
4391	echo " echo \" \" " >> $jobfile
4392	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
4393	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
4394	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
4395	echo " execute_mrun=false" >> $jobfile
4396	echo "fi" >> $jobfile
4397	done
4398	fi
4399
4400	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
4401	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
4402	echo "LOCAL_PWD=$working_directory" >> $jobfile
4403	echo "export LOCAL_PWD" >> $jobfile
4404
4405	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
4406	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
4407	echo "export LOCAL_MRUN_PATH" >> $jobfile
4408
4409	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
4410	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
4411	then
4412	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
4413	fi
4414
4415	# MRUN AUF ZIELRECHNER AUFRUFEN
4416	echo "set -x" >> $jobfile
4417	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
4418
4419	echo 'ls -al; echo `pwd`' >> $jobfile
4420	echo "cd \$HOME" >> $jobfile
4421	echo "rm -rf $TEMPDIR" >> $jobfile
4422
4423
4424
4425
4426	# JOB PER SUBJOB STARTEN
4427	if [[ $silent = false ]]
4428	then
4429	printf "\n "
4430	else
4431	printf "\n\n"
4432	fi
4433
4434	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $jobfile
4435	rm -rf $jobfile
4436
4437
4438	fi # ENDE REMOTE-TEIL
4439
4440
4441
4442	# ENDE DER PROZEDUR

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