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source: palm/trunk/SCRIPTS/mrun @ 286

Last change on this file since 286 was 265, checked in by letzel, 16 years ago
mrun update for lctit
Property svn:keywords set to `Id Rev`
File size: 161.7 KB

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1	#!/bin/ksh
2	# mrun - Plot-Shellskript
3	# $Id: mrun 265 2009-03-23 12:16:31Z weinreis $
4
5	# Prozedur zum Starten von Modellaeufen
6
7	# letzte Aenderung:
8	# 03/03/94 - Siggi - Entwicklungsbeginn
9	# 21/03/94 - Siggi - Entwicklungsabschluss (Version 1.0)
10	# 09/12/94 - Siggi - allexport unterbunden; statt dessen werden jetzt ein-
11	# zelne Variable exportiert. Dies ist noetig, weil an-
12	# sonsten irgendein Speicher ueberlaeuft und von mrun
13	# aufgerufene Programme (z.B. stageout) mit Fehlern
14	# abbrechen (too many arguments)
15	# 20/06/95 - Siggi - noclobber muss explizit abgeschaltet, da jetzt
16	# defaultmaessig im RRZN-Profile eingeschaltet
17	# 10/06/97 - Siggi - Zusaetzliche Option -C bei cpp, damit // nicht
18	# wegfallen
19	# 25/04/00 - Siggi - Version 1.5
20	# remote_addres und remote_user in return_addres bzw.
21	# return_username umbenannt, return_username wird dem
22	# mrun-Aufruf im Job ueber Option -U mitgegeben.
23	# Neue Variable remote_username, die beim interaktiven
24	# mrun-Aufruf zwingend ueber die neue Option -u oder
25	# in der Konfigurationsdatei angegeben werden muss.
26	# 08/02/01 - Siggi - Alle mrun-Meldungen ins englische uebersetzt,
27	# Version 1.7
28	# 05/05/02 - Siggi - Uebersetzungen mittels make-Mechanismus moeglich
29	# 21/11/02 - Siggi - ENV-Variable XLFRTEOPTS wird vor Ausfuehrung auf
30	# IBM gesetzt, um Record-Laenge der NAMELIST-Dateien,
31	# zu bestimmen; Praeprozessoroptionen haben nun alle
32	# die Form -Dtext=text, weil auf IBM sonst text durch
33	# die leere Zeichenkette ersetzt wird
34	# 01/08/03 - Siggi - Test of implementing dvrp+1PE on ibm
35	# 07/01/04 - Siggi - additional preprocessor directive for ibm included
36	# (-D$OMP=OMP) in order to avoid problems with
37	# OMP_NUM_THREADS
38	# 04/01/05 - Siggi - archiving on hanni and berni is done in separate
39	# tar files, one for each node used
40	# 07/01/04 - Siggi - old code for t3e, vpp and hpcs eliminated
41	# 09/01/05 - Siggi - workaround for getting the IP address on gfdl3
42	# 17/01/05 - Siggi - job for data transfer to local machine now within
43	# job class c1 (HLRN)
44	# 27/01/05 - Siggi - IP address workaround for gfdl3 removed
45	# 28/01/05 - Siggi - tar-filenames on $PERM (HLRN) now include the
46	# base filename and cycle number
47	# 16/02/05 - Gerald - hababai validated
48	# 14/03/05 - Siggi - abort on NEC after first runtime error (F_ERRCNT)
49	# 29/03/05 - Marcus - berni*-en0 validated
50	# 21/04/05 - Siggi - transfer-job-protocol for avs-data is no more stored
51	# 24/04/05 - Siggi - netcdf support on lcmuk
52	# 25/04/05 - Siggi - netcdf support on gfld3 (decalpha)
53	# 11/05/05 - Siggi - files with non-numeric extensions (.xxx after cycle
54	# number) can now be used within interactive runs
55	# 12/05/05 - Siggi - netcdf support on ibm
56	# 13/05/05 - Siggi - error in tar-filenames on $PERM (HLRN) removed
57	# 18/05/05 - Siggi - netcdf support on nec
58	# 24/05/05 - Siggi - netcdf support on ibms
59	# 14/06/05 - Siggi - sleep interval after submit of restart job increased
60	# to 30 seconds
61	# 28/06/05 - Siggi - bora adjusted to new intel compiler (LD_LIBRARY_
62	# PATH is temporarily set)
63	# 07/09/05 - Siggi - setting of MP_EAGER_LIMIT switched off because it
64	# caused warnings in the job protocol
65	# 20/10/05 - Siggi - update of netcdf-version on decalpha (gfdl3)
66	# 25/10/05 - Siggi - error in listing files for getting the cycle number
67	# removed
68	# 26/10/05 - Siggi - new paths for dvrp-library, transfer of catalogs
69	# realized by file attribute trpe
70	# 28/10/05 - Siggi - if existing, the file extension is output in case
71	# of missing input file - no job abort in case of
72	# missing input files with file extensions
73	# (preliminary solution)
74	# 31/10/05 - Siggi - data transfer from nech now within seperate job
75	# 04/11/05 - Siggi - netcdf 3.6.0-p1 on ibmh/ibmb
76	# 07/12/05 - Siggi - gallego and elephanta admitted
77	# 30/12/05 - Siggi - gfdl5 (ibmy) admitted
78	# 10/01/06 - Siggi - cpp directive for NetCDF 64bit support
79	# 20/01/06 - Siggi - cpp directive for ibmy
80	# 09/02/06 - Siggi - ibmy admitted for batch mode
81	# 13/04/06 - Siggi - ostria admitted
82	# 18/04/06 - Siggi - usage of OpenMP implemented (additional option -O)
83	# 10/05/06 - Siggi - environment variable XLSMPOPTS set on IBM for
84	# optimization of OpenMP runs (option stacksize is
85	# necessary for large gridpoint numbers because
86	# otherwise a segmentation fault occurs)
87	# 23/05/05 - Siggi - lctit (SUN Fire X4600) admitted
88	# 21/08/06 - Siggi - standard mrun path on scirocco is as on bora
89	# 23/08/06 - Siggi - netcdf support for scirocco (notebook)
90	# 20/09/06 - Marcus - add DVRP library on nech
91	# 24/10/06 - Siggi - Environment variables for PALM steering are written
92	# on local NAMELIST file ENVPAR
93	# 24/11/06 - Siggi - levanto admitted, maestro switched to ifc 9.1
94	# 28/11/06 - Siggi - call to interpret_config.x_levanto because of SuSe 10
95	# 06/02/07 - Siggi - add DVRP library on lcmuk
96	# 07/02/07 - Siggi - revision of source code handling, source code is
97	# now expected in directory given by source_path and
98	# not in the current working directory, source code
99	# files provided in add_source_path are allways
100	# compiled, source code to be compiled is allways
101	# sampled in SOURCES_FOR_RUN_$fname which is a
102	# subdirectory of the current working directory,
103	# -s TEST changed to -s WRITE_PERMIT or -s WP,
104	# adapted for RIAM (neck)
105	# bugfix for cycle number of output file (extout)
106	# all hpmuk-related code removed
107	# 14/02/07 - Siggi - dvrp support for neck added
108	# 28/02/07 - Siggi - empty lines in configuration file are accepted
109	# mrun_path replaced by PALM_BIN,
110	# all machines are calling interpret_config.x
111	# 14/03/07 - Siggi - fimm admitted, revision number added to terminal
112	# output
113	# 16/03/07 - Siggi - adjustments for lctit
114	# 29/03/07 - Siggi - global revision transfered to batch job by new
115	# option -G
116	# 30/03/07 - Siggi - compilation "by hand" removed, cpp-directives/options
117	# + netcdf/dvrp-options are read from configuration
118	# file, host identifier (local_host) is read from
119	# config file, code related to ftp filetransfer
120	# removed (incl. option -f)
121	# 19/06/07 - Siggi - time limit for cdata jobs increased
122	# 25/07/07 - Siggi - two sets of executables can be started on lcmuk,
123	# if new option -Y (coupling) is given,
124	# output of executables to aout_output removed,
125	# messages are immediately written to stdout instead
126	# 03/08/07 - Marcus - add XOPT="-X $numprocs" for lcfimm
127	# 09/08/07 - Marcus - workaround on lcfimm to propagate environment
128	# variables out to the nodes in coupled mode -disabled-
129	# 13/08/07 - Marcus - start local restart jobs per ssh on lcfimm
130	# 28/08/07 - Marcus - completely remove workaround on lcfimm to propagate
131	# environment variables out to the nodes in coupled mode
132	# 15/10/07 - Siggi - Preliminary adjustments for lctit, based on Jin's
133	# suggestions
134	# 19/10/07 - Marcus - further adjustments for lctit: add new optional
135	# argument -g group_number, admit all sla* node_usage
136	# queues
137	# 30/10/07 - Marcus - further adjustments for queues on lctit
138	# 14/02/08 - Bjoern - link of restart files with long file name possible
139	# 28/02/08 - Marcus - If environment variable link_local_output is set to
140	# true, mrun tries "ln -f" on local output and resorts
141	# to "cp" or "cp -r" on error
142	# 15/04/08 - Siggi - argument -c introduced to most of the subjob calls,
143	# which allows the user to choose his own job catalog
144	# by setting job_catalog in the configuration file
145	# (default is ~/job_queue),
146	# workaround for mpiexec with -env option,
147	# adjustments for lcxt4 (Bergen Center for Computational
148	# Science)
149	# 22/05/08 - Marcus - If environment variable link_local_input is set to
150	# true, mrun tries "ln -f" on local input and resorts
151	# to "cp" or "cp -r" on error
152	# 27/05/08 - Siggi - PATH is set to PALM_BIN everywhere (missing so far)
153	# 14/07/08 - Siggi - adjustments for lcsgih
154	# 08/08/08 - Marcus - typo removed in lcxt4 branch
155	# 17/09/08 - Siggi - restart mechanism adjusted for lcsgi
156	# 02/10/08 - BjornM - argument "-Y" modified, adjustments for coupled runs
157	# 21/10/08 - Siggi - bugfix for the case that -K has more than one
158	# argument
159	# 08/11/08 - Siggi - bugfix for depository path settings in configuration
160	# file
161	# 11/11/08 - Siggi - rules for using user code files changed: user
162	# code splitted into one file per subroutine,
163	# user can provide his/her own makefile, only
164	# default source-code filenames are allowed
165	# 14/11/08 - Siggi - cond1 and cond2 are part of the depository name
166	# 08/01/09 - Siggi - mpi module on sgi machines to be used can be set
167	# with environment variable mpilib
168	# 13/01/09 - Siggi - totalview on hice/bice can be used in debug mode
169	# using environment variable totalview
170	# 25/02/09 - Siggi - cputime-option (-t) is allowed to be omitted for
171	# interactive runs
172	# 05/03/09 - Siggi - adjustments for new NEC-SX9 at RIAM (necriam)
173	# 16/03/09 - Siggi - dvrp_lib, dvrp_inc replaced by dvr_lib, dvr_inc,
174	# dvr streaming server is automatically started using
175	# new variable dvr_server and a configuration file
176	# .dvrserver.config,
177	# processing of dvr output files using new script
178	# process_dvr_output implemented, in order to make
179	# dvr application more user friendly
180	# 20/03/09 - Marcus - update of n1ge command for lctit
181
182
183	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
184
185	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
186	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
187	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
188
189	AddFilenames=""
190	additional_conditions=""
191	add_source_path=""
192	afname=""
193	archive_save=true
194	archive_system=none
195	compiler_name=""
196	cond1=""
197	cond2=""
198	config_file=.mrun.config
199	coupled_dist=""
200	coupled_mode="mpi1"
201	cpp_opts=""
202	cpp_options=""
203	cpumax=0
204	cpurest=0
205	delete_temporary_catalog=true
206	do_batch=false
207	do_compile=true
208	do_remote=false
209	do_stagein=true
210	do_stageout=true
211	do_trace=false
212	email_notification=""
213	exclude=""
214	executable=""
215	execution_error=false
216	fimm=false
217	fname=test
218	fromhost=""
219	global_revision=""
220	group_number=none
221	host=""
222	host_file=""
223	hp=""
224	ignore_archive_error=false
225	input_list=""
226	interpreted_config_file=""
227	job_catalog="~/job_queue"
228	job_on_file=""
229	keep_data_from_previous_run=false
230	link_local_input=false
231	link_local_output=false
232	localhost_realname=$(hostname)
233	local_compile=false
234	local_dvrserver_running=.FALSE.
235	locat=normal
236	mainprog=""
237	makefile=""
238	mc=$0
239	while [[ $(echo $mc \| grep -c "/") != 0 ]]
240	do
241	mc=`echo $mc \| cut -f2- -d"/"`
242	done
243	module_files=""
244	mrun_script_name=$mc
245	netcdf_inc=""
246	netcdf_lib=""
247	netcdf_support=false
248	node_usage=default
249	numprocs=""
250	numprocs_atmos=0
251	numprocs_ocean=0
252	OOPT=""
253	openmp=false
254	output_list=""
255	package_list=""
256	punkte="..........................................................."
257	queue=none
258	read_from_config=""
259	restart_run=false
260	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
261	if [[ $return_addres = 130.75.105.158 ]]
262	then
263	return_addres=172.20.25.41
264	echo "+++ WARNING: return_addres changed to $return_addres !!!!!"
265	fi
266	return_password=""
267	return_username=$LOGNAME
268	remotecall=false
269	remote_username=""
270	run_coupled_model=false
271	run_mode=""
272	scirocco=false
273	store_on_archive_system=true
274	striche=" ----------------------------------------------------------------------------"
275	silent=false
276	source_list=""
277	source_path=SOURCE
278	tasks_per_node=""
279	threads_per_task=1
280	tmpcreate=false
281	tmp_data_catalog=""
282	transfer_problems=false
283	usern=$LOGNAME
284	working_directory=`pwd`
285	TOPT=""
286	XOPT=""
287	zeit=$( date \| cut -c 12-19 )
288
289	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
290	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
291
292	typeset -R30 calltime
293	typeset -L20 spalte1
294	typeset -L40 spalte2
295	typeset -L60 spalte3
296	typeset -L35 string1=`date`
297	typeset -L12 string2=$usern
298	typeset -L12 string3=$localhost_realname
299	typeset -L12 string4
300	typeset -L12 string5
301	typeset -L30 version="MRUN 2.0 Rev$Rev: 265 $"
302
303
304
305	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
306	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
307
308	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
309	# EXPORTIERT WERDEN
310	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
311	export group_number input_list memory numprocs output_list queue run_mode
312
313
314
315	# FEHLERBEHANDLUNG
316	# BEI EXIT:
317	trap 'rm -rf $working_directory/tmp_mrun
318	if [[ $locat != localhost ]]
319	then
320	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
321	# then
322	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
323	#MRUN-calls on $localhost
324	#
325	#date and time user localhost remotehost termination mrun-command
326	#--------------------------------------------------------------------------------------------------------------------
327	#%STATEND%
328	# chmod 666 ${mrun_path}/statistik/mrun_statistik
329	# fi
330	#
331	# # EINTRAG IN DIE STATISTIK-DATEI
332	# string4=$host
333	# string5=$locat
334	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
335	# then
336	# if [[ $do_batch = true ]]
337	# then
338	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
339	# else
340	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
341	# fi
342	# fi
343	echo " " > /dev/null
344	fi
345
346	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
347	then
348
349	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
350	(( i = 0 ))
351	while (( i < iec ))
352	do
353	(( i = i + 1 ))
354	printf "\n *** Execution of ERROR-command:\n"
355	printf " >>> ${err_command[$i]}\n"
356	eval ${err_command[$i]}
357	done
358	if [[ -n $interpreted_config_file ]] then
359	rm -rf $interpreted_config_file
360	fi
361	if [[ -n .mrun_environment ]] then
362	rm -rf .mrun_environment
363	fi
364	if [[ $tmpcreate = true ]]
365	then
366	printf "\n *** Contents of \"$TEMPDIR\":\n"
367	ls -al; cd
368	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
369	fi
370	if [[ "$dvrserver_id" != "" ]]
371	then
372	echo "+++ killing dvrserver_id=$dvrserver_id"
373	kill $dvrserver_id
374	fi
375	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
376	then
377	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
378	fi
379	printf "\n\n+++ MRUN killed \n\n"
380	elif [[ $locat != control_c ]]
381	then
382	printf "\n\n --> all actions finished\n\n"
383	printf " Bye, bye $usern !!\n\n"
384	fi' exit
385
386
387	# BEI TERMINAL-BREAK:
388	trap 'rm -rf $working_directory/tmp_mrun
389	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
390	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
391	then
392	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
393	fi
394	if [[ "$dvrserver_id" != "" ]]
395	then
396	echo "+++ killing dvrserver_id=$dvrserver_id"
397	kill $dvrserver_id
398	fi
399	printf "\n+++ MRUN killed by \"^C\" \n\n"
400	locat=control_c
401	exit
402	' 2
403
404
405	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
406	# BEEN SET
407	if [[ "$PALM_BIN" = "" ]]
408	then
409	printf "\n +++ environment variable PALM_BIN has not been set"
410	printf "\n please set it to the directory where the PALM scripts are located"
411	locat=palm_bin; exit
412	fi
413	export PATH=$PALM_BIN:$PATH
414
415
416
417	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
418	# FUER FOLGEJOBS BENOETIGT WIRD
419	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:Op:P:q:r:R:s:St:T:u:U:vxX:Y: option
420	do
421	case $option in
422	(a) afname=$OPTARG;;
423	(A) store_on_archive_system=false; mc="$mc -A";;
424	(b) do_batch=true; mc="$mc -b";;
425	(B) delete_temporary_catalog=false; mc="$mc -B";;
426	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
427	(C) restart_run=true; mc="$mc -C";;
428	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
429	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
430	(F) job_on_file="-D"; mc="$mc -F";;
431	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
432	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
433	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
434	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
435	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
436	(I) ignore_archive_error=true; mc="$mc -I";;
437	(k) keep_data_from_previous_run=true; mc="$mc -k";;
438	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
439	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
440	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
441	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
442	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
443	(O) use_openmp=true; mc="$mc -O";;
444	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
445	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
446	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
447	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
448	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
449	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
450	(S) read_from_config=false; mc="$mc -S";;
451	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
452	(T) tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
453	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
454	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
455	(v) silent=true; mc="$mc -v";;
456	(x) do_trace=true;set -x; mc="$mc -x";;
457	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
458	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
459	(\?) printf "\n +++ unknown option $OPTARG \n"
460	printf "\n --> type \"$0 ?\" for available options \n"
461	locat=parameter;exit;;
462	esac
463	done
464
465
466	# EVTL. POSITIONSPARAMETER EINLESEN
467	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
468	shift OPTIND-1
469
470
471	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
472	if [[ "$1" = "?" ]]
473	then
474	(printf "\n *** mrun can be called as follows:\n"
475	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -Y.. <modus>\n"
476	printf "\n Description of available options:\n"
477	printf "\n Option Description Default-Value"
478	printf "\n -a base name of input files equiv. -d"
479	printf "\n -A no archiving when using file-attribute fl"
480	printf "\n -b batch-job on local machine ---"
481	printf "\n -B do not delete temporary directory at end ---"
482	printf "\n -c configuration file .mrun.config"
483	printf "\n -d base name of files attached to program test"
484	printf "\n -D preprocessor(cpp)-directives \"\" "
485	printf "\n -F create remote job file only ---"
486	printf "\n -h execution host $localhost_realname"
487	printf "\n -i INPUT control list \"\" "
488	printf "\n -I archiving errors of previous batch-jobs"
489	printf "\n will be ignored"
490	printf "\n -k keep data from previous run"
491	printf "\n -K additional conditions for controling"
492	printf "\n usage of conditional code and"
493	printf "\n env-variables in configuration file \"\" "
494	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
495	printf "\n -M Makefile name Makefile"
496	printf "\n -n node usage (shared/not_shared) depending on -h"
497	printf "\n -o OUTPUT control list \"\" "
498	printf "\n -O use OpenMP ---"
499	printf "\n -p software package list \"\" "
500	printf "\n -q queue \"$queue\" "
501	printf "\n -r run control list (combines -i -o) \"\" "
502	printf "\n -s filenames of routines to be compiled \"\" "
503	printf "\n must end with .f, .f90, .F, or .c !"
504	printf "\n use \"..\" for more than one file and wildcards"
505	printf "\n -s TEST compiles all files with w-permit"
506	printf "\n -S config file interpreted by shellscript ---"
507	printf "\n -t allowed cpu-time in seconds (batch) 0"
508	printf "\n -T tasks per node depending on -h"
509	printf "\n -u username on remote machine \"\" "
510	printf "\n -v no prompt for confirmation ---"
511	printf "\n -x tracing of mrun for debug purposes ---"
512	printf "\n -X # of processors (on parallel machines) 1"
513	printf "\n -Y run coupled model, \"#1 #2\" with"
514	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
515	printf "\n "
516	printf "\n Possible values of positional parameter <modus>:"
517	printf "\n \"?\" - this outline \n\n") \| more
518	exit
519	elif [[ "$1" != "" ]]
520	then
521	printf "\n +++ positional parameter $1 unknown \n"
522	locat=parameter; exit
523	fi
524
525
526
527	# KURZE STARTMELDUNG
528	printf "\n*** $version "
529	printf "\n will be executed. Please wait ..."
530
531
532
533	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
534	if [[ ! -f $config_file ]]
535	then
536	printf "\n\n +++ configuration file: "
537	printf "\n $config_file"
538	printf "\n does not exist"
539	locat=connect; exit
540	fi
541
542
543	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
544	line=""
545	grep "%host_identifier" $config_file > tmp_mrun
546	while read line
547	do
548	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
549	then
550	HOSTNAME=`echo $line \| cut -d" " -s -f2`
551	host_identifier=`echo $line \| cut -d" " -s -f3`
552	if [[ $localhost_realname = $HOSTNAME ]]
553	then
554	localhost=$host_identifier
555	break
556	fi
557	fi
558	done < tmp_mrun
559
560	if [[ "$localhost" = "" ]]
561	then
562	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
563	printf "\n for local host \"$localhost_realname\"."
564	printf "\n Please add line"
565	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
566	printf "\n to the configuration file."
567	locat=localhost; exit
568	fi
569
570
571	# HOSTSPEZIFISCHE VARIABLEN SETZEN
572	case $localhost_realname in
573	(breg-en0\|berni-en0) archive_system=tivoli;;
574	(cs*) archive_system=ut;;
575	(fimm.bccs.uib.no) fimm=true;;
576	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
577	(hreg-en0\|hanni-en0) archive_system=tivoli;;
578	(scirocco) scirocco=true;;
579	esac
580
581
582
583	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
584	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
585	[[ "$afname" = "" ]] && afname=$fname
586
587
588	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
589	if [[ "$run_mode" != "" ]]
590	then
591	input_list="$input_list $run_mode"
592	output_list="$output_list $run_mode"
593	fi
594
595
596	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
597	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
598	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
599	# STARTET)
600	if [[ "$fromhost" = "" ]]
601	then
602	fromhost=$localhost
603	fi
604
605
606	# PRUEFEN, OB MRUN NUR TESTWEISE AUF DER LOKALEN MASCHINE KOMPILIEREN SOLL
607	if [[ "$source_list" = LOCAL_COMPILE_TEST ]]
608	then
609	source_list=TEST
610	local_compile=true
611	host=$localhost
612	fi
613
614
615	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
616	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
617	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
618	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
619	if [[ -n $host && "$host" != $localhost ]]
620	then
621	do_batch=true
622	do_remote=true
623	case $host in
624	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|nech\|necriam\|lcsgib\|lcsgih\|lctit\|unics\|lcxt4) true;;
625	(*) printf "\n"
626	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
627	printf "\n is not available"
628	locat=nqs; (( iec = 0 )); exit;;
629	esac
630	else
631	host=$localhost
632	fi
633
634
635	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
636	if [[ -n $additional_conditions ]]
637	then
638	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
639	cond1=`echo $additional_conditions \| cut -d" " -f1`
640	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
641	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
642	if [[ -n $dummy ]]
643	then
644	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
645	locat=options; exit
646	fi
647	fi
648
649
650	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
651	if [[ $run_coupled_model = true ]]
652	then
653
654	if [[ -n $coupled_dist ]]
655	then
656
657	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
658	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
659
660	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
661	then
662
663	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
664	printf "\n PEs (total) : $numprocs"
665	printf "\n PEs (atmosphere): $numprocs_atmos"
666	printf "\n PEs (ocean) : $numprocs_ocean"
667	locat=coupling; exit
668
669	# REARRANGING BECAUSE CURRENTLY ONLY 1:1 TOPOLOGIES ARE SUPPORTED
670	# THIS SHOULD BE REMOVED IN FUTURE
671	elif (( $numprocs_ocean != $numprocs_atmos ))
672	then
673
674	printf "\n +++ currently only 1:1 topologies are supported"
675	printf "\n PEs (total) : $numprocs"
676	printf "\n PEs (atmosphere): $numprocs_atmos"
677	printf "\n PEs (ocean) : $numprocs_ocean"
678	(( numprocs_atmos = $numprocs / 2 ))
679	(( numprocs_ocean = $numprocs / 2 ))
680	printf "\n +++ rearranged topology to $numprocs_atmos:$numprocs_ocean"
681
682	fi
683
684	else
685
686	(( numprocs_ocean = $numprocs / 2 ))
687	(( numprocs_atmos = $numprocs / 2 ))
688
689	fi
690	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
691
692	# GET coupled_mode FROM THE CONFIG FILE
693	line=""
694	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
695	while read line
696	do
697	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && ( $(echo $line \| cut -d" " -s -f4) = $cond1 \|\| $(echo $line \| cut -d" " -s -f4) = $cond2 ) ]]
698	then
699	coupled_mode="mpi2"
700	fi
701	done < tmp_mrun
702
703	fi
704
705
706	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
707	# ARCHIVIERUNG FEHLGESCHLAGEN IST
708	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
709	then
710	if [[ $ignore_archive_error = false ]]
711	then
712	printf "\n +++ data archiving of previous run failed"
713	printf "\n see directory \~/job_queue on remote machine"
714	locat=archive; exit
715	else
716	printf "\n +++ warning: data archiving in a previous run failed"
717	printf "\n MRUN continues, trying to get backup copy"
718	fi
719	fi
720
721
722
723	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
724	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
725	if [[ "$read_from_config" = false ]]
726	then
727
728	[[ $silent = false ]] && printf "\n Reading the configuration file... "
729	while read zeile
730	do
731	[[ $silent = false ]] && printf "."
732
733
734	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
735	# ERSETZEN
736	eval zeile=\"$zeile\"
737
738
739	# INTERPRETATION DER ZEILE
740	if [[ "$(echo $zeile)" = "" ]]
741	then
742	# LEERZEILE, KEINE AKTION
743	continue
744
745	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
746	then
747
748	# ZEILE IST KOMMENTARZEILE
749	true
750
751	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
752	then
753
754	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
755	zeile=$(echo $zeile \| cut -c2-)
756	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
757	var=`echo $zeile \| cut -d" " -f1`
758	value=`echo $zeile \| cut -d" " -s -f2`
759	for_host=`echo $zeile \| cut -d" " -s -f3`
760	for_cond1=`echo $zeile \| cut -d" " -s -f4`
761	for_cond2=`echo $zeile \| cut -d" " -s -f5`
762
763	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
764	then
765
766	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
767	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
768	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
769
770
771	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
772	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
773	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
774	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
775	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
776	# KONFIGURATIONSDATEI
777	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
778	then
779	eval $var=\$value
780
781	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
782	if [[ $do_trace = true ]]
783	then
784	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
785	fi
786	fi
787
788	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
789	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
790	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
791	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
792	if [[ $var = host ]]
793	then
794	if [[ -n $host && "$host" != $localhost ]]
795	then
796	do_batch=true
797	do_remote=true
798	case $host in
799	(ibm\|ibms\|ibmy\|lcsgib\|lcsgih\|lctit\|nech\|necriam\|unics\|lcxt4) true;;
800	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
801	printf "\n is not available"
802	locat=nqs; exit;;
803	esac
804	else
805	host=$localhost
806	fi
807	fi
808
809	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
810	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
811	# DEN PROGRAMMEN BENOETIGT WERDEN
812	export $var
813	fi
814
815
816
817
818	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
819	then
820
821	# ZEILE DEFINIERT ERROR-KOMMANDO
822	(( iec = iec + 1 ))
823	zeile=$(echo $zeile \| cut -c4-)
824	err_command[$iec]="$zeile"
825
826	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
827	then
828
829	# ZEILE DEFINIERT INPUT-KOMMANDO
830	(( iic = iic + 1 ))
831	zeile=$(echo $zeile \| cut -c4-)
832	in_command[$iic]="$zeile"
833
834	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
835	then
836
837	# ZEILE DEFINIERT OUTPUT-KOMMANDO
838	(( ioc = ioc + 1 ))
839	zeile=$(echo $zeile \| cut -c4-)
840	out_command[$ioc]="$zeile"
841
842	else
843
844	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
845	# s2a: in/out - Feld
846	# s2b: loc - Feld (optional)
847	# s2c: tr/ar - Feld (optional)
848	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
849	s1=`echo $zeile \| cut -d" " -f1`
850	s2=`echo $zeile \| cut -d" " -s -f2`
851	s2a=$(echo $s2 \| cut -d":" -f1)
852	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
853	then
854	s2b=""
855	s2c=""
856	else
857	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
858	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
859	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
860	fi
861	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
862	s3=`echo $zeile \| cut -d" " -f3`
863	s4=`echo $zeile \| cut -d" " -s -f4`
864	s5=`echo $zeile \| cut -d" " -s -f5`
865	s6=`echo $zeile \| cut -d" " -s -f6`
866
867
868	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
869	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
870	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
871	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
872	# HANDEN SEIN MUSS (D.H. s2b = loc)
873	IFSALT="$IFS"; IFS="$IFS:"
874	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
875	then
876	found=false
877	for actual in $input_list
878	do
879	for formal in $s3
880	do
881	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
882	done
883	done
884	if [[ $found = true ]]
885	then
886	(( iin = iin + 1 ))
887	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
888	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
889	extin[$iin]=$s6
890	fi
891	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
892	then
893	found=false
894	for actual in $output_list
895	do
896	for formal in $s3
897	do
898	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
899	done
900	done
901	if [[ $found = true ]]
902	then
903	(( iout = iout + 1 ))
904	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
905	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
906	fi
907	elif [[ "$s2a" != in && "$s2a" != out ]]
908	then
909	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
910	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
911	locat=connect; exit
912	fi
913	IFS="$IFSALT"
914	fi
915	done < $config_file
916
917	else
918
919
920	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
921	[[ $silent = false ]] && printf "..."
922	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
923	export interpreted_config_file=.icf.$RANDOM
924
925
926
927	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
928	# VERFUEGUNG STELLEN
929	cat > .mrun_environment << %%END%%
930	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
931	config_file = '$config_file', do_remote = '$do_remote',
932	do_trace = '$do_trace', host = '$host',
933	input_list = '$input_list', icf = '$interpreted_config_file',
934	localhost = '$localhost', output_list = '$output_list' /
935
936	%%END%%
937
938	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
939	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
940	mrun_memory=$memory
941	mrun_group_number=$group_number
942	mrun_cpumax=$cpumax
943	mrun_numprocs=$numprocs
944
945	if [[ $localhost_realname = "sx-fep" ]]
946	then
947	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
948	else
949	interpret_config.x
950	fi
951	rm .mrun_environment
952
953
954	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
955	chmod u+x $interpreted_config_file
956	export PATH=$PATH:.
957	. $interpreted_config_file
958	rm $interpreted_config_file
959
960
961	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
962	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
963	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
964	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
965	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
966
967	fi
968
969
970	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
971	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
972	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
973	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
974	if [[ "$SOURCES_COMPLETE" = "" ]]
975	then
976
977	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
978	# VEREINBART WURDE
979	source_path=""
980	line=""
981	grep "%source_path" $config_file > tmp_mrun
982	while read line
983	do
984	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
985	then
986	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
987	then
988	global_source_path=`echo $line \| cut -d" " -f2`
989	fi
990	fi
991	done < tmp_mrun
992
993	line=""
994	found=false
995	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
996	while read line
997	do
998	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
999	then
1000	if [[ $found = true ]]
1001	then
1002	printf "\n\n +++ more than one source path found in configuration file"
1003	printf "\n for local host \"$localhost\" "
1004	locat=source_path; exit
1005	fi
1006	source_path=`echo $line \| cut -d" " -f2`
1007	found=true
1008	fi
1009	done < tmp_mrun
1010	rm tmp_mrun
1011
1012	if [[ "$source_path" = "" ]]
1013	then
1014	if [[ "$global_source_path" != "" ]]
1015	then
1016	source_path=$global_source_path
1017	else
1018	printf "\n\n +++ no source path found in configuration file"
1019	printf "\n for local host \"$localhost\" "
1020	locat=source_path; exit
1021	fi
1022	fi
1023	eval source_path=$source_path
1024
1025	if [[ ! -d $source_path ]]
1026	then
1027	printf "\n\n +++ source path \"$source_path\" on local host"
1028	printf "\n \"$localhost\" does not exist"
1029	locat=source_path; exit
1030	fi
1031
1032	fi
1033
1034
1035	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
1036	# DURCH OPTION -G MITGETEILT)
1037	if [[ "$global_revision" = "" ]]
1038	then
1039	global_revision=`svnversion $source_path 2>/dev/null`
1040	global_revision="Rev: $global_revision"
1041	fi
1042
1043
1044	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
1045	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
1046	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
1047	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
1048	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
1049	if [[ -n $host && "$host" != $localhost ]]
1050	then
1051	do_batch=true
1052	do_remote=true
1053	case $host in
1054	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|lcsgib\|lcsgih\|lctit\|nech\|necriam\|unics\|lcxt4) true;;
1055	(*) printf "\n"
1056	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
1057	printf "\n is not available"
1058	locat=nqs; (( iec = 0 )); exit;;
1059	esac
1060	else
1061	host=$localhost
1062	fi
1063
1064
1065	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
1066	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1067	then
1068
1069	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
1070	if [[ ! -n $numprocs ]]
1071	then
1072	printf "\n"
1073	printf "\n +++ option \"-K parallel\" requires additional specification"
1074	printf "\n of the number of processors to be used by"
1075	printf "\n mrun-option \"-X\" or by environment-variable"
1076	printf "\n \"numprocs\" in the configuration file"
1077	locat=numprocs; (( iec = 0 )); exit
1078	fi
1079
1080	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
1081	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
1082	# GESAMTPROZESSORANZAHL IST
1083	if [[ $host = nech \|\| $host = necriam \|\| $host = ibmh \|\| $host = ibmb \|\| $host = ibms ]]
1084	then
1085	[[ "$tasks_per_node" = "" ]] && tasks_per_node=6
1086	(( ival = $tasks_per_node ))
1087	(( pes = numprocs ))
1088	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1089	# then
1090	# (( pes = pes - 1 ))
1091	# fi
1092	(( ii = pes / ival ))
1093	if (( pes - ii * ival > 0 ))
1094	then
1095	printf "\n"
1096	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1097	printf "\n divisor of the total number of processors (option \"-X\")"
1098	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1099	locat=tasks_per_node; (( iec = 0 )); exit
1100	fi
1101	fi
1102
1103	# IBMY HAT NUR EINEN KNOTEN
1104	if [[ $host = ibmy ]]
1105	then
1106	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1107	then
1108	printf "\n"
1109	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1110	printf "\n total number of processors (option \"-X\")"
1111	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1112	locat=tasks_per_node; (( iec = 0 )); exit
1113	fi
1114	fi
1115
1116	# FALLS OPENMP PARALLELISIERUNG VERWENDET WERDEN SOLL, ANZAHL VON THREADS
1117	# SETZEN UND ZAHL DER TASKS PRO KNOTEN AUF 1 SETZEN
1118	if [[ $use_openmp = true ]]
1119	then
1120	threads_per_task=$tasks_per_node
1121	tasks_per_node=1
1122	fi
1123	OOPT="-O $threads_per_task"
1124	TOPT="-T $tasks_per_node"
1125
1126	# GESAMTZAHL DER KNOTEN BESTIMMEN
1127	if [[ "$tasks_per_node" != "" ]]
1128	then
1129	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1130	fi
1131
1132	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1133	# SETZEN
1134	if [[ $node_usage = default ]]
1135	then
1136	if [[ $host = ibms ]]
1137	then
1138	node_usage=shared
1139	elif [[ $host = lctit ]]
1140	then
1141	node_usage=RAM64GB
1142	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1143	then
1144	node_usage=singlejob
1145	else
1146	node_usage=not_shared
1147	fi
1148	fi
1149
1150	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != RAM64GB ]]
1151	then
1152	printf "\n"
1153	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1154	printf "\n \"shared\" or \"not_shared\""
1155	locat=tasks_per_node; (( iec = 0 )); exit
1156	fi
1157
1158	fi
1159
1160	# PRUEFEN, OB HOSTFILE EXISTIERT
1161	if [[ -n $hostfile ]]
1162	then
1163	if [[ ! -f $hostfile ]]
1164	then
1165	printf "\n"
1166	printf "\n +++ hostfile \"$hostfile\" does not exist"
1167	locat=hostfile; exit
1168	fi
1169	fi
1170
1171	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1172	if [[ $host = ibmy && $do_remote = false ]]
1173	then
1174	if [[ ! -f $HOME/.rhosts ]]
1175	then
1176	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1177	printf "\n\n *** file:"
1178	printf "\n $HOME/.rhosts"
1179	printf "\n was created\n"
1180	fi
1181	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1182	then
1183	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1184	printf "\n\n *** file:"
1185	printf "\n $HOME/.rhosts"
1186	printf "\n was extended by the name of the current host\n"
1187	fi
1188	fi
1189
1190
1191
1192	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1193	if [[ $queue = none ]]
1194	then
1195	case $host in
1196	(ibmb) if [[ $node_usage = shared ]]
1197	then
1198	queue=cshare
1199	else
1200	queue=csolo
1201	fi;;
1202	(ibmh) if [[ $node_usage = shared ]]
1203	then
1204	queue=cshare
1205	else
1206	queue=csolo
1207	fi;;
1208	(ibmy) queue=parallel;;
1209	(lcsgib) queue=bigq;;
1210	(lcsgih) queue=bigq;;
1211	(lctit) queue=RAM64GB;;
1212	(nech) queue=none;;
1213	(necriam) queue=SP;;
1214	(unics) queue=unics;;
1215	esac
1216	fi
1217
1218
1219	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1220	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1221	# ERMITTELN
1222	(( i = 0 ))
1223	while (( i < iin ))
1224	do
1225	(( i = i + 1 ))
1226	(( maxcycle = 0 ))
1227
1228	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1229	if [[ "${actionin[$i]}" = di ]]
1230	then
1231	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1232	# REM-MASCHINE AUSWERTEN
1233	eval filename=${pathin[$i]}/${endin[$i]}
1234	else
1235	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1236	# REM-MASCHINE AUSWERTEN
1237	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1238	fi
1239
1240	# PRUEFEN AUF VORHANDENSEIN
1241	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1242	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1243	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1244	then
1245	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1246	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1247	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1248	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1249	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1250	if [[ "${transin[$i]}" != "locopt" ]]
1251	then
1252	printf "\n\n +++ INPUT-file: "
1253	if [[ "${extin[$i]}" = "" ]]
1254	then
1255	printf "\n $filename"
1256	else
1257	printf "\n $filename.${extin[$i]}"
1258	fi
1259	printf "\n does not exist\n"
1260	locat=input; exit
1261	else
1262	transin[$i]="unavailable"
1263	fi
1264	else
1265
1266	# ZYKLUSNUMMER FESTSTELLEN
1267	ls -1 -d $filename > filelist 2>/dev/null
1268	ls -1 -d $filename.* >> filelist 2>/dev/null
1269	while read zeile
1270	do
1271	cycle=$(print $zeile \| cut -f2 -d".")
1272	if [[ "$cycle" = "$zeile" ]]
1273	then
1274	(( icycle = 0 ))
1275	elif [[ "$cycle" = "${extin[$i]}" ]]
1276	then
1277	(( icycle = 0 ))
1278	else
1279	(( icycle = $cycle ))
1280	fi
1281	if (( icycle > maxcycle ))
1282	then
1283	(( maxcycle = icycle ))
1284	file_to_be_used=$zeile
1285	fi
1286	done <filelist
1287	rm filelist
1288
1289	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1290	if (( maxcycle > 0 ))
1291	then
1292	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1293	then
1294	filename=${filename}.$maxcycle.${extin[$i]}
1295	else
1296	filename=${filename}.$maxcycle
1297	fi
1298	else
1299	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1300	then
1301	filename=${filename}.${extin[$i]}
1302	fi
1303	fi
1304
1305	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1306	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1307	absnamein[$i]=$filename
1308	if (( maxcycle > 0 ))
1309	then
1310	if [[ "${actionin[$i]}" = di ]]
1311	then
1312	frelin[$i]=${endin[$i]}.$maxcycle
1313	else
1314	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1315	fi
1316	else
1317	if [[ "${actionin[$i]}" = di ]]
1318	then
1319	frelin[$i]=${endin[$i]}
1320	else
1321	frelin[$i]=${afname}${endin[$i]}
1322	fi
1323	fi
1324
1325	fi
1326	done
1327
1328
1329	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1330	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1331	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1332	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1333	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1334	(( i = 0 ))
1335	while (( i < iout ))
1336	do
1337	(( i = i + 1 ))
1338	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1339	then
1340	if [[ "${actionout[$i]}" = tr ]]
1341	then
1342	actionout[$i]=""
1343	elif [[ "${actionout[$i]}" = trpe ]]
1344	then
1345	actionout[$i]=pe
1346	elif [[ "${actionout[$i]}" = tra ]]
1347	then
1348	actionout[$i]=a
1349	fi
1350	(( maxcycle = 0 ))
1351	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1352	eval catalogname=${pathout[$i]}
1353	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1354	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1355	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1356	then
1357
1358	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1359	if cat /dev/null > $filename
1360	then
1361	rm $filename
1362	else
1363
1364	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1365	if [[ ! -d $catalogname ]]
1366	then
1367	if mkdir -p $catalogname
1368	then
1369	printf "\n\n *** directory:"
1370	printf "\n $catalogname"
1371	printf "\n was created\n"
1372	else
1373	printf "\n\n +++ OUTPUT-file:"
1374	printf "\n $filename"
1375	printf "\n cannot be created, because directory does not exist"
1376	printf "\n and cannot be created either"
1377	printf "\n"
1378	locat=output ; exit
1379	fi 2>/dev/null
1380	else
1381	printf "\n\n +++ OUTPUT-file:"
1382	printf "\n $filename"
1383	printf "\n cannot be created, although directory exists"
1384	printf "\n"
1385	locat=output ; exit
1386	fi
1387	fi 2>/dev/null
1388	else
1389
1390	# ZYKLUSNUMMER FESTSTELLEN
1391	ls -1 -d $filename > filelist 2>/dev/null
1392	ls -1 -d $filename.* >> filelist 2>/dev/null
1393	while read zeile
1394	do
1395	cycle=$(print $zeile \| cut -f2 -d".")
1396	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1397	then
1398	(( icycle = 1 ))
1399	else
1400	(( icycle = $cycle + 1 ))
1401	fi
1402	if (( icycle > maxcycle ))
1403	then
1404	(( maxcycle = icycle ))
1405	fi
1406	done <filelist
1407	rm filelist
1408	fi
1409
1410	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1411	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1412	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1413	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1414	if [[ "${actionout[$i]}" != a ]]
1415	then
1416	if (( maxcycle > 0 ))
1417	then
1418	filename=${filename}.$maxcycle
1419	if cat /dev/null > $filename
1420	then
1421	rm $filename
1422	else
1423	printf "\n +++ OUTPUT-file:"
1424	printf "\n $filename"
1425	printf "\n cannot be created"
1426	locat=output ; exit
1427	fi
1428	fi
1429	else
1430	(( maxcycle = maxcycle - 1 ))
1431	if (( maxcycle > 0 ))
1432	then
1433	filename=${filename}.$maxcycle
1434	fi
1435	fi
1436
1437	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1438	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1439	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1440	pathout[$i]=$filename
1441	if (( maxcycle > 0 ))
1442	then
1443	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1444	else
1445	frelout[$i]=${fname}${endout[$i]}
1446	fi
1447
1448	fi
1449	done
1450
1451
1452	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1453	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1454	then
1455	if [[ "$dvr_inc" = "" ]]
1456	then
1457	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1458	printf "\n This is required for the dvrp_graphics package.\n"
1459	locat=dvr; exit
1460	fi
1461	if [[ "$dvr_lib" = "" ]]
1462	then
1463	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1464	printf "\n This is required for the dvrp_graphics package.\n"
1465	locat=dvr; exit
1466	fi
1467	fi
1468
1469
1470	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1471	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1472	# UEBERSETZT ZU WERDEN)
1473	if [[ "$mainprog" = "" && "$executable" = "" ]]
1474	then
1475	printf "\n +++ neither main program nor executable defined"
1476	locat=source; exit
1477	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1478	then
1479	printf "\n +++ main program as well as executable defined"
1480	locat=source; exit
1481	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1482	then
1483	do_compile=false
1484	fi
1485
1486
1487	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1488	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1489	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1490	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1491	then
1492	rm -rf SOURCES_FOR_RUN_$fname
1493	mkdir SOURCES_FOR_RUN_$fname
1494	fi
1495
1496
1497	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1498	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1499	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1500	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1501	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1502	then
1503
1504	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1505	[[ "$source_list" = WP ]] && source_list=WRITE_PERMIT
1506
1507
1508	# EVTL. ZU UEBERSETZENDE PROGRAMMTEILE DADURCH BESTIMMEN, DASS GEPRUEFT
1509	# WIRD, WELCHE DATEIEN WRITE-PERMIT BESITZEN (DATEIEN SOLLTEN DESHALB
1510	# UNTER RCS-KONTROLLE STEHEN). MIT DER VARIABLEN EXCLUDE KOENNEN
1511	# BESTIMMTE DATEIEN GRUNDSAETZLICH VON DER UEBERSETZUNG AUSGESCHLOSSEN
1512	# WERDEN. DIES IST NUR BEI MANUELLEM START VON MRUN DURCH DEN BENUTZER
1513	# MOEGLICH, DA BEI AUTOMATISCHEN RESTARTS TEST DURCH DIE TATSAECHLICH
1514	# ZU UBERSETZENDEN DATEIEN ERSETZT IST.
1515	# ALLE ERMITTELTEN DATEIEN WERDEN IM VERZEICHNIS SOURCES_FOR_RUN_...
1516	# GESAMMELT
1517	if [[ "$source_list" = WRITE_PERMIT ]]
1518	then
1519
1520	source_list=""
1521	cd $source_path
1522
1523
1524	# ALLE MOEGLICHEN QUELLCODEDATEIEN AUFLISTEN
1525	Names=$(ls -1 *.f90 2>&1)
1526	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && Filenames="$Names"
1527	Names=$(ls -1 *.F90 2>&1)
1528	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && Filenames="$Filenames $Names"
1529	Names=$(ls -1 *.F 2>&1)
1530	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && Filenames="$Filenames $Names"
1531	Names=$(ls -1 *.f 2>&1)
1532	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && Filenames="$Filenames $Names"
1533	Names=$(ls -1 *.c 2>&1)
1534	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && Filenames="$Filenames $Names"
1535
1536
1537	# DATEIEN MIT WRITE-PERMIT NACH SOURCES_FOR_RUN_... KOPIEREN
1538	for dateiname in $Filenames
1539	do
1540	if [[ -w $dateiname ]]
1541	then
1542	if [[ "$exclude" = "" \|\| $(echo $exclude \| grep -c $dateiname) = 0 ]]
1543	then
1544	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1545	source_list=$source_list"$dateiname "
1546	fi
1547	fi
1548	done
1549
1550	cd - > /dev/null
1551
1552
1553	elif [[ "$source_list" = LOCALLY_MODIFIED ]]
1554	then
1555
1556	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1557	source_list=""
1558	cd $source_path
1559
1560
1561	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1562	if [[ ! -d .svn ]]
1563	then
1564	printf "\n\n +++ source directory"
1565	printf "\n \"$source_path\" "
1566	printf "\n is not under control of \"subversion\"."
1567	printf "\n Please do not use mrun-option \"-s LOCALLY MODIFIED\"\n"
1568	fi
1569
1570
1571	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1572	Filenames=""
1573	svn status > tmp_mrun
1574	while read line
1575	do
1576	firstc=`echo $line \| cut -c1`
1577	if [[ $firstc = M \|\| $firstc = "?" ]]
1578	then
1579	Name=`echo "$line" \| cut -c8-`
1580	extension=`echo $Name \| cut -d. -f2`
1581	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1582	then
1583	Filenames="$Filenames "$Name
1584	fi
1585	fi
1586	done < tmp_mrun
1587
1588
1589	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1590	for dateiname in $Filenames
1591	do
1592	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1593	source_list=$source_list"$dateiname "
1594	done
1595
1596	cd - > /dev/null
1597
1598
1599	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1600	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1601	# VORHANDEN
1602	elif [[ "$source_list" != "" && $restart_run != true ]]
1603	then
1604
1605	cd $source_path
1606
1607	for filename in $source_list
1608	do
1609
1610	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1611	if [[ $(print $filename \| grep -c "/") != 0 ]]
1612	then
1613	printf "\n +++ source code file: $filename"
1614	printf "\n must not contain (\"/\") "
1615	locat=source; exit
1616	fi
1617
1618	if [[ ! -f $filename ]]
1619	then
1620	printf "\n +++ source code file: $filename"
1621	printf "\n does not exist"
1622	locat=source; exit
1623	else
1624	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1625	fi
1626
1627	done
1628
1629	cd - > /dev/null
1630
1631	fi
1632
1633
1634	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1635	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1636	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1637	if [[ $restart_run != true ]]
1638	then
1639
1640	if [[ ! -f "$source_path/$mainprog" ]]
1641	then
1642	printf "\n\n +++ main program: $mainprog"
1643	printf "\n does not exist in source directory"
1644	printf "\n \"$source_path\"\n"
1645	locat=source; exit
1646	else
1647	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1648	then
1649	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1650	source_list=${mainprog}" $source_list"
1651	fi
1652	fi
1653	fi
1654
1655
1656	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1657	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1658	if [[ "$restart_run" != true ]]
1659	then
1660	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1661	if [[ ! -f $makefile ]]
1662	then
1663	printf "\n +++ file \"$makefile\" does not exist"
1664	locat=make; exit
1665	else
1666	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1667	fi
1668	fi
1669
1670
1671	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1672	if [[ $restart_run != true && "$add_source_path" != "" ]]
1673	then
1674
1675	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1676	if [[ ! -d $add_source_path ]]
1677	then
1678	printf "\n\n +++ WARNING: additional source code directory"
1679	printf "\n \"$add_source_path\" "
1680	printf "\n does not exist or is not a directory."
1681	printf "\n No source code will be used from this directory!\n"
1682	add_source_path=""
1683	sleep 3
1684	else
1685
1686	cd $add_source_path
1687	found=false
1688
1689	Names=$(ls -1 *.f90 2>&1)
1690	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1691	Names=$(ls -1 *.F90 2>&1)
1692	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1693	Names=$(ls -1 *.F 2>&1)
1694	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1695	Names=$(ls -1 *.f 2>&1)
1696	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1697	Names=$(ls -1 *.c 2>&1)
1698	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1699
1700	cd - > /dev/null
1701	cd SOURCES_FOR_RUN_$fname
1702
1703	# COPY MAKEFILE IF EXISTING
1704	if [[ -f $add_source_path/Makefile ]]
1705	then
1706	printf "\n\n *** user Makefile from directory"
1707	printf "\n \"$add_source_path\" is used \n"
1708	sleep 1
1709	cp $add_source_path/Makefile .
1710	fi
1711
1712	for dateiname in $AddFilenames
1713	do
1714	if [[ -f $dateiname ]]
1715	then
1716	printf "\n +++ source code file \"$dateiname\" found in additional"
1717	printf "\n source code directory \"$add_source_path\" "
1718	printf "\n but was also given with option \"-s\" which means that it should be taken"
1719	printf "\n from directory \"$source_path\"."
1720	locat=source; exit
1721	fi
1722
1723	cp $add_source_path/$dateiname .
1724	source_list="$source_list $dateiname"
1725
1726	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1727	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1728	then
1729	printf "\n\n +++ user file \"$dateiname\" "
1730	printf "\n is not listed in Makefile \n"
1731	locat=source; exit
1732	else
1733
1734	# Default User-Interface von der Liste entfernen, falls Datei
1735	# ein User-Interface enthaelt
1736	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1737	# then
1738	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1739	# then
1740	# rm -rf user_interface.f90
1741	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1742	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1743	# printf "\n since a user-interface is found in file"
1744	# printf "\n \"$add_source_path/$dateiname\" \n"
1745	# sleep 3
1746	# else
1747	if [[ $found = false ]]
1748	then
1749	found=true
1750	printf "\n\n *** following user file(s) added to the"
1751	printf " files to be translated:\n "
1752	fi
1753	printf "$dateiname "
1754	sleep 0.5
1755	fi
1756	done
1757	[[ $found = true ]] && printf "\n"
1758	cd - > /dev/null
1759	fi
1760	fi
1761
1762
1763	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1764	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1765	if [[ $restart_run != true && -n $package_list ]]
1766	then
1767
1768	cd $source_path
1769
1770	for package in $package_list
1771	do
1772
1773	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1774
1775	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1776	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1777	# LIEFERT
1778	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1779
1780
1781	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1782	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1783	for source_list_name in $package_source_list
1784	do
1785	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1786	then
1787
1788	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1789	ending=`echo $source_list_name \| cut -f2 -d.`
1790	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1791	then
1792	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1793	source_list="$source_list $source_list_name"
1794	fi
1795	fi
1796	done
1797	done
1798
1799	cd - > /dev/null
1800	fi
1801
1802
1803	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1804	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1805	# if [[ "$restart_run" != true ]]
1806	# then
1807	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1808	# if [[ ! -f $makefile ]]
1809	# then
1810	# printf "\n +++ file \"$makefile\" does not exist"
1811	# locat=make; exit
1812	# else
1813	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1814	# fi
1815	# fi
1816
1817	fi # do_compile=true
1818
1819
1820	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1821	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1822	if [[ $do_compile = true ]]
1823	then
1824
1825	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1826	# ZUSAMMENSETZEN
1827	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1828	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1829	then
1830	cpp_options="${cpp_options},-D__ibm=__ibm"
1831	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1832	then
1833	cpp_options="$cpp_options -D__nec"
1834	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1835	then
1836	cpp_options="$cpp_options -D__lc"
1837	else
1838	cpp_options="$cpp_options -D__$localhost"
1839	fi
1840
1841	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1842	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1843	then
1844	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1845	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1846	else
1847	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1848	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1849	fi
1850
1851	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1852	if [[ -n $package_list ]]
1853	then
1854	for package in $package_list
1855	do
1856	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1857	then
1858	if [[ $package != "dvrp_graphics+1PE" ]]
1859	then
1860	cpp_options="${cpp_options},-D__$package=__$package"
1861	else
1862	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1863	export use_seperate_pe_for_dvrp_output=true
1864	fi
1865	else
1866	if [[ $package != "dvrp_graphics+1PE" ]]
1867	then
1868	cpp_options="$cpp_options -D__$package"
1869	else
1870	cpp_options="$cpp_options -D__dvrp_graphics"
1871	export use_seperate_pe_for_dvrp_output=true
1872	fi
1873	fi
1874	done
1875	fi
1876
1877	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1878	if [[ -n $cpp_opts ]]
1879	then
1880	for popts in $cpp_opts
1881	do
1882	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1883	then
1884	cpp_options="${cpp_options},-D__$popts=__$popts"
1885	else
1886	cpp_options="$cpp_options -D__$popts"
1887	fi
1888	done
1889	fi
1890
1891	else
1892
1893
1894	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1895	if [[ $do_remote = false ]]
1896	then
1897	if [[ ! -f $executable ]]
1898	then
1899	printf "\n +++ executable file: $executable"
1900	printf "\n does not exist"
1901	locat=executable; exit
1902	fi
1903	fi
1904	fi
1905
1906
1907	# JOBMODUS FESTSTELLEN
1908	if [[ "$ENVIRONMENT" = BATCH && $localhost != lctit \|\| "$QUEUE" != interactive && $localhost = lctit ]]
1909	then
1910	jobmo=BATCH
1911	else
1912	jobmo=INTERACTIVE
1913	fi
1914
1915
1916	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1917	# DURCH BENUTZER ANDERWEITIG VEREINBART
1918	if [[ "$compiler_name" = "" ]]
1919	then
1920
1921	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
1922	locat=compiler_name; exit
1923
1924	fi
1925
1926
1927	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
1928	[[ $localhost = necriam ]] && compiler_name=mpif90
1929
1930
1931
1932	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
1933	kennung=$RANDOM
1934	if [[ "$tmp_user_catalog" = "" ]]
1935	then
1936	if [[ $localhost = ibmb \|\| $localhost = ibmh ]]
1937	then
1938	tmp_user_catalog=$TMPDIR
1939	elif [[ $localhost = nech ]]
1940	then
1941	tmp_user_catalog=$WRKSHR
1942	else
1943	tmp_user_catalog=/tmp
1944	fi
1945	fi
1946	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
1947
1948
1949	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
1950	# BESTIMMEN
1951	if [[ "$tmp_data_catalog" = "" ]]
1952	then
1953	if [[ $localhost = ibmb \|\| $localhost = ibmh ]]
1954	then
1955	tmp_data_catalog=$WORK/mrun_restart_data
1956	elif [[ $localhost = nech ]]
1957	then
1958	tmp_data_catalog=$WRKSHR/mrun_restart_data
1959	else
1960	tmp_data_catalog=/tmp/mrun_restart_data
1961	fi
1962	fi
1963
1964
1965	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
1966	# ERSETZEN
1967	if [[ $do_remote = false && $do_compile = true ]]
1968	then
1969	eval fopts=\"$fopts\"
1970	eval lopts=\"$lopts\"
1971	fi
1972
1973
1974
1975	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
1976	fopts="$fopts $netcdf_inc $dvr_inc"
1977	lopts="$lopts $netcdf_lib $dvr_lib"
1978	ROPTS="$ropts"
1979	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxt4 ) && -n $numprocs ]]
1980	then
1981	XOPT="-X $numprocs"
1982	fi
1983
1984
1985
1986	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
1987	# GRAMM BENOETIGT
1988	done=false
1989	while [[ $done = false ]]
1990	do
1991	cputime=$cpumax
1992	if (( $cputime == 0 ))
1993	then
1994	if [[ $do_batch = true ]]
1995	then
1996	printf "\n +++ cpu-time is undefined"
1997	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
1998	printf "\n >>> "
1999	read cputime 1>/dev/null 2>&1
2000	else
2001	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
2002	fi
2003	else
2004	done=true
2005	fi
2006	cpumax=$cputime
2007	done
2008
2009	(( minuten = cputime / 60 ))
2010	(( sekunden = cputime - minuten * 60 ))
2011
2012
2013	# PRUEFEN DER KERNSPEICHERANFORDERUNG
2014	if [[ $do_batch = true ]]
2015	then
2016	done=false
2017	while [[ $done = false ]]
2018	do
2019	if (( memory == 0 ))
2020	then
2021	printf "\n +++ memory demand is undefined"
2022	printf "\n >>> Please type memory in MByte per process as INTEGER:"
2023	printf "\n >>> "
2024	read memory 1>/dev/null 2>&1
2025	else
2026	done=true
2027	fi
2028	done
2029	fi
2030
2031
2032	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
2033	if [[ $do_remote = true && -z $remote_username ]]
2034	then
2035	while [[ -z $remote_username ]]
2036	do
2037	printf "\n +++ username on remote host \"$host\" is undefined"
2038	printf "\n >>> Please type username:"
2039	printf "\n >>> "
2040	read remote_username
2041	done
2042	mc="$mc -u$remote_username"
2043	fi
2044
2045
2046	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
2047	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2048	then
2049	[[ "$mpilib" = "" ]] && export mpilib=mpt
2050	fi
2051
2052
2053
2054	###########################################################################
2055	# HEADER-AUSGABE
2056	###########################################################################
2057
2058
2059	calltime=$(date)
2060	printf "\n"
2061	# [[ $silent = false ]] && clear
2062	printf "#--------------------------------------------------------------# \n"
2063	printf "\| $version$calltime \| \n"
2064	printf "\| \| \n"
2065	spalte1="called on:"; spalte2=$localhost_realname
2066	printf "\| $spalte1$spalte2 \| \n"
2067	if [[ $local_compile = false ]]
2068	then
2069	if [[ $do_remote = true ]]
2070	then
2071	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2072	else
2073	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2074	fi
2075	else
2076	spalte1="compiling test only!"; spalte2=""
2077	fi
2078	printf "\| $spalte1$spalte2 \| \n"
2079	if [[ -n $numprocs ]]
2080	then
2081	spalte1="number of PEs:"; spalte2=$numprocs
2082	printf "\| $spalte1$spalte2 \| \n"
2083	fi
2084	if [[ -n $tasks_per_node ]]
2085	then
2086	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2087	printf "\| $spalte1$spalte2 \| \n"
2088	fi
2089	if [[ $threads_per_task != 1 ]]
2090	then
2091	spalte1="threads per task:"; spalte2="$threads_per_task"
2092	printf "\| $spalte1$spalte2 \| \n"
2093	fi
2094	printf "\| \| \n"
2095	if [[ $do_compile = true ]]
2096	then
2097	spalte1=cpp-directives:; spalte2=$cpp_options
2098	printf "\| $spalte1$spalte2 \| \n"
2099	zeile=$(echo "$cpp_options" \| cut -c41-)
2100	while [[ "$zeile" != "" ]]
2101	do
2102	spalte1=""
2103	spalte2=$zeile
2104	printf "\| $spalte1$spalte2 \| \n"
2105	zeile=$(echo "$zeile" \| cut -c41-)
2106	done
2107
2108	spalte1=compiler-options:; spalte2="$fopts"
2109	printf "\| $spalte1$spalte2 \| \n"
2110	zeile=$(echo "$fopts" \| cut -c41-)
2111	while [[ "$zeile" != "" ]]
2112	do
2113	spalte1=""
2114	spalte2=$zeile
2115	printf "\| $spalte1$spalte2 \| \n"
2116	zeile=$(echo "$zeile" \| cut -c41-)
2117	done
2118
2119	spalte1=linker-options:; spalte2=$lopts
2120	printf "\| $spalte1$spalte2 \| \n"
2121	zeile=$(echo "$lopts" \| cut -c41-)
2122	while [[ "$zeile" != "" ]]
2123	do
2124	spalte1=""
2125	spalte2=$zeile
2126	printf "\| $spalte1$spalte2 \| \n"
2127	zeile=$(echo "$zeile" \| cut -c41-)
2128	done
2129
2130	spalte1="main program":; spalte2=$mainprog
2131	printf "\| $spalte1$spalte2 \| \n"
2132	else
2133	spalte1=executable:; spalte2=$executable
2134	printf "\| $spalte1$spalte2 \| \n"
2135	fi
2136	printf "\| \| \n"
2137	spalte1="base name of files":; spalte2=$fname
2138	printf "\| $spalte1$spalte2 \| \n"
2139	if [[ $fname != $afname ]]
2140	then
2141	spalte1="base name of input files":; spalte2=$afname
2142	printf "\| $spalte1$spalte2 \| \n"
2143	fi
2144	spalte1="INPUT control list":; spalte2=$input_list
2145	printf "\| $spalte1$spalte2 \| \n"
2146	spalte1="OUTPUT control list":; spalte2=$output_list
2147	printf "\| $spalte1$spalte2 \| \n"
2148
2149	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2150	then
2151	spalte1="memory demand / PE":; spalte2="$memory MB"
2152	printf "\| $spalte1$spalte2 \| \n"
2153	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2154	printf "\| $spalte1$spalte2 \| \n"
2155	fi
2156
2157	if [[ $do_compile = true ]]
2158	then
2159	printf "\| \| \n"
2160	printf "\| Files to be compiled: \| \n"
2161	zeile=$source_list
2162	while [[ "$zeile" != "" ]]
2163	do
2164	spalte3=$zeile
2165	printf "\| $spalte3 \| \n"
2166	zeile=$(echo "$zeile" \| cut -c61-)
2167	done
2168	fi
2169	printf "#--------------------------------------------------------------#"
2170
2171
2172
2173	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2174	if [[ $do_trace = true ]]
2175	then
2176	(( i = 0 ))
2177	while (( i < iin ))
2178	do
2179	(( i = i + 1 ))
2180	if (( i == 1 ))
2181	then
2182	printf "\n\n >>> INPUT-file assignments:\n"
2183	fi
2184	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2185	done
2186	(( i = 0 ))
2187	while (( i < iout ))
2188	do
2189	(( i = i + 1 ))
2190	if (( i == 1 ))
2191	then
2192	printf "\n\n >>> OUTPUT-file assignments:\n"
2193	fi
2194	printf "\n ${localout[$i]} : ${pathout[$i]}"
2195	done
2196	(( i = 0 ))
2197	while (( i < iic ))
2198	do
2199	(( i = i + 1 ))
2200	if (( i == 1 ))
2201	then
2202	printf "\n\n >>> INPUT-commands:\n"
2203	fi
2204	printf "\n ${in_command[$i]}"
2205	done
2206	(( i = 0 ))
2207	while (( i < ioc ))
2208	do
2209	(( i = i + 1 ))
2210	if (( i == 1 ))
2211	then
2212	printf "\n\n >>> OUTPUT-commands:\n"
2213	fi
2214	printf "\n ${out_command[$i]}"
2215	done
2216	fi
2217
2218
2219	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2220	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2221	then
2222	antwort=dummy
2223	printf "\n\n"
2224	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2225	do
2226	printf " >>> everything o.k. (y/n) ? "
2227	read antwort
2228	done
2229	if [[ $antwort = n \|\| $antwort = N ]]
2230	then
2231	locat=user_abort; (( iec = 0 )); exit
2232	fi
2233	if [[ $do_batch = true ]]
2234	then
2235	printf " >>> batch-job will be created and submitted"
2236	else
2237	if [[ $local_compile = false ]]
2238	then
2239	printf " >>> MRUN will now continue to execute on this machine"
2240	else
2241	printf " >>> a test compilation will now be carried out on this machine"
2242	fi
2243	fi
2244	fi
2245
2246
2247
2248
2249	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2250	# CHENDE AKTIONEN DURCHGEFUEHRT
2251	if [[ $do_batch = false ]]
2252	then
2253
2254
2255	# TEMPORAEREN KATALOG ERZEUGEN
2256	mkdir -p $TEMPDIR
2257	chmod go+rx $TEMPDIR
2258	tmpcreate=true
2259
2260
2261	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2262	# TEMPORAERES VERZEICHNIS KOPIEREN
2263	if [[ $do_compile = true ]]
2264	then
2265
2266	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2267	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2268	if [[ $localhost = nech ]]
2269	then
2270	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2271	if mkdir -p $TEMPDIR_COMPILE
2272	then
2273	printf "\n *** \"$TEMPDIR_COMPILE\" "
2274	printf "\n is generated as temporary directory for cross compiling\n"
2275	else
2276	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2277	printf "\n needed for cross compilation failed"
2278	locat=compile
2279	exit
2280	fi
2281	else
2282	TEMPDIR_COMPILE=$TEMPDIR
2283	fi
2284
2285
2286	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2287	line=""
2288	grep "%depository_path" $config_file > tmp_mrun
2289	while read line
2290	do
2291	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2292	then
2293	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2294	then
2295	global_depository_path=`echo $line \| cut -d" " -s -f2`
2296	fi
2297	fi
2298	done < tmp_mrun
2299
2300	line=""
2301	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2302	while read line
2303	do
2304	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2305	then
2306	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2307	then
2308	local_depository_path=`echo $line \| cut -d" " -s -f2`
2309	fi
2310	fi
2311	done < tmp_mrun
2312
2313	if [[ "$local_depository_path" = "" ]]
2314	then
2315	if [[ "$global_depository_path" != "" ]]
2316	then
2317	local_depository_path=$global_depository_path
2318	else
2319	printf "\n\n +++ no depository path found in configuration file"
2320	printf "\n for local host \"$localhost\" "
2321	printf "\n please set \"\%depository_path\" in configuration file\n"
2322	locat=config_file; exit
2323	fi
2324	fi
2325	eval local_depository_path=$local_depository_path
2326	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2327	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2328
2329
2330	basename=`print $mainprog \| cut -f1 -d"."`
2331	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2332	if [[ ! -f $make_depository ]]
2333	then
2334	printf "\n"
2335	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2336	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2337	else
2338	cp $make_depository $TEMPDIR_COMPILE
2339	cd $TEMPDIR_COMPILE
2340	tar -xf $make_depository > /dev/null 2>&1
2341	cd - > /dev/null
2342	fi
2343
2344	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2345
2346	# FALLS USER-INTERFACE VORHANDEN UND AUF DATEI MIT ANDEREM NAMEN
2347	# ALS user_interface.f90 LIEGT, DIESEN GEAENDERTEN NAMEN INS
2348	# MAKEFILE EINTRAGEN
2349	# cd $TEMPDIR_COMPILE
2350	# interface_file=`grep -l "END SUBROUTINE user_parin" $source_list`
2351	# if [[ "$interface_file" != "" ]]
2352	# then
2353	# interface_file=`echo $interface_file \| cut -d"." -f1`
2354	# mv Makefile Makefile_old
2355	# sed "s/user_interface/$interface_file/g" Makefile_old > Makefile
2356	# fi
2357	# cd - > /dev/null
2358	else
2359	cp $executable ${TEMPDIR}/a.out
2360	fi
2361
2362
2363	# WECHSEL IN TEMPORAEREN KATALOG
2364	cd $TEMPDIR
2365	printf "\n *** changed to temporary directory: $TEMPDIR"
2366
2367
2368	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2369	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2370	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2371	# ERMITTELN
2372	(( i = 0 ))
2373	while (( i < iout ))
2374	do
2375	(( i = i + 1 ))
2376	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2377	then
2378	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2379	else
2380	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2381	fi
2382	done
2383
2384
2385	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2386	if [[ $do_compile = true ]]
2387	then
2388
2389
2390	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2391	printf "\n\n\n *** compilation starts \n$striche\n"
2392	printf " *** compilation with make using following options:\n"
2393	printf " make depository: $make_depository"
2394	printf " compilername: $compiler_name\n"
2395	printf " options: $fopts\n"
2396	printf " preprocessor-directives: $cpp_options \n"
2397	printf " linker-options: $lopts \n"
2398	printf " source code files: $source_list \n"
2399
2400	if [[ $localhost = nech ]]
2401	then
2402	ssh 136.172.44.192 -l $usern ". /SX/opt/etc/initsx.sh; cd \$HOME/work/${usern}.$kennung; sxmake -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2403	cp $TEMPDIR_COMPILE/a.out .
2404	[[ $? != 0 ]] && compile_error=true
2405	rm -rf $TEMPDIR_COMPILE
2406	elif [[ $localhost = lcsgib ]]
2407	then
2408	printf " compiler is called via ssh on \"bicegate\" using module \"$mpilib\" \n"
2409	ssh 130.73.232.102 -l $usern ". /usr/share/modules/init/bash; module load $mpilib; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2410	[[ ! -f a.out ]] && compile_error=true
2411	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2412	elif [[ $localhost = lcsgih ]]
2413	then
2414	printf " compiler is called via ssh on \"hicegate2\" using module \"$mpilib\" \n"
2415	ssh 130.75.4.103 -l $usern ". /usr/share/modules/init/bash; module load $mpilib; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2416	[[ ! -f a.out ]] && compile_error=true
2417	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2418	else
2419	[[ $localhost = lctit ]] && export LM_LICENSE_FILE=27050@tggls
2420	make -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2421	fi
2422
2423	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2424	then
2425	printf "\n +++ error occured while compiling or linking"
2426	locat=compile
2427
2428	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
2429	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
2430	# then
2431	exit
2432	# else
2433	# locat=normal
2434	# fi
2435	else
2436	printf "$striche\n *** compilation finished \n"
2437	fi
2438	fi
2439
2440
2441	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2442	if [[ $local_compile = true ]]
2443	then
2444	cd $HOME
2445	rm -rf $TEMPDIR
2446	locat=local_compile; exit
2447	fi
2448
2449
2450	# BEREITSTELLEN DER INPUT-DATEIEN
2451	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2452	(( i = 0 ))
2453	while (( i < iin ))
2454	do
2455	(( i = i + 1 ))
2456	if (( i == 1 ))
2457	then
2458	printf "\n\n *** providing INPUT-files:\n$striche"
2459	fi
2460
2461
2462	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2463	if [[ "${transin[$i]}" = unavailable ]]
2464	then
2465	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2466	then
2467	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2468	printf "\n is not available!"
2469	else
2470	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2471	printf "\n is not available!"
2472	fi
2473	continue
2474	fi
2475
2476	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2477	files_for_pes=false; datentyp=file
2478	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2479	then
2480	files_for_pes=true; datentyp=directory
2481	actionin[$i]=""
2482	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2483	then
2484	actionin[$i]=""
2485	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2486	then
2487	files_for_pes=true; datentyp=directory
2488	actionin[$i]="ar"
2489	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2490	then
2491	actionin[$i]="ar"
2492	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2493	then
2494	files_for_pes=true; datentyp=directory
2495	actionin[$i]="fl"
2496	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2497	then
2498	actionin[$i]="fl"
2499	fi
2500
2501	if [[ $files_for_pes = true ]]
2502	then
2503	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
2504	else
2505	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
2506	fi
2507
2508	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
2509	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
2510	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
2511	# SERVER ZU HOLEN
2512	if [[ "${actionin[$i]}" = fl ]]
2513	then
2514	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
2515	if [[ $files_for_pes = false ]]
2516	then
2517	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
2518	then
2519	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
2520	got_tmp[$i]=true
2521	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2522	then
2523	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2524	printf "\n *** trying to use backup copy in \"$WORK\" "
2525	cp $WORK/${frelin[$i]} ${localin[$i]}
2526	else
2527	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2528	printf "\n or \"$tmp_data_catalog\" does not exist!"
2529	printf "\n *** trying to get copy from archive"
2530	actionin[$i]=ar
2531	fi
2532	else
2533	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
2534	then
2535	mkdir ${localin[$i]}
2536	cd $tmp_data_catalog/${frelin[$i]}
2537	for file in $(ls *)
2538	do
2539	ln $file $TEMPDIR/${localin[$i]}
2540	done
2541	cd $TEMPDIR
2542	got_tmp[$i]=true
2543	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2544	then
2545	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2546	printf "\n *** trying to use backup copy in \"$WORK\" "
2547	cp -r $WORK/${frelin[$i]} ${localin[$i]}
2548	else
2549	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2550	printf "\n or \"$tmp_data_catalog\" does not exist!"
2551	printf "\n *** trying to get copy from archive"
2552	actionin[$i]=ar
2553	fi
2554	fi
2555	fi
2556
2557
2558	# DATEI LIEGT AUF ARCHIV-SERVER
2559	if [[ "${actionin[$i]}" = ar ]]
2560	then
2561
2562	if [[ $files_for_pes = false ]]
2563	then
2564	printf "\n file will be restored from archive-system ($archive_system)!"
2565	else
2566	printf "\n directory will be restored from archive-system ($archive_system)!"
2567	fi
2568
2569	file_restored=false
2570
2571	if [[ $archive_system = asterix ]]
2572	then
2573	do_stagein=true
2574	(( stagein_anz = 0 ))
2575	while [[ $do_stagein = true ]]
2576	do
2577	if [[ $files_for_pes = false ]]
2578	then
2579	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
2580	else
2581	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
2582	fi
2583	cat STAGEIN_OUTPUT
2584	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
2585	then
2586	file_restored=true
2587	do_stagein=false
2588	else
2589	(( stagein_anz = stagein_anz + 1 ))
2590	if (( stagein_anz == 10 ))
2591	then
2592	printf "\n +++ stagein stoped after 10 tries"
2593	locat=stage
2594	exit
2595	fi
2596	printf "\n +++ restoring from archive failed, trying again:"
2597	sleep 900
2598	fi
2599	done
2600	elif [[ $archive_system = DMF ]]
2601	then
2602	if [[ $files_for_pes = false ]]
2603	then
2604	printf "\n +++ restoring of single files impossible with $archive_system !\n"
2605	locat=DMF
2606	exit
2607	else
2608	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
2609	cp -r $ARCHIVE/${frelin[$i]} $PWD
2610	file_restored=true
2611	fi
2612	elif [[ $archive_system = tivoli ]]
2613	then
2614	if [[ $files_for_pes = false ]]
2615	then
2616	if [[ $localhost = ibmh ]]
2617	then
2618	ssh $usern@hdata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2619	else
2620	ssh $usern@bdata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2621	fi
2622	else
2623	(( inode = 0 ))
2624	while (( inode < nodes ))
2625	do
2626	if [[ $localhost = ibmh ]]
2627	then
2628	ssh $usern@hdata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2629	else
2630	ssh $usern@bdata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2631	fi
2632	(( inode = inode + 1 ))
2633	done
2634	fi
2635	file_restored=true
2636	elif [[ $archive_system = ut ]]
2637	then
2638	if [[ $files_for_pes = false ]]
2639	then
2640	cp $UT/${frelin[$i]} .
2641	else
2642	(( inode = 0 ))
2643	while (( inode < nodes ))
2644	do
2645	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
2646	(( inode = inode + 1 ))
2647	done
2648	fi
2649	file_restored=true
2650	else
2651	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
2652	locat=rearchive
2653	exit
2654	fi
2655
2656	if [[ $file_restored = true ]]
2657	then
2658
2659	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
2660	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
2661	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
2662	if [[ $files_for_pes = false ]]
2663	then
2664	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
2665	else
2666	mkdir $tmp_data_catalog/${frelin[$i]}
2667	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
2668	fi
2669	got_tmp[$i]=true
2670
2671	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
2672	mv ${frelin[$i]} ${localin[$i]}
2673
2674	fi
2675	fi
2676
2677
2678	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
2679	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
2680	then
2681
2682	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
2683	then
2684
2685	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
2686	printf "\n file will be provided for $numprocs processors"
2687	mkdir ${localin[$i]}
2688	ival=$numprocs
2689	(( ii = 0 ))
2690	while (( ii <= ival-1 ))
2691	do
2692	if (( ii < 10 ))
2693	then
2694	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
2695	elif (( ii < 100 ))
2696	then
2697	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
2698	elif (( ii < 1000 ))
2699	then
2700	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
2701	else
2702	cp ${absnamein[$i]} ${localin[$i]}/_$ii
2703	fi
2704	(( ii = ii + 1 ))
2705	done
2706
2707	else
2708
2709	if [[ $files_for_pes = true ]]
2710	then
2711
2712	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
2713	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
2714	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
2715	# PER MOVE UMBENANNT WERDEN
2716	printf "\n providing $numprocs files for the respective processors"
2717	mkdir ${localin[$i]}
2718	if [[ $link_local_input = true ]]
2719	then
2720	printf " using ln -f\n"
2721	cd ${absnamein[$i]}
2722	for file in $(ls *)
2723	do
2724	ln -f $file ${localin[$i]}
2725	done
2726	cd $TEMPDIR
2727	fi
2728	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
2729	if [[ ! -f "${localin[$i]}/_0000" ]]
2730	then
2731	if [[ $link_local_input = true ]]
2732	then
2733	printf " ln failed for .../_0000, using cp...\n"
2734	fi
2735	cp -r ${absnamein[$i]}/* ${localin[$i]}
2736	fi
2737
2738	else
2739	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
2740	if [[ $link_local_input = true ]]
2741	then
2742	printf " using ln -f\n"
2743	ln -f ${absnamein[$i]} ${localin[$i]}
2744	fi
2745	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
2746	if [[ ! -f "${localin[$i]}" ]]
2747	then
2748	if [[ $link_local_input = true ]]
2749	then
2750	printf " ln failed, using cp...\n"
2751	fi
2752	cp ${absnamein[$i]} ${localin[$i]}
2753	fi
2754	fi
2755	fi
2756	fi
2757
2758	done
2759	if (( i != 0 ))
2760	then
2761	printf "\n$striche\n *** all INPUT-files provided \n"
2762	fi
2763
2764
2765	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
2766	(( i = 0 ))
2767	while (( i < iic ))
2768	do
2769	(( i = i + 1 ))
2770	if (( i == 1 ))
2771	then
2772	printf "\n\n *** execution of INPUT-commands:\n$striche"
2773	fi
2774	printf "\n >>> ${in_command[$i]}"
2775	eval ${in_command[$i]}
2776	if (( i == iic ))
2777	then
2778	printf "\n$striche\n"
2779	fi
2780	done
2781
2782
2783	# VERBLEIBENDE CPU-ZEIT BERECHNEN
2784	cpurest=${cpumax}.
2785
2786
2787	# START DVR STREAMING SERVER
2788	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
2789	then
2790	if [[ "$dvr_server" != "" ]]
2791	then
2792
2793	printf "\n\n *** preparing the dvr streaming server configuration file"
2794
2795	# Check, if a dvr server is already running
2796	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
2797	if [[ "$running_dvrserver_id" != "" ]]
2798	then
2799
2800	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
2801	printf "\n This server is used instead starting a new one!"
2802	printf "\n If required, script \"process_dvr_output\" has to be run manually."
2803
2804	else
2805
2806	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
2807	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
2808	then
2809	cp ${PALM_BIN}/.dvrserver.config .
2810
2811	# Entering the BASEDIR, UID and GID into this file
2812	user_id=`id -u`
2813	group_id=`id -g`
2814	# & is needed as seperator, because TEMPDIR contains /
2815	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
2816	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
2817	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
2818	mv .dvrserver.3 .dvrserver.config
2819	rm .dvrserver.1 .dvrserver.2
2820
2821	# Start dvr server in background, get his id and print on terminal
2822	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
2823	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
2824	printf "\n *** streaming server with id=$dvrserver_id is started in background"
2825	local_dvrserver_running=.TRUE.
2826	else
2827	printf "\n +++ missing file \".dvrserver.config\" in directory:"
2828	printf "\n \"$PALM_BIN\" "
2829	locat=dvr
2830	exit
2831	fi
2832
2833	fi
2834
2835	else
2836	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
2837	fi
2838	fi
2839
2840
2841	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
2842	# LESEN VON PALM)
2843	cat > ENVPAR << %%END%%
2844	&envpar run_identifier = '$fname', host = '$localhost',
2845	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2846	maximum_cpu_time_allowed = ${cpumax}.,
2847	revision = '$global_revision',
2848	local_dvrserver_running = $local_dvrserver_running /
2849
2850	%%END%%
2851
2852
2853	# PROGRAMMSTART
2854	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
2855	PATH=$PATH:$TEMPDIR
2856
2857	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
2858	then
2859	if [[ "$ENVIRONMENT" = BATCH ]]
2860	then
2861	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
2862	then
2863	printf "\n +++ debug is allowed in interactive mode only"
2864	locat=debug
2865	exit
2866	fi
2867	fi
2868	if [[ $localhost = decalpha ]]
2869	then
2870	dxladebug a.out
2871	elif [[ $localhost = ibmb \|\| $localhost = ibmh ]]
2872	then
2873
2874	# SETUP THE IBM MPI ENVIRONMENT
2875	export MP_SHARED_MEMORY=yes
2876	export AIXTHREADS_SCOPE=S
2877	export OMP_NUM_THREADS=$threads_per_task
2878	export AUTHSTATE=files
2879	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
2880
2881	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
2882	export MP_ADAPTER_USE=shared
2883	export MP_CPU_USE=multiple
2884	export MP_TIMEOUT=1200
2885
2886	unset MP_TASK_AFFINITY
2887
2888	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
2889	#(( ii = 1 ))
2890	#while (( ii <= $numprocs ))
2891	#do
2892	# echo $localhost_realname >> hostfile
2893	# (( ii = ii + 1 ))
2894	#done
2895	#export MP_HOSTFILE=hostfile
2896
2897	if [[ "$LOADLBATCH" = yes ]]
2898	then
2899	totalview poe a.out $ROPTS
2900	else
2901	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
2902	export TVDSVRLAUNCHCMD=ssh
2903	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
2904	fi
2905	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
2906	then
2907	# CURRENTLY NO DEBUGGER ON LCSGI
2908	if [[ $run_coupled_model = true ]]
2909	then
2910	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
2911	locat=debug
2912	exit
2913	else
2914	echo "no_coupling" > runfile_atmos
2915	fi
2916	(( ii = $numprocs / $threads_per_task ))
2917	export OMP_NUM_THREADS=$threads_per_task
2918	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
2919	if [[ $threads_per_task != 1 ]]
2920	then
2921	printf "\n threads per task: $threads_per_task"
2922	fi
2923	printf "\n\n"
2924	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
2925	then
2926	# export MPI_LAUNCH_TIMEOUT=360
2927	if [[ "$totalview" = true ]]
2928	then
2929	printf "\n running totalview debugger"
2930	mpiexec_mpt -tv -n $ii ./a.out $ROPTS < runfile_atmos
2931	else
2932	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
2933	fi
2934	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
2935	then
2936	# ulimit -s 300000 # A too large stack size causes problems
2937	# export MV2_NUM_PORTS=2
2938	# export MV2_CPU_MAPPING=0:1:2:3
2939	mpiexec ./a.out $ROPTS < runfile_atmos
2940	fi
2941	else
2942	printf "\n +++ no debug available on \"$localhost\" "
2943	printf "\n or not implemented in mrun so far"
2944	locat=debug
2945	exit
2946	fi
2947	else
2948	if [[ -n $numprocs ]]
2949	then
2950
2951	# RUNNING THE PROGRAM ON PARALLEL MACHINES
2952	if [[ $(echo $host \| cut -c1-3) = ibm ]]
2953	then
2954	# SETUP THE IBM MPI ENVIRONMENT
2955	export MP_SHARED_MEMORY=yes
2956	export AIXTHREAD_SCOPE=S
2957	export OMP_NUM_THREADS=$threads_per_task
2958	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
2959	export AUTHSTATE=files
2960	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
2961	# export MP_PRINTENV=yes
2962
2963	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
2964	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
2965	export MP_WAIT_MODE=poll
2966	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
2967	# export MP_EAGER_LIMIT=65535
2968
2969	# # TESTWEISE FUER TURBOMPI (JAN 05)
2970	# export MPJ_MTAB=128
2971	# export MPJ_ALLTOALL=1
2972	# export MPJ_ALLTOALLV=1
2973
2974	if [[ "$LOADLBATCH" = yes ]]
2975	then
2976	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
2977	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
2978	then
2979	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
2980	else
2981	poe ./a.out $ROPTS
2982	fi
2983	else
2984	if [[ $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms ]]
2985	then
2986	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
2987	elif [[ $localhost = ibmy ]]
2988	then
2989	if [[ -f $hostfile ]]
2990	then
2991	cp $hostfile hostfile
2992	else
2993	(( ii = 1 ))
2994	while (( ii <= $numprocs ))
2995	do
2996	echo $localhost_realname >> hostfile
2997	(( ii = ii + 1 ))
2998	done
2999	fi
3000	export MP_HOSTFILE=hostfile
3001	./a.out -procs $tasks_per_node $ROPTS
3002	else
3003	if [[ "$host_file" = "" ]]
3004	then
3005	printf "\n +++ no hostfile given in configuration file"
3006	locat=config_file
3007	exit
3008	else
3009	eval host_file=$host_file
3010	fi
3011	export MP_HOSTFILE=$host_file
3012	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3013	fi
3014	fi
3015	elif [[ $host = nech \|\| $host = necriam ]]
3016	then
3017	(( ii = nodes ))
3018	if [[ $ii = 1 ]]
3019	then
3020	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3021	export MPIPROGINF=YES
3022	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3023	echo "*** execution on single node with mpirun"
3024	mpirun -np $numprocs ./a.out $ROPTS
3025	else
3026	(( i = 0 ))
3027	while (( i < ii ))
3028	do
3029	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3030	(( i = i + 1 ))
3031	done
3032
3033	echo "#!/bin/sh" > mpi_exec_shell
3034	echo " " >> mpi_exec_shell
3035	echo "set -u" >> mpi_exec_shell
3036	echo "F_ERRCNT=0" >> mpi_exec_shell
3037	echo "MPIPROGINV=YES" >> mpi_exec_shell
3038	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3039	echo "cpurest=$cpurest" >> mpi_exec_shell
3040	echo "fname=$fname" >> mpi_exec_shell
3041	echo "localhost=$localhost" >> mpi_exec_shell
3042	echo "return_addres=$return_addres" >> mpi_exec_shell
3043	echo "return_username=$return_username" >> mpi_exec_shell
3044	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3045	echo "write_binary=$write_binary" >> mpi_exec_shell
3046	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3047	echo " " >> mpi_exec_shell
3048	echo "export F_ERRCNT" >> mpi_exec_shell
3049	echo "export MPIPROGINV" >> mpi_exec_shell
3050	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3051	echo "export cpurest" >> mpi_exec_shell
3052	echo "export fname" >> mpi_exec_shell
3053	echo "export localhost" >> mpi_exec_shell
3054	echo "export return_addres" >> mpi_exec_shell
3055	echo "export return_username" >> mpi_exec_shell
3056	echo "export tasks_per_node" >> mpi_exec_shell
3057	echo "export write_binary" >> mpi_exec_shell
3058	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3059	echo " " >> mpi_exec_shell
3060	echo "exec ./a.out" >> mpi_exec_shell
3061
3062	chmod u+x mpi_exec_shell
3063	export MPIPROGINF=YES
3064	mpirun -f multinode_config &
3065	wait
3066
3067	fi
3068	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lctit ]]
3069	then
3070
3071	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3072	# DOES NOT EXIST
3073	if [[ $host != lcsgih && $host != lcsgib ]]
3074	then
3075	if [[ -f $hostfile ]]
3076	then
3077	cp $hostfile hostfile
3078	else
3079	(( ii = 1 ))
3080	while (( ii <= $numprocs / $threads_per_task ))
3081	do
3082	echo $localhost_realname >> hostfile
3083	(( ii = ii + 1 ))
3084	done
3085	fi
3086	eval zeile=\"`head -n $ii hostfile`\"
3087	printf "\n *** running on: $zeile"
3088	fi
3089
3090	(( ii = $numprocs / $threads_per_task ))
3091	export OMP_NUM_THREADS=$threads_per_task
3092	# echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3093	if [[ $threads_per_task != 1 ]]
3094	then
3095	printf "\n threads per task: $threads_per_task"
3096	fi
3097	if [[ $run_coupled_model = false ]]
3098	then
3099	echo "no_coupling" > runfile_atmos
3100	printf "\n\n"
3101	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3102	then
3103	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3104	then
3105	# export MPI_LAUNCH_TIMEOUT=360
3106	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3107	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3108	then
3109	# ulimit -s 300000 # A too large stack size causes problems
3110	# export MV2_NUM_PORTS=2
3111	# export MV2_CPU_MAPPING=0:1:2:3
3112	mpiexec ./a.out $ROPTS < runfile_atmos
3113	fi
3114	elif [[ $host = lcxt4 ]]
3115	then
3116	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3117	else
3118	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3119	fi
3120	else
3121
3122	# currently there is no full MPI-2 support on ICE and XT4
3123	(( iia = $numprocs_atmos / $threads_per_task ))
3124	(( iio = $numprocs_ocean / $threads_per_task ))
3125	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3126	printf "\n using $coupled_mode coupling"
3127	printf "\n\n"
3128
3129	if [[ $coupled_mode = "mpi2" ]]
3130	then
3131	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3132	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3133	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3134	then
3135
3136	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3137	then
3138	# export MPI_LAUNCH_TIMEOUT=360
3139	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3140	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3141	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3142	then
3143	# ulimit -s 300000 # A too large stack size causes problems
3144	# export MV2_NUM_PORTS=2
3145	# export MV2_CPU_MAPPING=0:1:2:3
3146	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3147	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3148	fi
3149
3150	elif [[ $host = lcxt4 ]]
3151	then
3152
3153	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3154	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3155
3156	else
3157	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3158	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3159	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3160	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3161	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3162	fi
3163	wait
3164
3165	else
3166
3167	echo "coupled_run $iia $iio" > runfile_atmos
3168	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3169	then
3170
3171	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3172	then
3173	# export MPI_LAUNCH_TIMEOUT=360
3174	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3175	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3176	then
3177	# ulimit -s 300000 # A too large stack size causes problems
3178	# export MV2_NUM_PORTS=2
3179	# export MV2_CPU_MAPPING=0:1:2:3
3180	mpiexec ./a.out $ROPTS < runfile_atmos
3181	fi
3182
3183	elif [[ $host = lcxt4 ]]
3184	then
3185
3186	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3187
3188	fi
3189	wait
3190	fi
3191
3192	# if [[ $scirocco = true ]]
3193	# then
3194	# mpiexec -machinefile hostfile -n $ii a.out $ROPTS
3195	# else
3196	# mpirun -machinefile hostfile -np $ii a.out $ROPTS
3197	# fi
3198	fi
3199	elif [[ $host = decalpha ]]
3200	then
3201	dmpirun -np $numprocs a.out $ROPTS
3202	elif [[ $host = lctit ]]
3203	then
3204	export runfile=runfile.$kennung
3205
3206	echo "cd $PWD" > $runfile
3207	echo "export OMP_NUM_THREADS=$OMP_NUM_THREADS" >> $runfile
3208	echo "export cpurest=$cpurest" >> $runfile
3209	echo "export fname=$fname" >> $runfile
3210	echo "export localhost=$localhost" >> $runfile
3211	echo "export return_addres=$return_addres" >> $runfile
3212	echo "export return_username=$return_username" >> $runfile
3213	echo "export tasks_per_node=$tasks_per_node" >> $runfile
3214	echo "export write_binary=$write_binary" >> $runfile
3215	echo "export use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> $runfile
3216	echo "./a.out" >> $runfile
3217	chmod u+x $runfile
3218
3219	if [[ "$QUEUE" = interactive ]]
3220	then
3221	mpirun -np $numprocs a.out $ROPTS
3222	else
3223	(( mem_tsubame = $memory / 1024.0 ))
3224	echo "Memory for Tsubame for each process in GB:", $mem_tsubame
3225	# n1ge -fore -g 1S060156 -mpi $numprocs -mem 4 -N palm -q $queue a.out $ROPTS
3226	# /n1ge/TITECH_GRID/tools/bin/n1ge -fore -g $group_number -mpi ${numprocs}:$tasks_per_node -mem $mem_tsubame -N palm -rt $minuten -q $queue a.out $ROPTS
3227	n1ge -fore -g $group_number -mpi ${numprocs}:$tasks_per_node -mem $mem_tsubame -N palm -rt $minuten -q $queue a.out $ROPTS
3228	fi
3229
3230	rm $runfile
3231	else
3232	mpprun -n $numprocs a.out $ROPTS
3233	fi
3234	[[ $? != 0 ]] && execution_error=true
3235
3236
3237	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3238	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3239	then
3240	apprentice
3241	fi
3242	else
3243	a.out $ROPTS
3244	fi
3245	fi
3246	if [[ $? != 0 \|\| $execution_error = true ]]
3247	then
3248
3249	# ABBRUCH BEI LAUFZEITFEHLER
3250	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3251	printf "\n +++ runtime error occured"
3252	locat=execution
3253	exit
3254	else
3255	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3256	printf "\n$striche\n *** execution finished \n"
3257
3258	# Stop the dvr streaming server and process the dvr output in order
3259	# to create dvrs- and html-files containing all streams
3260	if [[ "$dvrserver_id" != "" ]]
3261	then
3262	kill $dvrserver_id
3263	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3264
3265	# If there is a directory, data have been output by the
3266	# streaming server. Otherwise, user has chosen dvrp_output=local
3267	if [[ -d DATA_DVR ]]
3268	then
3269
3270	# Add the current dvr configuration file to the dvr output
3271	# directory
3272	cp .dvrserver.config DATA_DVR
3273
3274	# Process the dvr output (option -s for also generating
3275	# sequence mode data)
3276	process_dvr_output -d DATA_DVR -f $fname -s
3277
3278	else
3279
3280	# Process the local output
3281	process_dvr_output -l -d DATA_DVR -f $fname
3282
3283	fi
3284
3285	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3286	then
3287
3288	# Process dvr output generated in local mode (dvrp_output=local)
3289	process_dvr_output -l -d DATA_DVR -f $fname
3290
3291	fi
3292	fi
3293
3294
3295
3296	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3297	(( i = 0 ))
3298	while (( i < ioc ))
3299	do
3300	(( i = i + 1 ))
3301	if (( i == 1 ))
3302	then
3303	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
3304	fi
3305	printf "\n >>> ${out_command[$i]}"
3306	eval ${out_command[$i]}
3307	if (( i == ioc ))
3308	then
3309	printf "\n$striche\n"
3310	fi
3311	done
3312
3313
3314	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
3315	if [[ $do_trace = true ]]
3316	then
3317	printf "\n\n"
3318	ls -al
3319	fi
3320
3321
3322
3323	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
3324	(( i = 0 ))
3325	while (( i < iout ))
3326	do
3327	(( i = i + 1 ))
3328	if (( i == 1 ))
3329	then
3330	printf "\n\n *** saving OUTPUT-files:\n$striche"
3331	fi
3332
3333	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3334	files_for_pes=false; filetyp=file
3335	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
3336	then
3337	files_for_pes=true; filetyp=directory
3338	actionout[$i]=""
3339	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
3340	then
3341	actionout[$i]=""
3342	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
3343	then
3344	files_for_pes=true; filetyp=directory
3345	actionout[$i]="ar"
3346	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
3347	then
3348	actionout[$i]="ar"
3349	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
3350	then
3351	files_for_pes=true; filetyp=directory
3352	actionout[$i]="fl"
3353	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
3354	then
3355	actionout[$i]="fl"
3356	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
3357	then
3358	files_for_pes=true; filetyp=directory
3359	actionout[$i]="tr"
3360	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
3361	then
3362	actionout[$i]="tr"
3363	fi
3364
3365	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
3366	then
3367	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
3368	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
3369	then
3370	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
3371	else
3372
3373
3374	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3375	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3376	# REMOTE-RECHNUNGEN
3377	if [[ "${actionout[$i]}" = tr ]]
3378	then
3379	if [[ $localhost != $fromhost ]]
3380	then
3381	if [[ $files_for_pes = false ]]
3382	then
3383	cps=""
3384	cst=""
3385	else
3386	cps=-c
3387	cst="/"
3388	fi
3389	if [[ $localhost = ibmh \|\| $localhost = ibmb \|\| $localhost = nech ]]
3390	then
3391
3392	# TRANSFER IN EIGENSTAENDIGEM JOB
3393	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3394	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3395	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3396	if [[ $files_for_pes = false ]]
3397	then
3398	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3399	else
3400	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
3401	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
3402	fi
3403
3404	echo "set -x" > transfer_${localout[$i]}
3405	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3406
3407	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
3408	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
3409	printf "\n or higher cycle\n"
3410	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3411
3412	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3413
3414	if [[ $localhost = nech ]]
3415	then
3416	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3417	else
3418	if [[ "$LOGNAME" = b323013 ]]
3419	then
3420	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3421	else
3422	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3423	fi
3424	fi
3425
3426	else
3427
3428	# TRANSFER INNERHALB DIESES JOBS
3429	transfer_failed=false
3430	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
3431	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
3432	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3433	[[ $? != 0 ]] && transfer_failed=true
3434
3435	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3436	# LOKALER MASCHINE ANLEGEN
3437	if [[ $transfer_failed = true ]]
3438	then
3439	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3440	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3441
3442	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3443	# ANLEGEN.
3444	eval local_catalog=${pathout[$i]}
3445	if [[ ! -d $local_catalog ]]
3446	then
3447	printf " *** local directory does not exist. Trying to create:\n"
3448	printf " $local_catalog \n"
3449	mkdir -p $local_catalog
3450	fi
3451	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3452	transfer_problems=true
3453	fi
3454	fi
3455	else
3456
3457	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
3458	actionout[$i]=""
3459	fi
3460	fi
3461
3462
3463	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3464	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3465	# REMOTE-RECHNUNGEN
3466	if [[ "${actionout[$i]}" = tra ]]
3467	then
3468	if [[ $localhost != $fromhost ]]
3469	then
3470	if [[ $localhost = ibmh \|\| $localhost = ibmb \|\| $localhost = nech ]]
3471	then
3472
3473	# TRANSFER IN EIGENSTAENDIGEM JOB
3474	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3475	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3476	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3477	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3478
3479	echo "set -x" > transfer_${localout[$i]}
3480	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3481
3482	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
3483	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
3484	printf "\n or higher cycle\n"
3485	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3486
3487	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3488
3489	if [[ $localhost = nech ]]
3490	then
3491	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3492	else
3493	if [[ $LOGNAME = b323013 ]]
3494	then
3495	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3496	else
3497	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3498	fi
3499	fi
3500
3501	else
3502
3503	# TRANSFER INNERHALB DIESES JOBS
3504	transfer_failed=false
3505	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
3506	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
3507	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3508	[[ $? != 0 ]] && transfer_failed=true
3509
3510	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3511	# LOKALER MASCHINE ANLEGEN
3512	if [[ $transfer_failed = true ]]
3513	then
3514	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3515	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3516
3517	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3518	# ANLEGEN
3519	eval local_catalog=${pathout[$i]}
3520	if [[ ! -d $local_catalog ]]
3521	then
3522	printf " *** local directory does not exist. Trying to create:\n"
3523	printf " $local_catalog \n"
3524	mkdir -p $local_catalog
3525	fi
3526
3527	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3528	transfer_problems=true
3529	fi
3530	fi
3531	else
3532
3533	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
3534	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
3535	actionout[$i]=a
3536	fi
3537	fi
3538
3539
3540	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
3541	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
3542	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
3543	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
3544	if [[ "${actionout[$i]}" = fl ]]
3545	then
3546	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3547	chmod g+rx $tmp_data_catalog
3548	if [[ $files_for_pes = false ]]
3549	then
3550	printf "\n >>> OUTPUT: ${localout[$i]} to"
3551	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3552	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
3553	else
3554	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
3555	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3556	mkdir $tmp_data_catalog/${frelout[$i]}
3557	cd ${localout[$i]}
3558	for file in $(ls *)
3559	do
3560	ln -f $file $tmp_data_catalog/${frelout[$i]}
3561	done
3562	cd $TEMPDIR
3563	fi
3564
3565
3566	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
3567	if [[ $store_on_archive_system = true ]]
3568	then
3569
3570	if [[ $archive_system = asterix ]]
3571	then
3572	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3573	if [[ $files_for_pes = false ]]
3574	then
3575	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3576	else
3577	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3578	fi
3579	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3580	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
3581	echo "then" >> archive_${frelout[$i]}
3582	echo " do_stageout=false" >> archive_${frelout[$i]}
3583	echo "else" >> archive_${frelout[$i]}
3584	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
3585	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
3586	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
3587	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
3588	if [[ $files_for_pes = false ]]
3589	then
3590	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
3591	else
3592	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
3593	fi
3594	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
3595	echo "fi" >> archive_${frelout[$i]}
3596	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3597	elif [[ $archive_system = DMF ]]
3598	then
3599	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3600	if [[ $files_for_pes = false ]]
3601	then
3602	printf "\n +++ archiving of single files impossible with $archive_system !\n"
3603	locat=DMF
3604	exit
3605	else
3606	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
3607	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
3608	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
3609	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
3610	fi
3611	elif [[ $archive_system = tivoli ]]
3612	then
3613	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3614	if [[ $files_for_pes = false ]]
3615	then
3616	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3617	echo "set -x" >> archive_${frelout[$i]}
3618	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3619	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3620	else
3621
3622	echo "set -x" >> archive_${frelout[$i]}
3623	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
3624	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3625	cd $tmp_data_catalog
3626	all_files=`ls -1 ${frelout[$i]}/*`
3627	cd - > /dev/null
3628	(( inode = 0 ))
3629	(( tp1 = tasks_per_node + 1 ))
3630	while (( inode < nodes ))
3631	do
3632	# echo "*** all_files = \"$all_files\" "
3633	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3634	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3635	# echo "*** tasks_per_node = \"$tasks_per_node\" "
3636	# echo "*** files = \"$files\" "
3637	# echo "*** all_files = \"$all_files\" "
3638	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3639	echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3640	echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3641	(( inode = inode + 1 ))
3642	done
3643	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3644	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3645	fi
3646	elif [[ $archive_system = ut ]]
3647	then
3648	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3649	if [[ $files_for_pes = false ]]
3650	then
3651	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3652	echo "set -x" >> archive_${frelout[$i]}
3653	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3654	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3655	else
3656
3657	echo "set -x" >> archive_${frelout[$i]}
3658	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
3659	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
3660	cd $tmp_data_catalog
3661	all_files=`ls -1 ${frelout[$i]}/*`
3662	cd - > /dev/null
3663	(( inode = 0 ))
3664	(( tp1 = tasks_per_node + 1 ))
3665	while (( inode < nodes ))
3666	do
3667	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3668	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3669	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3670	(( inode = inode + 1 ))
3671	done
3672	fi
3673	elif [[ $archive_system = none ]]
3674	then
3675	printf " +++ archiving on $localhost not available!\n"
3676	fi
3677
3678	if [[ $archive_system != none ]]
3679	then
3680	if [[ $localhost = ibmh \|\| $localhost = ibmb ]]
3681	then
3682	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
3683	subjob -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
3684	elif [[ $localhost = nech ]]
3685	then
3686	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
3687	fi
3688	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3689	fi
3690	else
3691	printf " +++ caution: option -A is switched on. No archiving on $archive_system!\n"
3692	fi
3693
3694
3695	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
3696	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
3697	if [[ $files_for_pes = false ]]
3698	then
3699	cat /dev/null > ${pathout[$i]}
3700	else
3701	mkdir -p ${pathout[$i]}
3702	fi
3703
3704	fi
3705
3706
3707	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
3708	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
3709	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
3710	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
3711	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
3712	# GEMAESSEN ARCHIVIERUNGEN GESETZT
3713	if [[ "${actionout[$i]}" = ar ]]
3714	then
3715	if [[ $files_for_pes = false ]]
3716	then
3717	printf "\n >>> OUTPUT: ${localout[$i]} to"
3718	printf "\n ${pathout[$i]}"
3719	printf "\n File will be copied to archive-system ($archive_system) !\n"
3720	else
3721	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
3722	printf "\n ${pathout[$i]}"
3723	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
3724	fi
3725	mv ${localout[$i]} ${frelout[$i]}
3726
3727	file_saved=false
3728
3729	if [[ $archive_system = asterix ]]
3730	then
3731	do_stageout=true
3732	(( stageout_anz = 0 ))
3733	while [[ $do_stageout = true ]]
3734	do
3735	if [[ $files_for_pes = false ]]
3736	then
3737	stageout ${frelout[$i]} > STAGE_OUTPUT
3738	else
3739	stageout -t ${frelout[$i]} > STAGE_OUTPUT
3740	fi
3741	cat STAGE_OUTPUT
3742	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
3743	then
3744	file_saved=true
3745	do_stageout=false
3746	else
3747	if [[ $files_for_pes = false ]]
3748	then
3749	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
3750	else
3751	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
3752	fi
3753	(( stageout_anz = stageout_anz + 1 ))
3754	if (( stageout_anz == 10 ))
3755	then
3756	printf "\n +++ stoped after 10 unsuccessful tries!"
3757	archive_save=false
3758	do_stageout=false
3759	else
3760	printf "\n *** new try to store on archive after 15 min:"
3761	sleep 900
3762	fi
3763	fi
3764	done
3765	elif [[ $archive_system = DMF ]]
3766	then
3767	if [[ $files_for_pes = false ]]
3768	then
3769	printf "\n +++ archiving of single files impossible on $archive_system!\n"
3770	locat=DMF
3771	exit
3772	else
3773	rm -rf $ARCHIVE/${frelout[$i]}
3774	cp -r ${frelout[$i]} $ARCHIVE
3775	fi
3776	file_saved=true
3777	elif [[ $archive_system = tivoli ]]
3778	then
3779	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
3780	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
3781	# GELEGT WERDEN
3782	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3783	chmod g+rx $tmp_data_catalog
3784	if [[ $files_for_pes = false ]]
3785	then
3786	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
3787	else
3788	mkdir $tmp_data_catalog/${frelout[$i]}
3789	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
3790	fi
3791
3792	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
3793	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
3794	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
3795	if [[ $files_for_pes = false ]]
3796	then
3797	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3798	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3799	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3800	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3801	else
3802	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3803	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3804	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3805	fi
3806
3807	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
3808	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3809	file_saved=true
3810
3811	elif [[ $archive_system = ut ]]
3812	then
3813	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
3814	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
3815	# GELEGT WERDEN
3816	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3817	chmod g+rx $tmp_data_catalog
3818	if [[ $files_for_pes = false ]]
3819	then
3820	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
3821	else
3822	mkdir $tmp_data_catalog/${frelout[$i]}
3823	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
3824	fi
3825
3826	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
3827	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
3828	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
3829	if [[ $files_for_pes = false ]]
3830	then
3831	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3832	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3833	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3834	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3835	else
3836	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3837	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3838	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3839	fi
3840
3841	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
3842	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3843	file_saved=true
3844
3845	else
3846	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
3847	archive_save=false
3848	fi
3849	if [[ $file_saved = true ]]
3850	then
3851	if [[ $files_for_pes = false ]]
3852	then
3853	cat /dev/null > ${pathout[$i]}
3854	else
3855	mkdir -p ${pathout[$i]}
3856	fi
3857	fi
3858	fi
3859
3860	# APPEND AUF LOKALER MASCHINE
3861	if [[ "${actionout[$i]}" = "a" ]]
3862	then
3863	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
3864	cat ${localout[$i]} >> ${pathout[$i]}
3865	fi
3866
3867	# KOPIEREN AUF LOKALER MASCHINE
3868	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
3869	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
3870	then
3871
3872	# KOPIEREN AUF EINPROZESSORMASCHINE
3873	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
3874	then
3875	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
3876	if [[ $link_local_output = true ]]
3877	then
3878	printf " using ln -f\n"
3879	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
3880	fi
3881	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
3882	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
3883	then
3884	if [[ $link_local_output = true ]]
3885	then
3886	printf " ln failed, using cp...\n"
3887	fi
3888	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
3889	fi
3890	else
3891	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
3892	if [[ $link_local_output = true ]]
3893	then
3894	printf " using ln -f\n"
3895	ln -f ${localout[$i]} ${pathout[$i]}
3896	fi
3897	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
3898	if [[ ! -f "${pathout[$i]}" ]]
3899	then
3900	if [[ $link_local_output = true ]]
3901	then
3902	printf " ln failed, using cp...\n"
3903	fi
3904	cp ${localout[$i]} ${pathout[$i]}
3905	fi
3906	fi
3907
3908	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
3909	then
3910
3911	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
3912	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
3913	# WIRD DANN KOPIERT
3914	# PER MOVE UMBENANNT WERDEN
3915	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
3916	if [[ $link_local_output = true ]]
3917	then
3918	printf " using ln -f\n"
3919	mkdir ${pathout[$i]}
3920	cd ${localout[$i]}
3921	for file in $(ls *)
3922	do
3923	ln -f $file ${pathout[$i]}
3924	done
3925	cd $TEMPDIR
3926	fi
3927	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
3928	if [[ ! -f "${pathout[$i]}/_0000" ]]
3929	then
3930	if [[ $link_local_output = true ]]
3931	then
3932	printf " ln failed for .../_0000, using cp...\n"
3933	fi
3934	cp -r ${localout[$i]} ${pathout[$i]}
3935	fi
3936
3937	fi
3938	fi
3939	done
3940	if (( i != 0 ))
3941	then
3942	if [[ $transfer_problems = true ]]
3943	then
3944	printf "\n$striche\n *** OUTPUT-files saved"
3945	printf "\n +++ WARNING: some data transfers failed! \n"
3946	else
3947	printf "\n$striche\n *** all OUTPUT-files saved \n"
3948	fi
3949	fi
3950
3951
3952	# EVENTUELL FOLGEJOB STARTEN
3953	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
3954	if [[ -f CONTINUE_RUN ]]
3955	then
3956
3957	if [[ $archive_save = true ]]
3958	then
3959
3960	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
3961	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
3962	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
3963	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
3964	# HANDEN
3965	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
3966	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
3967	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
3968	if [[ $(echo $mc \| grep -c "#") != 0 ]]
3969	then
3970	mc=`echo $mc \| sed 's/#/f/g'`
3971	fi
3972
3973
3974	# JOB STARTEN
3975	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
3976	echo " $mc"
3977	printf "\n$striche\n"
3978	if [[ $localhost != $fromhost ]]
3979	then
3980
3981	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms \|\| $localhost = lctit ]]
3982	then
3983	echo "*** ssh will be used to initiate restart-runs!"
3984	echo " return_addres=\"$return_addres\" "
3985	echo " return_username=\"$return_username\" "
3986	if [[ $return_addres = 172.20.25.41 ]]
3987	then
3988	# WORKAROUND AUF SCIROCCO AM TIT
3989	print "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc " \| ssh $return_addres -l $return_username
3990	else
3991	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
3992	fi
3993	else
3994	printf "\n +++ no restart mechanism available for host \"$localhost\" "
3995	locat=restart; exit
3996	fi
3997
3998	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
3999	# DER AKTUELLE JOB ENDET
4000	sleep 30
4001
4002	else
4003
4004	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4005	# RUFEN WERDEN, AUSSER AUF lcfimm
4006	cd $LOCAL_PWD
4007	if [[ $localhost = lcfimm ]]
4008	then
4009	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4010	else
4011	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4012	fi
4013	cd - > /dev/null
4014	fi
4015	printf "\n$striche\n *** restart-run initiated \n"
4016
4017
4018	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4019	# GEHOLT WORDEN SIND, LOESCHEN
4020	(( i = 0 ))
4021	while (( i < iin ))
4022	do
4023	(( i = i + 1 ))
4024	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4025	then
4026	rm -r $tmp_data_catalog/${frelin[$i]}
4027	fi
4028	done
4029
4030	else
4031
4032	printf "\n +++ no restart-run possible, since errors occured"
4033	printf "\n during the archive process"
4034	fi
4035
4036	fi
4037
4038
4039
4040	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4041	if [[ "$email_notification" != "" ]]
4042	then
4043
4044	if [[ $localhost != $fromhost ]]
4045	then
4046	if [[ -f CONTINUE_RUN ]]
4047	then
4048	echo "PALM restart run necessary" > email_text
4049	echo "description header of actual run:" >> email_text
4050	cat CONTINUE_RUN >> email_text
4051	echo "mrun-command to restart:" >> email_text
4052	echo "$mc" >> email_text
4053	else
4054	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4055	fi
4056	mail $email_notification < email_text
4057	printf "\n *** email notification sent to \"$email_notification\" "
4058	fi
4059	fi
4060
4061
4062
4063	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4064	cd $HOME
4065	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4066
4067	else
4068
4069
4070	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4071	# CHENDE AKTIONEN DURCHGEFUEHRT
4072
4073	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4074	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
4075	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4076	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4077	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4078	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4079	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4080	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4081	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4082	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4083	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4084	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4085	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4086	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4087	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4088	if [[ $use_openmp = true ]]
4089	then
4090	mrun_com=${mrun_com}" -O"
4091	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $threads_per_task"
4092	else
4093	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4094	fi
4095	[[ $store_on_archive_system = false ]] && mrun_com=${mrun_com}" -A"
4096	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4097	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4098	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4099	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4100	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4101	if [[ $do_remote = true ]]
4102	then
4103	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4104	fi
4105
4106
4107	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4108	jobfile=jobfile.$RANDOM
4109
4110
4111	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4112	echo "mkdir $TEMPDIR" >> $jobfile
4113	echo "cd $TEMPDIR" >> $jobfile
4114
4115
4116	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4117	if [[ $do_trace = true ]]
4118	then
4119	echo "set -x" >> $jobfile
4120	else
4121	echo "set +vx" >> $jobfile
4122	fi
4123
4124
4125	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4126	# DATEI FUER DEN JOB
4127	if [[ $( echo $host \| cut -c1-5 ) = lcsgi ]]
4128	then
4129
4130	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4131	# KOPIEREN
4132	if [[ $restart_run != true ]]
4133	then
4134	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4135	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4136	fi
4137
4138	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4139	echo "set -x" >> $jobfile
4140	echo "scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4141	echo "export SOURCES_COMPLETE=true" >> $jobfile
4142
4143	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4144	# ARBEITSVERZEICHNIS VERSCHIEBEN
4145	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4146	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4147	echo "execute_mrun=true" >> $jobfile
4148	echo " " >> $jobfile
4149
4150	else
4151
4152	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4153	# SOWIE GEGEBENENFALLS DES MAKEFILES
4154	if [[ $do_compile = true ]]
4155	then
4156
4157	source_catalog=SOURCES_FOR_RUN_$fname
4158
4159	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4160	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4161	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4162	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4163	echo "export SOURCES_COMPLETE=true" >> $jobfile
4164	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4165
4166	for filename in $source_list
4167	do
4168	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4169	echo "cat > $filename << \"%END%\"" >> $jobfile
4170	cat $source_catalog/$filename >> $jobfile
4171	echo " " >> $jobfile
4172	echo "%END%" >> $jobfile
4173	echo " " >> $jobfile
4174	done
4175
4176	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4177	echo "cat > Makefile << \"%END%\"" >> $jobfile
4178	cat $source_catalog/Makefile >> $jobfile
4179	echo " " >> $jobfile
4180	echo "%END%" >> $jobfile
4181	echo " " >> $jobfile
4182
4183	echo "cd - > /dev/null" >> $jobfile
4184
4185	fi
4186
4187
4188	# ABSPEICHERN DER KONFIGURATIONSDATEI
4189	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4190	echo "cat > $config_file << \"%END%\"" >> $jobfile
4191	cat $config_file >> $jobfile
4192	echo "%END%" >> $jobfile
4193	echo " " >> $jobfile
4194
4195
4196	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
4197	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4198	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
4199	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
4200	echo "%END%" >> $jobfile
4201	if [[ $host = lctit ]]
4202	then
4203	echo "sed 's/bin\/ksh/home2\/usr5\/mkanda\/pub\/ksh/' < $mrun_script_name > mrun_new" >> $jobfile
4204	echo "mv mrun_new $mrun_script_name" >> $jobfile
4205	fi
4206	echo "chmod u+x $mrun_script_name" >> $jobfile
4207	echo "execute_mrun=true" >> $jobfile
4208	echo " " >> $jobfile
4209
4210	fi
4211
4212
4213	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
4214	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
4215	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
4216	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
4217	if [[ $do_remote = true ]]
4218	then
4219	(( i = 0 ))
4220	while (( i < iin ))
4221	do
4222	(( i = i + 1 ))
4223	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
4224	if [[ "${transin[$i]}" = job ]]
4225	then
4226	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
4227	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
4228	echo " " >> $jobfile
4229	echo "%END%" >> $jobfile
4230	else
4231	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
4232	fi
4233
4234	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
4235	echo "if [[ \$? = 1 ]]" >> $jobfile
4236	echo "then" >> $jobfile
4237	echo " echo \" \" " >> $jobfile
4238	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
4239	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
4240	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
4241	echo " execute_mrun=false" >> $jobfile
4242	echo "fi" >> $jobfile
4243	done
4244	fi
4245
4246	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
4247	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
4248	echo "LOCAL_PWD=$working_directory" >> $jobfile
4249	echo "export LOCAL_PWD" >> $jobfile
4250
4251	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
4252	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
4253	echo "export LOCAL_MRUN_PATH" >> $jobfile
4254
4255	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
4256	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
4257	then
4258	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
4259	fi
4260
4261	# MRUN AUF ZIELRECHNER AUFRUFEN
4262	echo "set -x" >> $jobfile
4263	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
4264
4265	echo 'ls -al; echo `pwd`' >> $jobfile
4266	echo "cd \$HOME" >> $jobfile
4267	echo "rm -rf $TEMPDIR" >> $jobfile
4268
4269
4270
4271
4272	# JOB PER SUBJOB STARTEN
4273	if [[ $silent = false ]]
4274	then
4275	printf "\n "
4276	else
4277	printf "\n\n"
4278	fi
4279
4280	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog $jobfile
4281	rm -rf $jobfile
4282
4283
4284	fi # ENDE REMOTE-TEIL
4285
4286
4287
4288	# ENDE DER PROZEDUR

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