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source: palm/trunk/SCRIPTS/mrun @ 1273

Last change on this file since 1273 was 1273, checked in by witha, 11 years ago
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1	#!/bin/ksh
2
3	# mrun - script for running PALM jobs
4
5	#--------------------------------------------------------------------------------#
6	# This file is part of PALM.
7	#
8	# PALM is free software: you can redistribute it and/or modify it under the terms
9	# of the GNU General Public License as published by the Free Software Foundation,
10	# either version 3 of the License, or (at your option) any later version.
11	#
12	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
13	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
14	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
15	#
16	# You should have received a copy of the GNU General Public License along with
17	# PALM. If not, see <http://www.gnu.org/licenses/>.
18	#
19	# Copyright 1997-2012 Leibniz University Hannover
20	#--------------------------------------------------------------------------------#
21	#
22	# Current revisions:
23	# ------------------
24	#
25	#
26	# Former revisions:
27	# -----------------
28	# $Id: mrun 1273 2014-01-08 10:23:29Z witha $
29	#
30	# 1272 2014-01-08 10:19:32Z witha
31	# small adjustment for lcflow
32	#
33	# 1270 2013-12-16 11:05:01Z fricke
34	# call of combine_plot_fields adjusted for lccrayb/lccrayh
35	#
36	# 1255 2013-11-07 14:43:35Z raasch
37	# further adjustments for lccrayb remote access
38	#
39	# 1241 2013-10-30 11:36:58Z heinze
40	# Enable use of nudging input and input of large scale forcing from
41	# external files
42	#
43	# 1229 2013-09-20 06:55:19Z raasch
44	# further adjustments for lccrayb
45	#
46	# 1224 2013-09-16 07:27:23Z raasch
47	# first adjustments for lccrayb
48	#
49	# 1210 2013-08-14 10:58:20Z raasch
50	# fftw support added
51	#
52	# 1201 2013-07-10 16:17:59Z witha
53	# adjustments for Forwind cluster (lcflow)
54	#
55	# 1199 2013-07-05 14:52:22Z raasch
56	# adjustments for CSC Helsinki (lccrayf),
57	# executables for batch jobs can be created in advance, in order to avoid calling
58	# the compiler within the batch job (only works if batch jobs are submitted on
59	# local host)
60	#
61	# 1190 2013-06-25 09:39:21Z heinze
62	# enable use of automatic restarts for ibmh
63	# use of cluster/express queue enabled (ibmh)
64	#
65	# 1124 2013-04-09 15:46:52Z raasch
66	# variable "memory" is exported via typeset option -x, because otherwise an unknown
67	# side effect may lead to data loss while getopts is reading the script-option arguments
68	#
69	# 1122 2013-04-09 08:37:16Z heinze
70	# Bugfix: change type of variable last_char
71	#
72	# 1119 2013-04-05 15:11:19Z raasch
73	# Bugfix for setting -T option for subjob
74	#
75	# 1108 2013-03-05 07:03:32Z raasch
76	# bugfix for coupled runs on lckyut/lckyuh
77	#
78	# 1106 2013-03-04 05:31:38Z raasch
79	# --stdin argument for mpiexec on lckyuh
80	# -y and -Y settings output to header
81	#
82	# 1103 2013-02-20 02:15:53Z raasch
83	# default script runs again under ksh, because of unsolved problems with read
84	# from stdin: when bash script is called from a ksh, message "read error: 0:
85	# Resource temporarily unavailable" appears and script does not stop,
86	# further bash compatibility adjustments,
87	# shebang line replaced by /bin/bash when running jobs on lckyuh; no restarts
88	# on lckyuh, but mrun does not terminate and issues a warning instead
89	#
90	# 1101 2013-02-17 10:20:21Z raasch
91	# script now running under bash instead of ksh, which required small adjustments
92	# (output formatting with printf instead "typeset -L/-R", print replaced by echo,
93	# read from stdin),
94	# cross compilername on lckyuh compute nodes replaced by real compiler name
95	#
96	# 1099 2013-02-10 01:47:43Z raasch
97	# adjustments for Kyushu-University computing center (lckyuh - hayaka)
98	# and for Forwind cluster (lcflow)
99	# small further adjustments for lckyut
100	#
101	# 1094 2013-02-03 01:52:12Z raasch
102	# explicit ssh/scp port can be set in config file with environment variable
103	# scp_port. This port is handled to all ssh/scp/batch_scp calls.
104	# decalpha parts (yonsei) removed
105	#
106	# 2013-02-02 07:06:13Z raasch
107	# adjustments for Kyushu-University computing center (lckyut - tatara)
108	#
109	# 1083 2013-01-04 10:22:09Z maronga
110	# bugfix in parameter file check (read %cpp_options was missing)
111	#
112	# 1069 2012-11-28 16:18:43Z maronga
113	# bugfix: coupling mode was always set to mpi2, typos removed
114	#
115	# 1058 2012-11-21 07:00:35Z raasch
116	# Intel inspector (inspxe) is given the number of PEs instead of the number of
117	# nodes
118	#
119	# 1046 2012-11-09 14:38:45Z maronga
120	# code put under GPL (PALM 3.9)
121	#
122	# 21/03/94 - Siggi - first version finished
123	# 03/03/94 - Siggi - script development started
124	#
125	#--------------------------------------------------------------------------------#
126	# mrun - script for running PALM jobs
127	#--------------------------------------------------------------------------------#
128
129
130
131	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
132
133	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
134	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
135	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
136
137	AddFilenames=""
138	additional_conditions=""
139	add_source_path=""
140	afname=""
141	archive_save=true
142	archive_system=none
143	check_namelist_files=true
144	combine_plot_fields=true
145	compiler_name=""
146	cond1=""
147	cond2=""
148	config_file=.mrun.config
149	coupled_dist=""
150	coupled_mode="mpi1"
151	cpp_opts=""
152	cpp_options=""
153	cpumax=0
154	cpurest=0
155	create_executable_for_batch=false
156	delete_temporary_catalog=true
157	do_batch=false
158	do_compile=true
159	do_remote=false
160	do_stagein=true
161	do_stageout=true
162	do_trace=false
163	email_notification="none"
164	exclude=""
165	executable=""
166	execution_error=false
167	fftw_inc=""
168	fftw_lib=""
169	fftw_support=false
170	fimm=false
171	fname=test
172	fromhost=""
173	global_revision=""
174	group_number=none
175	host=""
176	host_file=""
177	hp=""
178	ignore_archive_error=false
179	input_list=""
180	interpreted_config_file=""
181	job_catalog="~/job_queue"
182	job_on_file=""
183	keep_data_from_previous_run=false
184	link_local_input=false
185	link_local_output=false
186	localhost_realname=$(hostname)
187	local_compile=false
188	local_dvrserver_running=.FALSE.
189	locat=normal
190	mainprog=""
191	makefile=""
192	max_par_io_str=""
193	mc=$0
194	while [[ $(echo $mc \| grep -c "/") != 0 ]]
195	do
196	mc=`echo $mc \| cut -f2- -d"/"`
197	done
198	module_calls=""
199	mrun_script_name=$mc
200	netcdf_inc=""
201	netcdf_lib=""
202	netcdf_support=false
203	node_usage=default
204	numprocs=""
205	numprocs_atmos=0
206	numprocs_ocean=0
207	OOPT=""
208	openmp=false
209	output_list=""
210	package_list=""
211	punkte="..........................................................."
212	queue=none
213	read_from_config=""
214	restart_run=false
215	if [[ `hostname` = rte10 ]]
216	then
217	return_addres=133.5.185.60
218	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
219	elif [[ `hostname` = climate0 ]]
220	then
221	return_addres=165.132.26.68
222	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
223	elif [[ `hostname` = urban00 ]]
224	then
225	return_addres=147.46.30.151
226	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
227	else
228	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
229	fi
230	return_password=""
231	return_username=$LOGNAME
232	remotecall=false
233	remote_username=""
234	run_coupled_model=false
235	run_mode=""
236	scirocco=false
237	store_on_archive_system=false
238	striche=" ----------------------------------------------------------------------------"
239	silent=false
240	source_list=""
241	source_path=SOURCE
242	tasks_per_node=""
243	threads_per_task=1
244	tmpcreate=false
245	tmp_data_catalog=""
246	transfer_problems=false
247	usern=$LOGNAME
248	use_openmp=false
249	version="MRUN 2.0 Rev$Rev: 1273 $"
250	working_directory=`pwd`
251	TOPT=""
252	XOPT=""
253	zeit=$( date \| cut -c 12-19 )
254
255	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 stagein_anz=0 stageout_anz=0
256	typeset -x -i memory=0 # has to be exported here, otherwise an unknown side
257	# effect may cause data loss when getopts is reading the
258	# script-option arguments
259	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek last_char_int maxcycle minuten nodes pes sekunden tp1
260
261
262
263
264	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
265	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
266
267	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
268	# EXPORTIERT WERDEN
269	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
270	export group_number input_list numprocs output_list queue run_mode
271
272
273
274	# FEHLERBEHANDLUNG
275	# BEI EXIT:
276	trap 'rm -rf $working_directory/tmp_mrun
277	if [[ $locat != localhost ]]
278	then
279	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
280	# then
281	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
282	#MRUN-calls on $localhost
283	#
284	#date and time user localhost remotehost termination mrun-command
285	#--------------------------------------------------------------------------------------------------------------------
286	#%STATEND%
287	# chmod 666 ${mrun_path}/statistik/mrun_statistik
288	# fi
289	#
290	# # EINTRAG IN DIE STATISTIK-DATEI
291	# string1=`date` #-L35
292	# string2=$usern #-L12
293	# string3=$localhost_realname #-L12
294	# string4=$host #-L12
295	# string5=$locat #-L12
296	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
297	# then
298	# if [[ $do_batch = true ]]
299	# then
300	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
301	# else
302	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
303	# fi
304	# fi
305	echo " " > /dev/null
306	fi
307
308	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
309	then
310
311	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
312	(( i = 0 ))
313	while (( i < iec ))
314	do
315	(( i = i + 1 ))
316	printf "\n *** Execution of ERROR-command:\n"
317	printf " >>> ${err_command[$i]}\n"
318	eval ${err_command[$i]}
319	done
320	if [[ -n $interpreted_config_file ]]
321	then
322	rm -rf $interpreted_config_file
323	fi
324	if [[ -n .mrun_environment ]]
325	then
326	rm -rf .mrun_environment
327	fi
328	if [[ $tmpcreate = true ]]
329	then
330	printf "\n *** Contents of \"$TEMPDIR\":\n"
331	ls -al; cd
332	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
333	fi
334	if [[ "$dvrserver_id" != "" ]]
335	then
336	echo "+++ killing dvrserver_id=$dvrserver_id"
337	kill $dvrserver_id
338	fi
339	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
340	then
341	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
342	fi
343	printf "\n\n+++ MRUN killed \n\n"
344	elif [[ $locat != control_c ]]
345	then
346	printf "\n\n --> all actions finished\n\n"
347	printf " Bye, bye $usern !!\n\n"
348	fi' exit
349
350
351	# BEI TERMINAL-BREAK:
352	trap 'rm -rf $working_directory/tmp_mrun
353	rm -rf $working_directory/tmp_check_namelist_files
354	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
355	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
356	then
357	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
358	fi
359	if [[ "$dvrserver_id" != "" ]]
360	then
361	echo "+++ killing dvrserver_id=$dvrserver_id"
362	kill $dvrserver_id
363	fi
364	printf "\n+++ MRUN killed by \"^C\" \n\n"
365	locat=control_c
366	exit
367	' 2
368
369
370	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
371	# BEEN SET
372	if [[ "$PALM_BIN" = "" ]]
373	then
374	printf "\n +++ environment variable PALM_BIN has not been set"
375	printf "\n please set it to the directory where the PALM scripts are located"
376	locat=palm_bin; exit
377	fi
378	export PATH=$PALM_BIN:$PATH
379
380
381
382	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
383	# FUER FOLGEJOBS BENOETIGT WIRD
384	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vw:xX:yY:zZ option
385	do
386	case $option in
387	(a) afname=$OPTARG;;
388	(A) store_on_archive_system=true; mc="$mc -A";;
389	(b) do_batch=true; mc="$mc -b";;
390	(B) delete_temporary_catalog=false; mc="$mc -B";;
391	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
392	(C) restart_run=true; mc="$mc -C";;
393	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
394	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
395	(F) job_on_file="-D"; mc="$mc -F";;
396	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
397	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
398	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
399	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
400	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
401	(I) ignore_archive_error=true; mc="$mc -I";;
402	(k) keep_data_from_previous_run=true; mc="$mc -k";;
403	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
404	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
405	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
406	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
407	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
408	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
409	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
410	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
411	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
412	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
413	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
414	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
415	(S) read_from_config=false; mc="$mc -S";;
416	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
417	(T) mrun_tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
418	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
419	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
420	(v) silent=true; mc="$mc -v";;
421	(w) max_par_io_str=$OPTARG; mc="$mc -w$OPTARG";;
422	(x) do_trace=true;set -x; mc="$mc -x";;
423	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
424	(y) ocean_file_appendix=true; mc="$mc -y";;
425	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
426	(z) check_namelist_files=false; mc="$mc -z";;
427	(Z) combine_plot_fields=false; mc="$mc -Z";;
428	(\?) printf "\n +++ unknown option $OPTARG \n"
429	printf "\n --> type \"$0 ?\" for available options \n"
430	locat=parameter;exit;;
431	esac
432	done
433
434
435	# EVTL. POSITIONSPARAMETER EINLESEN
436	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
437	(( to_shift = $OPTIND - 1 ))
438	shift $to_shift
439
440	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
441	if [[ "$1" = "?" ]]
442	then
443	(printf "\n *** mrun can be called as follows:\n"
444	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. -z -Z <modus> \n"
445	printf "\n Description of available options:\n"
446	printf "\n Option Description Default-Value"
447	printf "\n -a base name of input files equiv. -d"
448	printf "\n -A archiving when using file-attribute fl"
449	printf "\n -b batch-job on local machine ---"
450	printf "\n -B do not delete temporary directory at end ---"
451	printf "\n -c configuration file .mrun.config"
452	printf "\n -d base name of files attached to program test"
453	printf "\n -D preprocessor(cpp)-directives \"\" "
454	printf "\n -F create remote job file only ---"
455	printf "\n -h execution host $localhost_realname"
456	printf "\n -i INPUT control list \"\" "
457	printf "\n -I archiving errors of previous batch-jobs"
458	printf "\n will be ignored"
459	printf "\n -k keep data from previous run"
460	printf "\n -K additional conditions for controling"
461	printf "\n usage of conditional code and"
462	printf "\n env-variables in configuration file \"\" "
463	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
464	printf "\n -M Makefile name Makefile"
465	printf "\n -n node usage (shared/not_shared) depending on -h"
466	printf "\n -o OUTPUT control list \"\" "
467	printf "\n -O use OpenMP ---"
468	printf "\n -p software package list \"\" "
469	printf "\n -q queue \"$queue\" "
470	printf "\n -r run control list (combines -i -o) \"\" "
471	printf "\n -s filenames of routines to be compiled \"\" "
472	printf "\n must end with .f, .f90, .F, or .c !"
473	printf "\n use \"..\" for more than one file and wildcards"
474	printf "\n -s LM compiles all locally modified files"
475	printf "\n -S config file interpreted by shellscript ---"
476	printf "\n -t allowed cpu-time in seconds (batch) 0"
477	printf "\n -T tasks per node depending on -h"
478	printf "\n -u username on remote machine \"\" "
479	printf "\n -v no prompt for confirmation ---"
480	printf "\n -w maximum parallel io streams as given by -X"
481	printf "\n -x tracing of mrun for debug purposes ---"
482	printf "\n -X # of processors (on parallel machines) 1"
483	printf "\n -y add appendix \"_O\" to all local output"
484	printf "\n files (ocean precursor runs followed by"
485	printf "\n coupled atmosphere-ocean runs) ---"
486	printf "\n -Y run coupled model, \"#1 #2\" with"
487	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
488	printf "\n -z disable a priori parameter file check ---"
489	printf "\n -Z skip combine_plot_fields at the end of "
490	printf "\n the simulation ---"
491	printf "\n "
492	printf "\n Possible values of positional parameter <modus>:"
493	printf "\n \"?\" - this outline \n\n") \| more
494	exit
495	elif [[ "$1" != "" ]]
496	then
497	printf "\n +++ positional parameter $1 unknown \n"
498	locat=parameter; exit
499	fi
500
501
502
503	# KURZE STARTMELDUNG
504	printf "\n*** $version "
505	printf "\n will be executed. Please wait ..."
506
507
508
509	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
510	if [[ ! -f $config_file ]]
511	then
512	printf "\n\n +++ configuration file: "
513	printf "\n $config_file"
514	printf "\n does not exist"
515	locat=connect; exit
516	fi
517
518
519	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
520	line=""
521	grep "%host_identifier" $config_file > tmp_mrun
522	while read line
523	do
524	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
525	then
526	HOSTNAME=`echo $line \| cut -d" " -s -f2`
527	host_identifier=`echo $line \| cut -d" " -s -f3`
528	if [[ $localhost_realname = $HOSTNAME ]]
529	then
530	localhost=$host_identifier
531	break
532	fi
533	fi
534	done < tmp_mrun
535
536	if [[ "$localhost" = "" ]]
537	then
538	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
539	printf "\n for local host \"$localhost_realname\"."
540	printf "\n Please add line"
541	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
542	printf "\n to the configuration file."
543	locat=localhost; exit
544	fi
545
546
547	# HOSTSPEZIFISCHE VARIABLEN SETZEN
548	case $localhost_realname in
549	(r1\|r2\|h01\|b01) archive_system=tivoli;;
550	(cs*) archive_system=ut;;
551	(fimm.bccs.uib.no) fimm=true;;
552	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
553	(scirocco) scirocco=true;;
554	esac
555
556
557
558	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
559	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
560	[[ "$afname" = "" ]] && afname=$fname
561
562
563	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
564	if [[ "$run_mode" != "" ]]
565	then
566	input_list="$input_list $run_mode"
567	output_list="$output_list $run_mode"
568	fi
569
570
571	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
572	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
573	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
574	# STARTET)
575	if [[ "$fromhost" = "" ]]
576	then
577	fromhost=$localhost
578	fi
579
580
581	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
582	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
583	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
584	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
585	if [[ -n $host && "$host" != $localhost ]]
586	then
587	do_batch=true
588	do_remote=true
589	case $host in
590	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|nech\|necriam\|lccrayb\|lccrayf\|lcflow\|lckyoto\|lcsgib\|lcsgih\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
591	(*) printf "\n"
592	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
593	printf "\n is not available"
594	locat=nqs; (( iec = 0 )); exit;;
595	esac
596	else
597	host=$localhost
598	fi
599
600
601	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
602	if [[ -n $additional_conditions ]]
603	then
604	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
605	cond1=`echo $additional_conditions \| cut -d" " -f1`
606	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
607	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
608	if [[ -n $dummy ]]
609	then
610	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
611	locat=options; exit
612	fi
613	block=_$cond1
614	[[ -n $cond2 ]] && block=${block}_$cond2
615	fi
616
617
618	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
619	if [[ $run_coupled_model = true ]]
620	then
621
622	if [[ -n $coupled_dist ]]
623	then
624
625	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
626	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
627
628	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
629	then
630
631	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
632	printf "\n PEs (total) : $numprocs"
633	printf "\n PEs (atmosphere): $numprocs_atmos"
634	printf "\n PEs (ocean) : $numprocs_ocean"
635	locat=coupling; exit
636
637	fi
638
639	else
640
641	(( numprocs_ocean = $numprocs / 2 ))
642	(( numprocs_atmos = $numprocs / 2 ))
643
644	fi
645	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
646
647	# GET coupled_mode FROM THE CONFIG FILE
648	line=""
649	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
650	while read line
651	do
652	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && $(echo $line \| cut -d" " -s -f4) = $cond1 && $(echo $line \| cut -d" " -s -f4) = $cond2 ]]
653	then
654	coupled_mode="mpi2"
655	fi
656	done < tmp_mrun
657
658	fi
659
660
661	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
662	# ARCHIVIERUNG FEHLGESCHLAGEN IST
663	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
664	then
665	if [[ $ignore_archive_error = false ]]
666	then
667	printf "\n +++ data archiving of previous run failed"
668	printf "\n see directory \~/job_queue on remote machine"
669	locat=archive; exit
670	else
671	printf "\n +++ warning: data archiving in a previous run failed"
672	printf "\n MRUN continues, trying to get backup copy"
673	fi
674	fi
675
676
677	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
678	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
679	mrun_memory=$memory
680	mrun_group_number=$group_number
681	mrun_cpumax=$cpumax
682	mrun_numprocs=$numprocs
683
684
685	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
686	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
687	if [[ "$read_from_config" = false ]]
688	then
689
690	[[ $silent = false ]] && printf "\n Reading the configuration file... "
691	while read zeile
692	do
693	[[ $silent = false ]] && printf "."
694
695
696	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
697	# ERSETZEN
698	eval zeile=\"$zeile\"
699
700
701	# INTERPRETATION DER ZEILE
702	if [[ "$(echo $zeile)" = "" ]]
703	then
704	# LEERZEILE, KEINE AKTION
705	continue
706
707	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
708	then
709
710	# ZEILE IST KOMMENTARZEILE
711	true
712
713	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
714	then
715
716	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
717	zeile=$(echo $zeile \| cut -c2-)
718	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
719	var=`echo $zeile \| cut -d" " -f1`
720	value=`echo $zeile \| cut -d" " -s -f2`
721	for_host=`echo $zeile \| cut -d" " -s -f3`
722	for_cond1=`echo $zeile \| cut -d" " -s -f4`
723	for_cond2=`echo $zeile \| cut -d" " -s -f5`
724
725	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
726	then
727
728	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
729	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
730	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
731
732
733	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
734	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
735	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
736	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
737	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
738	# KONFIGURATIONSDATEI
739	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
740	then
741	eval $var=\$value
742
743	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
744	if [[ $do_trace = true ]]
745	then
746	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
747	fi
748	fi
749
750	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
751	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
752	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
753	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
754	if [[ $var = host ]]
755	then
756	if [[ -n $host && "$host" != $localhost ]]
757	then
758	do_batch=true
759	do_remote=true
760	case $host in
761	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lccrayb\|lccrayf\|lcflow\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
762	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
763	printf "\n is not available"
764	locat=nqs; exit;;
765	esac
766	else
767	host=$localhost
768	fi
769	fi
770
771	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
772	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
773	# DEN PROGRAMMEN BENOETIGT WERDEN
774	export $var
775	fi
776
777
778
779
780	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
781	then
782
783	# ZEILE DEFINIERT ERROR-KOMMANDO
784	(( iec = iec + 1 ))
785	zeile=$(echo $zeile \| cut -c4-)
786	err_command[$iec]="$zeile"
787
788	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
789	then
790
791	# ZEILE DEFINIERT INPUT-KOMMANDO
792	(( iic = iic + 1 ))
793	zeile=$(echo $zeile \| cut -c4-)
794	in_command[$iic]="$zeile"
795
796	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
797	then
798
799	# ZEILE DEFINIERT OUTPUT-KOMMANDO
800	(( ioc = ioc + 1 ))
801	zeile=$(echo $zeile \| cut -c4-)
802	out_command[$ioc]="$zeile"
803
804	else
805
806	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
807	# s2a: in/out - Feld
808	# s2b: loc - Feld (optional)
809	# s2c: tr/ar - Feld (optional)
810	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
811	s1=`echo $zeile \| cut -d" " -f1`
812	s2=`echo $zeile \| cut -d" " -s -f2`
813	s2a=$(echo $s2 \| cut -d":" -f1)
814	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
815	then
816	s2b=""
817	s2c=""
818	else
819	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
820	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
821	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
822	fi
823	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
824	s3=`echo $zeile \| cut -d" " -f3`
825	s4=`echo $zeile \| cut -d" " -s -f4`
826	s5=`echo $zeile \| cut -d" " -s -f5`
827	s6=`echo $zeile \| cut -d" " -s -f6`
828
829
830	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
831	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
832	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
833	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
834	# HANDEN SEIN MUSS (D.H. s2b = loc)
835	IFSALT="$IFS"; IFS="$IFS:"
836	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
837	then
838	found=false
839	for actual in $input_list
840	do
841	for formal in $s3
842	do
843	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
844	done
845	done
846	if [[ $found = true ]]
847	then
848	(( iin = iin + 1 ))
849	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
850	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
851	extin[$iin]=$s6
852	fi
853	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
854	then
855	found=false
856	for actual in $output_list
857	do
858	for formal in $s3
859	do
860	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
861	done
862	done
863	if [[ $found = true ]]
864	then
865	(( iout = iout + 1 ))
866	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
867	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
868	fi
869	elif [[ "$s2a" != in && "$s2a" != out ]]
870	then
871	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
872	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
873	locat=connect; exit
874	fi
875	IFS="$IFSALT"
876	fi
877	done < $config_file
878
879	else
880
881
882	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
883	[[ $silent = false ]] && printf "..."
884	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
885	export interpreted_config_file=.icf.$RANDOM
886
887
888
889	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
890	# VERFUEGUNG STELLEN
891	cat > .mrun_environment << %%END%%
892	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
893	config_file = '$config_file', do_remote = '$do_remote',
894	do_trace = '$do_trace', host = '$host',
895	input_list = '$input_list', icf = '$interpreted_config_file',
896	localhost = '$localhost', output_list = '$output_list' /
897
898	%%END%%
899
900	if [[ $localhost_realname = "sx-fep" ]]
901	then
902	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
903	else
904
905	if [[ "$host" != $localhost ]]
906	then
907
908	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
909	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
910	if [[ $? != 0 ]]
911	then
912	printf "\n\n +++ no interpret_config found"
913	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
914	locat=interpret_config; exit
915	fi
916	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
917	$interpret_config_executable
918
919	else
920
921	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
922	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
923	then
924	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
925	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
926	locat=interpret_config; exit
927	else
928	interpret_config${block}.x
929	fi
930
931	fi
932	fi
933	rm .mrun_environment
934
935
936	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
937	chmod u+x $interpreted_config_file
938	export PATH=$PATH:.
939	. $interpreted_config_file
940	rm $interpreted_config_file
941
942	fi
943
944
945	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
946	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
947	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
948	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
949	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
950	[[ "$max_par_io_str" != "" ]] && maximum_parallel_io_streams=$max_par_io_str
951	[[ "$mrun_tasks_per_node" != "" ]] && tasks_per_node=$mrun_tasks_per_node
952
953
954	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
955	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
956	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
957	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
958	if [[ "$SOURCES_COMPLETE" = "" ]]
959	then
960
961	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
962	# VEREINBART WURDE
963	source_path=""
964	line=""
965	grep "%source_path" $config_file > tmp_mrun
966	while read line
967	do
968	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
969	then
970	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
971	then
972	global_source_path=`echo $line \| cut -d" " -f2`
973	fi
974	fi
975	done < tmp_mrun
976
977	line=""
978	found=false
979	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
980	while read line
981	do
982	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
983	then
984	if [[ $found = true ]]
985	then
986	printf "\n\n +++ more than one source path found in configuration file"
987	printf "\n for local host \"$localhost\" "
988	locat=source_path; exit
989	fi
990	source_path=`echo $line \| cut -d" " -f2`
991	found=true
992	fi
993	done < tmp_mrun
994	rm tmp_mrun
995
996	if [[ "$source_path" = "" ]]
997	then
998	if [[ "$global_source_path" != "" ]]
999	then
1000	source_path=$global_source_path
1001	else
1002	printf "\n\n +++ no source path found in configuration file"
1003	printf "\n for local host \"$localhost\" "
1004	locat=source_path; exit
1005	fi
1006	fi
1007	eval source_path=$source_path
1008
1009	if [[ ! -d $source_path ]]
1010	then
1011	printf "\n\n +++ source path \"$source_path\" on local host"
1012	printf "\n \"$localhost\" does not exist"
1013	locat=source_path; exit
1014	fi
1015
1016	fi
1017
1018
1019	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
1020	# DURCH OPTION -G MITGETEILT)
1021	if [[ "$global_revision" = "" && $host != "ibmkisti" ]]
1022	then
1023	global_revision=`svnversion $source_path 2>/dev/null`
1024	global_revision="Rev: $global_revision"
1025	fi
1026
1027
1028	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
1029	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
1030	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
1031	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
1032	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
1033	if [[ -n $host && "$host" != $localhost ]]
1034	then
1035	do_batch=true
1036	do_remote=true
1037	case $host in
1038	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lccrayb\|lccrayf\|lcflow\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
1039	(*) printf "\n"
1040	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
1041	printf "\n is not available"
1042	locat=nqs; (( iec = 0 )); exit;;
1043	esac
1044	else
1045	host=$localhost
1046	fi
1047
1048
1049	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
1050	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1051	then
1052
1053	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
1054	if [[ ! -n $numprocs ]]
1055	then
1056	printf "\n"
1057	printf "\n +++ option \"-K parallel\" requires additional specification"
1058	printf "\n of the number of processors to be used by"
1059	printf "\n mrun-option \"-X\" or by environment-variable"
1060	printf "\n \"numprocs\" in the configuration file"
1061	locat=numprocs; (( iec = 0 )); exit
1062	fi
1063
1064	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
1065	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
1066	# GESAMTPROZESSORANZAHL IST
1067	if [[ "$tasks_per_node" = "" && $host != lcflow && $host != lcxt5m ]]
1068	then
1069	printf "\n"
1070	printf "\n +++ option \"-T\" (tasks per node) is missing"
1071	printf "\n set -T option or define tasks_per_node in the config file"
1072	locat=tasks_per_node; (( iec = 0 )); exit
1073	fi
1074	if [[ $host != lcflow && $host != lcxt5m ]]
1075	then
1076	(( ival = $tasks_per_node ))
1077	(( pes = numprocs ))
1078	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1079	# then
1080	# (( pes = pes - 1 ))
1081	# fi
1082	(( ii = pes / ival ))
1083	if (( pes - ii * ival > 0 ))
1084	then
1085	printf "\n"
1086	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1087	printf "\n divisor of the total number of processors (option \"-X\")"
1088	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1089	locat=tasks_per_node; (( iec = 0 )); exit
1090	fi
1091	fi
1092
1093
1094	# IBMY HAT NUR EINEN KNOTEN
1095	if [[ $host = ibmy ]]
1096	then
1097	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1098	then
1099	printf "\n"
1100	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1101	printf "\n total number of processors (option \"-X\")"
1102	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1103	locat=tasks_per_node; (( iec = 0 )); exit
1104	fi
1105	fi
1106
1107
1108	# SETTINGS FOR SUBJOB-COMMAND
1109	OOPT="-O $threads_per_task"
1110
1111	# GESAMTZAHL DER KNOTEN BESTIMMEN
1112	if [[ "$tasks_per_node" != "" ]]
1113	then
1114	TOPT="-T $tasks_per_node"
1115	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1116	fi
1117
1118	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1119	# SETZEN
1120	if [[ $node_usage = default ]]
1121	then
1122	if [[ $host = ibms ]]
1123	then
1124	node_usage=shared
1125	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1126	then
1127	node_usage=singlejob
1128	else
1129	node_usage=not_shared
1130	fi
1131	fi
1132
1133	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
1134	then
1135	printf "\n"
1136	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1137	printf "\n \"shared\" or \"not_shared\""
1138	locat=tasks_per_node; (( iec = 0 )); exit
1139	fi
1140
1141	fi
1142
1143	# PRUEFEN, OB HOSTFILE EXISTIERT
1144	if [[ -n $hostfile ]]
1145	then
1146	if [[ ! -f $hostfile ]]
1147	then
1148	printf "\n"
1149	printf "\n +++ hostfile \"$hostfile\" does not exist"
1150	locat=hostfile; exit
1151	fi
1152	fi
1153
1154	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1155	if [[ $host = ibmy && $do_remote = false ]]
1156	then
1157	if [[ ! -f $HOME/.rhosts ]]
1158	then
1159	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1160	printf "\n\n *** file:"
1161	printf "\n $HOME/.rhosts"
1162	printf "\n was created\n"
1163	fi
1164	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1165	then
1166	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1167	printf "\n\n *** file:"
1168	printf "\n $HOME/.rhosts"
1169	printf "\n was extended by the name of the current host\n"
1170	fi
1171	fi
1172
1173
1174	# Set default value for the maximum number of parallel io streams
1175	if [[ "$maximum_parallel_io_streams" = "" ]]
1176	then
1177	maximum_parallel_io_streams=$numprocs
1178	fi
1179
1180
1181	# Set port number option for calls of ssh/scp, subjob and batch_scp scripts
1182	if [[ "$scp_port" != "" ]]
1183	then
1184	PORTOPT="-P $scp_port"
1185	SSH_PORTOPT="-p $scp_port"
1186	fi
1187
1188
1189	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1190	if [[ $queue = none ]]
1191	then
1192	case $host in
1193	(ibmh) queue=cluster;;
1194	(ibmkisti) queue=class.32plus;;
1195	(ibmy) queue=parallel;;
1196	(lckiaps) queue=normal;;
1197	(lckyoto) queue=ph;;
1198	(lckyuh) queue=fx-single;;
1199	(lckyut) queue=cx-single;;
1200	(lcsgib) queue=testq;;
1201	(lcsgih) queue=testq;;
1202	(lctit) queue=S;;
1203	(nech) queue=none;;
1204	(necriam) queue=SP;;
1205	(unics) queue=unics;;
1206	esac
1207	fi
1208
1209
1210	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1211	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1212	# ERMITTELN
1213	(( i = 0 ))
1214	while (( i < iin ))
1215	do
1216	(( i = i + 1 ))
1217	(( maxcycle = 0 ))
1218
1219	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1220	if [[ "${actionin[$i]}" = di ]]
1221	then
1222	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1223	# REM-MASCHINE AUSWERTEN
1224	eval filename=${pathin[$i]}/${endin[$i]}
1225	else
1226	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1227	# REM-MASCHINE AUSWERTEN
1228	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1229	fi
1230	eval pathname=${pathin[$i]}
1231
1232	# SAVE INPUT FILE NAME FOR PARAMETER FILE CHECK
1233	if [[ ("${transin[$i]}" = job) && (-f $filename) ]]
1234	then
1235	filename_input=$filename
1236	fi
1237
1238	# PRUEFEN AUF VORHANDENSEIN
1239	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1240	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1241	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1242	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1243	then
1244	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1245	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1246	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1247	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1248	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1249	if [[ "${transin[$i]}" != "locopt" ]]
1250	then
1251	printf "\n\n +++ INPUT-file: "
1252	if [[ "${extin[$i]}" = "" ]]
1253	then
1254	printf "\n $filename"
1255	else
1256	printf "\n $filename.${extin[$i]}"
1257	fi
1258	printf "\n does not exist\n"
1259	locat=input; exit
1260	else
1261	transin[$i]="unavailable"
1262	fi
1263	else
1264
1265	# ZYKLUSNUMMER FESTSTELLEN
1266	ls -1 -d $filename > filelist 2>/dev/null
1267	ls -1 -d $filename.* >> filelist 2>/dev/null
1268	while read zeile
1269	do
1270	cycle=$(echo $zeile \| cut -f2 -d".")
1271	if [[ "$cycle" = "$zeile" ]]
1272	then
1273	(( icycle = 0 ))
1274	elif [[ "$cycle" = "${extin[$i]}" ]]
1275	then
1276	(( icycle = 0 ))
1277	else
1278	(( icycle = $cycle ))
1279	fi
1280	if (( icycle > maxcycle ))
1281	then
1282	(( maxcycle = icycle ))
1283	file_to_be_used=$zeile
1284	fi
1285	done <filelist
1286	rm filelist
1287
1288	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1289	if (( maxcycle > 0 ))
1290	then
1291	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1292	then
1293	filename=${filename}.$maxcycle.${extin[$i]}
1294	else
1295	filename=${filename}.$maxcycle
1296	fi
1297	else
1298	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1299	then
1300	filename=${filename}.${extin[$i]}
1301	fi
1302	fi
1303
1304	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1305	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1306	absnamein[$i]=$filename
1307	if (( maxcycle > 0 ))
1308	then
1309	if [[ "${actionin[$i]}" = di ]]
1310	then
1311	frelin[$i]=${endin[$i]}.$maxcycle
1312	else
1313	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1314	fi
1315	else
1316	if [[ "${actionin[$i]}" = di ]]
1317	then
1318	frelin[$i]=${endin[$i]}
1319	else
1320	frelin[$i]=${afname}${endin[$i]}
1321	fi
1322	fi
1323
1324	fi
1325	done
1326
1327	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1328	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1329	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1330	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1331	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1332	(( i = 0 ))
1333	while (( i < iout ))
1334	do
1335	(( i = i + 1 ))
1336	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1337	then
1338	if [[ "${actionout[$i]}" = tr ]]
1339	then
1340	actionout[$i]=""
1341	elif [[ "${actionout[$i]}" = trpe ]]
1342	then
1343	actionout[$i]=pe
1344	elif [[ "${actionout[$i]}" = tra ]]
1345	then
1346	actionout[$i]=a
1347	fi
1348	(( maxcycle = 0 ))
1349	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1350	eval catalogname=${pathout[$i]}
1351	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1352	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1353	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1354	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1355	then
1356
1357	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1358	if cat /dev/null > $filename
1359	then
1360	rm $filename
1361	else
1362
1363	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1364	if [[ ! -d $catalogname ]]
1365	then
1366	if mkdir -p $catalogname
1367	then
1368	printf "\n\n *** directory:"
1369	printf "\n $catalogname"
1370	printf "\n was created\n"
1371	else
1372	printf "\n\n +++ OUTPUT-file:"
1373	printf "\n $filename"
1374	printf "\n cannot be created, because directory does not exist"
1375	printf "\n and cannot be created either"
1376	printf "\n"
1377	locat=output ; exit
1378	fi 2>/dev/null
1379	else
1380	printf "\n\n +++ OUTPUT-file:"
1381	printf "\n $filename"
1382	printf "\n cannot be created, although directory exists"
1383	printf "\n"
1384	locat=output ; exit
1385	fi
1386	fi 2>/dev/null
1387	else
1388
1389	# ZYKLUSNUMMER FESTSTELLEN
1390	ls -1 -d $filename > filelist 2>/dev/null
1391	ls -1 -d $filename.* >> filelist 2>/dev/null
1392	while read zeile
1393	do
1394	cycle=$(echo $zeile \| cut -f2 -d".")
1395	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1396	then
1397	(( icycle = 1 ))
1398	else
1399	(( icycle = $cycle + 1 ))
1400	fi
1401	if (( icycle > maxcycle ))
1402	then
1403	(( maxcycle = icycle ))
1404	fi
1405	done <filelist
1406	rm filelist
1407	fi
1408
1409	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1410	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1411	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1412	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1413	if [[ "${actionout[$i]}" != a ]]
1414	then
1415	if (( maxcycle > 0 ))
1416	then
1417	filename=${filename}.$maxcycle
1418	if cat /dev/null > $filename
1419	then
1420	rm $filename
1421	else
1422	printf "\n +++ OUTPUT-file:"
1423	printf "\n $filename"
1424	printf "\n cannot be created"
1425	locat=output ; exit
1426	fi
1427	fi
1428	else
1429	(( maxcycle = maxcycle - 1 ))
1430	if (( maxcycle > 0 ))
1431	then
1432	filename=${filename}.$maxcycle
1433	fi
1434	fi
1435
1436	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1437	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1438	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1439	pathout[$i]=$filename
1440	if (( maxcycle > 0 ))
1441	then
1442	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1443	else
1444	frelout[$i]=${fname}${endout[$i]}
1445	fi
1446
1447	fi
1448	done
1449
1450
1451	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1452	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1453	then
1454	if [[ "$dvr_inc" = "" ]]
1455	then
1456	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1457	printf "\n This is required for the dvrp_graphics package.\n"
1458	locat=dvr; exit
1459	fi
1460	if [[ "$dvr_lib" = "" ]]
1461	then
1462	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1463	printf "\n This is required for the dvrp_graphics package.\n"
1464	locat=dvr; exit
1465	fi
1466	fi
1467
1468
1469	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1470	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1471	# UEBERSETZT ZU WERDEN)
1472	if [[ "$mainprog" = "" && "$executable" = "" ]]
1473	then
1474	printf "\n +++ neither main program nor executable defined"
1475	locat=source; exit
1476	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1477	then
1478	printf "\n +++ main program as well as executable defined"
1479	locat=source; exit
1480	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1481	then
1482	do_compile=false
1483	fi
1484
1485
1486	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1487	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1488	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1489	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1490	then
1491	rm -rf SOURCES_FOR_RUN_$fname
1492	mkdir SOURCES_FOR_RUN_$fname
1493	fi
1494
1495
1496	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1497	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1498	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1499	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1500	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1501	then
1502
1503	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1504
1505	if [[ "$source_list" = LOCALLY_MODIFIED ]]
1506	then
1507
1508	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1509	source_list=""
1510	cd $source_path
1511
1512
1513	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1514	if [[ ! -d .svn ]]
1515	then
1516	printf "\n\n +++ source directory"
1517	printf "\n \"$source_path\" "
1518	printf "\n is not under control of \"subversion\"."
1519	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1520	fi
1521
1522
1523	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1524	Filenames=""
1525	svn status > tmp_mrun
1526	while read line
1527	do
1528	firstc=`echo $line \| cut -c1`
1529	if [[ $firstc = M \|\| $firstc = "?" ]]
1530	then
1531	Name=`echo "$line" \| cut -c8-`
1532	extension=`echo $Name \| cut -d. -f2`
1533	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1534	then
1535	Filenames="$Filenames "$Name
1536	fi
1537	fi
1538	done < tmp_mrun
1539
1540
1541	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1542	for dateiname in $Filenames
1543	do
1544	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1545	source_list=$source_list"$dateiname "
1546	done
1547
1548	cd - > /dev/null
1549
1550
1551	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1552	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1553	# VORHANDEN
1554	elif [[ "$source_list" != "" && $restart_run != true ]]
1555	then
1556
1557	cd $source_path
1558
1559	for filename in $source_list
1560	do
1561
1562	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1563	if [[ $(echo $filename \| grep -c "/") != 0 ]]
1564	then
1565	printf "\n +++ source code file: $filename"
1566	printf "\n must not contain (\"/\") "
1567	locat=source; exit
1568	fi
1569
1570	if [[ ! -f $filename ]]
1571	then
1572	printf "\n +++ source code file: $filename"
1573	printf "\n does not exist"
1574	locat=source; exit
1575	else
1576	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1577	fi
1578
1579	done
1580
1581	cd - > /dev/null
1582
1583	fi
1584
1585
1586	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1587	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1588	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1589	if [[ $restart_run != true ]]
1590	then
1591
1592	if [[ ! -f "$source_path/$mainprog" ]]
1593	then
1594	printf "\n\n +++ main program: $mainprog"
1595	printf "\n does not exist in source directory"
1596	printf "\n \"$source_path\"\n"
1597	locat=source; exit
1598	else
1599	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1600	then
1601	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1602	source_list=${mainprog}" $source_list"
1603	fi
1604	fi
1605	fi
1606
1607
1608	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1609	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1610	if [[ "$restart_run" != true ]]
1611	then
1612	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1613	if [[ ! -f $makefile ]]
1614	then
1615	printf "\n +++ file \"$makefile\" does not exist"
1616	locat=make; exit
1617	else
1618	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1619	fi
1620	fi
1621
1622
1623	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1624	if [[ $restart_run != true && "$add_source_path" != "" ]]
1625	then
1626
1627	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1628	if [[ ! -d $add_source_path ]]
1629	then
1630	printf "\n\n +++ WARNING: additional source code directory"
1631	printf "\n \"$add_source_path\" "
1632	printf "\n does not exist or is not a directory."
1633	printf "\n No source code will be used from this directory!\n"
1634	add_source_path=""
1635	if [[ $silent == false ]]
1636	then
1637	sleep 3
1638	fi
1639	else
1640
1641	cd $add_source_path
1642	found=false
1643
1644	Names=$(ls -1 *.f90 2>&1)
1645	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1646	Names=$(ls -1 *.F90 2>&1)
1647	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1648	Names=$(ls -1 *.F 2>&1)
1649	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1650	Names=$(ls -1 *.f 2>&1)
1651	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1652	Names=$(ls -1 *.c 2>&1)
1653	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1654
1655	cd - > /dev/null
1656	cd SOURCES_FOR_RUN_$fname
1657
1658	# COPY MAKEFILE IF EXISTING
1659	if [[ -f $add_source_path/Makefile ]]
1660	then
1661	printf "\n\n *** user Makefile from directory"
1662	printf "\n \"$add_source_path\" is used \n"
1663	if [[ $silent == false ]]
1664	then
1665	sleep 1
1666	fi
1667	cp $add_source_path/Makefile .
1668	fi
1669
1670	for dateiname in $AddFilenames
1671	do
1672	if [[ -f $dateiname ]]
1673	then
1674	printf "\n +++ source code file \"$dateiname\" found in additional"
1675	printf "\n source code directory \"$add_source_path\" "
1676	printf "\n but was also given with option \"-s\" which means that it should be taken"
1677	printf "\n from directory \"$source_path\"."
1678	locat=source; exit
1679	fi
1680
1681	cp $add_source_path/$dateiname .
1682	source_list="$source_list $dateiname"
1683
1684	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1685	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1686	then
1687	printf "\n\n +++ user file \"$dateiname\" "
1688	printf "\n is not listed in Makefile \n"
1689	locat=source; exit
1690	else
1691
1692	# Default User-Interface von der Liste entfernen, falls Datei
1693	# ein User-Interface enthaelt
1694	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1695	# then
1696	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1697	# then
1698	# rm -rf user_interface.f90
1699	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1700	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1701	# printf "\n since a user-interface is found in file"
1702	# printf "\n \"$add_source_path/$dateiname\" \n"
1703	# sleep 3
1704	# else
1705	if [[ $found = false ]]
1706	then
1707	found=true
1708	printf "\n\n *** following user file(s) added to the"
1709	printf " files to be translated:\n "
1710	fi
1711	printf "$dateiname "
1712	if [[ $silent == false ]]
1713	then
1714	sleep 0.5
1715	fi
1716
1717	fi
1718	done
1719	[[ $found = true ]] && printf "\n"
1720	cd - > /dev/null
1721	fi
1722	fi
1723
1724
1725	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1726	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1727	if [[ $restart_run != true && -n $package_list ]]
1728	then
1729
1730	cd $source_path
1731
1732	for package in $package_list
1733	do
1734
1735	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1736
1737	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1738	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1739	# LIEFERT
1740	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1741
1742
1743	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1744	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1745	for source_list_name in $package_source_list
1746	do
1747	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1748	then
1749
1750	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1751	ending=`echo $source_list_name \| cut -f2 -d.`
1752	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1753	then
1754	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1755	source_list="$source_list $source_list_name"
1756	fi
1757	fi
1758	done
1759	done
1760
1761	cd - > /dev/null
1762	fi
1763
1764
1765	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1766	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1767	# if [[ "$restart_run" != true ]]
1768	# then
1769	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1770	# if [[ ! -f $makefile ]]
1771	# then
1772	# printf "\n +++ file \"$makefile\" does not exist"
1773	# locat=make; exit
1774	# else
1775	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1776	# fi
1777	# fi
1778
1779	fi # do_compile=true
1780
1781
1782	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1783	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1784	if [[ $do_compile = true \|\| $create_executable_for_batch = true ]]
1785	then
1786
1787	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1788	# ZUSAMMENSETZEN
1789	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1790	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1791	then
1792	cpp_options="${cpp_options},-D__ibm=__ibm"
1793	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1794	then
1795	cpp_options="$cpp_options -D__nec"
1796	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1797	then
1798	cpp_options="$cpp_options -D__lc"
1799	else
1800	cpp_options="$cpp_options -D__$localhost"
1801	fi
1802
1803	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1804	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1805	then
1806	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1807	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1808	else
1809	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1810	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1811	fi
1812
1813	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1814	if [[ -n $package_list ]]
1815	then
1816	for package in $package_list
1817	do
1818	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1819	then
1820	if [[ $package != "dvrp_graphics+1PE" ]]
1821	then
1822	cpp_options="${cpp_options},-D__$package=__$package"
1823	else
1824	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1825	export use_seperate_pe_for_dvrp_output=true
1826	fi
1827	else
1828	if [[ $package != "dvrp_graphics+1PE" ]]
1829	then
1830	cpp_options="$cpp_options -D__$package"
1831	else
1832	cpp_options="$cpp_options -D__dvrp_graphics"
1833	export use_seperate_pe_for_dvrp_output=true
1834	fi
1835	fi
1836	done
1837	fi
1838
1839	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1840	if [[ -n $cpp_opts ]]
1841	then
1842	for popts in $cpp_opts
1843	do
1844	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1845	then
1846	cpp_options="${cpp_options},-D__$popts=__$popts"
1847	else
1848	cpp_options="$cpp_options -D__$popts"
1849	fi
1850	done
1851	fi
1852
1853	else
1854
1855
1856	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1857	if [[ $do_remote = false ]]
1858	then
1859	if [[ ! -f $executable ]]
1860	then
1861	printf "\n +++ executable file: $executable"
1862	printf "\n does not exist"
1863	locat=executable; exit
1864	fi
1865	fi
1866	fi
1867
1868
1869	# JOBMODUS FESTSTELLEN
1870	if [[ "$ENVIRONMENT" = BATCH ]]
1871	then
1872	jobmo=BATCH
1873	else
1874	jobmo=INTERACTIVE
1875	fi
1876
1877
1878	# no interactive runs on lctit
1879	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
1880	then
1881	printf "\n +++ no interactive runs allowed on host \"$host\" "
1882	printf "\n please submit batch job using mrun option \"-b\" \n"
1883	locat=normal; exit
1884	fi
1885
1886
1887	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1888	# DURCH BENUTZER ANDERWEITIG VEREINBART
1889	if [[ "$compiler_name" = "" ]]
1890	then
1891
1892	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
1893	locat=compiler_name; exit
1894
1895	fi
1896
1897
1898	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
1899	[[ $localhost = necriam ]] && compiler_name=mpif90
1900
1901
1902
1903	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
1904	kennung=$RANDOM
1905	if [[ "$tmp_user_catalog" = "" ]]
1906	then
1907	if [[ $localhost = ibmh ]]
1908	then
1909	tmp_user_catalog=$SCRATCH
1910	elif [[ $localhost = nech ]]
1911	then
1912	tmp_user_catalog=$WRKSHR
1913	else
1914	tmp_user_catalog=/tmp
1915	fi
1916	fi
1917	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
1918
1919
1920	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
1921	# BESTIMMEN
1922	if [[ "$tmp_data_catalog" = "" ]]
1923	then
1924	if [[ $localhost = nech ]]
1925	then
1926	tmp_data_catalog=$WRKSHR/mrun_restart_data
1927	else
1928	tmp_data_catalog=/tmp/mrun_restart_data
1929	fi
1930	fi
1931
1932
1933	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
1934	# ERSETZEN
1935	if [[ $do_remote = false && $do_compile = true \|\| $create_executable_for_batch = true ]]
1936	then
1937	eval fopts=\"$fopts\"
1938	eval lopts=\"$lopts\"
1939	fi
1940
1941
1942
1943	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
1944	fopts="$fopts $netcdf_inc $fftw_inc $dvr_inc"
1945	lopts="$lopts $netcdf_lib $fftw_lib $dvr_lib"
1946	ROPTS="$ropts"
1947	# if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcflow \|\| $host = lcxe6 \|\| $host = lcxt5m \|\| $host = lck \|\| $host = lckiaps \|\| $host = lckordi \|\| $host = lcsb \|\| $host ) && -n $numprocs ]]
1948	# then
1949	XOPT="-X $numprocs"
1950	# fi
1951
1952
1953
1954	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
1955	# GRAMM BENOETIGT
1956	done=false
1957	while [[ $done = false ]]
1958	do
1959	cputime=$cpumax
1960	if (( $cputime == 0 ))
1961	then
1962	if [[ $do_batch = true ]]
1963	then
1964	printf "\n +++ cpu-time is undefined"
1965	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
1966	printf "\n >>> "
1967	read cputime 1>/dev/null 2>&1
1968	else
1969	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
1970	fi
1971	else
1972	done=true
1973	fi
1974	cpumax=$cputime
1975	done
1976
1977	(( minuten = cputime / 60 ))
1978	(( sekunden = cputime - minuten * 60 ))
1979
1980
1981	# PRUEFEN DER KERNSPEICHERANFORDERUNG
1982	if [[ $do_batch = true ]]
1983	then
1984	done=false
1985	while [[ $done = false ]]
1986	do
1987	if (( memory == 0 ))
1988	then
1989	printf "\n +++ memory demand is undefined"
1990	printf "\n >>> Please type memory in MByte per process as INTEGER:"
1991	printf "\n >>> "
1992	read memory 1>/dev/null 2>&1
1993	else
1994	done=true
1995	fi
1996	done
1997	fi
1998
1999
2000	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
2001	if [[ $do_remote = true && -z $remote_username ]]
2002	then
2003	while [[ -z $remote_username ]]
2004	do
2005	printf "\n +++ username on remote host \"$host\" is undefined"
2006	printf "\n >>> Please type username:"
2007	printf "\n >>> "
2008	read remote_username
2009	done
2010	mc="$mc -u$remote_username"
2011	fi
2012
2013	# CHECK FOR INITIAL COMMANDS AFTER LOGIN
2014	if [[ "$login_init_cmd" != "" ]]
2015	then
2016	export init_cmds="${login_init_cmd};"
2017	fi
2018
2019
2020	# set module load command and export for subjob
2021	if [[ "$modules" != "" ]]
2022	then
2023	if [[ $host = lctit ]]
2024	then
2025	export module_calls=". $modules"
2026	else
2027	export module_calls="module load ${modules};"
2028	fi
2029	fi
2030
2031	# bugfix for wrong netcdf module and for netCDF4 usage in case of mpt
2032	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2033	then
2034	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
2035	then
2036	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
2037	fi
2038	# if [[ $(echo $module_calls \| grep -c mpt) != 0 ]]
2039	# then
2040	# export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/sgi/mpt/2011-02-07/lib:\$LD_LIBRARY_PATH;"
2041	# echo "*** module_calls = $module_calls"
2042	# fi
2043	fi
2044
2045
2046	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
2047	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2048	then
2049	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
2050	then
2051	mpilib=mpt
2052	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
2053	then
2054	mpilib=mvapich
2055	elif [[ $(echo $modules \| grep -c impi ) != 0 ]]
2056	then
2057	mpilib=impi
2058	fi
2059	fi
2060
2061
2062
2063	###########################################################################
2064	# HEADER-AUSGABE
2065	###########################################################################
2066
2067
2068	calltime=$(date)
2069	printf "\n"
2070	# [[ $silent = false ]] && clear
2071	printf "#------------------------------------------------------------------------# \n"
2072	printf "\| %-35s%35s \| \n" "$version" "$calltime"
2073	printf "\| \| \n"
2074	spalte1="called on:"; spalte2=$localhost_realname
2075	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2076	if [[ $local_compile = false ]]
2077	then
2078	if [[ $do_remote = true ]]
2079	then
2080	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2081	else
2082	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2083	fi
2084	else
2085	spalte1="compiling test only!"; spalte2=""
2086	fi
2087	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2088	if [[ -n $numprocs ]]
2089	then
2090	if [[ $run_coupled_model = false ]]
2091	then
2092	spalte1="number of PEs:"; spalte2=$numprocs
2093	else
2094	spalte1="number of PEs:"; spalte2="$numprocs (atmosphere: $numprocs_atmos, ocean: $numprocs_ocean)"
2095	fi
2096	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2097	fi
2098	if [[ -n $tasks_per_node ]]
2099	then
2100	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2101	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2102	fi
2103	if [[ $maximum_parallel_io_streams != $numprocs ]]
2104	then
2105	spalte1="max par io streams:"; spalte2="$maximum_parallel_io_streams"
2106	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2107	fi
2108	if [[ $use_openmp = true ]]
2109	then
2110	spalte1="threads per task:"; spalte2="$threads_per_task"
2111	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2112	fi
2113	printf "\| \| \n"
2114	if [[ $do_compile = true ]]
2115	then
2116	if [[ "$mopts" != "" ]]
2117	then
2118	spalte1="make options:"; spalte2=$(echo "$mopts" \| cut -c-45)
2119	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2120	zeile=$(echo "$mopts" \| cut -c46-)
2121	while [[ "$zeile" != "" ]]
2122	do
2123	spalte1=""
2124	spalte2=$(echo "$zeile" \| cut -c-45)
2125	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2126	zeile=$(echo "$zeile" \| cut -c46-)
2127	done
2128	fi
2129
2130	spalte1="cpp directives:"; spalte2=$(echo "$cpp_options" \| cut -c-45)
2131	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2132	zeile=$(echo "$cpp_options" \| cut -c46-)
2133	while [[ "$zeile" != "" ]]
2134	do
2135	spalte1=""
2136	spalte2=$(echo "$zeile" \| cut -c-45)
2137	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2138	zeile=$(echo "$zeile" \| cut -c46-)
2139	done
2140
2141	spalte1="compiler options:"; spalte2=$(echo "$fopts" \| cut -c-45)
2142	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2143	zeile=$(echo "$fopts" \| cut -c46-)
2144	while [[ "$zeile" != "" ]]
2145	do
2146	spalte1=""
2147	spalte2=$(echo "$zeile" \| cut -c-45)
2148	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2149	zeile=$(echo "$zeile" \| cut -c46-)
2150	done
2151
2152	spalte1="linker options:"; spalte2=$(echo "$lopts" \| cut -c-45)
2153	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2154	zeile=$(echo "$lopts" \| cut -c46-)
2155	while [[ "$zeile" != "" ]]
2156	do
2157	spalte1=""
2158	spalte2=$(echo "$zeile" \| cut -c-45)
2159	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2160	zeile=$(echo "$zeile" \| cut -c46-)
2161	done
2162
2163	spalte1="modules to be load:"; spalte2=$(echo "$modules" \| cut -c-45)
2164	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2165	zeile=$(echo "$modules" \| cut -c46-)
2166	while [[ "$zeile" != "" ]]
2167	do
2168	spalte1=""
2169	spalte2=$(echo "$zeile" \| cut -c-45)
2170	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2171	zeile=$(echo "$zeile" \| cut -c46-)
2172	done
2173
2174	spalte1="main program:"; spalte2=$mainprog
2175	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2176	else
2177	spalte1=executable:; spalte2=$executable
2178	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2179	fi
2180	printf "\| \| \n"
2181	spalte1="base name of files:"; spalte2=$fname
2182	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2183	if [[ $fname != $afname ]]
2184	then
2185	spalte1="base name of input files:"; spalte2=$afname
2186	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2187	fi
2188	spalte1="INPUT control list:"; spalte2=$(echo $input_list)
2189	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2190	spalte1="OUTPUT control list:"; spalte2=$(echo $output_list)
2191	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2192
2193	if [[ "$ocean_file_appendix" = true ]]
2194	then
2195	printf "\| %-35s%-35s \| \n" "suffix \"_O\" is added to local files" " "
2196	fi
2197
2198	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2199	then
2200	spalte1="memory demand / PE":; spalte2="$memory MB"
2201	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2202	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2203	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2204	fi
2205
2206	if [[ $do_compile = true ]]
2207	then
2208	printf "\| \| \n"
2209	printf "\| Files to be compiled: \| \n"
2210	zeile=$source_list
2211	while [[ "$zeile" != "" ]]
2212	do
2213	linestart=$(echo $zeile \| cut -c-70)
2214	printf "\| %-70s \| \n" "$linestart"
2215	zeile=$(echo "$zeile" \| cut -c71-)
2216	done
2217	fi
2218	printf "#------------------------------------------------------------------------#"
2219
2220
2221
2222	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2223	if [[ $do_trace = true ]]
2224	then
2225	(( i = 0 ))
2226	while (( i < iin ))
2227	do
2228	(( i = i + 1 ))
2229	if (( i == 1 ))
2230	then
2231	printf "\n\n >>> INPUT-file assignments:\n"
2232	fi
2233	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2234	done
2235	(( i = 0 ))
2236	while (( i < iout ))
2237	do
2238	(( i = i + 1 ))
2239	if (( i == 1 ))
2240	then
2241	printf "\n\n >>> OUTPUT-file assignments:\n"
2242	fi
2243	printf "\n ${localout[$i]} : ${pathout[$i]}"
2244	done
2245	(( i = 0 ))
2246	while (( i < iic ))
2247	do
2248	(( i = i + 1 ))
2249	if (( i == 1 ))
2250	then
2251	printf "\n\n >>> INPUT-commands:\n"
2252	fi
2253	printf "\n ${in_command[$i]}"
2254	done
2255	(( i = 0 ))
2256	while (( i < ioc ))
2257	do
2258	(( i = i + 1 ))
2259	if (( i == 1 ))
2260	then
2261	printf "\n\n >>> OUTPUT-commands:\n"
2262	fi
2263	printf "\n ${out_command[$i]}"
2264	done
2265	fi
2266
2267
2268	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2269	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2270	then
2271	antwort=dummy
2272	printf "\n\n"
2273	printf " >>> everything o.k. (y/n) ? "
2274	while read antwort
2275	do
2276	if [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2277	then
2278	printf " >>> everything o.k. (y/n) ? "
2279	else
2280	break
2281	fi
2282	done
2283	if [[ $antwort = n \|\| $antwort = N ]]
2284	then
2285	locat=user_abort; (( iec = 0 )); exit
2286	fi
2287	if [[ $do_batch = true ]]
2288	then
2289	printf " >>> batch-job will be created and submitted"
2290	else
2291	if [[ $local_compile = false ]]
2292	then
2293	printf " >>> MRUN will now continue to execute on this machine"
2294	else
2295	printf " >>> a test compilation will now be carried out on this machine"
2296	fi
2297	fi
2298	fi
2299
2300
2301	# PERFORM PARAMETER FILE CHECK (COUPLED RUNS ARE NOT SUPPORTED YET)
2302	# DEFINE VARIABLES FOR FREQUENTLY USED DIRECTORIES
2303	check_depository="${working_directory}/trunk/UTIL"
2304	check_sources="${working_directory}/tmp_check_namelist_files"
2305	skip_check=false
2306
2307	# CHECK IF NAMELIST_FILE_CHECK HAS BEEN COMPILED SUCCESSFULLY
2308	if [[ ! -f $check_depository/check_namelist_files.tar ]]
2309	then
2310	skip_check=true
2311	reason="run on remote host or parameter file check has not been compiled."
2312	fi
2313	if [[ ! -f $PALM_BIN/check_namelist_files.x ]]
2314	then
2315	skip_check=true
2316	reason="parameter file check has not been compiled."
2317	fi
2318
2319	# CHECK FOR PARALLEL RUN; OTHERWISE SKIP CHECK
2320	if [[ "$cond1" != "parallel" && "$cond2" != "parallel" ]]
2321	then
2322	skip_check=true
2323	reason="serial run."
2324	fi
2325
2326	# ONLY PERFORM CHECK IF -z OPTION IS NOT SET, NO RESTART RUN IS CARRIED OUT
2327	# AND IF THE EXECUTION HOST IS THE LOCAL HOST
2328	# ATTENTION: THIS ROUTINE DOES NOT WORK IF THE COMPILER ON THE LOCAL HOST
2329	# DIFFERS FROM THE COMPILER ON THE REMOTE HOST
2330	if [[ $check_namelist_files == false ]]
2331	then
2332	skip_check=true
2333	reason="-z option set."
2334	fi
2335
2336	if [[ $fromhost != $localhost ]]
2337	then
2338	skip_check=true
2339	reason="submitting host is local host."
2340	fi
2341
2342	if [[ $run_coupled_model == true ]]
2343	then
2344	skip_check=true
2345	reason="coupled run."
2346	fi
2347
2348	if [[ $restart_run == true ]]
2349	then
2350	skip_check=true
2351	reason="restart run."
2352	fi
2353
2354	# SKIP CHECK IN CASE OF RESTART RUN: CHECK WHETHER THE LAST CHAR IS "f" IN PARIN
2355	(( last_char_int = `echo $filename_input \| wc -c` - 1 ))
2356	last_char=`echo $filename_input \| cut -c $last_char_int`
2357	if [[ "$last_char" == "f" ]]
2358	then
2359	skip_check=true
2360	reason="restart run."
2361	fi
2362
2363	if [[ $skip_check == false ]]
2364	then
2365	tmp_check=${working_directory}/tmp_check
2366
2367	# GET TOPOGRAPHY PARAMETER FILE SUFFIX (USUALLY "_TOPO"). THIS FILE IS
2368	# NOT NECESSARILY REQUIRED
2369	line=""
2370	found=false
2371	grep "TOPOGRAPHY_DATA" $config_file > $tmp_check
2372	while read line1
2373	do
2374	line="$line1"
2375	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2376	then
2377	topo_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2378	found=true
2379	fi
2380	done < $tmp_check
2381
2382	if [[ $found = false ]]
2383	then
2384	printf "\n +++ no TOPOGRAPHY list entry found in the configuration file."
2385	fi
2386
2387	# GET NUDGING PARAMETER FILE SUFFIX (USUALLY "_NUDGE"). THIS FILE IS
2388	# NOT NECESSARILY REQUIRED
2389	line=""
2390	found=false
2391	grep "NUDGING_DATA" $config_file > $tmp_check
2392	while read line1
2393	do
2394	line="$line1"
2395	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2396	then
2397	nudge_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2398	found=true
2399	fi
2400	done < $tmp_check
2401
2402	if [[ $found = false ]]
2403	then
2404	printf "\n +++ no NUDGING list entry found in the configuration file."
2405	fi
2406
2407	# GET LARGE SCALE FORCING PARAMETER FILE SUFFIX (USUALLY "_LSF"). THIS FILE IS
2408	# NOT NECESSARILY REQUIRED
2409	line=""
2410	found=false
2411	grep "LSF_DATA" $config_file > $tmp_check
2412	while read line1
2413	do
2414	line="$line1"
2415	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2416	then
2417	lsf_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2418	found=true
2419	fi
2420	done < $tmp_check
2421
2422	if [[ $found = false ]]
2423	then
2424	printf "\n +++ no LSF list entry found in the configuration file."
2425	fi
2426
2427	rm -rf ${working_directory}/tmp_check
2428
2429	# CHECK IF THE P3DF FILE MUST BE CHECKED
2430	for item in $input_list
2431	do
2432	if [[ "$item" == "restart" ]]
2433	then
2434	check_restart=1
2435	else
2436	check_restart=0
2437	fi
2438	done
2439
2440	# ERROR IF NO PARAMETER FILE WAS FOUND, OTHERWISE PROCEED
2441	if [[ (! -f $filename_input) && ( "$filename_input" != "" ) ]]
2442	then
2443	printf "\n\n +++ ERROR: parameter file ($filename_input) not found."
2444	locat=check_namelist; exit
2445	fi
2446
2447	# CHECK IF THE RESTART PARAMETER FILE EXISTS (IF NECESSARY)
2448	if [[ $check_restart == 1 ]]
2449	then
2450
2451	filenamef="${filename_input}f"
2452	if [[ ! -f $filenamef ]]
2453	then
2454	printf "\n\n +++ WARNING: restart parameter file ($filenamef) is missing."
2455	check_restart=0
2456	answer=dummy
2457	printf "\n\n"
2458
2459	if [[ $silent == false ]]
2460	then
2461	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2462	do
2463	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2464	read answer
2465	done
2466	if [[ $answer = a \|\| $answer = A ]]
2467	then
2468	printf "\n +++ Aborting...."
2469	locat=normal; exit
2470	fi
2471	fi
2472	else
2473	check_restart=1
2474	fi
2475	fi
2476
2477	# CREATE TEMPORARY SOURCES_FOR_CHECK PATH
2478	mkdir $check_sources
2479	cd $check_sources
2480
2481
2482	# CHECK FOR USER CODE, OTHERWISE USE THE PRECOMPILED CHECK_NAMELIST_FILES.X
2483	if [[ -d $add_source_path ]]
2484	then
2485	printf "\n\n *** copying files from $check_depository"
2486	cp $check_depository/check_namelist_files.tar ./
2487
2488	printf "\n\n *** untar of makefile and source files in $check_sources"
2489	tar -xf check_namelist_files.tar > /dev/null 2>&1
2490
2491	printf "\n\n *** adding user code."
2492	cp $add_source_path/* ./
2493	touch check_namelist_files.f90
2494
2495	# GET COMPILER OPTIONS AND PERFORM MAKE
2496	printf "\n\n *** compiling code if necessary...\n"
2497
2498	# workaround for batch jobs on local machine (lcxe6)
2499	if [[ $do_batch == true && $do_remote == false ]]
2500	then
2501	eval $init_cmds
2502	fi
2503
2504	# GET CHECK OPTIONS
2505	line=""
2506	found=false
2507
2508	grep "$localhost" ${base_directory}/${config_file} \| grep "%cpp_options" > $tmp_check
2509
2510	while read line1
2511	do
2512
2513	if [[ $(echo $line1 \| cut -d" " -s -f3-) = "$localhost" ]]
2514	then
2515	line="$line1"
2516	fi
2517
2518	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2519	then
2520	# EVENTUELLE DOPPELPUNKTE AUS OPTIONSSTRING UND ALLE -D ENTFERNEN
2521	line="$line "
2522	copts_check=`echo $line \| cut -d" " -s -f2 \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g' \| sed 's/-D[^ ]* //g' \| sed 's/ -D.*//g'`
2523	found=true
2524	fi
2525
2526	done < $tmp_check
2527	copts_check="$copts_check -D__check -D__parallel"
2528
2529	make -f Makefile_check F90=$compiler_name_ser COPT="$copts_check"
2530
2531	# GET MAKE OUTPUT
2532	if [[ $? != 0 ]]
2533	then
2534	printf "\n +++ error during make."
2535	answer=dummy
2536	printf "\n\n"
2537	if [[ $silent == false ]]
2538	then
2539	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2540	do
2541	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2542	read answer
2543	done
2544	if [[ $answer = a \|\| $answer = A ]]
2545	then
2546	printf "\n +++ Aborting..."
2547	rm -rf $check_sources
2548	locat=normal; exit
2549	else
2550	skip_check=true
2551	fi
2552	else
2553	skip_check=true
2554	fi
2555	fi
2556	else
2557	cp $PALM_BIN/check_namelist_files.x ./
2558	fi
2559
2560	cp $filename_input ./PARIN
2561	if [[ $check_restart == 1 ]]
2562	then
2563	cp $filenamef ./PARINF
2564	fi
2565
2566	if [[ -f ${pathname}/${fname}${topo_suffix} && $skip_check == false ]]
2567	then
2568	printf "\n *** adding topography data"
2569	cp ${pathname}/${fname}${topo_suffix} ./TOPOGRAPHY_DATA
2570
2571	# IN CASE OF TOPOGRAPHY AND HIGH GRID POINT NUMBERS, THE STACK SIZE
2572	# MUST BE INCREASED. THIS IS DUE TO THE ARRAY nzb_local AND topo_height,
2573	# WHICH REQUIRE SUFFICIENT MEMORY
2574	ulimit -s unlimited
2575	fi
2576
2577	if [[ -f ${pathname}/${fname}${nudge_suffix} && $skip_check == false ]]
2578	then
2579	printf "\n *** adding nudging data"
2580	cp ${pathname}/${fname}${nudge_suffix} ./NUDGING_DATA
2581	fi
2582
2583	if [[ -f ${pathname}/${fname}${lsf_suffix} && $skip_check == false ]]
2584	then
2585	printf "\n *** adding large scale forcing data"
2586	cp ${pathname}/${fname}${lsf_suffix} ./LSF_DATA
2587	fi
2588
2589	# CREATE ENVPAR FILE, WHICH IS NEEDED BY CHECK_NAMELIST_FILES.X
2590	cat > ENVPAR << %%END%%
2591	&envpar run_identifier = '$fname', host = '$host',
2592	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2593	maximum_parallel_io_streams = $maximum_parallel_io_streams,
2594	maximum_cpu_time_allowed = ${cpumax}.,
2595	revision = '$global_revision',
2596	local_dvrserver_running = $local_dvrserver_running /
2597
2598	%%END%%
2599
2600	# SAFETY CHECK: ONLY PROCEED IF THE PARAMETER CHECK PROGRAM WAS PROPERLY COMPILED
2601	if [[ ! -f check_namelist_files.x && $skip_check == false ]]
2602	then
2603	printf "\n +++ WARNING: check_namelist_files.x not found."
2604	answer=dummy
2605	printf "\n\n"
2606
2607	if [[ $silent == false ]]
2608	then
2609	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2610	do
2611	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2612	read answer
2613	done
2614	if [[ $answer = a \|\| $answer = A ]]
2615	then
2616	printf "\n +++ Aborting..."
2617	rm -rf $check_sources
2618	locat=normal; exit
2619	else
2620	printf "\n *** skipping parameter file check."
2621	fi
2622	fi
2623
2624	elif [[ $skip_check == false ]]
2625	then
2626	# STARTING THE PARAMETER FILE CHECK
2627	printf "\n\n *** starting parameter file check..."
2628
2629	# CHECKING THE P3D FILE
2630	printf "\n\n (1) checking $filename_input"
2631	echo "$numprocs 0 0" > VARIN
2632	errors=`./check_namelist_files.x < VARIN 2>&1`
2633
2634	check_error=false
2635	if [[ "$errors" == "" ]]
2636	then
2637	printf " --> o.k."
2638	else
2639	printf " --> failed."
2640	check_error=true
2641	printf "\n\n $errors"
2642	fi
2643
2644	# CHECKING THE PD3F FILE IF NECESSARY
2645	if [[ $check_restart == 1 && $check_error == false ]]
2646	then
2647	printf "\n\n (2) checking $filenamef"
2648
2649	# FIRST CHECK IF INITIALIZING_ACTIONS="READ_RESTART_DATA" IS SET
2650	# IN &INIPAR LIST
2651	found=false
2652	cat PARINF \| while read line
2653	do
2654	line=$(echo $line\|sed 's/ //g')
2655	if [[ $line == "&inipar" ]]
2656	then
2657	start_search=true
2658	fi
2659
2660	if [[ $start_search == true ]]
2661	then
2662	if [[ $line == "initializing_actions='read_restart_data'" ]]
2663	then
2664	found=true
2665	break
2666	fi
2667	fi
2668
2669	if [[ $line == "/" ]]
2670	then
2671	start_search=false
2672	fi
2673
2674	done
2675
2676	if [[ $found = false ]]
2677	then
2678	printf "\n\n +++ ERROR: initializing_actions = 'read_restart_data' not found"
2679	printf "\n in &inipar list in $fname$p3df_suffix."
2680	rm -rf $check_sources
2681	locat=check_namelist; exit
2682	fi
2683
2684	# READ max_user_pr FROM FILES
2685	if [[ -f parin_for_check ]]
2686	then
2687	read max_pr_user < parin_for_check
2688	else
2689	max_user_pr=0
2690	fi
2691
2692	echo "$numprocs 1 $max_pr_user" > VARIN
2693	errors=`./check_namelist_files.x < VARIN 2>&1`
2694
2695	if [[ "$errors" == "" ]]
2696	then
2697	printf " --> o.k."
2698	else
2699	printf " --> failed."
2700	check_error=true
2701	printf "\n\n $errors"
2702	fi
2703	fi
2704
2705	# REPORT ERRORS AND CONTINUE/EXIT
2706	if [[ $check_error == true ]]
2707	then
2708	printf "\n +++ errors found in the parameter file!\n"
2709	answer=dummy
2710	printf "\n\n"
2711
2712	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2713	do
2714	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2715	read answer
2716	done
2717
2718	if [[ $answer = a \|\| $answer = A ]]
2719	then
2720	printf "\n +++ Aborting..."
2721	rm -rf $check_sources
2722	locat=normal; exit
2723	fi
2724	else
2725	printf "\n\n *** parameter file(s) seem(s) to be o.k.\n"
2726	fi
2727	rm -rf $check_sources
2728	fi
2729	else
2730	printf "\n\n +++ skipping parameter file check due to following reason: $reason \n"
2731	fi
2732
2733	# DELETE TEMPORARY DIRECTORY AND FINISH NAMELIST FILE CHECK
2734	rm -rf $check_sources
2735	cd $working_directory
2736
2737
2738	# DETERMINE PATH FOR MAKE DEPOSITORY
2739	if [[ $do_batch = false \|\| $create_executable_for_batch = true ]]
2740	then
2741
2742	line=""
2743	grep "%depository_path" $config_file > tmp_mrun
2744	while read line
2745	do
2746	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2747	then
2748	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2749	then
2750	global_depository_path=`echo $line \| cut -d" " -s -f2`
2751	fi
2752	fi
2753	done < tmp_mrun
2754
2755	line=""
2756	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2757	while read line
2758	do
2759	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2760	then
2761	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2762	then
2763	local_depository_path=`echo $line \| cut -d" " -s -f2`
2764	fi
2765	fi
2766	done < tmp_mrun
2767
2768	if [[ "$local_depository_path" = "" ]]
2769	then
2770	if [[ "$global_depository_path" != "" ]]
2771	then
2772	local_depository_path=$global_depository_path
2773	else
2774	printf "\n\n +++ no depository path found in configuration file"
2775	printf "\n for local host \"$localhost\" "
2776	printf "\n please set \"\%depository_path\" in configuration file\n"
2777	locat=config_file; exit
2778	fi
2779	fi
2780	eval local_depository_path=$local_depository_path
2781	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2782	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2783
2784
2785	basename=`echo $mainprog \| cut -f1 -d"."`
2786	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2787	if [[ ! -f $make_depository ]]
2788	then
2789	printf "\n"
2790	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2791	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2792	fi
2793
2794	fi
2795
2796
2797	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2798	# CHENDE AKTIONEN DURCHGEFUEHRT
2799	if [[ $do_batch = false ]]
2800	then
2801
2802
2803	# TEMPORAEREN KATALOG ERZEUGEN
2804	mkdir -p $TEMPDIR
2805	chmod go+rx $TEMPDIR
2806	tmpcreate=true
2807
2808
2809	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2810	# TEMPORAERES VERZEICHNIS KOPIEREN
2811	if [[ $do_compile = true ]]
2812	then
2813
2814	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2815	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2816	if [[ $localhost = nech ]]
2817	then
2818	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2819	if mkdir -p $TEMPDIR_COMPILE
2820	then
2821	printf "\n *** \"$TEMPDIR_COMPILE\" "
2822	printf "\n is generated as temporary directory for cross compiling\n"
2823	else
2824	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2825	printf "\n needed for cross compilation failed"
2826	locat=compile
2827	exit
2828	fi
2829	else
2830	TEMPDIR_COMPILE=$TEMPDIR
2831	fi
2832
2833	cp $make_depository $TEMPDIR_COMPILE
2834	cd $TEMPDIR_COMPILE
2835	tar -xf $make_depository > /dev/null 2>&1
2836	cd - > /dev/null
2837
2838	# DUE TO UNKNOWN REASONS, COPY WITH cp COMMAND CREATES CORRUPT
2839	# FILES ON CRAY XC30 SYSTEMS (HLRN III), rsync IS USED INSTEAD
2840	rsync -av -t SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE > /dev/null
2841
2842	else
2843
2844	cp $executable ${TEMPDIR}/a.out
2845
2846	fi
2847
2848
2849	# WECHSEL IN TEMPORAEREN KATALOG
2850	cd $TEMPDIR
2851	printf "\n *** changed to temporary directory: $TEMPDIR"
2852
2853
2854	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2855	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2856	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2857	# ERMITTELN
2858	(( i = 0 ))
2859	while (( i < iout ))
2860	do
2861	(( i = i + 1 ))
2862	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2863	then
2864	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2865	else
2866	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2867	fi
2868	done
2869
2870
2871	# IF REQUIRED, START WITH COMPILING ACTIONS
2872	if [[ $do_compile = true ]]
2873	then
2874
2875
2876	if [[ -f a.out ]]
2877	then
2878
2879	# EXECUTABLE WAS CREATED DURING INTERACTIVE CALL OF MRUN
2880	printf "\n\n\n *** executable a.out found"
2881	printf "\n no compilation required \n"
2882
2883	else
2884
2885	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2886	printf "\n\n\n *** compilation starts \n$striche\n"
2887	printf " *** compilation with make using following options:\n"
2888	printf " make depository: $make_depository"
2889	if [[ "$mopts" != "" ]]
2890	then
2891	printf " make options: $mopts\n"
2892	fi
2893	printf " compilername: $compiler_name\n"
2894	printf " compiler options: $fopts\n"
2895	printf " preprocessor directives: $cpp_options \n"
2896	printf " linker options: $lopts \n"
2897	if [[ "$modules" != "" ]]
2898	then
2899	printf " modules to be load: $modules \n"
2900	fi
2901	printf " source code files: $source_list \n"
2902
2903	if [[ $localhost = nech ]]
2904	then
2905	ssh $SSH_PORTOPT 136.172.44.192 -l $usern "$init_cmds $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2906	cp $TEMPDIR_COMPILE/a.out .
2907	[[ $? != 0 ]] && compile_error=true
2908	rm -rf $TEMPDIR_COMPILE
2909	elif [[ $localhost = ibmh ]]
2910	then
2911	printf " compiler is called via ssh on \"plogin1\" \n"
2912	ssh $SSH_PORTOPT plogin1 -l $usern "$init_cmds export PATH=/sw/ibm/xlf/13.1.0.8/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2913	[[ ! -f a.out ]] && compile_error=true
2914	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2915	elif [[ $localhost = lcsgib ]]
2916	then
2917	printf " compiler is called via ssh on \"bicegate0\" \n"
2918	ssh $SSH_PORTOPT bicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2919	[[ ! -f a.out ]] && compile_error=true
2920	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2921	elif [[ $localhost = lcsgih ]]
2922	then
2923	printf " compiler is called via ssh on \"hicegate0\" \n"
2924	ssh $SSH_PORTOPT hicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2925	[[ ! -f a.out ]] && compile_error=true
2926	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2927	elif [[ $localhost = lcflow ]]
2928	then
2929	printf " compiler is called via ssh on \"flow\" \n"
2930	/usr/bin/ssh $SSH_PORTOPT flow02.hpc.uni-oldenburg.de -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2931	check_for_file=`/usr/bin/ssh $SSH_PORTOPT flow02.hpc.uni-oldenburg.de -l $usern "ls $TEMPDIR/a.out 2> /dev/null"`
2932	[[ "$check_for_file" = "" ]] && compile_error=true
2933	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2934	elif [[ $localhost = lccrayb \|\| $localhost = lccrayf ]]
2935	then
2936	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2937	else
2938	[[ "$init_cmds" != "" ]] && eval $init_cmds
2939	[[ "$module_calls" != "" ]] && eval $module_calls
2940	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2941	fi
2942
2943	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2944	then
2945	printf "\n +++ error occured while compiling or linking"
2946	locat=compile
2947
2948	exit
2949	else
2950	printf "$striche\n *** compilation finished \n"
2951	fi
2952
2953	fi
2954
2955	fi
2956
2957
2958	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2959	if [[ $local_compile = true ]]
2960	then
2961	cd $HOME
2962	rm -rf $TEMPDIR
2963	locat=local_compile; exit
2964	fi
2965
2966
2967	# BEREITSTELLEN DER INPUT-DATEIEN
2968	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2969	(( i = 0 ))
2970	while (( i < iin ))
2971	do
2972	(( i = i + 1 ))
2973	if (( i == 1 ))
2974	then
2975	printf "\n\n *** providing INPUT-files:\n$striche"
2976	fi
2977
2978
2979	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2980	if [[ "${transin[$i]}" = unavailable ]]
2981	then
2982	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2983	then
2984	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2985	printf "\n is not available!"
2986	else
2987	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2988	printf "\n is not available!"
2989	fi
2990	continue
2991	fi
2992
2993	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2994	files_for_pes=false; datentyp=file
2995	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2996	then
2997	files_for_pes=true; datentyp=directory
2998	actionin[$i]=""
2999	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
3000	then
3001	actionin[$i]=""
3002	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
3003	then
3004	files_for_pes=true; datentyp=directory
3005	actionin[$i]="ar"
3006	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
3007	then
3008	actionin[$i]="ar"
3009	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
3010	then
3011	files_for_pes=true; datentyp=directory
3012	actionin[$i]="fl"
3013	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
3014	then
3015	actionin[$i]="fl"
3016	fi
3017
3018	if [[ $files_for_pes = true ]]
3019	then
3020	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
3021	else
3022	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
3023	fi
3024
3025	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
3026	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
3027	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
3028	# SERVER ZU HOLEN
3029	if [[ "${actionin[$i]}" = fl ]]
3030	then
3031	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
3032	if [[ $files_for_pes = false ]]
3033	then
3034	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
3035	then
3036	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
3037	got_tmp[$i]=true
3038	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
3039	then
3040	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
3041	printf "\n *** trying to use backup copy in \"$WORK\" "
3042	cp $WORK/${frelin[$i]} ${localin[$i]}
3043	else
3044	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
3045	printf "\n or \"$tmp_data_catalog\" does not exist!"
3046	printf "\n *** trying to get copy from archive"
3047	actionin[$i]=ar
3048	fi
3049	else
3050	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
3051	then
3052	mkdir ${localin[$i]}
3053	cd $tmp_data_catalog/${frelin[$i]}
3054	for file in $(ls *)
3055	do
3056	ln $file $TEMPDIR/${localin[$i]}
3057	done
3058	cd $TEMPDIR
3059	got_tmp[$i]=true
3060	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
3061	then
3062	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
3063	printf "\n *** trying to use backup copy in \"$WORK\" "
3064	cp -r $WORK/${frelin[$i]} ${localin[$i]}
3065	else
3066	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
3067	printf "\n or \"$tmp_data_catalog\" does not exist!"
3068	printf "\n *** trying to get copy from archive"
3069	actionin[$i]=ar
3070	fi
3071	fi
3072	fi
3073
3074
3075	# DATEI LIEGT AUF ARCHIV-SERVER
3076	if [[ "${actionin[$i]}" = ar ]]
3077	then
3078
3079	if [[ $files_for_pes = false ]]
3080	then
3081	printf "\n file will be restored from archive-system ($archive_system)!"
3082	else
3083	printf "\n directory will be restored from archive-system ($archive_system)!"
3084	fi
3085
3086	file_restored=false
3087
3088	if [[ $archive_system = asterix ]]
3089	then
3090	do_stagein=true
3091	(( stagein_anz = 0 ))
3092	while [[ $do_stagein = true ]]
3093	do
3094	if [[ $files_for_pes = false ]]
3095	then
3096	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
3097	else
3098	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
3099	fi
3100	cat STAGEIN_OUTPUT
3101	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
3102	then
3103	file_restored=true
3104	do_stagein=false
3105	else
3106	(( stagein_anz = stagein_anz + 1 ))
3107	if (( stagein_anz == 10 ))
3108	then
3109	printf "\n +++ stagein stoped after 10 tries"
3110	locat=stage
3111	exit
3112	fi
3113	printf "\n +++ restoring from archive failed, trying again:"
3114	sleep 900
3115	fi
3116	done
3117	elif [[ $archive_system = DMF ]]
3118	then
3119	if [[ $files_for_pes = false ]]
3120	then
3121	printf "\n +++ restoring of single files impossible with $archive_system !\n"
3122	locat=DMF
3123	exit
3124	else
3125	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
3126	cp -r $ARCHIVE/${frelin[$i]} $PWD
3127	file_restored=true
3128	fi
3129	elif [[ $archive_system = tivoli ]]
3130	then
3131	if [[ $files_for_pes = false ]]
3132	then
3133	if [[ $localhost = lcsgih ]]
3134	then
3135	ssh $SSH_PORTOPT $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3136	else
3137	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3138	fi
3139	else
3140	(( inode = 0 ))
3141	while (( inode < nodes ))
3142	do
3143	if [[ $localhost = lcsgih ]]
3144	then
3145	ssh $SSH_PORTOPT $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3146	else
3147	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3148	fi
3149	(( inode = inode + 1 ))
3150	done
3151	fi
3152	file_restored=true
3153	elif [[ $archive_system = ut ]]
3154	then
3155	if [[ $files_for_pes = false ]]
3156	then
3157	cp $UT/${frelin[$i]} .
3158	else
3159	(( inode = 0 ))
3160	while (( inode < nodes ))
3161	do
3162	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
3163	(( inode = inode + 1 ))
3164	done
3165	fi
3166	file_restored=true
3167	else
3168	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
3169	locat=rearchive
3170	exit
3171	fi
3172
3173	if [[ $file_restored = true ]]
3174	then
3175
3176	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
3177	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
3178	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
3179	if [[ $files_for_pes = false ]]
3180	then
3181	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
3182	else
3183	mkdir $tmp_data_catalog/${frelin[$i]}
3184	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
3185	fi
3186	got_tmp[$i]=true
3187
3188	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
3189	mv ${frelin[$i]} ${localin[$i]}
3190
3191	fi
3192	fi
3193
3194
3195	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
3196	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
3197	then
3198
3199	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
3200	then
3201
3202	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
3203	printf "\n file will be provided for $numprocs processors"
3204	mkdir ${localin[$i]}
3205	ival=$numprocs
3206	(( ii = 0 ))
3207	while (( ii <= ival-1 ))
3208	do
3209	if (( ii < 10 ))
3210	then
3211	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
3212	elif (( ii < 100 ))
3213	then
3214	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
3215	elif (( ii < 1000 ))
3216	then
3217	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
3218	else
3219	cp ${absnamein[$i]} ${localin[$i]}/_$ii
3220	fi
3221	(( ii = ii + 1 ))
3222	done
3223
3224	else
3225
3226	if [[ $files_for_pes = true ]]
3227	then
3228
3229	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
3230	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
3231	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
3232	# PER MOVE UMBENANNT WERDEN
3233	printf "\n providing $numprocs files for the respective processors"
3234	mkdir ${localin[$i]}
3235	if [[ $link_local_input = true ]]
3236	then
3237	printf " using ln -f\n"
3238	cd ${absnamein[$i]}
3239	for file in $(ls *)
3240	do
3241	ln -f $file ${localin[$i]}
3242	done
3243	cd $TEMPDIR
3244	fi
3245	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
3246	if [[ ! -f "${localin[$i]}/_0000" ]]
3247	then
3248	if [[ $link_local_input = true ]]
3249	then
3250	printf " ln failed for .../_0000, using cp...\n"
3251	fi
3252	cp -r ${absnamein[$i]}/* ${localin[$i]}
3253	fi
3254
3255	else
3256	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
3257	if [[ $link_local_input = true ]]
3258	then
3259	printf " using ln -f\n"
3260	ln -f ${absnamein[$i]} ${localin[$i]}
3261	fi
3262	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
3263	if [[ ! -f "${localin[$i]}" ]]
3264	then
3265	if [[ $link_local_input = true ]]
3266	then
3267	printf " ln failed, using cp...\n"
3268	fi
3269	cp ${absnamein[$i]} ${localin[$i]}
3270	fi
3271	fi
3272	fi
3273	fi
3274
3275	done
3276	if (( i != 0 ))
3277	then
3278	printf "\n$striche\n *** all INPUT-files provided \n"
3279	fi
3280
3281
3282	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
3283	(( i = 0 ))
3284	while (( i < iic ))
3285	do
3286	(( i = i + 1 ))
3287	if (( i == 1 ))
3288	then
3289	printf "\n\n *** execution of INPUT-commands:\n$striche"
3290	fi
3291	printf "\n >>> ${in_command[$i]}"
3292	eval ${in_command[$i]}
3293	if (( i == iic ))
3294	then
3295	printf "\n$striche\n"
3296	fi
3297	done
3298
3299
3300	# VERBLEIBENDE CPU-ZEIT BERECHNEN
3301	cpurest=${cpumax}.
3302
3303
3304	# START DVR STREAMING SERVER
3305	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3306	then
3307	if [[ "$dvr_server" != "" ]]
3308	then
3309
3310	printf "\n\n *** preparing the dvr streaming server configuration file"
3311
3312	# Check, if a dvr server is already running
3313	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
3314	if [[ "$running_dvrserver_id" != "" ]]
3315	then
3316
3317	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
3318	printf "\n This server is used instead starting a new one!"
3319	printf "\n If required, script \"process_dvr_output\" has to be run manually."
3320
3321	else
3322
3323	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
3324	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
3325	then
3326	cp ${PALM_BIN}/.dvrserver.config .
3327
3328	# Entering the BASEDIR, UID and GID into this file
3329	user_id=`id -u`
3330	group_id=`id -g`
3331	# & is needed as seperator, because TEMPDIR contains /
3332	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
3333	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
3334	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
3335	mv .dvrserver.3 .dvrserver.config
3336	rm .dvrserver.1 .dvrserver.2
3337
3338	# Start dvr server in background, get his id and print on terminal
3339	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
3340	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
3341	printf "\n *** streaming server with id=$dvrserver_id is started in background"
3342	local_dvrserver_running=.TRUE.
3343	else
3344	printf "\n +++ missing file \".dvrserver.config\" in directory:"
3345	printf "\n \"$PALM_BIN\" "
3346	locat=dvr
3347	exit
3348	fi
3349
3350	fi
3351
3352	else
3353	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
3354	fi
3355	fi
3356
3357
3358	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
3359	# LESEN VON PALM)
3360	cat > ENVPAR << %%END%%
3361	&envpar run_identifier = '$fname', host = '$localhost',
3362	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
3363	maximum_parallel_io_streams = $maximum_parallel_io_streams,
3364	maximum_cpu_time_allowed = ${cpumax}.,
3365	revision = '$global_revision',
3366	local_dvrserver_running = $local_dvrserver_running /
3367
3368	%%END%%
3369
3370
3371	# PROGRAMMSTART
3372	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
3373	PATH=$PATH:$TEMPDIR
3374
3375	# MPI debug option (argument checking, slows down execution due to increased latency)
3376	if [[ "$mpi_debug" = true ]]
3377	then
3378	export MPI_CHECK_ARGS=1
3379	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
3380	fi
3381
3382	if [[ "$totalview" = true ]]
3383	then
3384	printf "\n *** totalview debugger will be used"
3385	tv_opt="-tv"
3386	else
3387	tv_opt=""
3388	fi
3389
3390	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
3391	then
3392	if [[ "$ENVIRONMENT" = BATCH ]]
3393	then
3394	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
3395	then
3396	printf "\n +++ debug is allowed in interactive mode only"
3397	locat=debug
3398	exit
3399	fi
3400	fi
3401	if [[ $localhost = ibmh ]]
3402	then
3403
3404	# SETUP THE IBM MPI ENVIRONMENT
3405	export MP_SHARED_MEMORY=yes
3406	export AIXTHREADS_SCOPE=S
3407	export OMP_NUM_THREADS=$threads_per_task
3408	export AUTHSTATE=files
3409	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3410
3411	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
3412	export MP_ADAPTER_USE=shared
3413	export MP_CPU_USE=multiple
3414	export MP_TIMEOUT=1200
3415
3416	unset MP_TASK_AFFINITY
3417
3418	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
3419	#(( ii = 1 ))
3420	#while (( ii <= $numprocs ))
3421	#do
3422	# echo $localhost_realname >> hostfile
3423	# (( ii = ii + 1 ))
3424	#done
3425	#export MP_HOSTFILE=hostfile
3426
3427	if [[ "$LOADLBATCH" = yes ]]
3428	then
3429	totalview poe a.out $ROPTS
3430	else
3431	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3432	export TVDSVRLAUNCHCMD=ssh
3433	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3434	fi
3435	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
3436	then
3437	# CURRENTLY NO DEBUGGER ON LCSGI
3438	if [[ $run_coupled_model = true ]]
3439	then
3440	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
3441	locat=debug
3442	exit
3443	else
3444	echo "no_coupling" > runfile_atmos
3445	fi
3446	(( ii = $numprocs / $threads_per_task ))
3447	export OMP_NUM_THREADS=$threads_per_task
3448	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3449	if [[ $threads_per_task != 1 ]]
3450	then
3451	printf "\n threads per task: $threads_per_task"
3452	fi
3453	printf "\n\n"
3454	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3455	then
3456	# export MPI_LAUNCH_TIMEOUT=360
3457	if [[ "$totalview" = true ]]
3458	then
3459	printf "\n running totalview debugger"
3460	mpiexec_mpt $tv_opt -n $ii ./a.out $ROPTS < runfile_atmos
3461	else
3462	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3463	fi
3464	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3465	then
3466	# ulimit -s 300000 # A too large stack size causes problems
3467	# export MV2_NUM_PORTS=2
3468	# export MV2_CPU_MAPPING=0:1:2:3
3469	if [[ "$totalview" = true ]]
3470	then
3471	printf "\n running totalview debugger"
3472	mpiexec $tv_opt ./a.out $ROPTS < runfile_atmos
3473	else
3474	mpiexec ./a.out $ROPTS < runfile_atmos
3475	fi
3476	fi
3477	else
3478	printf "\n +++ no debug available on \"$localhost\" "
3479	printf "\n or not implemented in mrun so far"
3480	locat=debug
3481	exit
3482	fi
3483
3484	# end debug mode
3485	else
3486
3487	# normal execution
3488	if [[ -n $numprocs ]]
3489	then
3490	# RUNNING THE PROGRAM ON PARALLEL MACHINES
3491	if [[ $(echo $host \| cut -c1-3) = ibm ]]
3492	then
3493	# SETUP THE IBM MPI ENVIRONMENT
3494	if [[ $host != ibmh && $host != ibmkisti ]]
3495	then
3496	export MP_SHARED_MEMORY=yes
3497	export AIXTHREAD_SCOPE=S
3498	export OMP_NUM_THREADS=$threads_per_task
3499	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
3500	export AUTHSTATE=files
3501	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3502	# export MP_PRINTENV=yes
3503
3504	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3505	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3506	export MP_WAIT_MODE=poll
3507	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3508	fi
3509
3510	if [[ $host = ibmkisti ]]
3511	then
3512	export LANG=en_US
3513	export MP_SHARED_MEMORY=yes
3514	if [[ $threads_per_task = 1 ]]
3515	then
3516	export MP_SINGLE_THREAD=yes
3517	export MEMORY_AFFINITY=MCM
3518	else
3519	export OMP_NUM_THREADS=$threads_per_task
3520	fi
3521	fi
3522
3523	if [[ "$LOADLBATCH" = yes ]]
3524	then
3525	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3526	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3527	then
3528	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3529	else
3530	if [[ $run_coupled_model = false ]]
3531	then
3532	if [[ "$ocean_file_appendix" = true ]]
3533	then
3534	echo "precursor_ocean" > runfile_atmos
3535	else
3536	echo "precursor_atmos" > runfile_atmos
3537	fi
3538	else
3539	(( iia = $numprocs_atmos / $threads_per_task ))
3540	(( iio = $numprocs_ocean / $threads_per_task ))
3541	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3542	printf "\n using $coupled_mode coupling"
3543	printf "\n\n"
3544	echo "coupled_run $iia $iio" > runfile_atmos
3545	fi
3546	poe ./a.out $ROPTS < runfile_atmos
3547	fi
3548	else
3549	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
3550	then
3551	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3552	elif [[ $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibmy ]]
3553	then
3554	if [[ -f $hostfile ]]
3555	then
3556	cp $hostfile hostfile
3557	else
3558	(( ii = 1 ))
3559	while (( ii <= $numprocs ))
3560	do
3561	echo $localhost_realname >> hostfile
3562	(( ii = ii + 1 ))
3563	done
3564	fi
3565	export MP_HOSTFILE=hostfile
3566	if [[ $run_coupled_model = false ]]
3567	then
3568	if [[ "$ocean_file_appendix" = true ]]
3569	then
3570	echo "precursor_ocean" > runfile_atmos
3571	else
3572	echo "precursor_atmos" > runfile_atmos
3573	fi
3574	else
3575	(( iia = $numprocs_atmos / $threads_per_task ))
3576	(( iio = $numprocs_ocean / $threads_per_task ))
3577	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3578	printf "\n using $coupled_mode coupling"
3579	printf "\n\n"
3580	echo "coupled_run $iia $iio" > runfile_atmos
3581	fi
3582	if [[ $localhost = ibmy ]]
3583	then
3584	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3585	else
3586	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
3587	fi
3588
3589	else
3590	if [[ "$host_file" = "" ]]
3591	then
3592	printf "\n +++ no hostfile given in configuration file"
3593	locat=config_file
3594	exit
3595	else
3596	eval host_file=$host_file
3597	fi
3598	export MP_HOSTFILE=$host_file
3599	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3600	fi
3601	fi
3602	elif [[ $host = nech \|\| $host = necriam ]]
3603	then
3604	(( ii = nodes ))
3605	if [[ $ii = 1 ]]
3606	then
3607	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3608	export MPIPROGINF=YES
3609	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3610	echo "*** execution on single node with mpirun"
3611	mpirun -np $numprocs ./a.out $ROPTS
3612	else
3613	(( i = 0 ))
3614	while (( i < ii ))
3615	do
3616	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3617	(( i = i + 1 ))
3618	done
3619
3620	echo "#!/bin/sh" > mpi_exec_shell
3621	echo " " >> mpi_exec_shell
3622	echo "set -u" >> mpi_exec_shell
3623	echo "F_ERRCNT=0" >> mpi_exec_shell
3624	echo "MPIPROGINV=YES" >> mpi_exec_shell
3625	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3626	echo "cpurest=$cpurest" >> mpi_exec_shell
3627	echo "fname=$fname" >> mpi_exec_shell
3628	echo "localhost=$localhost" >> mpi_exec_shell
3629	echo "return_addres=$return_addres" >> mpi_exec_shell
3630	echo "return_username=$return_username" >> mpi_exec_shell
3631	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3632	echo "write_binary=$write_binary" >> mpi_exec_shell
3633	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3634	echo " " >> mpi_exec_shell
3635	echo "export F_ERRCNT" >> mpi_exec_shell
3636	echo "export MPIPROGINV" >> mpi_exec_shell
3637	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3638	echo "export cpurest" >> mpi_exec_shell
3639	echo "export fname" >> mpi_exec_shell
3640	echo "export localhost" >> mpi_exec_shell
3641	echo "export return_addres" >> mpi_exec_shell
3642	echo "export return_username" >> mpi_exec_shell
3643	echo "export tasks_per_node" >> mpi_exec_shell
3644	echo "export write_binary" >> mpi_exec_shell
3645	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3646	echo " " >> mpi_exec_shell
3647	echo "exec ./a.out" >> mpi_exec_shell
3648
3649	chmod u+x mpi_exec_shell
3650	export MPIPROGINF=YES
3651	mpirun -f multinode_config &
3652	wait
3653
3654	fi
3655	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
3656	then
3657
3658	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3659	# DOES NOT EXIST
3660	if [[ $host != lccrayb &&$host != lccrayf && $host != lcsgih && $host != lcsgib && $host != lckyuh && $host != lckyut ]]
3661	then
3662	if [[ -f $hostfile ]]
3663	then
3664	cp $hostfile hostfile
3665	(( ii = $numprocs / $threads_per_task ))
3666	else
3667	(( ii = 1 ))
3668	while (( ii <= $numprocs / $threads_per_task ))
3669	do
3670	echo $localhost_realname >> hostfile
3671	(( ii = ii + 1 ))
3672	done
3673	fi
3674	eval zeile=\"`head -n $ii hostfile`\"
3675	printf "\n *** running on: $zeile"
3676	fi
3677
3678	(( ii = $numprocs / $threads_per_task ))
3679	export OMP_NUM_THREADS=$threads_per_task
3680	# echo "*** OMP_NUM_THREADS=$OMP_NUM_THREADS"
3681	if [[ $threads_per_task != 1 ]]
3682	then
3683	# increase stack size to unlimited, because large runs
3684	# may abort otherwise
3685	ulimit -Ss unlimited
3686	printf "\n threads per task: $threads_per_task stacksize: unlimited"
3687	fi
3688	if [[ $run_coupled_model = false ]]
3689	then
3690	if [[ "$ocean_file_appendix" = true ]]
3691	then
3692	echo "precursor_ocean" > runfile_atmos
3693	else
3694	echo "precursor_atmos" > runfile_atmos
3695	fi
3696	printf "\n\n"
3697	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3698	then
3699	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3700	then
3701	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3702	# export MPI_DSM_DISTRIBUTE=1
3703	# MPI_DSM_CPULIST: pin MPI processes to cores
3704	if [[ $use_openmp = false ]]
3705	then
3706	if [[ "$sgi_feature" = ice2 ]]
3707	then
3708	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
3709	else
3710	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3711	fi
3712	else
3713	unset MPI_DSM_CPULIST
3714	fi
3715	# MPI_IB_RAILS: use both IB rails on ICE2
3716	export MPI_BUFS_PER_HOST=512
3717	export MPI_IB_RAILS=2
3718	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3719	export MPI_CONNECTIONS_THRESHOLD=8192
3720	# echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
3721	export MPI_TYPE_DEPTH=20
3722	# echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
3723	export MPI_GROUP_MAX=64
3724	# echo "*** MPI_GROUP_MAX=$MPI_GROUP_MAX"
3725	if [[ $use_openmp = true ]]
3726	then
3727	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3728	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3729	else
3730	mpiexec_mpt -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3731	fi
3732
3733	# next is test for openmp usage
3734	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3735	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
3736	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3737	then
3738	export MV2_NUM_PORTS=2
3739	# The default setting of MV2_CPU_MAPPING gives best results
3740	# export MV2_ENABLE_AFFINITY=1
3741	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3742	# if [[ "$sgi_feature" = ice2 ]]
3743	# then
3744	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
3745	# else
3746	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3747	# fi
3748	if [[ $use_openmp = true ]]
3749	then
3750	unset MV2_CPU_MAPPING
3751	export MV2_ENABLE_AFFINITY=0
3752	fi
3753	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
3754	echo "*** MV2_ENABLE_AFFINITY=$MV2_ENABLE_AFFINITY"
3755	if [[ $use_openmp = true ]]
3756	then
3757	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3758	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3759	else
3760	mpiexec -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3761	fi
3762	elif [[ "$mpilib" = impi ]]
3763	then
3764	echo "mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos"
3765	mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos
3766	fi
3767	elif [[ $host = lccrayb ]]
3768	then
3769	echo "--- aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos"
3770	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3771	# aprun -n $ii -ss -r2 -j1 a.out $ROPTS < runfile_atmos
3772	elif [[ $host = lccrayf ]]
3773	then
3774	aprun -n $ii -N $tasks_per_node -m ${memory}M a.out $ROPTS < runfile_atmos
3775	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3776	then
3777	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3778	elif [[ $host = lcflow ]]
3779	then
3780	mpirun -bootstrap sge -np $ii -env I_MPI_FABRICS shm:ofa a.out < runfile_atmos $ROPTS
3781	elif [[ $host = lcsb ]]
3782	then
3783	mpirun_rsh -hostfile $PBS_NODEFILE -np `cat $PBS_NODEFILE \| wc -l` a.out < runfile_atmos $ROPTS
3784	elif [[ $host = lckiaps ]]
3785	then
3786	mpirun -np $ii -f $PBS_NODEFILE a.out < runfile_atmos $ROPTS
3787	elif [[ $host = lckyu* ]]
3788	then
3789	mpiexec -n $ii --stdin runfile_atmos ./a.out $ROPTS
3790	else
3791	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3792	fi
3793	else
3794
3795	# currently there is no full MPI-2 support on ICE and XT4
3796	(( iia = $numprocs_atmos / $threads_per_task ))
3797	(( iio = $numprocs_ocean / $threads_per_task ))
3798	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3799	printf "\n using $coupled_mode coupling"
3800	printf "\n\n"
3801
3802	if [[ $coupled_mode = "mpi2" ]]
3803	then
3804	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3805	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3806	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3807	then
3808
3809	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3810	then
3811	# export MPI_LAUNCH_TIMEOUT=360
3812	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3813	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3814	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3815	then
3816	# ulimit -s 300000 # A too large stack size causes problems
3817	# export MV2_NUM_PORTS=2
3818	# export MV2_CPU_MAPPING=0:1:2:3
3819	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3820	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3821	fi
3822
3823	elif [[ $host = lccrayf \|\| $host = lcxe6 \|\| $host = lcxt5m ]]
3824	then
3825
3826	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3827	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3828
3829	else
3830	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3831	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3832	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3833	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3834	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3835	fi
3836	wait
3837
3838	else
3839
3840	echo "coupled_run $iia $iio" > runfile_atmos
3841	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3842	then
3843
3844	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3845	then
3846	# export MPI_LAUNCH_TIMEOUT=360
3847	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3848	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3849	then
3850	# ulimit -s 300000 # A too large stack size causes problems
3851	# export MV2_NUM_PORTS=2
3852	# export MV2_CPU_MAPPING=0:1:2:3
3853	mpiexec ./a.out $ROPTS < runfile_atmos
3854	fi
3855
3856	elif [[ $host = lccrayf \|\| $host = lcxe6 \|\| $host = lcxt5m ]]
3857	then
3858
3859	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3860
3861	elif [[ $host = lck \|\| $host = lckordi ]]
3862	then
3863
3864	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3865
3866	elif [[ $host = lckyu* ]]
3867	then
3868
3869	mpiexec -n $ii --stdin runfile_atmos ./a.out $ROPTS
3870
3871	fi
3872	wait
3873	fi
3874
3875	fi
3876	elif [[ $host = lckyoto ]]
3877	then
3878	set -xv
3879	export P4_RSHCOMMAND=plesh
3880	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
3881	if [[ "$ENVIRONMENT" = BATCH ]]
3882	then
3883	if [[ "$cond2" = fujitsu ]]
3884	then
3885	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
3886	elif [[ "cond2" = pgi ]]
3887	then
3888	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
3889	else
3890	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
3891	fi
3892	else
3893	if [[ "$cond2" = "" ]]
3894	then
3895	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
3896	else
3897	mpirun -np $numprocs ./a.out $ROPTS
3898	fi
3899	fi
3900	set +xv
3901	elif [[ $host = lctit ]]
3902	then
3903	export OMP_NUM_THREADS=$threads_per_task
3904	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3905	if [[ "$threads_per_task" != 1 ]]
3906	then
3907	export MV2_ENABLE_AFFINITY=0
3908	fi
3909	echo "----- PBS_NODEFILE content:"
3910	cat $PBS_NODEFILE
3911	echo "-----"
3912	(( ii = $numprocs / $threads_per_task ))
3913	echo "mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS"
3914	mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS
3915	else
3916	mpprun -n $numprocs a.out $ROPTS
3917	fi
3918	[[ $? != 0 ]] && execution_error=true
3919
3920
3921	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3922	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3923	then
3924	apprentice
3925	fi
3926	else
3927	a.out $ROPTS
3928	fi
3929	fi
3930	if [[ $? != 0 \|\| $execution_error = true ]]
3931	then
3932
3933	# ABBRUCH BEI LAUFZEITFEHLER
3934	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3935	printf "\n +++ runtime error occured"
3936	locat=execution
3937	exit
3938	else
3939	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3940	printf "\n$striche\n *** execution finished \n"
3941
3942	# Stop the dvr streaming server and process the dvr output in order
3943	# to create dvrs- and html-files containing all streams
3944	if [[ "$dvrserver_id" != "" ]]
3945	then
3946	kill $dvrserver_id
3947	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3948
3949	# If there is a directory, data have been output by the
3950	# streaming server. Otherwise, user has chosen dvrp_output=local
3951	if [[ -d DATA_DVR ]]
3952	then
3953
3954	# Add the current dvr configuration file to the dvr output
3955	# directory
3956	cp .dvrserver.config DATA_DVR
3957
3958	# Process the dvr output (option -s for also generating
3959	# sequence mode data)
3960	process_dvr_output -d DATA_DVR -f $fname -s
3961
3962	else
3963
3964	# Process the local output
3965	process_dvr_output -l -d DATA_DVR -f $fname
3966
3967	fi
3968
3969	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3970	then
3971
3972	# Process dvr output generated in local mode (dvrp_output=local)
3973	process_dvr_output -l -d DATA_DVR -f $fname
3974
3975	fi
3976	fi
3977
3978
3979
3980	# Call of combine_plot_fields in order to merge single files written
3981	# by each PE into one file.
3982	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
3983	then
3984	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
3985	printf "\n 2d- and/or 3d-data may be incomplete!"
3986	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
3987	elif [[ "$combine_plot_fields" == true ]]
3988	then
3989	if [[ $localhost = lccrayh \|\| $localhost = lccrayb ]]
3990	then
3991	printf "\n\n\n *** post-processing: now executing \"aprun -n 1 -N 1 combine_plot_fields${block}.x\" ..."
3992	aprun -n 1 -N 1 combine_plot_fields${block}.x #$ROPTS < runfile_atmos
3993	else
3994	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
3995	combine_plot_fields${block}.x
3996	fi
3997	else
3998	# Temporary solution to skip combine_plot_fields. This is necessary in case of huge amount of
3999	# data output. To do: extend this branch by creating a batch job for combine_plot_fields.
4000	printf "\n\n\n *** post-processing: skipping combine_plot_fields (-Z option set) ..."
4001	fi
4002
4003
4004
4005	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
4006	(( i = 0 ))
4007	while (( i < ioc ))
4008	do
4009	(( i = i + 1 ))
4010	if (( i == 1 ))
4011	then
4012	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
4013	fi
4014	printf "\n >>> ${out_command[$i]}"
4015	eval ${out_command[$i]}
4016	if (( i == ioc ))
4017	then
4018	printf "\n$striche\n"
4019	fi
4020	done
4021
4022
4023	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
4024	if [[ $do_trace = true ]]
4025	then
4026	printf "\n\n"
4027	ls -al
4028	fi
4029
4030
4031
4032	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
4033	(( i = 0 ))
4034	while (( i < iout ))
4035	do
4036	(( i = i + 1 ))
4037	if (( i == 1 ))
4038	then
4039	printf "\n\n *** saving OUTPUT-files:\n$striche"
4040	fi
4041
4042	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
4043	files_for_pes=false; filetyp=file
4044	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
4045	then
4046	files_for_pes=true; filetyp=directory
4047	actionout[$i]=""
4048	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
4049	then
4050	actionout[$i]=""
4051	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
4052	then
4053	files_for_pes=true; filetyp=directory
4054	actionout[$i]="ar"
4055	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
4056	then
4057	actionout[$i]="ar"
4058	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
4059	then
4060	files_for_pes=true; filetyp=directory
4061	actionout[$i]="fl"
4062	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
4063	then
4064	actionout[$i]="fl"
4065	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
4066	then
4067	files_for_pes=true; filetyp=directory
4068	actionout[$i]="tr"
4069	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
4070	then
4071	actionout[$i]="tr"
4072	fi
4073
4074	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
4075	then
4076	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
4077	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
4078	then
4079	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
4080	else
4081
4082
4083	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
4084	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
4085	# REMOTE-RECHNUNGEN
4086	if [[ "${actionout[$i]}" = tr ]]
4087	then
4088	if [[ $localhost != $fromhost ]]
4089	then
4090	if [[ $files_for_pes = false ]]
4091	then
4092	cps=""
4093	cst=""
4094	else
4095	cps=-c
4096	cst="/"
4097	fi
4098	if [[ $localhost = nech ]]
4099	then
4100
4101	# TRANSFER IN EIGENSTAENDIGEM JOB
4102	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4103	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4104	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4105	if [[ $files_for_pes = false ]]
4106	then
4107	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4108	else
4109	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
4110	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
4111	fi
4112
4113	echo "set -x" > transfer_${localout[$i]}
4114	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4115
4116	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
4117	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
4118	printf "\n or higher cycle\n"
4119	echo "batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4120
4121	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4122
4123	if [[ $localhost = nech ]]
4124	then
4125	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
4126	else
4127	if [[ "$LOGNAME" = b323013 ]]
4128	then
4129	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4130	else
4131	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4132	fi
4133	fi
4134
4135	else
4136
4137	# TRANSFER INNERHALB DIESES JOBS
4138	transfer_failed=false
4139	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
4140	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
4141	if [[ $localhost = lccrayb ]]
4142	then
4143	ssh $usern@blogin1 "cd $TEMPDIR; batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres ${localout[$i]} \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}"
4144	else
4145	batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4146	fi
4147	[[ $? != 0 ]] && transfer_failed=true
4148
4149	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4150	# LOKALER MASCHINE ANLEGEN
4151	if [[ $transfer_failed = true ]]
4152	then
4153	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4154	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4155
4156	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4157	# ANLEGEN.
4158	eval local_catalog=${pathout[$i]}
4159	if [[ ! -d $local_catalog ]]
4160	then
4161	printf " *** local directory does not exist. Trying to create:\n"
4162	printf " $local_catalog \n"
4163	mkdir -p $local_catalog
4164	fi
4165	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4166	transfer_problems=true
4167	fi
4168	fi
4169	else
4170
4171	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
4172	actionout[$i]=""
4173	fi
4174	fi
4175
4176
4177	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
4178	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
4179	# REMOTE-RECHNUNGEN
4180	if [[ "${actionout[$i]}" = tra ]]
4181	then
4182	if [[ $localhost != $fromhost ]]
4183	then
4184	if [[ $localhost = ibmh \|\| $localhost = nech ]]
4185	then
4186
4187	# TRANSFER IN EIGENSTAENDIGEM JOB
4188	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4189	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4190	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4191	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4192
4193	echo "set -x" > transfer_${localout[$i]}
4194	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4195
4196	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
4197	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
4198	printf "\n or higher cycle\n"
4199	echo "batch_scp $PORTOPT -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4200
4201	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4202
4203	if [[ $localhost = nech ]]
4204	then
4205	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
4206	else
4207	if [[ $LOGNAME = b323013 ]]
4208	then
4209	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4210	else
4211	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4212	fi
4213	fi
4214
4215	else
4216
4217	# TRANSFER INNERHALB DIESES JOBS
4218	transfer_failed=false
4219	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
4220	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
4221	if [[ $localhost = lccrayb ]]
4222	then
4223	ssh $usern@blogin1 "cd $TEMPDIR; batch_scp $PORTOPT -A -b -m -u $return_username $return_addres ${localout[$i]} \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}"
4224	else
4225	batch_scp $PORTOPT -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4226	fi
4227	[[ $? != 0 ]] && transfer_failed=true
4228
4229	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4230	# LOKALER MASCHINE ANLEGEN
4231	if [[ $transfer_failed = true ]]
4232	then
4233	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4234	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4235
4236	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4237	# ANLEGEN
4238	eval local_catalog=${pathout[$i]}
4239	if [[ ! -d $local_catalog ]]
4240	then
4241	printf " *** local directory does not exist. Trying to create:\n"
4242	printf " $local_catalog \n"
4243	mkdir -p $local_catalog
4244	fi
4245
4246	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4247	transfer_problems=true
4248	fi
4249	fi
4250	else
4251
4252	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
4253	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
4254	actionout[$i]=a
4255	fi
4256	fi
4257
4258
4259	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
4260	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
4261	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
4262	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
4263	if [[ "${actionout[$i]}" = fl ]]
4264	then
4265	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4266	chmod g+rx $tmp_data_catalog
4267	if [[ $files_for_pes = false ]]
4268	then
4269	printf "\n >>> OUTPUT: ${localout[$i]} to"
4270	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4271	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
4272	else
4273	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
4274	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4275	mkdir $tmp_data_catalog/${frelout[$i]}
4276	cd ${localout[$i]}
4277	for file in $(ls *)
4278	do
4279	ln -f $file $tmp_data_catalog/${frelout[$i]}
4280	done
4281	cd $TEMPDIR
4282	fi
4283
4284
4285	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
4286	if [[ $store_on_archive_system = true ]]
4287	then
4288
4289	if [[ $archive_system = asterix ]]
4290	then
4291	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4292	if [[ $files_for_pes = false ]]
4293	then
4294	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4295	else
4296	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4297	fi
4298	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4299	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
4300	echo "then" >> archive_${frelout[$i]}
4301	echo " do_stageout=false" >> archive_${frelout[$i]}
4302	echo "else" >> archive_${frelout[$i]}
4303	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
4304	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
4305	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
4306	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
4307	if [[ $files_for_pes = false ]]
4308	then
4309	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
4310	else
4311	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
4312	fi
4313	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
4314	echo "fi" >> archive_${frelout[$i]}
4315	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4316	elif [[ $archive_system = DMF ]]
4317	then
4318	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4319	if [[ $files_for_pes = false ]]
4320	then
4321	printf "\n +++ archiving of single files impossible with $archive_system !\n"
4322	locat=DMF
4323	exit
4324	else
4325	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
4326	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
4327	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
4328	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
4329	fi
4330	elif [[ $archive_system = tivoli ]]
4331	then
4332	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4333	if [[ $files_for_pes = false ]]
4334	then
4335	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4336	echo "set -x" >> archive_${frelout[$i]}
4337	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4338	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4339	else
4340
4341	echo "set -x" >> archive_${frelout[$i]}
4342	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
4343	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4344	cd $tmp_data_catalog
4345	all_files=`ls -1 ${frelout[$i]}/*`
4346	cd - > /dev/null
4347	(( inode = 0 ))
4348	(( tp1 = tasks_per_node + 1 ))
4349	while (( inode < nodes ))
4350	do
4351	# echo "*** all_files = \"$all_files\" "
4352	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4353	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4354	# echo "*** tasks_per_node = \"$tasks_per_node\" "
4355	# echo "*** files = \"$files\" "
4356	# echo "*** all_files = \"$all_files\" "
4357	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4358	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4359	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
4360	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4361	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4362	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4363	(( inode = inode + 1 ))
4364	done
4365	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4366	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4367	fi
4368	elif [[ $archive_system = ut ]]
4369	then
4370	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4371	if [[ $files_for_pes = false ]]
4372	then
4373	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4374	echo "set -x" >> archive_${frelout[$i]}
4375	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4376	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4377	else
4378
4379	echo "set -x" >> archive_${frelout[$i]}
4380	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
4381	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
4382	cd $tmp_data_catalog
4383	all_files=`ls -1 ${frelout[$i]}/*`
4384	cd - > /dev/null
4385	(( inode = 0 ))
4386	(( tp1 = tasks_per_node + 1 ))
4387	while (( inode < nodes ))
4388	do
4389	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4390	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4391	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4392	(( inode = inode + 1 ))
4393	done
4394	fi
4395	elif [[ $archive_system = none ]]
4396	then
4397	printf " +++ archiving on $localhost not available!\n"
4398	fi
4399
4400	if [[ $archive_system != none ]]
4401	then
4402	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
4403	then
4404	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4405	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4406	elif [[ $localhost = nech ]]
4407	then
4408	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
4409	fi
4410	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4411	fi
4412	else
4413	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
4414	fi
4415
4416
4417	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
4418	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4419	if [[ $files_for_pes = false ]]
4420	then
4421	cat /dev/null > ${pathout[$i]}
4422	else
4423	mkdir -p ${pathout[$i]}
4424	fi
4425
4426	fi
4427
4428
4429	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
4430	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
4431	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4432	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
4433	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
4434	# GEMAESSEN ARCHIVIERUNGEN GESETZT
4435	if [[ "${actionout[$i]}" = ar ]]
4436	then
4437	if [[ $files_for_pes = false ]]
4438	then
4439	printf "\n >>> OUTPUT: ${localout[$i]} to"
4440	printf "\n ${pathout[$i]}"
4441	printf "\n File will be copied to archive-system ($archive_system) !\n"
4442	else
4443	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
4444	printf "\n ${pathout[$i]}"
4445	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
4446	fi
4447	mv ${localout[$i]} ${frelout[$i]}
4448
4449	file_saved=false
4450
4451	if [[ $archive_system = asterix ]]
4452	then
4453	do_stageout=true
4454	(( stageout_anz = 0 ))
4455	while [[ $do_stageout = true ]]
4456	do
4457	if [[ $files_for_pes = false ]]
4458	then
4459	stageout ${frelout[$i]} > STAGE_OUTPUT
4460	else
4461	stageout -t ${frelout[$i]} > STAGE_OUTPUT
4462	fi
4463	cat STAGE_OUTPUT
4464	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
4465	then
4466	file_saved=true
4467	do_stageout=false
4468	else
4469	if [[ $files_for_pes = false ]]
4470	then
4471	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
4472	else
4473	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
4474	fi
4475	(( stageout_anz = stageout_anz + 1 ))
4476	if (( stageout_anz == 10 ))
4477	then
4478	printf "\n +++ stoped after 10 unsuccessful tries!"
4479	archive_save=false
4480	do_stageout=false
4481	else
4482	printf "\n *** new try to store on archive after 15 min:"
4483	sleep 900
4484	fi
4485	fi
4486	done
4487	elif [[ $archive_system = DMF ]]
4488	then
4489	if [[ $files_for_pes = false ]]
4490	then
4491	printf "\n +++ archiving of single files impossible on $archive_system!\n"
4492	locat=DMF
4493	exit
4494	else
4495	rm -rf $ARCHIVE/${frelout[$i]}
4496	cp -r ${frelout[$i]} $ARCHIVE
4497	fi
4498	file_saved=true
4499	elif [[ $archive_system = tivoli ]]
4500	then
4501	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4502	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4503	# GELEGT WERDEN
4504	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4505	chmod g+rx $tmp_data_catalog
4506	if [[ $files_for_pes = false ]]
4507	then
4508	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4509	else
4510	mkdir $tmp_data_catalog/${frelout[$i]}
4511	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4512	fi
4513
4514	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4515	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4516	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4517	if [[ $files_for_pes = false ]]
4518	then
4519	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4520	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4521	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4522	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4523	else
4524	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4525	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4526	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4527	fi
4528
4529	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4530	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4531	file_saved=true
4532
4533	elif [[ $archive_system = ut ]]
4534	then
4535	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4536	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4537	# GELEGT WERDEN
4538	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4539	chmod g+rx $tmp_data_catalog
4540	if [[ $files_for_pes = false ]]
4541	then
4542	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4543	else
4544	mkdir $tmp_data_catalog/${frelout[$i]}
4545	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4546	fi
4547
4548	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4549	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4550	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4551	if [[ $files_for_pes = false ]]
4552	then
4553	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4554	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4555	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4556	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4557	else
4558	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4559	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4560	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4561	fi
4562
4563	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
4564	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4565	file_saved=true
4566
4567	else
4568	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
4569	archive_save=false
4570	fi
4571	if [[ $file_saved = true ]]
4572	then
4573	if [[ $files_for_pes = false ]]
4574	then
4575	cat /dev/null > ${pathout[$i]}
4576	else
4577	mkdir -p ${pathout[$i]}
4578	fi
4579	fi
4580	fi
4581
4582	# APPEND AUF LOKALER MASCHINE
4583	if [[ "${actionout[$i]}" = "a" ]]
4584	then
4585	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4586	then
4587	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}.${extout[$i]}\n"
4588	cat ${localout[$i]} >> ${pathout[$i]}.${extout[$i]}
4589	else
4590	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
4591	cat ${localout[$i]} >> ${pathout[$i]}
4592	fi
4593	fi
4594
4595	# KOPIEREN AUF LOKALER MASCHINE
4596	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
4597	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
4598	then
4599
4600	# KOPIEREN AUF EINPROZESSORMASCHINE
4601	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4602	then
4603	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
4604	if [[ $link_local_output = true ]]
4605	then
4606	printf " using ln -f\n"
4607	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4608	fi
4609	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4610	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
4611	then
4612	if [[ $link_local_output = true ]]
4613	then
4614	printf " ln failed, using cp...\n"
4615	fi
4616	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4617	fi
4618	else
4619	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
4620	if [[ $link_local_output = true ]]
4621	then
4622	printf " using ln -f\n"
4623	ln -f ${localout[$i]} ${pathout[$i]}
4624	fi
4625	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4626	if [[ ! -f "${pathout[$i]}" ]]
4627	then
4628	if [[ $link_local_output = true ]]
4629	then
4630	printf " ln failed, using cp...\n"
4631	fi
4632	cp ${localout[$i]} ${pathout[$i]}
4633	fi
4634	fi
4635
4636	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
4637	then
4638
4639	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
4640	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
4641	# WIRD DANN KOPIERT
4642	# PER MOVE UMBENANNT WERDEN
4643	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4644	if [[ $link_local_output = true ]]
4645	then
4646	printf " using ln -f\n"
4647	mkdir ${pathout[$i]}
4648	cd ${localout[$i]}
4649	for file in $(ls *)
4650	do
4651	ln -f $file ${pathout[$i]}
4652	done
4653	cd $TEMPDIR
4654	fi
4655	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4656	if [[ ! -f "${pathout[$i]}/_0000" ]]
4657	then
4658	if [[ $link_local_output = true ]]
4659	then
4660	printf " ln failed for .../_0000, using cp...\n"
4661	fi
4662	cp -r ${localout[$i]} ${pathout[$i]}
4663	fi
4664
4665	fi
4666	fi
4667	done
4668	if (( i != 0 ))
4669	then
4670	if [[ $transfer_problems = true ]]
4671	then
4672	printf "\n$striche\n *** OUTPUT-files saved"
4673	printf "\n +++ WARNING: some data transfers failed! \n"
4674	else
4675	printf "\n$striche\n *** all OUTPUT-files saved \n"
4676	fi
4677	fi
4678
4679
4680	# EVENTUELL FOLGEJOB STARTEN
4681	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4682	if [[ -f CONTINUE_RUN ]]
4683	then
4684
4685	if [[ $archive_save = true ]]
4686	then
4687
4688	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4689	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4690	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4691	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4692	# HANDEN
4693	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4694	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4695	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4696	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4697	then
4698	mc=`echo $mc \| sed 's/#/f/g'`
4699	fi
4700
4701
4702	# JOB STARTEN
4703	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4704	echo " $mc"
4705	printf "\n$striche\n"
4706	if [[ $localhost != $fromhost ]]
4707	then
4708
4709	if [[ $localhost = lcsgih \|\| $localhost = lccrayb \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibms \|\| $localhost = lcflow \|\| $localhost = lckyu* ]]
4710	then
4711	echo "*** ssh will be used to initiate restart-runs!"
4712	echo " return_addres=\"$return_addres\" "
4713	echo " return_username=\"$return_username\" "
4714	if [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4715	then
4716	if [[ $localhost = ibmh ]]
4717	then
4718	ssh $SSH_PORTOPT $usern@136.172.40.15 "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4719	elif [[ $localhost = lccrayb ]]
4720	then
4721	ssh $usern@blogin1 "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4722	else
4723	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4724	fi
4725	else
4726	if [[ $localhost = ibmkisti ]]
4727	then
4728	ssh $SSH_PORTOPT $usern@gaiad "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4729	elif [[ $localhost = lcflow ]]
4730	then
4731	/usr/bin/ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4732	elif [[ $localhost = lccrayb ]]
4733	then
4734	ssh $usern@blogin1 "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4735	else
4736	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4737	fi
4738	fi
4739	else
4740	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4741	locat=restart; exit
4742	fi
4743
4744	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4745	# DER AKTUELLE JOB ENDET
4746	if [[ $queue = special1q ]]
4747	then
4748	sleep 120
4749	else
4750	sleep 30
4751	fi
4752
4753	else
4754
4755	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4756	# RUFEN WERDEN, AUSSER AUF lcfimm
4757	cd $LOCAL_PWD
4758	if [[ $localhost = lcfimm ]]
4759	then
4760	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4761	elif [[ $localhost = lckyuh ]]
4762	then
4763	printf "\n +++ WARNING: no restart mechanism available for host \"$localhost\" "
4764	printf "\n please restart job manually using command:\n"
4765	printf "\n \"$mc\" "
4766	else
4767	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4768	fi
4769	cd - > /dev/null
4770	fi
4771	if [[ $localhost = lckyuh ]]
4772	then
4773	printf "\n$striche\n *** restart-run to be initiated manually\n"
4774	else
4775	printf "\n$striche\n *** restart-run initiated \n"
4776	fi
4777
4778
4779	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4780	# GEHOLT WORDEN SIND, LOESCHEN
4781	(( i = 0 ))
4782	while (( i < iin ))
4783	do
4784	(( i = i + 1 ))
4785	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4786	then
4787	rm -r $tmp_data_catalog/${frelin[$i]}
4788	fi
4789	done
4790
4791	else
4792
4793	printf "\n +++ no restart-run possible, since errors occured"
4794	printf "\n during the archive process"
4795	fi
4796
4797	fi
4798
4799
4800
4801	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4802	if [[ "$email_notification" != "none" ]]
4803	then
4804
4805	if [[ $localhost != $fromhost ]]
4806	then
4807	if [[ -f CONTINUE_RUN ]]
4808	then
4809	echo "PALM restart run necessary" > email_text
4810	echo "description header of actual run:" >> email_text
4811	cat CONTINUE_RUN >> email_text
4812	echo "mrun-command to restart:" >> email_text
4813	echo "$mc" >> email_text
4814	else
4815	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4816	fi
4817	mail $email_notification < email_text
4818	printf "\n *** email notification sent to \"$email_notification\" "
4819	fi
4820	fi
4821
4822
4823
4824	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4825	cd $HOME
4826	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4827
4828	else
4829
4830
4831	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4832	# CHENDE AKTIONEN DURCHGEFUEHRT
4833
4834	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4835	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
4836	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4837	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4838	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4839	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4840	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4841	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4842	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4843	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4844	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4845	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4846	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4847	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4848	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4849	if [[ $use_openmp = true ]]
4850	then
4851	mrun_com=${mrun_com}" -O $threads_per_task"
4852	fi
4853	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4854	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
4855	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4856	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4857	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4858	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4859	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4860	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4861	[[ "$check_namelist_files" = false ]] && mrun_com=${mrun_com}" -z"
4862	[[ "$combine_plot_fields" = false ]] && mrun_com=${mrun_com}" -Z"
4863	[[ "$max_par_io_str" != "" ]] && mrun_com=${mrun_com}" -w $max_par_io_str"
4864	if [[ $do_remote = true ]]
4865	then
4866	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4867	fi
4868
4869
4870	# create executable for batch job
4871	if [[ $create_executable_for_batch = true && $restart_run != true ]]
4872	then
4873
4874	printf "\n *** creating the executable for batch job\n"
4875
4876	# method only works for batch jobs on local hosts
4877	if [[ $host != $localhost ]]
4878	then
4879	printf "\n +++ creation of executables is only allowed for batch jobs on local hosts."
4880	printf "\n Please set create_executable_for_batch = false in the config-file.\n"
4881	locat=create_executable; exit
4882	fi
4883
4884	mkdir $working_directory/SOURCES_FOR_RUN_${fname}/TMPDIR_FOR_CREATING_EXECUTABLE
4885	cd $working_directory/SOURCES_FOR_RUN_${fname}/TMPDIR_FOR_CREATING_EXECUTABLE
4886
4887	cp $make_depository .
4888	tar -xf $make_depository > /dev/null 2>&1
4889	cp ../* . > /dev/null 2>&1
4890
4891	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
4892
4893	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
4894	then
4895	printf "\n +++ error occured while compiling or linking"
4896	locat=compile
4897	exit
4898	fi
4899
4900	mv a.out ..
4901	cd - > /dev/null 2>&1
4902	rm -rf $working_directory/SOURCES_FOR_RUN_${fname}/TMPDIR_FOR_CREATING_EXECUTABLE
4903
4904	printf " *** executable created in \"$working_directory/SOURCES_FOR_RUN_${fname}\"\n "
4905
4906	fi
4907
4908
4909	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4910	jobfile=jobfile.$RANDOM
4911
4912
4913	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4914	echo "mkdir $TEMPDIR" >> $jobfile
4915	echo "cd $TEMPDIR" >> $jobfile
4916
4917
4918	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4919	if [[ $do_trace = true ]]
4920	then
4921	echo "set -x" >> $jobfile
4922	else
4923	echo "set +vx" >> $jobfile
4924	fi
4925
4926
4927	# initialize the environment and load modules
4928	if [[ "$init_cmds" != "" ]]
4929	then
4930	echo "$init_cmds" >> $jobfile
4931	fi
4932	if [[ "$module_calls" != "" ]]
4933	then
4934	echo "$module_calls" >> $jobfile
4935	fi
4936
4937
4938	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4939	# DATEI FUER DEN JOB
4940	if [[ $( echo $host \| cut -c1-5 ) = lcsgi \|\| $host = ibmkisti \|\| $host = lccrayb \|\| $host = lccrayf ]]
4941	then
4942
4943	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4944	# KOPIEREN
4945	if [[ $restart_run != true ]]
4946	then
4947	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4948	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4949	fi
4950
4951	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4952	# (BEI JOBS AUF LOKALEM RECHNER REICHT CP)
4953	echo "set -x" >> $jobfile
4954	if [[ $host = $localhost ]]
4955	then
4956
4957	# DUE TO UNKNOWN REASONS, COPY WITH cp COMMAND CREATES CORRUPT
4958	# FILES ON CRAY XC30 SYSTEMS (CSC HELSINKI), rsync IS USED INSTEAD
4959	echo "rsync -av -t $working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4960
4961	else
4962	if [[ $host = ibmkisti ]]
4963	then
4964	# on KISTI's IBM firewall is only opened on interactive node
4965	echo "localdir=\`pwd\`" >> $jobfile
4966	echo "ssh $SSH_PORTOPT $remote_username@gaiad \"cd \$localdir; scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
4967	elif [[ $host = lccrayb ]]
4968	then
4969	echo "localdir=\`pwd\`" >> $jobfile
4970	echo "ssh $SSH_PORTOPT $remote_username@blogin1 \"cd \$localdir; scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
4971	else
4972	echo "scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4973	fi
4974	fi
4975	echo "export SOURCES_COMPLETE=true" >> $jobfile
4976
4977	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4978	# ARBEITSVERZEICHNIS VERSCHIEBEN
4979	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4980	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4981	echo "chmod u+rwx $mrun_script_name" >> $jobfile
4982	echo "execute_mrun=true" >> $jobfile
4983	echo " " >> $jobfile
4984
4985	else
4986
4987	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4988	# SOWIE GEGEBENENFALLS DES MAKEFILES
4989	if [[ $do_compile = true ]]
4990	then
4991
4992	source_catalog=SOURCES_FOR_RUN_$fname
4993
4994	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4995	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4996	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4997	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4998	echo "export SOURCES_COMPLETE=true" >> $jobfile
4999	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
5000
5001	for filename in $source_list
5002	do
5003	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
5004	echo "cat > $filename << \"%END%\"" >> $jobfile
5005	cat $source_catalog/$filename >> $jobfile
5006	echo " " >> $jobfile
5007	echo "%END%" >> $jobfile
5008	echo " " >> $jobfile
5009	done
5010
5011	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
5012	echo "cat > Makefile << \"%END%\"" >> $jobfile
5013	cat $source_catalog/Makefile >> $jobfile
5014	echo " " >> $jobfile
5015	echo "%END%" >> $jobfile
5016	echo " " >> $jobfile
5017
5018	echo "cd - > /dev/null" >> $jobfile
5019
5020	fi
5021
5022
5023	# ABSPEICHERN DER KONFIGURATIONSDATEI
5024	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
5025	# Lines with #$ coming from the svn keyword substitution are
5026	# removed from the config file in order to avoid problems
5027	# with the SGE batch system
5028	echo "cat > $config_file << \"%END%\"" >> $jobfile
5029	if [[ $host = lckyuh ]]
5030	then
5031	# no cross compiler on compute node
5032	sed 's/frtpx/frt/g' $config_file >> $jobfile
5033	else
5034	sed 's/#$.*//g' $config_file >> $jobfile
5035	fi
5036	echo "%END%" >> $jobfile
5037	echo " " >> $jobfile
5038
5039
5040	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
5041	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
5042	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
5043	if [[ $host = lckyuh ]]
5044	then
5045	sed 's/\/bin\/ksh/\/bin\/bash/g' ${PALM_BIN}/$mrun_script_name >> $jobfile
5046	else
5047	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
5048	fi
5049	echo "%END%" >> $jobfile
5050	echo "chmod u+x $mrun_script_name" >> $jobfile
5051	echo "execute_mrun=true" >> $jobfile
5052	echo " " >> $jobfile
5053
5054	fi
5055
5056
5057	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
5058	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
5059	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
5060	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
5061	if [[ $do_remote = true ]]
5062	then
5063	(( i = 0 ))
5064	while (( i < iin ))
5065	do
5066	(( i = i + 1 ))
5067	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
5068	if [[ "${transin[$i]}" = job ]]
5069	then
5070	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
5071	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
5072	echo " " >> $jobfile
5073	echo "%END%" >> $jobfile
5074	else
5075	echo "batch_scp $PORTOPT -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
5076	fi
5077
5078	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
5079	echo "if [[ \$? = 1 ]]" >> $jobfile
5080	echo "then" >> $jobfile
5081	echo " echo \" \" " >> $jobfile
5082	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
5083	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
5084	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
5085	echo " execute_mrun=false" >> $jobfile
5086	echo "fi" >> $jobfile
5087	done
5088	fi
5089
5090	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
5091	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
5092	echo "LOCAL_PWD=$working_directory" >> $jobfile
5093	echo "export LOCAL_PWD" >> $jobfile
5094
5095	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
5096	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
5097	echo "export LOCAL_MRUN_PATH" >> $jobfile
5098
5099	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
5100	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
5101	then
5102	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
5103	elif [[ $host = lcflow \|\| $localhost = lcflow ]]
5104	then
5105	echo "export PALM_BIN=$PALM_BIN" \| sed -e 's:'$HOME':$HOME:' >> $jobfile
5106	echo "export PATH=\$PATH:\$PALM_BIN" >> $jobfile
5107	fi
5108
5109	# MRUN AUF ZIELRECHNER AUFRUFEN (queue is workaround for ibmkisti)
5110	echo "set -x" >> $jobfile
5111	echo "queue=$queue" >> $jobfile
5112	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
5113	echo 'ls -al; echo `pwd`' >> $jobfile
5114	echo "cd \$HOME" >> $jobfile
5115	echo "rm -rf $TEMPDIR" >> $jobfile
5116
5117
5118
5119
5120	# JOB PER SUBJOB STARTEN
5121	if [[ $silent = false ]]
5122	then
5123	printf "\n "
5124	else
5125	printf "\n\n"
5126	fi
5127
5128	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $PORTOPT $jobfile
5129	rm -rf $jobfile
5130
5131
5132	fi # ENDE REMOTE-TEIL
5133
5134
5135
5136	# ENDE DER PROZEDUR

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