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source: palm/trunk/SCRIPTS/mrun @ 342

Last change on this file since 342 was 331, checked in by raasch, 15 years ago
mrun adjustment for coupled runs on ibmy
Property svn:keywords set to `Id Rev`
File size: 163.3 KB

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1	#!/bin/ksh
2	# mrun - Plot-Shellskript
3	# $Id: mrun 331 2009-06-04 06:33:33Z heinze $
4
5	# Prozedur zum Starten von Modellaeufen
6
7	# letzte Aenderung:
8	# 03/03/94 - Siggi - Entwicklungsbeginn
9	# 21/03/94 - Siggi - Entwicklungsabschluss (Version 1.0)
10	# 09/12/94 - Siggi - allexport unterbunden; statt dessen werden jetzt ein-
11	# zelne Variable exportiert. Dies ist noetig, weil an-
12	# sonsten irgendein Speicher ueberlaeuft und von mrun
13	# aufgerufene Programme (z.B. stageout) mit Fehlern
14	# abbrechen (too many arguments)
15	# 20/06/95 - Siggi - noclobber muss explizit abgeschaltet, da jetzt
16	# defaultmaessig im RRZN-Profile eingeschaltet
17	# 10/06/97 - Siggi - Zusaetzliche Option -C bei cpp, damit // nicht
18	# wegfallen
19	# 25/04/00 - Siggi - Version 1.5
20	# remote_addres und remote_user in return_addres bzw.
21	# return_username umbenannt, return_username wird dem
22	# mrun-Aufruf im Job ueber Option -U mitgegeben.
23	# Neue Variable remote_username, die beim interaktiven
24	# mrun-Aufruf zwingend ueber die neue Option -u oder
25	# in der Konfigurationsdatei angegeben werden muss.
26	# 08/02/01 - Siggi - Alle mrun-Meldungen ins englische uebersetzt,
27	# Version 1.7
28	# 05/05/02 - Siggi - Uebersetzungen mittels make-Mechanismus moeglich
29	# 21/11/02 - Siggi - ENV-Variable XLFRTEOPTS wird vor Ausfuehrung auf
30	# IBM gesetzt, um Record-Laenge der NAMELIST-Dateien,
31	# zu bestimmen; Praeprozessoroptionen haben nun alle
32	# die Form -Dtext=text, weil auf IBM sonst text durch
33	# die leere Zeichenkette ersetzt wird
34	# 01/08/03 - Siggi - Test of implementing dvrp+1PE on ibm
35	# 07/01/04 - Siggi - additional preprocessor directive for ibm included
36	# (-D$OMP=OMP) in order to avoid problems with
37	# OMP_NUM_THREADS
38	# 04/01/05 - Siggi - archiving on hanni and berni is done in separate
39	# tar files, one for each node used
40	# 07/01/04 - Siggi - old code for t3e, vpp and hpcs eliminated
41	# 09/01/05 - Siggi - workaround for getting the IP address on gfdl3
42	# 17/01/05 - Siggi - job for data transfer to local machine now within
43	# job class c1 (HLRN)
44	# 27/01/05 - Siggi - IP address workaround for gfdl3 removed
45	# 28/01/05 - Siggi - tar-filenames on $PERM (HLRN) now include the
46	# base filename and cycle number
47	# 16/02/05 - Gerald - hababai validated
48	# 14/03/05 - Siggi - abort on NEC after first runtime error (F_ERRCNT)
49	# 29/03/05 - Marcus - berni*-en0 validated
50	# 21/04/05 - Siggi - transfer-job-protocol for avs-data is no more stored
51	# 24/04/05 - Siggi - netcdf support on lcmuk
52	# 25/04/05 - Siggi - netcdf support on gfld3 (decalpha)
53	# 11/05/05 - Siggi - files with non-numeric extensions (.xxx after cycle
54	# number) can now be used within interactive runs
55	# 12/05/05 - Siggi - netcdf support on ibm
56	# 13/05/05 - Siggi - error in tar-filenames on $PERM (HLRN) removed
57	# 18/05/05 - Siggi - netcdf support on nec
58	# 24/05/05 - Siggi - netcdf support on ibms
59	# 14/06/05 - Siggi - sleep interval after submit of restart job increased
60	# to 30 seconds
61	# 28/06/05 - Siggi - bora adjusted to new intel compiler (LD_LIBRARY_
62	# PATH is temporarily set)
63	# 07/09/05 - Siggi - setting of MP_EAGER_LIMIT switched off because it
64	# caused warnings in the job protocol
65	# 20/10/05 - Siggi - update of netcdf-version on decalpha (gfdl3)
66	# 25/10/05 - Siggi - error in listing files for getting the cycle number
67	# removed
68	# 26/10/05 - Siggi - new paths for dvrp-library, transfer of catalogs
69	# realized by file attribute trpe
70	# 28/10/05 - Siggi - if existing, the file extension is output in case
71	# of missing input file - no job abort in case of
72	# missing input files with file extensions
73	# (preliminary solution)
74	# 31/10/05 - Siggi - data transfer from nech now within seperate job
75	# 04/11/05 - Siggi - netcdf 3.6.0-p1 on ibmh/ibmb
76	# 07/12/05 - Siggi - gallego and elephanta admitted
77	# 30/12/05 - Siggi - gfdl5 (ibmy) admitted
78	# 10/01/06 - Siggi - cpp directive for NetCDF 64bit support
79	# 20/01/06 - Siggi - cpp directive for ibmy
80	# 09/02/06 - Siggi - ibmy admitted for batch mode
81	# 13/04/06 - Siggi - ostria admitted
82	# 18/04/06 - Siggi - usage of OpenMP implemented (additional option -O)
83	# 10/05/06 - Siggi - environment variable XLSMPOPTS set on IBM for
84	# optimization of OpenMP runs (option stacksize is
85	# necessary for large gridpoint numbers because
86	# otherwise a segmentation fault occurs)
87	# 23/05/05 - Siggi - lctit (SUN Fire X4600) admitted
88	# 21/08/06 - Siggi - standard mrun path on scirocco is as on bora
89	# 23/08/06 - Siggi - netcdf support for scirocco (notebook)
90	# 20/09/06 - Marcus - add DVRP library on nech
91	# 24/10/06 - Siggi - Environment variables for PALM steering are written
92	# on local NAMELIST file ENVPAR
93	# 24/11/06 - Siggi - levanto admitted, maestro switched to ifc 9.1
94	# 28/11/06 - Siggi - call to interpret_config.x_levanto because of SuSe 10
95	# 06/02/07 - Siggi - add DVRP library on lcmuk
96	# 07/02/07 - Siggi - revision of source code handling, source code is
97	# now expected in directory given by source_path and
98	# not in the current working directory, source code
99	# files provided in add_source_path are allways
100	# compiled, source code to be compiled is allways
101	# sampled in SOURCES_FOR_RUN_$fname which is a
102	# subdirectory of the current working directory,
103	# -s TEST changed to -s WRITE_PERMIT or -s WP,
104	# adapted for RIAM (neck)
105	# bugfix for cycle number of output file (extout)
106	# all hpmuk-related code removed
107	# 14/02/07 - Siggi - dvrp support for neck added
108	# 28/02/07 - Siggi - empty lines in configuration file are accepted
109	# mrun_path replaced by PALM_BIN,
110	# all machines are calling interpret_config.x
111	# 14/03/07 - Siggi - fimm admitted, revision number added to terminal
112	# output
113	# 16/03/07 - Siggi - adjustments for lctit
114	# 29/03/07 - Siggi - global revision transfered to batch job by new
115	# option -G
116	# 30/03/07 - Siggi - compilation "by hand" removed, cpp-directives/options
117	# + netcdf/dvrp-options are read from configuration
118	# file, host identifier (local_host) is read from
119	# config file, code related to ftp filetransfer
120	# removed (incl. option -f)
121	# 19/06/07 - Siggi - time limit for cdata jobs increased
122	# 25/07/07 - Siggi - two sets of executables can be started on lcmuk,
123	# if new option -Y (coupling) is given,
124	# output of executables to aout_output removed,
125	# messages are immediately written to stdout instead
126	# 03/08/07 - Marcus - add XOPT="-X $numprocs" for lcfimm
127	# 09/08/07 - Marcus - workaround on lcfimm to propagate environment
128	# variables out to the nodes in coupled mode -disabled-
129	# 13/08/07 - Marcus - start local restart jobs per ssh on lcfimm
130	# 28/08/07 - Marcus - completely remove workaround on lcfimm to propagate
131	# environment variables out to the nodes in coupled mode
132	# 15/10/07 - Siggi - Preliminary adjustments for lctit, based on Jin's
133	# suggestions
134	# 19/10/07 - Marcus - further adjustments for lctit: add new optional
135	# argument -g group_number, admit all sla* node_usage
136	# queues
137	# 30/10/07 - Marcus - further adjustments for queues on lctit
138	# 14/02/08 - Bjoern - link of restart files with long file name possible
139	# 28/02/08 - Marcus - If environment variable link_local_output is set to
140	# true, mrun tries "ln -f" on local output and resorts
141	# to "cp" or "cp -r" on error
142	# 15/04/08 - Siggi - argument -c introduced to most of the subjob calls,
143	# which allows the user to choose his own job catalog
144	# by setting job_catalog in the configuration file
145	# (default is ~/job_queue),
146	# workaround for mpiexec with -env option,
147	# adjustments for lcxt4 (Bergen Center for Computational
148	# Science)
149	# 22/05/08 - Marcus - If environment variable link_local_input is set to
150	# true, mrun tries "ln -f" on local input and resorts
151	# to "cp" or "cp -r" on error
152	# 27/05/08 - Siggi - PATH is set to PALM_BIN everywhere (missing so far)
153	# 14/07/08 - Siggi - adjustments for lcsgih
154	# 08/08/08 - Marcus - typo removed in lcxt4 branch
155	# 17/09/08 - Siggi - restart mechanism adjusted for lcsgi
156	# 02/10/08 - BjornM - argument "-Y" modified, adjustments for coupled runs
157	# 21/10/08 - Siggi - bugfix for the case that -K has more than one
158	# argument
159	# 08/11/08 - Siggi - bugfix for depository path settings in configuration
160	# file
161	# 11/11/08 - Siggi - rules for using user code files changed: user
162	# code splitted into one file per subroutine,
163	# user can provide his/her own makefile, only
164	# default source-code filenames are allowed
165	# 14/11/08 - Siggi - cond1 and cond2 are part of the depository name
166	# 08/01/09 - Siggi - mpi module on sgi machines to be used can be set
167	# with environment variable mpilib
168	# 13/01/09 - Siggi - totalview on hice/bice can be used in debug mode
169	# using environment variable totalview
170	# 25/02/09 - Siggi - cputime-option (-t) is allowed to be omitted for
171	# interactive runs
172	# 05/03/09 - Siggi - adjustments for new NEC-SX9 at RIAM (necriam)
173	# 16/03/09 - Siggi - dvrp_lib, dvrp_inc replaced by dvr_lib, dvr_inc,
174	# dvr streaming server is automatically started using
175	# new variable dvr_server and a configuration file
176	# .dvrserver.config,
177	# processing of dvr output files using new script
178	# process_dvr_output implemented, in order to make
179	# dvr application more user friendly
180	# 20/03/09 - Marcus - update of n1ge command for lctit
181	# 16/04/09 - Siggi - new option -y for precursor (uncoupled) ocean runs
182	# to be followed by a coupled atmosphere-ocean run
183	# 21/04/09 - Siggi - adjustments for new IBM at DKRZ, which is now ibmh
184
185
186	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
187
188	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
189	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
190	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
191
192	AddFilenames=""
193	additional_conditions=""
194	add_source_path=""
195	afname=""
196	archive_save=true
197	archive_system=none
198	compiler_name=""
199	cond1=""
200	cond2=""
201	config_file=.mrun.config
202	coupled_dist=""
203	coupled_mode="mpi1"
204	cpp_opts=""
205	cpp_options=""
206	cpumax=0
207	cpurest=0
208	delete_temporary_catalog=true
209	do_batch=false
210	do_compile=true
211	do_remote=false
212	do_stagein=true
213	do_stageout=true
214	do_trace=false
215	email_notification=""
216	exclude=""
217	executable=""
218	execution_error=false
219	fimm=false
220	fname=test
221	fromhost=""
222	global_revision=""
223	group_number=none
224	host=""
225	host_file=""
226	hp=""
227	ignore_archive_error=false
228	input_list=""
229	interpreted_config_file=""
230	job_catalog="~/job_queue"
231	job_on_file=""
232	keep_data_from_previous_run=false
233	link_local_input=false
234	link_local_output=false
235	localhost_realname=$(hostname)
236	local_compile=false
237	local_dvrserver_running=.FALSE.
238	locat=normal
239	mainprog=""
240	makefile=""
241	mc=$0
242	while [[ $(echo $mc \| grep -c "/") != 0 ]]
243	do
244	mc=`echo $mc \| cut -f2- -d"/"`
245	done
246	module_files=""
247	mrun_script_name=$mc
248	netcdf_inc=""
249	netcdf_lib=""
250	netcdf_support=false
251	node_usage=default
252	numprocs=""
253	numprocs_atmos=0
254	numprocs_ocean=0
255	OOPT=""
256	openmp=false
257	output_list=""
258	package_list=""
259	punkte="..........................................................."
260	queue=none
261	read_from_config=""
262	restart_run=false
263	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
264	if [[ $return_addres = 130.75.105.158 ]]
265	then
266	return_addres=172.20.25.41
267	echo "+++ WARNING: return_addres changed to $return_addres !!!!!"
268	fi
269	return_password=""
270	return_username=$LOGNAME
271	remotecall=false
272	remote_username=""
273	run_coupled_model=false
274	run_mode=""
275	scirocco=false
276	store_on_archive_system=true
277	striche=" ----------------------------------------------------------------------------"
278	silent=false
279	source_list=""
280	source_path=SOURCE
281	tasks_per_node=""
282	threads_per_task=1
283	tmpcreate=false
284	tmp_data_catalog=""
285	transfer_problems=false
286	usern=$LOGNAME
287	working_directory=`pwd`
288	TOPT=""
289	XOPT=""
290	zeit=$( date \| cut -c 12-19 )
291
292	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
293	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
294
295	typeset -R30 calltime
296	typeset -L20 spalte1
297	typeset -L40 spalte2
298	typeset -L60 spalte3
299	typeset -L35 string1=`date`
300	typeset -L12 string2=$usern
301	typeset -L12 string3=$localhost_realname
302	typeset -L12 string4
303	typeset -L12 string5
304	typeset -L30 version="MRUN 2.0 Rev$Rev: 331 $"
305
306
307
308	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
309	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
310
311	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
312	# EXPORTIERT WERDEN
313	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
314	export group_number input_list memory numprocs output_list queue run_mode
315
316
317
318	# FEHLERBEHANDLUNG
319	# BEI EXIT:
320	trap 'rm -rf $working_directory/tmp_mrun
321	if [[ $locat != localhost ]]
322	then
323	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
324	# then
325	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
326	#MRUN-calls on $localhost
327	#
328	#date and time user localhost remotehost termination mrun-command
329	#--------------------------------------------------------------------------------------------------------------------
330	#%STATEND%
331	# chmod 666 ${mrun_path}/statistik/mrun_statistik
332	# fi
333	#
334	# # EINTRAG IN DIE STATISTIK-DATEI
335	# string4=$host
336	# string5=$locat
337	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
338	# then
339	# if [[ $do_batch = true ]]
340	# then
341	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
342	# else
343	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
344	# fi
345	# fi
346	echo " " > /dev/null
347	fi
348
349	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
350	then
351
352	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
353	(( i = 0 ))
354	while (( i < iec ))
355	do
356	(( i = i + 1 ))
357	printf "\n *** Execution of ERROR-command:\n"
358	printf " >>> ${err_command[$i]}\n"
359	eval ${err_command[$i]}
360	done
361	if [[ -n $interpreted_config_file ]] then
362	rm -rf $interpreted_config_file
363	fi
364	if [[ -n .mrun_environment ]] then
365	rm -rf .mrun_environment
366	fi
367	if [[ $tmpcreate = true ]]
368	then
369	printf "\n *** Contents of \"$TEMPDIR\":\n"
370	ls -al; cd
371	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
372	fi
373	if [[ "$dvrserver_id" != "" ]]
374	then
375	echo "+++ killing dvrserver_id=$dvrserver_id"
376	kill $dvrserver_id
377	fi
378	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
379	then
380	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
381	fi
382	printf "\n\n+++ MRUN killed \n\n"
383	elif [[ $locat != control_c ]]
384	then
385	printf "\n\n --> all actions finished\n\n"
386	printf " Bye, bye $usern !!\n\n"
387	fi' exit
388
389
390	# BEI TERMINAL-BREAK:
391	trap 'rm -rf $working_directory/tmp_mrun
392	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
393	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
394	then
395	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
396	fi
397	if [[ "$dvrserver_id" != "" ]]
398	then
399	echo "+++ killing dvrserver_id=$dvrserver_id"
400	kill $dvrserver_id
401	fi
402	printf "\n+++ MRUN killed by \"^C\" \n\n"
403	locat=control_c
404	exit
405	' 2
406
407
408	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
409	# BEEN SET
410	if [[ "$PALM_BIN" = "" ]]
411	then
412	printf "\n +++ environment variable PALM_BIN has not been set"
413	printf "\n please set it to the directory where the PALM scripts are located"
414	locat=palm_bin; exit
415	fi
416	export PATH=$PALM_BIN:$PATH
417
418
419
420	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
421	# FUER FOLGEJOBS BENOETIGT WIRD
422	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:Op:P:q:r:R:s:St:T:u:U:vxX:yY: option
423	do
424	case $option in
425	(a) afname=$OPTARG;;
426	(A) store_on_archive_system=false; mc="$mc -A";;
427	(b) do_batch=true; mc="$mc -b";;
428	(B) delete_temporary_catalog=false; mc="$mc -B";;
429	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
430	(C) restart_run=true; mc="$mc -C";;
431	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
432	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
433	(F) job_on_file="-D"; mc="$mc -F";;
434	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
435	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
436	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
437	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
438	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
439	(I) ignore_archive_error=true; mc="$mc -I";;
440	(k) keep_data_from_previous_run=true; mc="$mc -k";;
441	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
442	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
443	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
444	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
445	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
446	(O) use_openmp=true; mc="$mc -O";;
447	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
448	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
449	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
450	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
451	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
452	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
453	(S) read_from_config=false; mc="$mc -S";;
454	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
455	(T) tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
456	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
457	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
458	(v) silent=true; mc="$mc -v";;
459	(x) do_trace=true;set -x; mc="$mc -x";;
460	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
461	(y) ocean_file_appendix=true; mc="$mc -y";;
462	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
463	(\?) printf "\n +++ unknown option $OPTARG \n"
464	printf "\n --> type \"$0 ?\" for available options \n"
465	locat=parameter;exit;;
466	esac
467	done
468
469
470	# EVTL. POSITIONSPARAMETER EINLESEN
471	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
472	shift OPTIND-1
473
474
475	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
476	if [[ "$1" = "?" ]]
477	then
478	(printf "\n *** mrun can be called as follows:\n"
479	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. <modus>\n"
480	printf "\n Description of available options:\n"
481	printf "\n Option Description Default-Value"
482	printf "\n -a base name of input files equiv. -d"
483	printf "\n -A no archiving when using file-attribute fl"
484	printf "\n -b batch-job on local machine ---"
485	printf "\n -B do not delete temporary directory at end ---"
486	printf "\n -c configuration file .mrun.config"
487	printf "\n -d base name of files attached to program test"
488	printf "\n -D preprocessor(cpp)-directives \"\" "
489	printf "\n -F create remote job file only ---"
490	printf "\n -h execution host $localhost_realname"
491	printf "\n -i INPUT control list \"\" "
492	printf "\n -I archiving errors of previous batch-jobs"
493	printf "\n will be ignored"
494	printf "\n -k keep data from previous run"
495	printf "\n -K additional conditions for controling"
496	printf "\n usage of conditional code and"
497	printf "\n env-variables in configuration file \"\" "
498	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
499	printf "\n -M Makefile name Makefile"
500	printf "\n -n node usage (shared/not_shared) depending on -h"
501	printf "\n -o OUTPUT control list \"\" "
502	printf "\n -O use OpenMP ---"
503	printf "\n -p software package list \"\" "
504	printf "\n -q queue \"$queue\" "
505	printf "\n -r run control list (combines -i -o) \"\" "
506	printf "\n -s filenames of routines to be compiled \"\" "
507	printf "\n must end with .f, .f90, .F, or .c !"
508	printf "\n use \"..\" for more than one file and wildcards"
509	printf "\n -s TEST compiles all files with w-permit"
510	printf "\n -S config file interpreted by shellscript ---"
511	printf "\n -t allowed cpu-time in seconds (batch) 0"
512	printf "\n -T tasks per node depending on -h"
513	printf "\n -u username on remote machine \"\" "
514	printf "\n -v no prompt for confirmation ---"
515	printf "\n -x tracing of mrun for debug purposes ---"
516	printf "\n -X # of processors (on parallel machines) 1"
517	printf "\n -y add appendix \"_O\" to all local output"
518	printf "\n files (ocean precursor runs followed by"
519	printf "\n coupled atmosphere-ocean runs) ---"
520	printf "\n -Y run coupled model, \"#1 #2\" with"
521	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
522	printf "\n "
523	printf "\n Possible values of positional parameter <modus>:"
524	printf "\n \"?\" - this outline \n\n") \| more
525	exit
526	elif [[ "$1" != "" ]]
527	then
528	printf "\n +++ positional parameter $1 unknown \n"
529	locat=parameter; exit
530	fi
531
532
533
534	# KURZE STARTMELDUNG
535	printf "\n*** $version "
536	printf "\n will be executed. Please wait ..."
537
538
539
540	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
541	if [[ ! -f $config_file ]]
542	then
543	printf "\n\n +++ configuration file: "
544	printf "\n $config_file"
545	printf "\n does not exist"
546	locat=connect; exit
547	fi
548
549
550	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
551	line=""
552	grep "%host_identifier" $config_file > tmp_mrun
553	while read line
554	do
555	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
556	then
557	HOSTNAME=`echo $line \| cut -d" " -s -f2`
558	host_identifier=`echo $line \| cut -d" " -s -f3`
559	if [[ $localhost_realname = $HOSTNAME ]]
560	then
561	localhost=$host_identifier
562	break
563	fi
564	fi
565	done < tmp_mrun
566
567	if [[ "$localhost" = "" ]]
568	then
569	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
570	printf "\n for local host \"$localhost_realname\"."
571	printf "\n Please add line"
572	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
573	printf "\n to the configuration file."
574	locat=localhost; exit
575	fi
576
577
578	# HOSTSPEZIFISCHE VARIABLEN SETZEN
579	case $localhost_realname in
580	(breg-en0\|berni-en0) archive_system=tivoli;;
581	(cs*) archive_system=ut;;
582	(fimm.bccs.uib.no) fimm=true;;
583	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
584	(hreg-en0\|hanni-en0) archive_system=tivoli;;
585	(scirocco) scirocco=true;;
586	esac
587
588
589
590	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
591	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
592	[[ "$afname" = "" ]] && afname=$fname
593
594
595	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
596	if [[ "$run_mode" != "" ]]
597	then
598	input_list="$input_list $run_mode"
599	output_list="$output_list $run_mode"
600	fi
601
602
603	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
604	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
605	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
606	# STARTET)
607	if [[ "$fromhost" = "" ]]
608	then
609	fromhost=$localhost
610	fi
611
612
613	# PRUEFEN, OB MRUN NUR TESTWEISE AUF DER LOKALEN MASCHINE KOMPILIEREN SOLL
614	if [[ "$source_list" = LOCAL_COMPILE_TEST ]]
615	then
616	source_list=TEST
617	local_compile=true
618	host=$localhost
619	fi
620
621
622	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
623	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
624	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
625	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
626	if [[ -n $host && "$host" != $localhost ]]
627	then
628	do_batch=true
629	do_remote=true
630	case $host in
631	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|nech\|necriam\|lcsgib\|lcsgih\|lctit\|unics\|lcxt4) true;;
632	(*) printf "\n"
633	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
634	printf "\n is not available"
635	locat=nqs; (( iec = 0 )); exit;;
636	esac
637	else
638	host=$localhost
639	fi
640
641
642	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
643	if [[ -n $additional_conditions ]]
644	then
645	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
646	cond1=`echo $additional_conditions \| cut -d" " -f1`
647	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
648	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
649	if [[ -n $dummy ]]
650	then
651	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
652	locat=options; exit
653	fi
654	fi
655
656
657	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
658	if [[ $run_coupled_model = true ]]
659	then
660
661	if [[ -n $coupled_dist ]]
662	then
663
664	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
665	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
666
667	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
668	then
669
670	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
671	printf "\n PEs (total) : $numprocs"
672	printf "\n PEs (atmosphere): $numprocs_atmos"
673	printf "\n PEs (ocean) : $numprocs_ocean"
674	locat=coupling; exit
675
676	# REARRANGING BECAUSE CURRENTLY ONLY 1:1 TOPOLOGIES ARE SUPPORTED
677	# THIS SHOULD BE REMOVED IN FUTURE
678	elif (( $numprocs_ocean != $numprocs_atmos ))
679	then
680
681	printf "\n +++ currently only 1:1 topologies are supported"
682	printf "\n PEs (total) : $numprocs"
683	printf "\n PEs (atmosphere): $numprocs_atmos"
684	printf "\n PEs (ocean) : $numprocs_ocean"
685	(( numprocs_atmos = $numprocs / 2 ))
686	(( numprocs_ocean = $numprocs / 2 ))
687	printf "\n +++ rearranged topology to $numprocs_atmos:$numprocs_ocean"
688
689	fi
690
691	else
692
693	(( numprocs_ocean = $numprocs / 2 ))
694	(( numprocs_atmos = $numprocs / 2 ))
695
696	fi
697	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
698
699	# GET coupled_mode FROM THE CONFIG FILE
700	line=""
701	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
702	while read line
703	do
704	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && ( $(echo $line \| cut -d" " -s -f4) = $cond1 \|\| $(echo $line \| cut -d" " -s -f4) = $cond2 ) ]]
705	then
706	coupled_mode="mpi2"
707	fi
708	done < tmp_mrun
709
710	fi
711
712
713	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
714	# ARCHIVIERUNG FEHLGESCHLAGEN IST
715	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
716	then
717	if [[ $ignore_archive_error = false ]]
718	then
719	printf "\n +++ data archiving of previous run failed"
720	printf "\n see directory \~/job_queue on remote machine"
721	locat=archive; exit
722	else
723	printf "\n +++ warning: data archiving in a previous run failed"
724	printf "\n MRUN continues, trying to get backup copy"
725	fi
726	fi
727
728
729
730	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
731	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
732	if [[ "$read_from_config" = false ]]
733	then
734
735	[[ $silent = false ]] && printf "\n Reading the configuration file... "
736	while read zeile
737	do
738	[[ $silent = false ]] && printf "."
739
740
741	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
742	# ERSETZEN
743	eval zeile=\"$zeile\"
744
745
746	# INTERPRETATION DER ZEILE
747	if [[ "$(echo $zeile)" = "" ]]
748	then
749	# LEERZEILE, KEINE AKTION
750	continue
751
752	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
753	then
754
755	# ZEILE IST KOMMENTARZEILE
756	true
757
758	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
759	then
760
761	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
762	zeile=$(echo $zeile \| cut -c2-)
763	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
764	var=`echo $zeile \| cut -d" " -f1`
765	value=`echo $zeile \| cut -d" " -s -f2`
766	for_host=`echo $zeile \| cut -d" " -s -f3`
767	for_cond1=`echo $zeile \| cut -d" " -s -f4`
768	for_cond2=`echo $zeile \| cut -d" " -s -f5`
769
770	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
771	then
772
773	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
774	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
775	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
776
777
778	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
779	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
780	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
781	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
782	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
783	# KONFIGURATIONSDATEI
784	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
785	then
786	eval $var=\$value
787
788	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
789	if [[ $do_trace = true ]]
790	then
791	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
792	fi
793	fi
794
795	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
796	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
797	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
798	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
799	if [[ $var = host ]]
800	then
801	if [[ -n $host && "$host" != $localhost ]]
802	then
803	do_batch=true
804	do_remote=true
805	case $host in
806	(ibm\|ibms\|ibmy\|lcsgib\|lcsgih\|lctit\|nech\|necriam\|unics\|lcxt4) true;;
807	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
808	printf "\n is not available"
809	locat=nqs; exit;;
810	esac
811	else
812	host=$localhost
813	fi
814	fi
815
816	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
817	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
818	# DEN PROGRAMMEN BENOETIGT WERDEN
819	export $var
820	fi
821
822
823
824
825	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
826	then
827
828	# ZEILE DEFINIERT ERROR-KOMMANDO
829	(( iec = iec + 1 ))
830	zeile=$(echo $zeile \| cut -c4-)
831	err_command[$iec]="$zeile"
832
833	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
834	then
835
836	# ZEILE DEFINIERT INPUT-KOMMANDO
837	(( iic = iic + 1 ))
838	zeile=$(echo $zeile \| cut -c4-)
839	in_command[$iic]="$zeile"
840
841	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
842	then
843
844	# ZEILE DEFINIERT OUTPUT-KOMMANDO
845	(( ioc = ioc + 1 ))
846	zeile=$(echo $zeile \| cut -c4-)
847	out_command[$ioc]="$zeile"
848
849	else
850
851	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
852	# s2a: in/out - Feld
853	# s2b: loc - Feld (optional)
854	# s2c: tr/ar - Feld (optional)
855	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
856	s1=`echo $zeile \| cut -d" " -f1`
857	s2=`echo $zeile \| cut -d" " -s -f2`
858	s2a=$(echo $s2 \| cut -d":" -f1)
859	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
860	then
861	s2b=""
862	s2c=""
863	else
864	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
865	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
866	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
867	fi
868	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
869	s3=`echo $zeile \| cut -d" " -f3`
870	s4=`echo $zeile \| cut -d" " -s -f4`
871	s5=`echo $zeile \| cut -d" " -s -f5`
872	s6=`echo $zeile \| cut -d" " -s -f6`
873
874
875	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
876	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
877	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
878	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
879	# HANDEN SEIN MUSS (D.H. s2b = loc)
880	IFSALT="$IFS"; IFS="$IFS:"
881	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
882	then
883	found=false
884	for actual in $input_list
885	do
886	for formal in $s3
887	do
888	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
889	done
890	done
891	if [[ $found = true ]]
892	then
893	(( iin = iin + 1 ))
894	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
895	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
896	extin[$iin]=$s6
897	fi
898	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
899	then
900	found=false
901	for actual in $output_list
902	do
903	for formal in $s3
904	do
905	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
906	done
907	done
908	if [[ $found = true ]]
909	then
910	(( iout = iout + 1 ))
911	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
912	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
913	fi
914	elif [[ "$s2a" != in && "$s2a" != out ]]
915	then
916	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
917	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
918	locat=connect; exit
919	fi
920	IFS="$IFSALT"
921	fi
922	done < $config_file
923
924	else
925
926
927	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
928	[[ $silent = false ]] && printf "..."
929	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
930	export interpreted_config_file=.icf.$RANDOM
931
932
933
934	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
935	# VERFUEGUNG STELLEN
936	cat > .mrun_environment << %%END%%
937	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
938	config_file = '$config_file', do_remote = '$do_remote',
939	do_trace = '$do_trace', host = '$host',
940	input_list = '$input_list', icf = '$interpreted_config_file',
941	localhost = '$localhost', output_list = '$output_list' /
942
943	%%END%%
944
945	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
946	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
947	mrun_memory=$memory
948	mrun_group_number=$group_number
949	mrun_cpumax=$cpumax
950	mrun_numprocs=$numprocs
951
952	if [[ $localhost_realname = "sx-fep" ]]
953	then
954	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
955	else
956	interpret_config.x
957	fi
958	rm .mrun_environment
959
960
961	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
962	chmod u+x $interpreted_config_file
963	export PATH=$PATH:.
964	. $interpreted_config_file
965	rm $interpreted_config_file
966
967
968	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
969	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
970	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
971	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
972	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
973
974	fi
975
976
977	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
978	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
979	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
980	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
981	if [[ "$SOURCES_COMPLETE" = "" ]]
982	then
983
984	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
985	# VEREINBART WURDE
986	source_path=""
987	line=""
988	grep "%source_path" $config_file > tmp_mrun
989	while read line
990	do
991	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
992	then
993	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
994	then
995	global_source_path=`echo $line \| cut -d" " -f2`
996	fi
997	fi
998	done < tmp_mrun
999
1000	line=""
1001	found=false
1002	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
1003	while read line
1004	do
1005	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1006	then
1007	if [[ $found = true ]]
1008	then
1009	printf "\n\n +++ more than one source path found in configuration file"
1010	printf "\n for local host \"$localhost\" "
1011	locat=source_path; exit
1012	fi
1013	source_path=`echo $line \| cut -d" " -f2`
1014	found=true
1015	fi
1016	done < tmp_mrun
1017	rm tmp_mrun
1018
1019	if [[ "$source_path" = "" ]]
1020	then
1021	if [[ "$global_source_path" != "" ]]
1022	then
1023	source_path=$global_source_path
1024	else
1025	printf "\n\n +++ no source path found in configuration file"
1026	printf "\n for local host \"$localhost\" "
1027	locat=source_path; exit
1028	fi
1029	fi
1030	eval source_path=$source_path
1031
1032	if [[ ! -d $source_path ]]
1033	then
1034	printf "\n\n +++ source path \"$source_path\" on local host"
1035	printf "\n \"$localhost\" does not exist"
1036	locat=source_path; exit
1037	fi
1038
1039	fi
1040
1041
1042	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
1043	# DURCH OPTION -G MITGETEILT)
1044	if [[ "$global_revision" = "" ]]
1045	then
1046	global_revision=`svnversion $source_path 2>/dev/null`
1047	global_revision="Rev: $global_revision"
1048	fi
1049
1050
1051	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
1052	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
1053	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
1054	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
1055	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
1056	if [[ -n $host && "$host" != $localhost ]]
1057	then
1058	do_batch=true
1059	do_remote=true
1060	case $host in
1061	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|lcsgib\|lcsgih\|lctit\|nech\|necriam\|unics\|lcxt4) true;;
1062	(*) printf "\n"
1063	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
1064	printf "\n is not available"
1065	locat=nqs; (( iec = 0 )); exit;;
1066	esac
1067	else
1068	host=$localhost
1069	fi
1070
1071
1072	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
1073	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1074	then
1075
1076	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
1077	if [[ ! -n $numprocs ]]
1078	then
1079	printf "\n"
1080	printf "\n +++ option \"-K parallel\" requires additional specification"
1081	printf "\n of the number of processors to be used by"
1082	printf "\n mrun-option \"-X\" or by environment-variable"
1083	printf "\n \"numprocs\" in the configuration file"
1084	locat=numprocs; (( iec = 0 )); exit
1085	fi
1086
1087	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
1088	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
1089	# GESAMTPROZESSORANZAHL IST
1090	if [[ $host = nech \|\| $host = necriam \|\| $host = ibmh \|\| $host = ibmb \|\| $host = ibms ]]
1091	then
1092	[[ "$tasks_per_node" = "" ]] && tasks_per_node=6
1093	(( ival = $tasks_per_node ))
1094	(( pes = numprocs ))
1095	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1096	# then
1097	# (( pes = pes - 1 ))
1098	# fi
1099	(( ii = pes / ival ))
1100	if (( pes - ii * ival > 0 ))
1101	then
1102	printf "\n"
1103	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1104	printf "\n divisor of the total number of processors (option \"-X\")"
1105	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1106	locat=tasks_per_node; (( iec = 0 )); exit
1107	fi
1108	fi
1109
1110	# IBMY HAT NUR EINEN KNOTEN
1111	if [[ $host = ibmy ]]
1112	then
1113	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1114	then
1115	printf "\n"
1116	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1117	printf "\n total number of processors (option \"-X\")"
1118	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1119	locat=tasks_per_node; (( iec = 0 )); exit
1120	fi
1121	fi
1122
1123	# FALLS OPENMP PARALLELISIERUNG VERWENDET WERDEN SOLL, ANZAHL VON THREADS
1124	# SETZEN UND ZAHL DER TASKS PRO KNOTEN AUF 1 SETZEN
1125	if [[ $use_openmp = true ]]
1126	then
1127	threads_per_task=$tasks_per_node
1128	tasks_per_node=1
1129	fi
1130	OOPT="-O $threads_per_task"
1131	TOPT="-T $tasks_per_node"
1132
1133	# GESAMTZAHL DER KNOTEN BESTIMMEN
1134	if [[ "$tasks_per_node" != "" ]]
1135	then
1136	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1137	fi
1138
1139	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1140	# SETZEN
1141	if [[ $node_usage = default ]]
1142	then
1143	if [[ $host = ibms ]]
1144	then
1145	node_usage=shared
1146	elif [[ $host = lctit ]]
1147	then
1148	node_usage=RAM64GB
1149	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1150	then
1151	node_usage=singlejob
1152	else
1153	node_usage=not_shared
1154	fi
1155	fi
1156
1157	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != RAM64GB ]]
1158	then
1159	printf "\n"
1160	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1161	printf "\n \"shared\" or \"not_shared\""
1162	locat=tasks_per_node; (( iec = 0 )); exit
1163	fi
1164
1165	fi
1166
1167	# PRUEFEN, OB HOSTFILE EXISTIERT
1168	if [[ -n $hostfile ]]
1169	then
1170	if [[ ! -f $hostfile ]]
1171	then
1172	printf "\n"
1173	printf "\n +++ hostfile \"$hostfile\" does not exist"
1174	locat=hostfile; exit
1175	fi
1176	fi
1177
1178	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1179	if [[ $host = ibmy && $do_remote = false ]]
1180	then
1181	if [[ ! -f $HOME/.rhosts ]]
1182	then
1183	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1184	printf "\n\n *** file:"
1185	printf "\n $HOME/.rhosts"
1186	printf "\n was created\n"
1187	fi
1188	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1189	then
1190	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1191	printf "\n\n *** file:"
1192	printf "\n $HOME/.rhosts"
1193	printf "\n was extended by the name of the current host\n"
1194	fi
1195	fi
1196
1197
1198
1199	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1200	if [[ $queue = none ]]
1201	then
1202	case $host in
1203	(ibmb) if [[ $node_usage = shared ]]
1204	then
1205	queue=cshare
1206	else
1207	queue=csolo
1208	fi;;
1209	(ibmh) queue=no_class;;
1210	(ibmy) queue=parallel;;
1211	(lcsgib) queue=bigq;;
1212	(lcsgih) queue=bigq;;
1213	(lctit) queue=RAM64GB;;
1214	(nech) queue=none;;
1215	(necriam) queue=SP;;
1216	(unics) queue=unics;;
1217	esac
1218	fi
1219
1220
1221	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1222	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1223	# ERMITTELN
1224	(( i = 0 ))
1225	while (( i < iin ))
1226	do
1227	(( i = i + 1 ))
1228	(( maxcycle = 0 ))
1229
1230	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1231	if [[ "${actionin[$i]}" = di ]]
1232	then
1233	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1234	# REM-MASCHINE AUSWERTEN
1235	eval filename=${pathin[$i]}/${endin[$i]}
1236	else
1237	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1238	# REM-MASCHINE AUSWERTEN
1239	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1240	fi
1241
1242	# PRUEFEN AUF VORHANDENSEIN
1243	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1244	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1245	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1246	then
1247	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1248	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1249	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1250	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1251	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1252	if [[ "${transin[$i]}" != "locopt" ]]
1253	then
1254	printf "\n\n +++ INPUT-file: "
1255	if [[ "${extin[$i]}" = "" ]]
1256	then
1257	printf "\n $filename"
1258	else
1259	printf "\n $filename.${extin[$i]}"
1260	fi
1261	printf "\n does not exist\n"
1262	locat=input; exit
1263	else
1264	transin[$i]="unavailable"
1265	fi
1266	else
1267
1268	# ZYKLUSNUMMER FESTSTELLEN
1269	ls -1 -d $filename > filelist 2>/dev/null
1270	ls -1 -d $filename.* >> filelist 2>/dev/null
1271	while read zeile
1272	do
1273	cycle=$(print $zeile \| cut -f2 -d".")
1274	if [[ "$cycle" = "$zeile" ]]
1275	then
1276	(( icycle = 0 ))
1277	elif [[ "$cycle" = "${extin[$i]}" ]]
1278	then
1279	(( icycle = 0 ))
1280	else
1281	(( icycle = $cycle ))
1282	fi
1283	if (( icycle > maxcycle ))
1284	then
1285	(( maxcycle = icycle ))
1286	file_to_be_used=$zeile
1287	fi
1288	done <filelist
1289	rm filelist
1290
1291	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1292	if (( maxcycle > 0 ))
1293	then
1294	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1295	then
1296	filename=${filename}.$maxcycle.${extin[$i]}
1297	else
1298	filename=${filename}.$maxcycle
1299	fi
1300	else
1301	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1302	then
1303	filename=${filename}.${extin[$i]}
1304	fi
1305	fi
1306
1307	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1308	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1309	absnamein[$i]=$filename
1310	if (( maxcycle > 0 ))
1311	then
1312	if [[ "${actionin[$i]}" = di ]]
1313	then
1314	frelin[$i]=${endin[$i]}.$maxcycle
1315	else
1316	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1317	fi
1318	else
1319	if [[ "${actionin[$i]}" = di ]]
1320	then
1321	frelin[$i]=${endin[$i]}
1322	else
1323	frelin[$i]=${afname}${endin[$i]}
1324	fi
1325	fi
1326
1327	fi
1328	done
1329
1330
1331	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1332	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1333	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1334	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1335	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1336	(( i = 0 ))
1337	while (( i < iout ))
1338	do
1339	(( i = i + 1 ))
1340	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1341	then
1342	if [[ "${actionout[$i]}" = tr ]]
1343	then
1344	actionout[$i]=""
1345	elif [[ "${actionout[$i]}" = trpe ]]
1346	then
1347	actionout[$i]=pe
1348	elif [[ "${actionout[$i]}" = tra ]]
1349	then
1350	actionout[$i]=a
1351	fi
1352	(( maxcycle = 0 ))
1353	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1354	eval catalogname=${pathout[$i]}
1355	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1356	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1357	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1358	then
1359
1360	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1361	if cat /dev/null > $filename
1362	then
1363	rm $filename
1364	else
1365
1366	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1367	if [[ ! -d $catalogname ]]
1368	then
1369	if mkdir -p $catalogname
1370	then
1371	printf "\n\n *** directory:"
1372	printf "\n $catalogname"
1373	printf "\n was created\n"
1374	else
1375	printf "\n\n +++ OUTPUT-file:"
1376	printf "\n $filename"
1377	printf "\n cannot be created, because directory does not exist"
1378	printf "\n and cannot be created either"
1379	printf "\n"
1380	locat=output ; exit
1381	fi 2>/dev/null
1382	else
1383	printf "\n\n +++ OUTPUT-file:"
1384	printf "\n $filename"
1385	printf "\n cannot be created, although directory exists"
1386	printf "\n"
1387	locat=output ; exit
1388	fi
1389	fi 2>/dev/null
1390	else
1391
1392	# ZYKLUSNUMMER FESTSTELLEN
1393	ls -1 -d $filename > filelist 2>/dev/null
1394	ls -1 -d $filename.* >> filelist 2>/dev/null
1395	while read zeile
1396	do
1397	cycle=$(print $zeile \| cut -f2 -d".")
1398	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1399	then
1400	(( icycle = 1 ))
1401	else
1402	(( icycle = $cycle + 1 ))
1403	fi
1404	if (( icycle > maxcycle ))
1405	then
1406	(( maxcycle = icycle ))
1407	fi
1408	done <filelist
1409	rm filelist
1410	fi
1411
1412	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1413	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1414	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1415	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1416	if [[ "${actionout[$i]}" != a ]]
1417	then
1418	if (( maxcycle > 0 ))
1419	then
1420	filename=${filename}.$maxcycle
1421	if cat /dev/null > $filename
1422	then
1423	rm $filename
1424	else
1425	printf "\n +++ OUTPUT-file:"
1426	printf "\n $filename"
1427	printf "\n cannot be created"
1428	locat=output ; exit
1429	fi
1430	fi
1431	else
1432	(( maxcycle = maxcycle - 1 ))
1433	if (( maxcycle > 0 ))
1434	then
1435	filename=${filename}.$maxcycle
1436	fi
1437	fi
1438
1439	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1440	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1441	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1442	pathout[$i]=$filename
1443	if (( maxcycle > 0 ))
1444	then
1445	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1446	else
1447	frelout[$i]=${fname}${endout[$i]}
1448	fi
1449
1450	fi
1451	done
1452
1453
1454	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1455	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1456	then
1457	if [[ "$dvr_inc" = "" ]]
1458	then
1459	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1460	printf "\n This is required for the dvrp_graphics package.\n"
1461	locat=dvr; exit
1462	fi
1463	if [[ "$dvr_lib" = "" ]]
1464	then
1465	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1466	printf "\n This is required for the dvrp_graphics package.\n"
1467	locat=dvr; exit
1468	fi
1469	fi
1470
1471
1472	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1473	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1474	# UEBERSETZT ZU WERDEN)
1475	if [[ "$mainprog" = "" && "$executable" = "" ]]
1476	then
1477	printf "\n +++ neither main program nor executable defined"
1478	locat=source; exit
1479	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1480	then
1481	printf "\n +++ main program as well as executable defined"
1482	locat=source; exit
1483	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1484	then
1485	do_compile=false
1486	fi
1487
1488
1489	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1490	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1491	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1492	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1493	then
1494	rm -rf SOURCES_FOR_RUN_$fname
1495	mkdir SOURCES_FOR_RUN_$fname
1496	fi
1497
1498
1499	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1500	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1501	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1502	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1503	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1504	then
1505
1506	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1507	[[ "$source_list" = WP ]] && source_list=WRITE_PERMIT
1508
1509
1510	# EVTL. ZU UEBERSETZENDE PROGRAMMTEILE DADURCH BESTIMMEN, DASS GEPRUEFT
1511	# WIRD, WELCHE DATEIEN WRITE-PERMIT BESITZEN (DATEIEN SOLLTEN DESHALB
1512	# UNTER RCS-KONTROLLE STEHEN). MIT DER VARIABLEN EXCLUDE KOENNEN
1513	# BESTIMMTE DATEIEN GRUNDSAETZLICH VON DER UEBERSETZUNG AUSGESCHLOSSEN
1514	# WERDEN. DIES IST NUR BEI MANUELLEM START VON MRUN DURCH DEN BENUTZER
1515	# MOEGLICH, DA BEI AUTOMATISCHEN RESTARTS TEST DURCH DIE TATSAECHLICH
1516	# ZU UBERSETZENDEN DATEIEN ERSETZT IST.
1517	# ALLE ERMITTELTEN DATEIEN WERDEN IM VERZEICHNIS SOURCES_FOR_RUN_...
1518	# GESAMMELT
1519	if [[ "$source_list" = WRITE_PERMIT ]]
1520	then
1521
1522	source_list=""
1523	cd $source_path
1524
1525
1526	# ALLE MOEGLICHEN QUELLCODEDATEIEN AUFLISTEN
1527	Names=$(ls -1 *.f90 2>&1)
1528	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && Filenames="$Names"
1529	Names=$(ls -1 *.F90 2>&1)
1530	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && Filenames="$Filenames $Names"
1531	Names=$(ls -1 *.F 2>&1)
1532	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && Filenames="$Filenames $Names"
1533	Names=$(ls -1 *.f 2>&1)
1534	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && Filenames="$Filenames $Names"
1535	Names=$(ls -1 *.c 2>&1)
1536	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && Filenames="$Filenames $Names"
1537
1538
1539	# DATEIEN MIT WRITE-PERMIT NACH SOURCES_FOR_RUN_... KOPIEREN
1540	for dateiname in $Filenames
1541	do
1542	if [[ -w $dateiname ]]
1543	then
1544	if [[ "$exclude" = "" \|\| $(echo $exclude \| grep -c $dateiname) = 0 ]]
1545	then
1546	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1547	source_list=$source_list"$dateiname "
1548	fi
1549	fi
1550	done
1551
1552	cd - > /dev/null
1553
1554
1555	elif [[ "$source_list" = LOCALLY_MODIFIED ]]
1556	then
1557
1558	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1559	source_list=""
1560	cd $source_path
1561
1562
1563	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1564	if [[ ! -d .svn ]]
1565	then
1566	printf "\n\n +++ source directory"
1567	printf "\n \"$source_path\" "
1568	printf "\n is not under control of \"subversion\"."
1569	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1570	fi
1571
1572
1573	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1574	Filenames=""
1575	svn status > tmp_mrun
1576	while read line
1577	do
1578	firstc=`echo $line \| cut -c1`
1579	if [[ $firstc = M \|\| $firstc = "?" ]]
1580	then
1581	Name=`echo "$line" \| cut -c8-`
1582	extension=`echo $Name \| cut -d. -f2`
1583	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1584	then
1585	Filenames="$Filenames "$Name
1586	fi
1587	fi
1588	done < tmp_mrun
1589
1590
1591	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1592	for dateiname in $Filenames
1593	do
1594	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1595	source_list=$source_list"$dateiname "
1596	done
1597
1598	cd - > /dev/null
1599
1600
1601	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1602	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1603	# VORHANDEN
1604	elif [[ "$source_list" != "" && $restart_run != true ]]
1605	then
1606
1607	cd $source_path
1608
1609	for filename in $source_list
1610	do
1611
1612	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1613	if [[ $(print $filename \| grep -c "/") != 0 ]]
1614	then
1615	printf "\n +++ source code file: $filename"
1616	printf "\n must not contain (\"/\") "
1617	locat=source; exit
1618	fi
1619
1620	if [[ ! -f $filename ]]
1621	then
1622	printf "\n +++ source code file: $filename"
1623	printf "\n does not exist"
1624	locat=source; exit
1625	else
1626	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1627	fi
1628
1629	done
1630
1631	cd - > /dev/null
1632
1633	fi
1634
1635
1636	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1637	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1638	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1639	if [[ $restart_run != true ]]
1640	then
1641
1642	if [[ ! -f "$source_path/$mainprog" ]]
1643	then
1644	printf "\n\n +++ main program: $mainprog"
1645	printf "\n does not exist in source directory"
1646	printf "\n \"$source_path\"\n"
1647	locat=source; exit
1648	else
1649	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1650	then
1651	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1652	source_list=${mainprog}" $source_list"
1653	fi
1654	fi
1655	fi
1656
1657
1658	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1659	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1660	if [[ "$restart_run" != true ]]
1661	then
1662	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1663	if [[ ! -f $makefile ]]
1664	then
1665	printf "\n +++ file \"$makefile\" does not exist"
1666	locat=make; exit
1667	else
1668	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1669	fi
1670	fi
1671
1672
1673	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1674	if [[ $restart_run != true && "$add_source_path" != "" ]]
1675	then
1676
1677	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1678	if [[ ! -d $add_source_path ]]
1679	then
1680	printf "\n\n +++ WARNING: additional source code directory"
1681	printf "\n \"$add_source_path\" "
1682	printf "\n does not exist or is not a directory."
1683	printf "\n No source code will be used from this directory!\n"
1684	add_source_path=""
1685	sleep 3
1686	else
1687
1688	cd $add_source_path
1689	found=false
1690
1691	Names=$(ls -1 *.f90 2>&1)
1692	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1693	Names=$(ls -1 *.F90 2>&1)
1694	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1695	Names=$(ls -1 *.F 2>&1)
1696	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1697	Names=$(ls -1 *.f 2>&1)
1698	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1699	Names=$(ls -1 *.c 2>&1)
1700	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1701
1702	cd - > /dev/null
1703	cd SOURCES_FOR_RUN_$fname
1704
1705	# COPY MAKEFILE IF EXISTING
1706	if [[ -f $add_source_path/Makefile ]]
1707	then
1708	printf "\n\n *** user Makefile from directory"
1709	printf "\n \"$add_source_path\" is used \n"
1710	sleep 1
1711	cp $add_source_path/Makefile .
1712	fi
1713
1714	for dateiname in $AddFilenames
1715	do
1716	if [[ -f $dateiname ]]
1717	then
1718	printf "\n +++ source code file \"$dateiname\" found in additional"
1719	printf "\n source code directory \"$add_source_path\" "
1720	printf "\n but was also given with option \"-s\" which means that it should be taken"
1721	printf "\n from directory \"$source_path\"."
1722	locat=source; exit
1723	fi
1724
1725	cp $add_source_path/$dateiname .
1726	source_list="$source_list $dateiname"
1727
1728	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1729	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1730	then
1731	printf "\n\n +++ user file \"$dateiname\" "
1732	printf "\n is not listed in Makefile \n"
1733	locat=source; exit
1734	else
1735
1736	# Default User-Interface von der Liste entfernen, falls Datei
1737	# ein User-Interface enthaelt
1738	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1739	# then
1740	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1741	# then
1742	# rm -rf user_interface.f90
1743	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1744	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1745	# printf "\n since a user-interface is found in file"
1746	# printf "\n \"$add_source_path/$dateiname\" \n"
1747	# sleep 3
1748	# else
1749	if [[ $found = false ]]
1750	then
1751	found=true
1752	printf "\n\n *** following user file(s) added to the"
1753	printf " files to be translated:\n "
1754	fi
1755	printf "$dateiname "
1756	sleep 0.5
1757	fi
1758	done
1759	[[ $found = true ]] && printf "\n"
1760	cd - > /dev/null
1761	fi
1762	fi
1763
1764
1765	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1766	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1767	if [[ $restart_run != true && -n $package_list ]]
1768	then
1769
1770	cd $source_path
1771
1772	for package in $package_list
1773	do
1774
1775	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1776
1777	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1778	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1779	# LIEFERT
1780	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1781
1782
1783	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1784	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1785	for source_list_name in $package_source_list
1786	do
1787	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1788	then
1789
1790	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1791	ending=`echo $source_list_name \| cut -f2 -d.`
1792	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1793	then
1794	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1795	source_list="$source_list $source_list_name"
1796	fi
1797	fi
1798	done
1799	done
1800
1801	cd - > /dev/null
1802	fi
1803
1804
1805	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1806	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1807	# if [[ "$restart_run" != true ]]
1808	# then
1809	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1810	# if [[ ! -f $makefile ]]
1811	# then
1812	# printf "\n +++ file \"$makefile\" does not exist"
1813	# locat=make; exit
1814	# else
1815	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1816	# fi
1817	# fi
1818
1819	fi # do_compile=true
1820
1821
1822	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1823	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1824	if [[ $do_compile = true ]]
1825	then
1826
1827	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1828	# ZUSAMMENSETZEN
1829	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1830	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1831	then
1832	cpp_options="${cpp_options},-D__ibm=__ibm"
1833	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1834	then
1835	cpp_options="$cpp_options -D__nec"
1836	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1837	then
1838	cpp_options="$cpp_options -D__lc"
1839	else
1840	cpp_options="$cpp_options -D__$localhost"
1841	fi
1842
1843	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1844	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1845	then
1846	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1847	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1848	else
1849	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1850	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1851	fi
1852
1853	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1854	if [[ -n $package_list ]]
1855	then
1856	for package in $package_list
1857	do
1858	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1859	then
1860	if [[ $package != "dvrp_graphics+1PE" ]]
1861	then
1862	cpp_options="${cpp_options},-D__$package=__$package"
1863	else
1864	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1865	export use_seperate_pe_for_dvrp_output=true
1866	fi
1867	else
1868	if [[ $package != "dvrp_graphics+1PE" ]]
1869	then
1870	cpp_options="$cpp_options -D__$package"
1871	else
1872	cpp_options="$cpp_options -D__dvrp_graphics"
1873	export use_seperate_pe_for_dvrp_output=true
1874	fi
1875	fi
1876	done
1877	fi
1878
1879	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1880	if [[ -n $cpp_opts ]]
1881	then
1882	for popts in $cpp_opts
1883	do
1884	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1885	then
1886	cpp_options="${cpp_options},-D__$popts=__$popts"
1887	else
1888	cpp_options="$cpp_options -D__$popts"
1889	fi
1890	done
1891	fi
1892
1893	else
1894
1895
1896	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1897	if [[ $do_remote = false ]]
1898	then
1899	if [[ ! -f $executable ]]
1900	then
1901	printf "\n +++ executable file: $executable"
1902	printf "\n does not exist"
1903	locat=executable; exit
1904	fi
1905	fi
1906	fi
1907
1908
1909	# JOBMODUS FESTSTELLEN
1910	if [[ "$ENVIRONMENT" = BATCH && $localhost != lctit \|\| "$QUEUE" != interactive && $localhost = lctit ]]
1911	then
1912	jobmo=BATCH
1913	else
1914	jobmo=INTERACTIVE
1915	fi
1916
1917
1918	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1919	# DURCH BENUTZER ANDERWEITIG VEREINBART
1920	if [[ "$compiler_name" = "" ]]
1921	then
1922
1923	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
1924	locat=compiler_name; exit
1925
1926	fi
1927
1928
1929	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
1930	[[ $localhost = necriam ]] && compiler_name=mpif90
1931
1932
1933
1934	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
1935	kennung=$RANDOM
1936	if [[ "$tmp_user_catalog" = "" ]]
1937	then
1938	if [[ $localhost = ibmh ]]
1939	then
1940	tmp_user_catalog=$SCRATCH
1941	elif [[ $localhost = nech ]]
1942	then
1943	tmp_user_catalog=$WRKSHR
1944	else
1945	tmp_user_catalog=/tmp
1946	fi
1947	fi
1948	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
1949
1950
1951	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
1952	# BESTIMMEN
1953	if [[ "$tmp_data_catalog" = "" ]]
1954	then
1955	if [[ $localhost = ibmb ]]
1956	then
1957	tmp_data_catalog=$WORK/mrun_restart_data
1958	elif [[ $localhost = nech ]]
1959	then
1960	tmp_data_catalog=$WRKSHR/mrun_restart_data
1961	else
1962	tmp_data_catalog=/tmp/mrun_restart_data
1963	fi
1964	fi
1965
1966
1967	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
1968	# ERSETZEN
1969	if [[ $do_remote = false && $do_compile = true ]]
1970	then
1971	eval fopts=\"$fopts\"
1972	eval lopts=\"$lopts\"
1973	fi
1974
1975
1976
1977	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
1978	fopts="$fopts $netcdf_inc $dvr_inc"
1979	lopts="$lopts $netcdf_lib $dvr_lib"
1980	ROPTS="$ropts"
1981	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxt4 ) && -n $numprocs ]]
1982	then
1983	XOPT="-X $numprocs"
1984	fi
1985
1986
1987
1988	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
1989	# GRAMM BENOETIGT
1990	done=false
1991	while [[ $done = false ]]
1992	do
1993	cputime=$cpumax
1994	if (( $cputime == 0 ))
1995	then
1996	if [[ $do_batch = true ]]
1997	then
1998	printf "\n +++ cpu-time is undefined"
1999	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
2000	printf "\n >>> "
2001	read cputime 1>/dev/null 2>&1
2002	else
2003	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
2004	fi
2005	else
2006	done=true
2007	fi
2008	cpumax=$cputime
2009	done
2010
2011	(( minuten = cputime / 60 ))
2012	(( sekunden = cputime - minuten * 60 ))
2013
2014
2015	# PRUEFEN DER KERNSPEICHERANFORDERUNG
2016	if [[ $do_batch = true ]]
2017	then
2018	done=false
2019	while [[ $done = false ]]
2020	do
2021	if (( memory == 0 ))
2022	then
2023	printf "\n +++ memory demand is undefined"
2024	printf "\n >>> Please type memory in MByte per process as INTEGER:"
2025	printf "\n >>> "
2026	read memory 1>/dev/null 2>&1
2027	else
2028	done=true
2029	fi
2030	done
2031	fi
2032
2033
2034	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
2035	if [[ $do_remote = true && -z $remote_username ]]
2036	then
2037	while [[ -z $remote_username ]]
2038	do
2039	printf "\n +++ username on remote host \"$host\" is undefined"
2040	printf "\n >>> Please type username:"
2041	printf "\n >>> "
2042	read remote_username
2043	done
2044	mc="$mc -u$remote_username"
2045	fi
2046
2047
2048	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
2049	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2050	then
2051	[[ "$mpilib" = "" ]] && export mpilib=mpt
2052	fi
2053
2054
2055
2056	###########################################################################
2057	# HEADER-AUSGABE
2058	###########################################################################
2059
2060
2061	calltime=$(date)
2062	printf "\n"
2063	# [[ $silent = false ]] && clear
2064	printf "#--------------------------------------------------------------# \n"
2065	printf "\| $version$calltime \| \n"
2066	printf "\| \| \n"
2067	spalte1="called on:"; spalte2=$localhost_realname
2068	printf "\| $spalte1$spalte2 \| \n"
2069	if [[ $local_compile = false ]]
2070	then
2071	if [[ $do_remote = true ]]
2072	then
2073	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2074	else
2075	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2076	fi
2077	else
2078	spalte1="compiling test only!"; spalte2=""
2079	fi
2080	printf "\| $spalte1$spalte2 \| \n"
2081	if [[ -n $numprocs ]]
2082	then
2083	spalte1="number of PEs:"; spalte2=$numprocs
2084	printf "\| $spalte1$spalte2 \| \n"
2085	fi
2086	if [[ -n $tasks_per_node ]]
2087	then
2088	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2089	printf "\| $spalte1$spalte2 \| \n"
2090	fi
2091	if [[ $threads_per_task != 1 ]]
2092	then
2093	spalte1="threads per task:"; spalte2="$threads_per_task"
2094	printf "\| $spalte1$spalte2 \| \n"
2095	fi
2096	printf "\| \| \n"
2097	if [[ $do_compile = true ]]
2098	then
2099	spalte1=cpp-directives:; spalte2=$cpp_options
2100	printf "\| $spalte1$spalte2 \| \n"
2101	zeile=$(echo "$cpp_options" \| cut -c41-)
2102	while [[ "$zeile" != "" ]]
2103	do
2104	spalte1=""
2105	spalte2=$zeile
2106	printf "\| $spalte1$spalte2 \| \n"
2107	zeile=$(echo "$zeile" \| cut -c41-)
2108	done
2109
2110	spalte1=compiler-options:; spalte2="$fopts"
2111	printf "\| $spalte1$spalte2 \| \n"
2112	zeile=$(echo "$fopts" \| cut -c41-)
2113	while [[ "$zeile" != "" ]]
2114	do
2115	spalte1=""
2116	spalte2=$zeile
2117	printf "\| $spalte1$spalte2 \| \n"
2118	zeile=$(echo "$zeile" \| cut -c41-)
2119	done
2120
2121	spalte1=linker-options:; spalte2=$lopts
2122	printf "\| $spalte1$spalte2 \| \n"
2123	zeile=$(echo "$lopts" \| cut -c41-)
2124	while [[ "$zeile" != "" ]]
2125	do
2126	spalte1=""
2127	spalte2=$zeile
2128	printf "\| $spalte1$spalte2 \| \n"
2129	zeile=$(echo "$zeile" \| cut -c41-)
2130	done
2131
2132	spalte1="main program":; spalte2=$mainprog
2133	printf "\| $spalte1$spalte2 \| \n"
2134	else
2135	spalte1=executable:; spalte2=$executable
2136	printf "\| $spalte1$spalte2 \| \n"
2137	fi
2138	printf "\| \| \n"
2139	spalte1="base name of files":; spalte2=$fname
2140	printf "\| $spalte1$spalte2 \| \n"
2141	if [[ $fname != $afname ]]
2142	then
2143	spalte1="base name of input files":; spalte2=$afname
2144	printf "\| $spalte1$spalte2 \| \n"
2145	fi
2146	spalte1="INPUT control list":; spalte2=$input_list
2147	printf "\| $spalte1$spalte2 \| \n"
2148	spalte1="OUTPUT control list":; spalte2=$output_list
2149	printf "\| $spalte1$spalte2 \| \n"
2150
2151	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2152	then
2153	spalte1="memory demand / PE":; spalte2="$memory MB"
2154	printf "\| $spalte1$spalte2 \| \n"
2155	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2156	printf "\| $spalte1$spalte2 \| \n"
2157	fi
2158
2159	if [[ $do_compile = true ]]
2160	then
2161	printf "\| \| \n"
2162	printf "\| Files to be compiled: \| \n"
2163	zeile=$source_list
2164	while [[ "$zeile" != "" ]]
2165	do
2166	spalte3=$zeile
2167	printf "\| $spalte3 \| \n"
2168	zeile=$(echo "$zeile" \| cut -c61-)
2169	done
2170	fi
2171	printf "#--------------------------------------------------------------#"
2172
2173
2174
2175	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2176	if [[ $do_trace = true ]]
2177	then
2178	(( i = 0 ))
2179	while (( i < iin ))
2180	do
2181	(( i = i + 1 ))
2182	if (( i == 1 ))
2183	then
2184	printf "\n\n >>> INPUT-file assignments:\n"
2185	fi
2186	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2187	done
2188	(( i = 0 ))
2189	while (( i < iout ))
2190	do
2191	(( i = i + 1 ))
2192	if (( i == 1 ))
2193	then
2194	printf "\n\n >>> OUTPUT-file assignments:\n"
2195	fi
2196	printf "\n ${localout[$i]} : ${pathout[$i]}"
2197	done
2198	(( i = 0 ))
2199	while (( i < iic ))
2200	do
2201	(( i = i + 1 ))
2202	if (( i == 1 ))
2203	then
2204	printf "\n\n >>> INPUT-commands:\n"
2205	fi
2206	printf "\n ${in_command[$i]}"
2207	done
2208	(( i = 0 ))
2209	while (( i < ioc ))
2210	do
2211	(( i = i + 1 ))
2212	if (( i == 1 ))
2213	then
2214	printf "\n\n >>> OUTPUT-commands:\n"
2215	fi
2216	printf "\n ${out_command[$i]}"
2217	done
2218	fi
2219
2220
2221	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2222	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2223	then
2224	antwort=dummy
2225	printf "\n\n"
2226	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2227	do
2228	printf " >>> everything o.k. (y/n) ? "
2229	read antwort
2230	done
2231	if [[ $antwort = n \|\| $antwort = N ]]
2232	then
2233	locat=user_abort; (( iec = 0 )); exit
2234	fi
2235	if [[ $do_batch = true ]]
2236	then
2237	printf " >>> batch-job will be created and submitted"
2238	else
2239	if [[ $local_compile = false ]]
2240	then
2241	printf " >>> MRUN will now continue to execute on this machine"
2242	else
2243	printf " >>> a test compilation will now be carried out on this machine"
2244	fi
2245	fi
2246	fi
2247
2248
2249
2250
2251	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2252	# CHENDE AKTIONEN DURCHGEFUEHRT
2253	if [[ $do_batch = false ]]
2254	then
2255
2256
2257	# TEMPORAEREN KATALOG ERZEUGEN
2258	mkdir -p $TEMPDIR
2259	chmod go+rx $TEMPDIR
2260	tmpcreate=true
2261
2262
2263	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2264	# TEMPORAERES VERZEICHNIS KOPIEREN
2265	if [[ $do_compile = true ]]
2266	then
2267
2268	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2269	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2270	if [[ $localhost = nech ]]
2271	then
2272	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2273	if mkdir -p $TEMPDIR_COMPILE
2274	then
2275	printf "\n *** \"$TEMPDIR_COMPILE\" "
2276	printf "\n is generated as temporary directory for cross compiling\n"
2277	else
2278	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2279	printf "\n needed for cross compilation failed"
2280	locat=compile
2281	exit
2282	fi
2283	else
2284	TEMPDIR_COMPILE=$TEMPDIR
2285	fi
2286
2287
2288	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2289	line=""
2290	grep "%depository_path" $config_file > tmp_mrun
2291	while read line
2292	do
2293	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2294	then
2295	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2296	then
2297	global_depository_path=`echo $line \| cut -d" " -s -f2`
2298	fi
2299	fi
2300	done < tmp_mrun
2301
2302	line=""
2303	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2304	while read line
2305	do
2306	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2307	then
2308	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2309	then
2310	local_depository_path=`echo $line \| cut -d" " -s -f2`
2311	fi
2312	fi
2313	done < tmp_mrun
2314
2315	if [[ "$local_depository_path" = "" ]]
2316	then
2317	if [[ "$global_depository_path" != "" ]]
2318	then
2319	local_depository_path=$global_depository_path
2320	else
2321	printf "\n\n +++ no depository path found in configuration file"
2322	printf "\n for local host \"$localhost\" "
2323	printf "\n please set \"\%depository_path\" in configuration file\n"
2324	locat=config_file; exit
2325	fi
2326	fi
2327	eval local_depository_path=$local_depository_path
2328	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2329	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2330
2331
2332	basename=`print $mainprog \| cut -f1 -d"."`
2333	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2334	if [[ ! -f $make_depository ]]
2335	then
2336	printf "\n"
2337	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2338	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2339	else
2340	cp $make_depository $TEMPDIR_COMPILE
2341	cd $TEMPDIR_COMPILE
2342	tar -xf $make_depository > /dev/null 2>&1
2343	cd - > /dev/null
2344	fi
2345
2346	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2347
2348	# FALLS USER-INTERFACE VORHANDEN UND AUF DATEI MIT ANDEREM NAMEN
2349	# ALS user_interface.f90 LIEGT, DIESEN GEAENDERTEN NAMEN INS
2350	# MAKEFILE EINTRAGEN
2351	# cd $TEMPDIR_COMPILE
2352	# interface_file=`grep -l "END SUBROUTINE user_parin" $source_list`
2353	# if [[ "$interface_file" != "" ]]
2354	# then
2355	# interface_file=`echo $interface_file \| cut -d"." -f1`
2356	# mv Makefile Makefile_old
2357	# sed "s/user_interface/$interface_file/g" Makefile_old > Makefile
2358	# fi
2359	# cd - > /dev/null
2360	else
2361	cp $executable ${TEMPDIR}/a.out
2362	fi
2363
2364
2365	# WECHSEL IN TEMPORAEREN KATALOG
2366	cd $TEMPDIR
2367	printf "\n *** changed to temporary directory: $TEMPDIR"
2368
2369
2370	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2371	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2372	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2373	# ERMITTELN
2374	(( i = 0 ))
2375	while (( i < iout ))
2376	do
2377	(( i = i + 1 ))
2378	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2379	then
2380	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2381	else
2382	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2383	fi
2384	done
2385
2386
2387	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2388	if [[ $do_compile = true ]]
2389	then
2390
2391
2392	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2393	printf "\n\n\n *** compilation starts \n$striche\n"
2394	printf " *** compilation with make using following options:\n"
2395	printf " make depository: $make_depository"
2396	printf " compilername: $compiler_name\n"
2397	printf " options: $fopts\n"
2398	printf " preprocessor-directives: $cpp_options \n"
2399	printf " linker-options: $lopts \n"
2400	printf " source code files: $source_list \n"
2401
2402	if [[ $localhost = nech ]]
2403	then
2404	ssh 136.172.44.192 -l $usern ". /SX/opt/etc/initsx.sh; cd \$HOME/work/${usern}.$kennung; sxmake -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2405	cp $TEMPDIR_COMPILE/a.out .
2406	[[ $? != 0 ]] && compile_error=true
2407	rm -rf $TEMPDIR_COMPILE
2408	elif [[ $localhost = ibmh ]]
2409	then
2410	printf " compiler is called via ssh on \"plogin1\" \n"
2411	ssh plogin1 -l $usern "export PATH=/sw/ibm/xlf/12.1.0.3/usr/bin:$PATH; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2412	[[ ! -f a.out ]] && compile_error=true
2413	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2414	elif [[ $localhost = lcsgib ]]
2415	then
2416	printf " compiler is called via ssh on \"bicegate\" using module \"$mpilib\" \n"
2417	ssh 130.73.232.103 -l $usern ". /usr/share/modules/init/bash; module load $mpilib; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2418	[[ ! -f a.out ]] && compile_error=true
2419	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2420	elif [[ $localhost = lcsgih ]]
2421	then
2422	printf " compiler is called via ssh on \"hicegate2\" using module \"$mpilib\" \n"
2423	ssh 130.75.4.103 -l $usern ". /usr/share/modules/init/bash; module load $mpilib; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2424	[[ ! -f a.out ]] && compile_error=true
2425	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2426	else
2427	[[ $localhost = lctit ]] && export LM_LICENSE_FILE=27050@tggls
2428	make -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2429	fi
2430
2431	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2432	then
2433	printf "\n +++ error occured while compiling or linking"
2434	locat=compile
2435
2436	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
2437	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
2438	# then
2439	exit
2440	# else
2441	# locat=normal
2442	# fi
2443	else
2444	printf "$striche\n *** compilation finished \n"
2445	fi
2446	fi
2447
2448
2449	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2450	if [[ $local_compile = true ]]
2451	then
2452	cd $HOME
2453	rm -rf $TEMPDIR
2454	locat=local_compile; exit
2455	fi
2456
2457
2458	# BEREITSTELLEN DER INPUT-DATEIEN
2459	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2460	(( i = 0 ))
2461	while (( i < iin ))
2462	do
2463	(( i = i + 1 ))
2464	if (( i == 1 ))
2465	then
2466	printf "\n\n *** providing INPUT-files:\n$striche"
2467	fi
2468
2469
2470	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2471	if [[ "${transin[$i]}" = unavailable ]]
2472	then
2473	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2474	then
2475	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2476	printf "\n is not available!"
2477	else
2478	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2479	printf "\n is not available!"
2480	fi
2481	continue
2482	fi
2483
2484	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2485	files_for_pes=false; datentyp=file
2486	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2487	then
2488	files_for_pes=true; datentyp=directory
2489	actionin[$i]=""
2490	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2491	then
2492	actionin[$i]=""
2493	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2494	then
2495	files_for_pes=true; datentyp=directory
2496	actionin[$i]="ar"
2497	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2498	then
2499	actionin[$i]="ar"
2500	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2501	then
2502	files_for_pes=true; datentyp=directory
2503	actionin[$i]="fl"
2504	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2505	then
2506	actionin[$i]="fl"
2507	fi
2508
2509	if [[ $files_for_pes = true ]]
2510	then
2511	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
2512	else
2513	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
2514	fi
2515
2516	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
2517	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
2518	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
2519	# SERVER ZU HOLEN
2520	if [[ "${actionin[$i]}" = fl ]]
2521	then
2522	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
2523	if [[ $files_for_pes = false ]]
2524	then
2525	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
2526	then
2527	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
2528	got_tmp[$i]=true
2529	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2530	then
2531	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2532	printf "\n *** trying to use backup copy in \"$WORK\" "
2533	cp $WORK/${frelin[$i]} ${localin[$i]}
2534	else
2535	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2536	printf "\n or \"$tmp_data_catalog\" does not exist!"
2537	printf "\n *** trying to get copy from archive"
2538	actionin[$i]=ar
2539	fi
2540	else
2541	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
2542	then
2543	mkdir ${localin[$i]}
2544	cd $tmp_data_catalog/${frelin[$i]}
2545	for file in $(ls *)
2546	do
2547	ln $file $TEMPDIR/${localin[$i]}
2548	done
2549	cd $TEMPDIR
2550	got_tmp[$i]=true
2551	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2552	then
2553	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2554	printf "\n *** trying to use backup copy in \"$WORK\" "
2555	cp -r $WORK/${frelin[$i]} ${localin[$i]}
2556	else
2557	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2558	printf "\n or \"$tmp_data_catalog\" does not exist!"
2559	printf "\n *** trying to get copy from archive"
2560	actionin[$i]=ar
2561	fi
2562	fi
2563	fi
2564
2565
2566	# DATEI LIEGT AUF ARCHIV-SERVER
2567	if [[ "${actionin[$i]}" = ar ]]
2568	then
2569
2570	if [[ $files_for_pes = false ]]
2571	then
2572	printf "\n file will be restored from archive-system ($archive_system)!"
2573	else
2574	printf "\n directory will be restored from archive-system ($archive_system)!"
2575	fi
2576
2577	file_restored=false
2578
2579	if [[ $archive_system = asterix ]]
2580	then
2581	do_stagein=true
2582	(( stagein_anz = 0 ))
2583	while [[ $do_stagein = true ]]
2584	do
2585	if [[ $files_for_pes = false ]]
2586	then
2587	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
2588	else
2589	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
2590	fi
2591	cat STAGEIN_OUTPUT
2592	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
2593	then
2594	file_restored=true
2595	do_stagein=false
2596	else
2597	(( stagein_anz = stagein_anz + 1 ))
2598	if (( stagein_anz == 10 ))
2599	then
2600	printf "\n +++ stagein stoped after 10 tries"
2601	locat=stage
2602	exit
2603	fi
2604	printf "\n +++ restoring from archive failed, trying again:"
2605	sleep 900
2606	fi
2607	done
2608	elif [[ $archive_system = DMF ]]
2609	then
2610	if [[ $files_for_pes = false ]]
2611	then
2612	printf "\n +++ restoring of single files impossible with $archive_system !\n"
2613	locat=DMF
2614	exit
2615	else
2616	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
2617	cp -r $ARCHIVE/${frelin[$i]} $PWD
2618	file_restored=true
2619	fi
2620	elif [[ $archive_system = tivoli ]]
2621	then
2622	if [[ $files_for_pes = false ]]
2623	then
2624	if [[ $localhost = ibmh ]]
2625	then
2626	ssh $usern@hdata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2627	else
2628	ssh $usern@bdata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2629	fi
2630	else
2631	(( inode = 0 ))
2632	while (( inode < nodes ))
2633	do
2634	if [[ $localhost = ibmh ]]
2635	then
2636	ssh $usern@hdata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2637	else
2638	ssh $usern@bdata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2639	fi
2640	(( inode = inode + 1 ))
2641	done
2642	fi
2643	file_restored=true
2644	elif [[ $archive_system = ut ]]
2645	then
2646	if [[ $files_for_pes = false ]]
2647	then
2648	cp $UT/${frelin[$i]} .
2649	else
2650	(( inode = 0 ))
2651	while (( inode < nodes ))
2652	do
2653	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
2654	(( inode = inode + 1 ))
2655	done
2656	fi
2657	file_restored=true
2658	else
2659	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
2660	locat=rearchive
2661	exit
2662	fi
2663
2664	if [[ $file_restored = true ]]
2665	then
2666
2667	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
2668	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
2669	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
2670	if [[ $files_for_pes = false ]]
2671	then
2672	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
2673	else
2674	mkdir $tmp_data_catalog/${frelin[$i]}
2675	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
2676	fi
2677	got_tmp[$i]=true
2678
2679	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
2680	mv ${frelin[$i]} ${localin[$i]}
2681
2682	fi
2683	fi
2684
2685
2686	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
2687	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
2688	then
2689
2690	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
2691	then
2692
2693	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
2694	printf "\n file will be provided for $numprocs processors"
2695	mkdir ${localin[$i]}
2696	ival=$numprocs
2697	(( ii = 0 ))
2698	while (( ii <= ival-1 ))
2699	do
2700	if (( ii < 10 ))
2701	then
2702	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
2703	elif (( ii < 100 ))
2704	then
2705	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
2706	elif (( ii < 1000 ))
2707	then
2708	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
2709	else
2710	cp ${absnamein[$i]} ${localin[$i]}/_$ii
2711	fi
2712	(( ii = ii + 1 ))
2713	done
2714
2715	else
2716
2717	if [[ $files_for_pes = true ]]
2718	then
2719
2720	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
2721	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
2722	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
2723	# PER MOVE UMBENANNT WERDEN
2724	printf "\n providing $numprocs files for the respective processors"
2725	mkdir ${localin[$i]}
2726	if [[ $link_local_input = true ]]
2727	then
2728	printf " using ln -f\n"
2729	cd ${absnamein[$i]}
2730	for file in $(ls *)
2731	do
2732	ln -f $file ${localin[$i]}
2733	done
2734	cd $TEMPDIR
2735	fi
2736	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
2737	if [[ ! -f "${localin[$i]}/_0000" ]]
2738	then
2739	if [[ $link_local_input = true ]]
2740	then
2741	printf " ln failed for .../_0000, using cp...\n"
2742	fi
2743	cp -r ${absnamein[$i]}/* ${localin[$i]}
2744	fi
2745
2746	else
2747	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
2748	if [[ $link_local_input = true ]]
2749	then
2750	printf " using ln -f\n"
2751	ln -f ${absnamein[$i]} ${localin[$i]}
2752	fi
2753	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
2754	if [[ ! -f "${localin[$i]}" ]]
2755	then
2756	if [[ $link_local_input = true ]]
2757	then
2758	printf " ln failed, using cp...\n"
2759	fi
2760	cp ${absnamein[$i]} ${localin[$i]}
2761	fi
2762	fi
2763	fi
2764	fi
2765
2766	done
2767	if (( i != 0 ))
2768	then
2769	printf "\n$striche\n *** all INPUT-files provided \n"
2770	fi
2771
2772
2773	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
2774	(( i = 0 ))
2775	while (( i < iic ))
2776	do
2777	(( i = i + 1 ))
2778	if (( i == 1 ))
2779	then
2780	printf "\n\n *** execution of INPUT-commands:\n$striche"
2781	fi
2782	printf "\n >>> ${in_command[$i]}"
2783	eval ${in_command[$i]}
2784	if (( i == iic ))
2785	then
2786	printf "\n$striche\n"
2787	fi
2788	done
2789
2790
2791	# VERBLEIBENDE CPU-ZEIT BERECHNEN
2792	cpurest=${cpumax}.
2793
2794
2795	# START DVR STREAMING SERVER
2796	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
2797	then
2798	if [[ "$dvr_server" != "" ]]
2799	then
2800
2801	printf "\n\n *** preparing the dvr streaming server configuration file"
2802
2803	# Check, if a dvr server is already running
2804	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
2805	if [[ "$running_dvrserver_id" != "" ]]
2806	then
2807
2808	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
2809	printf "\n This server is used instead starting a new one!"
2810	printf "\n If required, script \"process_dvr_output\" has to be run manually."
2811
2812	else
2813
2814	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
2815	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
2816	then
2817	cp ${PALM_BIN}/.dvrserver.config .
2818
2819	# Entering the BASEDIR, UID and GID into this file
2820	user_id=`id -u`
2821	group_id=`id -g`
2822	# & is needed as seperator, because TEMPDIR contains /
2823	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
2824	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
2825	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
2826	mv .dvrserver.3 .dvrserver.config
2827	rm .dvrserver.1 .dvrserver.2
2828
2829	# Start dvr server in background, get his id and print on terminal
2830	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
2831	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
2832	printf "\n *** streaming server with id=$dvrserver_id is started in background"
2833	local_dvrserver_running=.TRUE.
2834	else
2835	printf "\n +++ missing file \".dvrserver.config\" in directory:"
2836	printf "\n \"$PALM_BIN\" "
2837	locat=dvr
2838	exit
2839	fi
2840
2841	fi
2842
2843	else
2844	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
2845	fi
2846	fi
2847
2848
2849	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
2850	# LESEN VON PALM)
2851	cat > ENVPAR << %%END%%
2852	&envpar run_identifier = '$fname', host = '$localhost',
2853	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2854	maximum_cpu_time_allowed = ${cpumax}.,
2855	revision = '$global_revision',
2856	local_dvrserver_running = $local_dvrserver_running /
2857
2858	%%END%%
2859
2860
2861	# PROGRAMMSTART
2862	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
2863	PATH=$PATH:$TEMPDIR
2864
2865	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
2866	then
2867	if [[ "$ENVIRONMENT" = BATCH ]]
2868	then
2869	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
2870	then
2871	printf "\n +++ debug is allowed in interactive mode only"
2872	locat=debug
2873	exit
2874	fi
2875	fi
2876	if [[ $localhost = decalpha ]]
2877	then
2878	dxladebug a.out
2879	elif [[ $localhost = ibmb \|\| $localhost = ibmh ]]
2880	then
2881
2882	# SETUP THE IBM MPI ENVIRONMENT
2883	export MP_SHARED_MEMORY=yes
2884	export AIXTHREADS_SCOPE=S
2885	export OMP_NUM_THREADS=$threads_per_task
2886	export AUTHSTATE=files
2887	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
2888
2889	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
2890	export MP_ADAPTER_USE=shared
2891	export MP_CPU_USE=multiple
2892	export MP_TIMEOUT=1200
2893
2894	unset MP_TASK_AFFINITY
2895
2896	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
2897	#(( ii = 1 ))
2898	#while (( ii <= $numprocs ))
2899	#do
2900	# echo $localhost_realname >> hostfile
2901	# (( ii = ii + 1 ))
2902	#done
2903	#export MP_HOSTFILE=hostfile
2904
2905	if [[ "$LOADLBATCH" = yes ]]
2906	then
2907	totalview poe a.out $ROPTS
2908	else
2909	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
2910	export TVDSVRLAUNCHCMD=ssh
2911	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
2912	fi
2913	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
2914	then
2915	# CURRENTLY NO DEBUGGER ON LCSGI
2916	if [[ $run_coupled_model = true ]]
2917	then
2918	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
2919	locat=debug
2920	exit
2921	else
2922	echo "no_coupling" > runfile_atmos
2923	fi
2924	(( ii = $numprocs / $threads_per_task ))
2925	export OMP_NUM_THREADS=$threads_per_task
2926	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
2927	if [[ $threads_per_task != 1 ]]
2928	then
2929	printf "\n threads per task: $threads_per_task"
2930	fi
2931	printf "\n\n"
2932	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
2933	then
2934	# export MPI_LAUNCH_TIMEOUT=360
2935	if [[ "$totalview" = true ]]
2936	then
2937	printf "\n running totalview debugger"
2938	mpiexec_mpt -tv -n $ii ./a.out $ROPTS < runfile_atmos
2939	else
2940	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
2941	fi
2942	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
2943	then
2944	# ulimit -s 300000 # A too large stack size causes problems
2945	# export MV2_NUM_PORTS=2
2946	# export MV2_CPU_MAPPING=0:1:2:3
2947	mpiexec ./a.out $ROPTS < runfile_atmos
2948	fi
2949	else
2950	printf "\n +++ no debug available on \"$localhost\" "
2951	printf "\n or not implemented in mrun so far"
2952	locat=debug
2953	exit
2954	fi
2955	else
2956	if [[ -n $numprocs ]]
2957	then
2958
2959	# RUNNING THE PROGRAM ON PARALLEL MACHINES
2960	if [[ $(echo $host \| cut -c1-3) = ibm ]]
2961	then
2962	# SETUP THE IBM MPI ENVIRONMENT
2963	if [[ $host != ibmh ]]
2964	then
2965	export MP_SHARED_MEMORY=yes
2966	export AIXTHREAD_SCOPE=S
2967	export OMP_NUM_THREADS=$threads_per_task
2968	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
2969	export AUTHSTATE=files
2970	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
2971	# export MP_PRINTENV=yes
2972
2973	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
2974	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
2975	export MP_WAIT_MODE=poll
2976	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
2977	fi
2978
2979	if [[ "$LOADLBATCH" = yes ]]
2980	then
2981	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
2982	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
2983	then
2984	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
2985	else
2986	poe ./a.out $ROPTS
2987	fi
2988	else
2989	if [[ $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms ]]
2990	then
2991	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
2992	elif [[ $localhost = ibmy ]]
2993	then
2994	if [[ -f $hostfile ]]
2995	then
2996	cp $hostfile hostfile
2997	else
2998	(( ii = 1 ))
2999	while (( ii <= $numprocs ))
3000	do
3001	echo $localhost_realname >> hostfile
3002	(( ii = ii + 1 ))
3003	done
3004	fi
3005	export MP_HOSTFILE=hostfile
3006
3007	if [[ $run_coupled_model = false ]]
3008	then
3009	if [[ "$ocean_file_appendix" = true ]]
3010	then
3011	echo "precursor_ocean" > runfile_atmos
3012	else
3013	echo "precursor_atmos" > runfile_atmos
3014	fi
3015	else
3016	(( iia = $numprocs_atmos / $threads_per_task ))
3017	(( iio = $numprocs_ocean / $threads_per_task ))
3018	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3019	printf "\n using $coupled_mode coupling"
3020	printf "\n\n"
3021	echo "coupled_run $iia $iio" > runfile_atmos
3022	fi
3023
3024	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3025
3026	else
3027	if [[ "$host_file" = "" ]]
3028	then
3029	printf "\n +++ no hostfile given in configuration file"
3030	locat=config_file
3031	exit
3032	else
3033	eval host_file=$host_file
3034	fi
3035	export MP_HOSTFILE=$host_file
3036	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3037	fi
3038	fi
3039	elif [[ $host = nech \|\| $host = necriam ]]
3040	then
3041	(( ii = nodes ))
3042	if [[ $ii = 1 ]]
3043	then
3044	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3045	export MPIPROGINF=YES
3046	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3047	echo "*** execution on single node with mpirun"
3048	mpirun -np $numprocs ./a.out $ROPTS
3049	else
3050	(( i = 0 ))
3051	while (( i < ii ))
3052	do
3053	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3054	(( i = i + 1 ))
3055	done
3056
3057	echo "#!/bin/sh" > mpi_exec_shell
3058	echo " " >> mpi_exec_shell
3059	echo "set -u" >> mpi_exec_shell
3060	echo "F_ERRCNT=0" >> mpi_exec_shell
3061	echo "MPIPROGINV=YES" >> mpi_exec_shell
3062	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3063	echo "cpurest=$cpurest" >> mpi_exec_shell
3064	echo "fname=$fname" >> mpi_exec_shell
3065	echo "localhost=$localhost" >> mpi_exec_shell
3066	echo "return_addres=$return_addres" >> mpi_exec_shell
3067	echo "return_username=$return_username" >> mpi_exec_shell
3068	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3069	echo "write_binary=$write_binary" >> mpi_exec_shell
3070	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3071	echo " " >> mpi_exec_shell
3072	echo "export F_ERRCNT" >> mpi_exec_shell
3073	echo "export MPIPROGINV" >> mpi_exec_shell
3074	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3075	echo "export cpurest" >> mpi_exec_shell
3076	echo "export fname" >> mpi_exec_shell
3077	echo "export localhost" >> mpi_exec_shell
3078	echo "export return_addres" >> mpi_exec_shell
3079	echo "export return_username" >> mpi_exec_shell
3080	echo "export tasks_per_node" >> mpi_exec_shell
3081	echo "export write_binary" >> mpi_exec_shell
3082	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3083	echo " " >> mpi_exec_shell
3084	echo "exec ./a.out" >> mpi_exec_shell
3085
3086	chmod u+x mpi_exec_shell
3087	export MPIPROGINF=YES
3088	mpirun -f multinode_config &
3089	wait
3090
3091	fi
3092	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lctit ]]
3093	then
3094
3095	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3096	# DOES NOT EXIST
3097	if [[ $host != lcsgih && $host != lcsgib ]]
3098	then
3099	if [[ -f $hostfile ]]
3100	then
3101	cp $hostfile hostfile
3102	else
3103	(( ii = 1 ))
3104	while (( ii <= $numprocs / $threads_per_task ))
3105	do
3106	echo $localhost_realname >> hostfile
3107	(( ii = ii + 1 ))
3108	done
3109	fi
3110	eval zeile=\"`head -n $ii hostfile`\"
3111	printf "\n *** running on: $zeile"
3112	fi
3113
3114	(( ii = $numprocs / $threads_per_task ))
3115	export OMP_NUM_THREADS=$threads_per_task
3116	# echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3117	if [[ $threads_per_task != 1 ]]
3118	then
3119	printf "\n threads per task: $threads_per_task"
3120	fi
3121	if [[ $run_coupled_model = false ]]
3122	then
3123	if [[ "$ocean_file_appendix" = true ]]
3124	then
3125	echo "precursor_ocean" > runfile_atmos
3126	else
3127	echo "precursor_atmos" > runfile_atmos
3128	fi
3129	printf "\n\n"
3130	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3131	then
3132	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3133	then
3134	# export MPI_LAUNCH_TIMEOUT=360
3135	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3136	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3137	then
3138	# ulimit -s 300000 # A too large stack size causes problems
3139	# export MV2_NUM_PORTS=2
3140	# export MV2_CPU_MAPPING=0:1:2:3
3141	mpiexec -np $ii ./a.out $ROPTS < runfile_atmos
3142	fi
3143	elif [[ $host = lcxt4 ]]
3144	then
3145	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3146	else
3147	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3148	fi
3149	else
3150
3151	# currently there is no full MPI-2 support on ICE and XT4
3152	(( iia = $numprocs_atmos / $threads_per_task ))
3153	(( iio = $numprocs_ocean / $threads_per_task ))
3154	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3155	printf "\n using $coupled_mode coupling"
3156	printf "\n\n"
3157
3158	if [[ $coupled_mode = "mpi2" ]]
3159	then
3160	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3161	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3162	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3163	then
3164
3165	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3166	then
3167	# export MPI_LAUNCH_TIMEOUT=360
3168	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3169	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3170	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3171	then
3172	# ulimit -s 300000 # A too large stack size causes problems
3173	# export MV2_NUM_PORTS=2
3174	# export MV2_CPU_MAPPING=0:1:2:3
3175	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3176	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3177	fi
3178
3179	elif [[ $host = lcxt4 ]]
3180	then
3181
3182	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3183	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3184
3185	else
3186	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3187	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3188	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3189	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3190	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3191	fi
3192	wait
3193
3194	else
3195
3196	echo "coupled_run $iia $iio" > runfile_atmos
3197	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3198	then
3199
3200	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3201	then
3202	# export MPI_LAUNCH_TIMEOUT=360
3203	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3204	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3205	then
3206	# ulimit -s 300000 # A too large stack size causes problems
3207	# export MV2_NUM_PORTS=2
3208	# export MV2_CPU_MAPPING=0:1:2:3
3209	mpiexec ./a.out $ROPTS < runfile_atmos
3210	fi
3211
3212	elif [[ $host = lcxt4 ]]
3213	then
3214
3215	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3216
3217	fi
3218	wait
3219	fi
3220
3221	# if [[ $scirocco = true ]]
3222	# then
3223	# mpiexec -machinefile hostfile -n $ii a.out $ROPTS
3224	# else
3225	# mpirun -machinefile hostfile -np $ii a.out $ROPTS
3226	# fi
3227	fi
3228	elif [[ $host = decalpha ]]
3229	then
3230	dmpirun -np $numprocs a.out $ROPTS
3231	elif [[ $host = lctit ]]
3232	then
3233	export runfile=runfile.$kennung
3234
3235	echo "cd $PWD" > $runfile
3236	echo "export OMP_NUM_THREADS=$OMP_NUM_THREADS" >> $runfile
3237	echo "export cpurest=$cpurest" >> $runfile
3238	echo "export fname=$fname" >> $runfile
3239	echo "export localhost=$localhost" >> $runfile
3240	echo "export return_addres=$return_addres" >> $runfile
3241	echo "export return_username=$return_username" >> $runfile
3242	echo "export tasks_per_node=$tasks_per_node" >> $runfile
3243	echo "export write_binary=$write_binary" >> $runfile
3244	echo "export use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> $runfile
3245	echo "./a.out" >> $runfile
3246	chmod u+x $runfile
3247
3248	if [[ "$QUEUE" = interactive ]]
3249	then
3250	mpirun -np $numprocs a.out $ROPTS
3251	else
3252	(( mem_tsubame = $memory / 1024.0 ))
3253	echo "Memory for Tsubame for each process in GB:", $mem_tsubame
3254	# n1ge -fore -g 1S060156 -mpi $numprocs -mem 4 -N palm -q $queue a.out $ROPTS
3255	# /n1ge/TITECH_GRID/tools/bin/n1ge -fore -g $group_number -mpi ${numprocs}:$tasks_per_node -mem $mem_tsubame -N palm -rt $minuten -q $queue a.out $ROPTS
3256	n1ge -fore -g $group_number -mpi ${numprocs}:$tasks_per_node -mem $mem_tsubame -N palm -rt $minuten -q $queue a.out $ROPTS
3257	fi
3258
3259	rm $runfile
3260	else
3261	mpprun -n $numprocs a.out $ROPTS
3262	fi
3263	[[ $? != 0 ]] && execution_error=true
3264
3265
3266	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3267	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3268	then
3269	apprentice
3270	fi
3271	else
3272	a.out $ROPTS
3273	fi
3274	fi
3275	if [[ $? != 0 \|\| $execution_error = true ]]
3276	then
3277
3278	# ABBRUCH BEI LAUFZEITFEHLER
3279	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3280	printf "\n +++ runtime error occured"
3281	locat=execution
3282	exit
3283	else
3284	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3285	printf "\n$striche\n *** execution finished \n"
3286
3287	# Stop the dvr streaming server and process the dvr output in order
3288	# to create dvrs- and html-files containing all streams
3289	if [[ "$dvrserver_id" != "" ]]
3290	then
3291	kill $dvrserver_id
3292	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3293
3294	# If there is a directory, data have been output by the
3295	# streaming server. Otherwise, user has chosen dvrp_output=local
3296	if [[ -d DATA_DVR ]]
3297	then
3298
3299	# Add the current dvr configuration file to the dvr output
3300	# directory
3301	cp .dvrserver.config DATA_DVR
3302
3303	# Process the dvr output (option -s for also generating
3304	# sequence mode data)
3305	process_dvr_output -d DATA_DVR -f $fname -s
3306
3307	else
3308
3309	# Process the local output
3310	process_dvr_output -l -d DATA_DVR -f $fname
3311
3312	fi
3313
3314	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3315	then
3316
3317	# Process dvr output generated in local mode (dvrp_output=local)
3318	process_dvr_output -l -d DATA_DVR -f $fname
3319
3320	fi
3321	fi
3322
3323
3324
3325	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3326	(( i = 0 ))
3327	while (( i < ioc ))
3328	do
3329	(( i = i + 1 ))
3330	if (( i == 1 ))
3331	then
3332	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
3333	fi
3334	printf "\n >>> ${out_command[$i]}"
3335	eval ${out_command[$i]}
3336	if (( i == ioc ))
3337	then
3338	printf "\n$striche\n"
3339	fi
3340	done
3341
3342
3343	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
3344	if [[ $do_trace = true ]]
3345	then
3346	printf "\n\n"
3347	ls -al
3348	fi
3349
3350
3351
3352	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
3353	(( i = 0 ))
3354	while (( i < iout ))
3355	do
3356	(( i = i + 1 ))
3357	if (( i == 1 ))
3358	then
3359	printf "\n\n *** saving OUTPUT-files:\n$striche"
3360	fi
3361
3362	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3363	files_for_pes=false; filetyp=file
3364	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
3365	then
3366	files_for_pes=true; filetyp=directory
3367	actionout[$i]=""
3368	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
3369	then
3370	actionout[$i]=""
3371	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
3372	then
3373	files_for_pes=true; filetyp=directory
3374	actionout[$i]="ar"
3375	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
3376	then
3377	actionout[$i]="ar"
3378	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
3379	then
3380	files_for_pes=true; filetyp=directory
3381	actionout[$i]="fl"
3382	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
3383	then
3384	actionout[$i]="fl"
3385	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
3386	then
3387	files_for_pes=true; filetyp=directory
3388	actionout[$i]="tr"
3389	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
3390	then
3391	actionout[$i]="tr"
3392	fi
3393
3394	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
3395	then
3396	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
3397	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
3398	then
3399	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
3400	else
3401
3402
3403	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3404	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3405	# REMOTE-RECHNUNGEN
3406	if [[ "${actionout[$i]}" = tr ]]
3407	then
3408	if [[ $localhost != $fromhost ]]
3409	then
3410	if [[ $files_for_pes = false ]]
3411	then
3412	cps=""
3413	cst=""
3414	else
3415	cps=-c
3416	cst="/"
3417	fi
3418	if [[ $localhost = ibmb \|\| $localhost = nech ]]
3419	then
3420
3421	# TRANSFER IN EIGENSTAENDIGEM JOB
3422	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3423	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3424	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3425	if [[ $files_for_pes = false ]]
3426	then
3427	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3428	else
3429	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
3430	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
3431	fi
3432
3433	echo "set -x" > transfer_${localout[$i]}
3434	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3435
3436	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
3437	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
3438	printf "\n or higher cycle\n"
3439	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3440
3441	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3442
3443	if [[ $localhost = nech ]]
3444	then
3445	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3446	else
3447	if [[ "$LOGNAME" = b323013 ]]
3448	then
3449	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3450	else
3451	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3452	fi
3453	fi
3454
3455	else
3456
3457	# TRANSFER INNERHALB DIESES JOBS
3458	transfer_failed=false
3459	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
3460	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
3461	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3462	[[ $? != 0 ]] && transfer_failed=true
3463
3464	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3465	# LOKALER MASCHINE ANLEGEN
3466	if [[ $transfer_failed = true ]]
3467	then
3468	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3469	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3470
3471	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3472	# ANLEGEN.
3473	eval local_catalog=${pathout[$i]}
3474	if [[ ! -d $local_catalog ]]
3475	then
3476	printf " *** local directory does not exist. Trying to create:\n"
3477	printf " $local_catalog \n"
3478	mkdir -p $local_catalog
3479	fi
3480	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3481	transfer_problems=true
3482	fi
3483	fi
3484	else
3485
3486	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
3487	actionout[$i]=""
3488	fi
3489	fi
3490
3491
3492	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3493	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3494	# REMOTE-RECHNUNGEN
3495	if [[ "${actionout[$i]}" = tra ]]
3496	then
3497	if [[ $localhost != $fromhost ]]
3498	then
3499	if [[ $localhost = ibmh \|\| $localhost = ibmb \|\| $localhost = nech ]]
3500	then
3501
3502	# TRANSFER IN EIGENSTAENDIGEM JOB
3503	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3504	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3505	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3506	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3507
3508	echo "set -x" > transfer_${localout[$i]}
3509	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3510
3511	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
3512	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
3513	printf "\n or higher cycle\n"
3514	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3515
3516	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3517
3518	if [[ $localhost = nech ]]
3519	then
3520	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3521	else
3522	if [[ $LOGNAME = b323013 ]]
3523	then
3524	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3525	else
3526	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3527	fi
3528	fi
3529
3530	else
3531
3532	# TRANSFER INNERHALB DIESES JOBS
3533	transfer_failed=false
3534	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
3535	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
3536	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3537	[[ $? != 0 ]] && transfer_failed=true
3538
3539	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3540	# LOKALER MASCHINE ANLEGEN
3541	if [[ $transfer_failed = true ]]
3542	then
3543	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3544	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3545
3546	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3547	# ANLEGEN
3548	eval local_catalog=${pathout[$i]}
3549	if [[ ! -d $local_catalog ]]
3550	then
3551	printf " *** local directory does not exist. Trying to create:\n"
3552	printf " $local_catalog \n"
3553	mkdir -p $local_catalog
3554	fi
3555
3556	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3557	transfer_problems=true
3558	fi
3559	fi
3560	else
3561
3562	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
3563	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
3564	actionout[$i]=a
3565	fi
3566	fi
3567
3568
3569	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
3570	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
3571	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
3572	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
3573	if [[ "${actionout[$i]}" = fl ]]
3574	then
3575	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3576	chmod g+rx $tmp_data_catalog
3577	if [[ $files_for_pes = false ]]
3578	then
3579	printf "\n >>> OUTPUT: ${localout[$i]} to"
3580	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3581	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
3582	else
3583	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
3584	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3585	mkdir $tmp_data_catalog/${frelout[$i]}
3586	cd ${localout[$i]}
3587	for file in $(ls *)
3588	do
3589	ln -f $file $tmp_data_catalog/${frelout[$i]}
3590	done
3591	cd $TEMPDIR
3592	fi
3593
3594
3595	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
3596	if [[ $store_on_archive_system = true ]]
3597	then
3598
3599	if [[ $archive_system = asterix ]]
3600	then
3601	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3602	if [[ $files_for_pes = false ]]
3603	then
3604	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3605	else
3606	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3607	fi
3608	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3609	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
3610	echo "then" >> archive_${frelout[$i]}
3611	echo " do_stageout=false" >> archive_${frelout[$i]}
3612	echo "else" >> archive_${frelout[$i]}
3613	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
3614	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
3615	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
3616	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
3617	if [[ $files_for_pes = false ]]
3618	then
3619	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
3620	else
3621	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
3622	fi
3623	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
3624	echo "fi" >> archive_${frelout[$i]}
3625	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3626	elif [[ $archive_system = DMF ]]
3627	then
3628	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3629	if [[ $files_for_pes = false ]]
3630	then
3631	printf "\n +++ archiving of single files impossible with $archive_system !\n"
3632	locat=DMF
3633	exit
3634	else
3635	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
3636	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
3637	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
3638	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
3639	fi
3640	elif [[ $archive_system = tivoli ]]
3641	then
3642	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3643	if [[ $files_for_pes = false ]]
3644	then
3645	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3646	echo "set -x" >> archive_${frelout[$i]}
3647	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3648	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3649	else
3650
3651	echo "set -x" >> archive_${frelout[$i]}
3652	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
3653	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3654	cd $tmp_data_catalog
3655	all_files=`ls -1 ${frelout[$i]}/*`
3656	cd - > /dev/null
3657	(( inode = 0 ))
3658	(( tp1 = tasks_per_node + 1 ))
3659	while (( inode < nodes ))
3660	do
3661	# echo "*** all_files = \"$all_files\" "
3662	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3663	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3664	# echo "*** tasks_per_node = \"$tasks_per_node\" "
3665	# echo "*** files = \"$files\" "
3666	# echo "*** all_files = \"$all_files\" "
3667	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3668	echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3669	echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3670	(( inode = inode + 1 ))
3671	done
3672	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3673	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3674	fi
3675	elif [[ $archive_system = ut ]]
3676	then
3677	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3678	if [[ $files_for_pes = false ]]
3679	then
3680	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3681	echo "set -x" >> archive_${frelout[$i]}
3682	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3683	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3684	else
3685
3686	echo "set -x" >> archive_${frelout[$i]}
3687	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
3688	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
3689	cd $tmp_data_catalog
3690	all_files=`ls -1 ${frelout[$i]}/*`
3691	cd - > /dev/null
3692	(( inode = 0 ))
3693	(( tp1 = tasks_per_node + 1 ))
3694	while (( inode < nodes ))
3695	do
3696	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3697	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3698	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3699	(( inode = inode + 1 ))
3700	done
3701	fi
3702	elif [[ $archive_system = none ]]
3703	then
3704	printf " +++ archiving on $localhost not available!\n"
3705	fi
3706
3707	if [[ $archive_system != none ]]
3708	then
3709	if [[ $localhost = ibmh \|\| $localhost = ibmb ]]
3710	then
3711	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
3712	subjob -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
3713	elif [[ $localhost = nech ]]
3714	then
3715	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
3716	fi
3717	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3718	fi
3719	else
3720	printf " +++ caution: option -A is switched on. No archiving on $archive_system!\n"
3721	fi
3722
3723
3724	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
3725	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
3726	if [[ $files_for_pes = false ]]
3727	then
3728	cat /dev/null > ${pathout[$i]}
3729	else
3730	mkdir -p ${pathout[$i]}
3731	fi
3732
3733	fi
3734
3735
3736	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
3737	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
3738	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
3739	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
3740	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
3741	# GEMAESSEN ARCHIVIERUNGEN GESETZT
3742	if [[ "${actionout[$i]}" = ar ]]
3743	then
3744	if [[ $files_for_pes = false ]]
3745	then
3746	printf "\n >>> OUTPUT: ${localout[$i]} to"
3747	printf "\n ${pathout[$i]}"
3748	printf "\n File will be copied to archive-system ($archive_system) !\n"
3749	else
3750	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
3751	printf "\n ${pathout[$i]}"
3752	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
3753	fi
3754	mv ${localout[$i]} ${frelout[$i]}
3755
3756	file_saved=false
3757
3758	if [[ $archive_system = asterix ]]
3759	then
3760	do_stageout=true
3761	(( stageout_anz = 0 ))
3762	while [[ $do_stageout = true ]]
3763	do
3764	if [[ $files_for_pes = false ]]
3765	then
3766	stageout ${frelout[$i]} > STAGE_OUTPUT
3767	else
3768	stageout -t ${frelout[$i]} > STAGE_OUTPUT
3769	fi
3770	cat STAGE_OUTPUT
3771	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
3772	then
3773	file_saved=true
3774	do_stageout=false
3775	else
3776	if [[ $files_for_pes = false ]]
3777	then
3778	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
3779	else
3780	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
3781	fi
3782	(( stageout_anz = stageout_anz + 1 ))
3783	if (( stageout_anz == 10 ))
3784	then
3785	printf "\n +++ stoped after 10 unsuccessful tries!"
3786	archive_save=false
3787	do_stageout=false
3788	else
3789	printf "\n *** new try to store on archive after 15 min:"
3790	sleep 900
3791	fi
3792	fi
3793	done
3794	elif [[ $archive_system = DMF ]]
3795	then
3796	if [[ $files_for_pes = false ]]
3797	then
3798	printf "\n +++ archiving of single files impossible on $archive_system!\n"
3799	locat=DMF
3800	exit
3801	else
3802	rm -rf $ARCHIVE/${frelout[$i]}
3803	cp -r ${frelout[$i]} $ARCHIVE
3804	fi
3805	file_saved=true
3806	elif [[ $archive_system = tivoli ]]
3807	then
3808	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
3809	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
3810	# GELEGT WERDEN
3811	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3812	chmod g+rx $tmp_data_catalog
3813	if [[ $files_for_pes = false ]]
3814	then
3815	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
3816	else
3817	mkdir $tmp_data_catalog/${frelout[$i]}
3818	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
3819	fi
3820
3821	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
3822	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
3823	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
3824	if [[ $files_for_pes = false ]]
3825	then
3826	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3827	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3828	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3829	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3830	else
3831	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3832	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3833	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3834	fi
3835
3836	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
3837	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3838	file_saved=true
3839
3840	elif [[ $archive_system = ut ]]
3841	then
3842	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
3843	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
3844	# GELEGT WERDEN
3845	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3846	chmod g+rx $tmp_data_catalog
3847	if [[ $files_for_pes = false ]]
3848	then
3849	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
3850	else
3851	mkdir $tmp_data_catalog/${frelout[$i]}
3852	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
3853	fi
3854
3855	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
3856	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
3857	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
3858	if [[ $files_for_pes = false ]]
3859	then
3860	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3861	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3862	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3863	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3864	else
3865	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3866	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3867	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3868	fi
3869
3870	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
3871	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3872	file_saved=true
3873
3874	else
3875	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
3876	archive_save=false
3877	fi
3878	if [[ $file_saved = true ]]
3879	then
3880	if [[ $files_for_pes = false ]]
3881	then
3882	cat /dev/null > ${pathout[$i]}
3883	else
3884	mkdir -p ${pathout[$i]}
3885	fi
3886	fi
3887	fi
3888
3889	# APPEND AUF LOKALER MASCHINE
3890	if [[ "${actionout[$i]}" = "a" ]]
3891	then
3892	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
3893	cat ${localout[$i]} >> ${pathout[$i]}
3894	fi
3895
3896	# KOPIEREN AUF LOKALER MASCHINE
3897	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
3898	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
3899	then
3900
3901	# KOPIEREN AUF EINPROZESSORMASCHINE
3902	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
3903	then
3904	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
3905	if [[ $link_local_output = true ]]
3906	then
3907	printf " using ln -f\n"
3908	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
3909	fi
3910	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
3911	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
3912	then
3913	if [[ $link_local_output = true ]]
3914	then
3915	printf " ln failed, using cp...\n"
3916	fi
3917	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
3918	fi
3919	else
3920	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
3921	if [[ $link_local_output = true ]]
3922	then
3923	printf " using ln -f\n"
3924	ln -f ${localout[$i]} ${pathout[$i]}
3925	fi
3926	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
3927	if [[ ! -f "${pathout[$i]}" ]]
3928	then
3929	if [[ $link_local_output = true ]]
3930	then
3931	printf " ln failed, using cp...\n"
3932	fi
3933	cp ${localout[$i]} ${pathout[$i]}
3934	fi
3935	fi
3936
3937	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
3938	then
3939
3940	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
3941	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
3942	# WIRD DANN KOPIERT
3943	# PER MOVE UMBENANNT WERDEN
3944	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
3945	if [[ $link_local_output = true ]]
3946	then
3947	printf " using ln -f\n"
3948	mkdir ${pathout[$i]}
3949	cd ${localout[$i]}
3950	for file in $(ls *)
3951	do
3952	ln -f $file ${pathout[$i]}
3953	done
3954	cd $TEMPDIR
3955	fi
3956	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
3957	if [[ ! -f "${pathout[$i]}/_0000" ]]
3958	then
3959	if [[ $link_local_output = true ]]
3960	then
3961	printf " ln failed for .../_0000, using cp...\n"
3962	fi
3963	cp -r ${localout[$i]} ${pathout[$i]}
3964	fi
3965
3966	fi
3967	fi
3968	done
3969	if (( i != 0 ))
3970	then
3971	if [[ $transfer_problems = true ]]
3972	then
3973	printf "\n$striche\n *** OUTPUT-files saved"
3974	printf "\n +++ WARNING: some data transfers failed! \n"
3975	else
3976	printf "\n$striche\n *** all OUTPUT-files saved \n"
3977	fi
3978	fi
3979
3980
3981	# EVENTUELL FOLGEJOB STARTEN
3982	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
3983	if [[ -f CONTINUE_RUN ]]
3984	then
3985
3986	if [[ $archive_save = true ]]
3987	then
3988
3989	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
3990	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
3991	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
3992	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
3993	# HANDEN
3994	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
3995	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
3996	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
3997	if [[ $(echo $mc \| grep -c "#") != 0 ]]
3998	then
3999	mc=`echo $mc \| sed 's/#/f/g'`
4000	fi
4001
4002
4003	# JOB STARTEN
4004	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4005	echo " $mc"
4006	printf "\n$striche\n"
4007	if [[ $localhost != $fromhost ]]
4008	then
4009
4010	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms \|\| $localhost = lctit ]]
4011	then
4012	echo "*** ssh will be used to initiate restart-runs!"
4013	echo " return_addres=\"$return_addres\" "
4014	echo " return_username=\"$return_username\" "
4015	if [[ $return_addres = 172.20.25.41 ]]
4016	then
4017	# WORKAROUND AUF SCIROCCO AM TIT
4018	print "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc " \| ssh $return_addres -l $return_username
4019	else
4020	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4021	fi
4022	else
4023	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4024	locat=restart; exit
4025	fi
4026
4027	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4028	# DER AKTUELLE JOB ENDET
4029	sleep 30
4030
4031	else
4032
4033	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4034	# RUFEN WERDEN, AUSSER AUF lcfimm
4035	cd $LOCAL_PWD
4036	if [[ $localhost = lcfimm ]]
4037	then
4038	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4039	else
4040	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4041	fi
4042	cd - > /dev/null
4043	fi
4044	printf "\n$striche\n *** restart-run initiated \n"
4045
4046
4047	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4048	# GEHOLT WORDEN SIND, LOESCHEN
4049	(( i = 0 ))
4050	while (( i < iin ))
4051	do
4052	(( i = i + 1 ))
4053	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4054	then
4055	rm -r $tmp_data_catalog/${frelin[$i]}
4056	fi
4057	done
4058
4059	else
4060
4061	printf "\n +++ no restart-run possible, since errors occured"
4062	printf "\n during the archive process"
4063	fi
4064
4065	fi
4066
4067
4068
4069	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4070	if [[ "$email_notification" != "" ]]
4071	then
4072
4073	if [[ $localhost != $fromhost ]]
4074	then
4075	if [[ -f CONTINUE_RUN ]]
4076	then
4077	echo "PALM restart run necessary" > email_text
4078	echo "description header of actual run:" >> email_text
4079	cat CONTINUE_RUN >> email_text
4080	echo "mrun-command to restart:" >> email_text
4081	echo "$mc" >> email_text
4082	else
4083	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4084	fi
4085	mail $email_notification < email_text
4086	printf "\n *** email notification sent to \"$email_notification\" "
4087	fi
4088	fi
4089
4090
4091
4092	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4093	cd $HOME
4094	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4095
4096	else
4097
4098
4099	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4100	# CHENDE AKTIONEN DURCHGEFUEHRT
4101
4102	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4103	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
4104	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4105	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4106	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4107	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4108	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4109	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4110	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4111	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4112	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4113	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4114	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4115	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4116	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4117	if [[ $use_openmp = true ]]
4118	then
4119	mrun_com=${mrun_com}" -O"
4120	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $threads_per_task"
4121	else
4122	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4123	fi
4124	[[ $store_on_archive_system = false ]] && mrun_com=${mrun_com}" -A"
4125	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4126	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4127	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4128	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4129	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4130	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4131	if [[ $do_remote = true ]]
4132	then
4133	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4134	fi
4135
4136
4137	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4138	jobfile=jobfile.$RANDOM
4139
4140
4141	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4142	echo "mkdir $TEMPDIR" >> $jobfile
4143	echo "cd $TEMPDIR" >> $jobfile
4144
4145
4146	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4147	if [[ $do_trace = true ]]
4148	then
4149	echo "set -x" >> $jobfile
4150	else
4151	echo "set +vx" >> $jobfile
4152	fi
4153
4154
4155	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4156	# DATEI FUER DEN JOB
4157	if [[ $( echo $host \| cut -c1-5 ) = lcsgi ]]
4158	then
4159
4160	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4161	# KOPIEREN
4162	if [[ $restart_run != true ]]
4163	then
4164	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4165	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4166	fi
4167
4168	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4169	echo "set -x" >> $jobfile
4170	echo "scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4171	echo "export SOURCES_COMPLETE=true" >> $jobfile
4172
4173	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4174	# ARBEITSVERZEICHNIS VERSCHIEBEN
4175	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4176	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4177	echo "execute_mrun=true" >> $jobfile
4178	echo " " >> $jobfile
4179
4180	else
4181
4182	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4183	# SOWIE GEGEBENENFALLS DES MAKEFILES
4184	if [[ $do_compile = true ]]
4185	then
4186
4187	source_catalog=SOURCES_FOR_RUN_$fname
4188
4189	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4190	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4191	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4192	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4193	echo "export SOURCES_COMPLETE=true" >> $jobfile
4194	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4195
4196	for filename in $source_list
4197	do
4198	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4199	echo "cat > $filename << \"%END%\"" >> $jobfile
4200	cat $source_catalog/$filename >> $jobfile
4201	echo " " >> $jobfile
4202	echo "%END%" >> $jobfile
4203	echo " " >> $jobfile
4204	done
4205
4206	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4207	echo "cat > Makefile << \"%END%\"" >> $jobfile
4208	cat $source_catalog/Makefile >> $jobfile
4209	echo " " >> $jobfile
4210	echo "%END%" >> $jobfile
4211	echo " " >> $jobfile
4212
4213	echo "cd - > /dev/null" >> $jobfile
4214
4215	fi
4216
4217
4218	# ABSPEICHERN DER KONFIGURATIONSDATEI
4219	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4220	echo "cat > $config_file << \"%END%\"" >> $jobfile
4221	cat $config_file >> $jobfile
4222	echo "%END%" >> $jobfile
4223	echo " " >> $jobfile
4224
4225
4226	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
4227	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4228	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
4229	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
4230	echo "%END%" >> $jobfile
4231	if [[ $host = lctit ]]
4232	then
4233	echo "sed 's/bin\/ksh/home2\/usr5\/mkanda\/pub\/ksh/' < $mrun_script_name > mrun_new" >> $jobfile
4234	echo "mv mrun_new $mrun_script_name" >> $jobfile
4235	fi
4236	echo "chmod u+x $mrun_script_name" >> $jobfile
4237	echo "execute_mrun=true" >> $jobfile
4238	echo " " >> $jobfile
4239
4240	fi
4241
4242
4243	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
4244	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
4245	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
4246	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
4247	if [[ $do_remote = true ]]
4248	then
4249	(( i = 0 ))
4250	while (( i < iin ))
4251	do
4252	(( i = i + 1 ))
4253	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
4254	if [[ "${transin[$i]}" = job ]]
4255	then
4256	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
4257	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
4258	echo " " >> $jobfile
4259	echo "%END%" >> $jobfile
4260	else
4261	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
4262	fi
4263
4264	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
4265	echo "if [[ \$? = 1 ]]" >> $jobfile
4266	echo "then" >> $jobfile
4267	echo " echo \" \" " >> $jobfile
4268	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
4269	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
4270	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
4271	echo " execute_mrun=false" >> $jobfile
4272	echo "fi" >> $jobfile
4273	done
4274	fi
4275
4276	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
4277	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
4278	echo "LOCAL_PWD=$working_directory" >> $jobfile
4279	echo "export LOCAL_PWD" >> $jobfile
4280
4281	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
4282	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
4283	echo "export LOCAL_MRUN_PATH" >> $jobfile
4284
4285	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
4286	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
4287	then
4288	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
4289	fi
4290
4291	# MRUN AUF ZIELRECHNER AUFRUFEN
4292	echo "set -x" >> $jobfile
4293	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
4294
4295	echo 'ls -al; echo `pwd`' >> $jobfile
4296	echo "cd \$HOME" >> $jobfile
4297	echo "rm -rf $TEMPDIR" >> $jobfile
4298
4299
4300
4301
4302	# JOB PER SUBJOB STARTEN
4303	if [[ $silent = false ]]
4304	then
4305	printf "\n "
4306	else
4307	printf "\n\n"
4308	fi
4309
4310	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog $jobfile
4311	rm -rf $jobfile
4312
4313
4314	fi # ENDE REMOTE-TEIL
4315
4316
4317
4318	# ENDE DER PROZEDUR

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