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source: palm/trunk/SCRIPTS/mrun @ 1188

Last change on this file since 1188 was 1185, checked in by heinze, 11 years ago
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1	#!/bin/ksh
2
3	# mrun - script for running PALM jobs
4
5	#--------------------------------------------------------------------------------#
6	# This file is part of PALM.
7	#
8	# PALM is free software: you can redistribute it and/or modify it under the terms
9	# of the GNU General Public License as published by the Free Software Foundation,
10	# either version 3 of the License, or (at your option) any later version.
11	#
12	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
13	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
14	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
15	#
16	# You should have received a copy of the GNU General Public License along with
17	# PALM. If not, see <http://www.gnu.org/licenses/>.
18	#
19	# Copyright 1997-2012 Leibniz University Hannover
20	#--------------------------------------------------------------------------------#
21	#
22	# Current revisions:
23	# ------------------
24	#
25	#
26	# Former revisions:
27	# -----------------
28	# $Id: mrun 1185 2013-06-17 14:07:59Z heinze $
29	# use of cluster/express queue enabled (ibmh)
30	#
31	# 1124 2013-04-09 15:46:52Z raasch
32	# variable "memory" is exported via typeset option -x, because otherwise an unknown
33	# side effect may lead to data loss while getopts is reading the script-option arguments
34	#
35	# 1122 2013-04-09 08:37:16Z heinze
36	# Bugfix: change type of variable last_char
37	#
38	# 1119 2013-04-05 15:11:19Z raasch
39	# Bugfix for setting -T option for subjob
40	#
41	# 1108 2013-03-05 07:03:32Z raasch
42	# bugfix for coupled runs on lckyut/lckyuh
43	#
44	# 1106 2013-03-04 05:31:38Z raasch
45	# --stdin argument for mpiexec on lckyuh
46	# -y and -Y settings output to header
47	#
48	# 1103 2013-02-20 02:15:53Z raasch
49	# default script runs again under ksh, because of unsolved problems with read
50	# from stdin: when bash script is called from a ksh, message "read error: 0:
51	# Resource temporarily unavailable" appears and script does not stop,
52	# further bash compatibility adjustments,
53	# shebang line replaced by /bin/bash when running jobs on lckyuh; no restarts
54	# on lckyuh, but mrun does not terminate and issues a warning instead
55	#
56	# 1101 2013-02-17 10:20:21Z raasch
57	# script now running under bash instead of ksh, which required small adjustments
58	# (output formatting with printf instead "typeset -L/-R", print replaced by echo,
59	# read from stdin),
60	# cross compilername on lckyuh compute nodes replaced by real compiler name
61	#
62	# 1099 2013-02-10 01:47:43Z raasch
63	# adjustments for Kyushu-University computing center (lckyuh - hayaka)
64	# and for Forwind cluster (lcflow)
65	# small further adjustments for lckyut
66	#
67	# 1094 2013-02-03 01:52:12Z raasch
68	# explicit ssh/scp port can be set in config file with environment variable
69	# scp_port. This port is handled to all ssh/scp/batch_scp calls.
70	# decalpha parts (yonsei) removed
71	#
72	# 2013-02-02 07:06:13Z raasch
73	# adjustments for Kyushu-University computing center (lckyut - tatara)
74	#
75	# 1083 2013-01-04 10:22:09Z maronga
76	# bugfix in parameter file check (read %cpp_options was missing)
77	#
78	# 1069 2012-11-28 16:18:43Z maronga
79	# bugfix: coupling mode was always set to mpi2, typos removed
80	#
81	# 1058 2012-11-21 07:00:35Z raasch
82	# Intel inspector (inspxe) is given the number of PEs instead of the number of
83	# nodes
84	#
85	# 1046 2012-11-09 14:38:45Z maronga
86	# code put under GPL (PALM 3.9)
87	#
88	# 21/03/94 - Siggi - first version finished
89	# 03/03/94 - Siggi - script development started
90	#
91	#--------------------------------------------------------------------------------#
92	# mrun - script for running PALM jobs
93	#--------------------------------------------------------------------------------#
94
95
96
97	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
98
99	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
100	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
101	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
102
103	AddFilenames=""
104	additional_conditions=""
105	add_source_path=""
106	afname=""
107	archive_save=true
108	archive_system=none
109	check_namelist_files=true
110	combine_plot_fields=true
111	compiler_name=""
112	cond1=""
113	cond2=""
114	config_file=.mrun.config
115	coupled_dist=""
116	coupled_mode="mpi1"
117	cpp_opts=""
118	cpp_options=""
119	cpumax=0
120	cpurest=0
121	delete_temporary_catalog=true
122	do_batch=false
123	do_compile=true
124	do_remote=false
125	do_stagein=true
126	do_stageout=true
127	do_trace=false
128	email_notification="none"
129	exclude=""
130	executable=""
131	execution_error=false
132	fimm=false
133	fname=test
134	fromhost=""
135	global_revision=""
136	group_number=none
137	host=""
138	host_file=""
139	hp=""
140	ignore_archive_error=false
141	input_list=""
142	interpreted_config_file=""
143	job_catalog="~/job_queue"
144	job_on_file=""
145	keep_data_from_previous_run=false
146	link_local_input=false
147	link_local_output=false
148	localhost_realname=$(hostname)
149	local_compile=false
150	local_dvrserver_running=.FALSE.
151	locat=normal
152	mainprog=""
153	makefile=""
154	max_par_io_str=""
155	mc=$0
156	while [[ $(echo $mc \| grep -c "/") != 0 ]]
157	do
158	mc=`echo $mc \| cut -f2- -d"/"`
159	done
160	module_calls=""
161	mrun_script_name=$mc
162	netcdf_inc=""
163	netcdf_lib=""
164	netcdf_support=false
165	node_usage=default
166	numprocs=""
167	numprocs_atmos=0
168	numprocs_ocean=0
169	OOPT=""
170	openmp=false
171	output_list=""
172	package_list=""
173	punkte="..........................................................."
174	queue=none
175	read_from_config=""
176	restart_run=false
177	if [[ `hostname` = rte10 ]]
178	then
179	return_addres=133.5.185.60
180	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
181	elif [[ `hostname` = climate0 ]]
182	then
183	return_addres=165.132.26.68
184	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
185	elif [[ `hostname` = urban00 ]]
186	then
187	return_addres=147.46.30.151
188	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
189	else
190	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
191	fi
192	return_password=""
193	return_username=$LOGNAME
194	remotecall=false
195	remote_username=""
196	run_coupled_model=false
197	run_mode=""
198	scirocco=false
199	store_on_archive_system=false
200	striche=" ----------------------------------------------------------------------------"
201	silent=false
202	source_list=""
203	source_path=SOURCE
204	tasks_per_node=""
205	threads_per_task=1
206	tmpcreate=false
207	tmp_data_catalog=""
208	transfer_problems=false
209	usern=$LOGNAME
210	use_openmp=false
211	version="MRUN 2.0 Rev$Rev: 1185 $"
212	working_directory=`pwd`
213	TOPT=""
214	XOPT=""
215	zeit=$( date \| cut -c 12-19 )
216
217	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 stagein_anz=0 stageout_anz=0
218	typeset -x -i memory=0 # has to be exported here, otherwise an unknown side
219	# effect may cause data loss when getopts is reading the
220	# script-option arguments
221	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek last_char_int maxcycle minuten nodes pes sekunden tp1
222
223
224
225
226	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
227	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
228
229	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
230	# EXPORTIERT WERDEN
231	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
232	export group_number input_list numprocs output_list queue run_mode
233
234
235
236	# FEHLERBEHANDLUNG
237	# BEI EXIT:
238	trap 'rm -rf $working_directory/tmp_mrun
239	if [[ $locat != localhost ]]
240	then
241	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
242	# then
243	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
244	#MRUN-calls on $localhost
245	#
246	#date and time user localhost remotehost termination mrun-command
247	#--------------------------------------------------------------------------------------------------------------------
248	#%STATEND%
249	# chmod 666 ${mrun_path}/statistik/mrun_statistik
250	# fi
251	#
252	# # EINTRAG IN DIE STATISTIK-DATEI
253	# string1=`date` #-L35
254	# string2=$usern #-L12
255	# string3=$localhost_realname #-L12
256	# string4=$host #-L12
257	# string5=$locat #-L12
258	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
259	# then
260	# if [[ $do_batch = true ]]
261	# then
262	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
263	# else
264	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
265	# fi
266	# fi
267	echo " " > /dev/null
268	fi
269
270	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
271	then
272
273	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
274	(( i = 0 ))
275	while (( i < iec ))
276	do
277	(( i = i + 1 ))
278	printf "\n *** Execution of ERROR-command:\n"
279	printf " >>> ${err_command[$i]}\n"
280	eval ${err_command[$i]}
281	done
282	if [[ -n $interpreted_config_file ]]
283	then
284	rm -rf $interpreted_config_file
285	fi
286	if [[ -n .mrun_environment ]]
287	then
288	rm -rf .mrun_environment
289	fi
290	if [[ $tmpcreate = true ]]
291	then
292	printf "\n *** Contents of \"$TEMPDIR\":\n"
293	ls -al; cd
294	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
295	fi
296	if [[ "$dvrserver_id" != "" ]]
297	then
298	echo "+++ killing dvrserver_id=$dvrserver_id"
299	kill $dvrserver_id
300	fi
301	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
302	then
303	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
304	fi
305	printf "\n\n+++ MRUN killed \n\n"
306	elif [[ $locat != control_c ]]
307	then
308	printf "\n\n --> all actions finished\n\n"
309	printf " Bye, bye $usern !!\n\n"
310	fi' exit
311
312
313	# BEI TERMINAL-BREAK:
314	trap 'rm -rf $working_directory/tmp_mrun
315	rm -rf $working_directory/tmp_check_namelist_files
316	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
317	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
318	then
319	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
320	fi
321	if [[ "$dvrserver_id" != "" ]]
322	then
323	echo "+++ killing dvrserver_id=$dvrserver_id"
324	kill $dvrserver_id
325	fi
326	printf "\n+++ MRUN killed by \"^C\" \n\n"
327	locat=control_c
328	exit
329	' 2
330
331
332	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
333	# BEEN SET
334	if [[ "$PALM_BIN" = "" ]]
335	then
336	printf "\n +++ environment variable PALM_BIN has not been set"
337	printf "\n please set it to the directory where the PALM scripts are located"
338	locat=palm_bin; exit
339	fi
340	export PATH=$PALM_BIN:$PATH
341
342
343
344	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
345	# FUER FOLGEJOBS BENOETIGT WIRD
346	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vw:xX:yY:zZ option
347	do
348	case $option in
349	(a) afname=$OPTARG;;
350	(A) store_on_archive_system=true; mc="$mc -A";;
351	(b) do_batch=true; mc="$mc -b";;
352	(B) delete_temporary_catalog=false; mc="$mc -B";;
353	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
354	(C) restart_run=true; mc="$mc -C";;
355	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
356	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
357	(F) job_on_file="-D"; mc="$mc -F";;
358	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
359	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
360	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
361	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
362	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
363	(I) ignore_archive_error=true; mc="$mc -I";;
364	(k) keep_data_from_previous_run=true; mc="$mc -k";;
365	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
366	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
367	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
368	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
369	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
370	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
371	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
372	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
373	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
374	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
375	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
376	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
377	(S) read_from_config=false; mc="$mc -S";;
378	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
379	(T) mrun_tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
380	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
381	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
382	(v) silent=true; mc="$mc -v";;
383	(w) max_par_io_str=$OPTARG; mc="$mc -w$OPTARG";;
384	(x) do_trace=true;set -x; mc="$mc -x";;
385	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
386	(y) ocean_file_appendix=true; mc="$mc -y";;
387	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
388	(z) check_namelist_files=false; mc="$mc -z";;
389	(Z) combine_plot_fields=false; mc="$mc -Z";;
390	(\?) printf "\n +++ unknown option $OPTARG \n"
391	printf "\n --> type \"$0 ?\" for available options \n"
392	locat=parameter;exit;;
393	esac
394	done
395
396
397	# EVTL. POSITIONSPARAMETER EINLESEN
398	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
399	(( to_shift = $OPTIND - 1 ))
400	shift $to_shift
401
402	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
403	if [[ "$1" = "?" ]]
404	then
405	(printf "\n *** mrun can be called as follows:\n"
406	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. -z -Z <modus> \n"
407	printf "\n Description of available options:\n"
408	printf "\n Option Description Default-Value"
409	printf "\n -a base name of input files equiv. -d"
410	printf "\n -A archiving when using file-attribute fl"
411	printf "\n -b batch-job on local machine ---"
412	printf "\n -B do not delete temporary directory at end ---"
413	printf "\n -c configuration file .mrun.config"
414	printf "\n -d base name of files attached to program test"
415	printf "\n -D preprocessor(cpp)-directives \"\" "
416	printf "\n -F create remote job file only ---"
417	printf "\n -h execution host $localhost_realname"
418	printf "\n -i INPUT control list \"\" "
419	printf "\n -I archiving errors of previous batch-jobs"
420	printf "\n will be ignored"
421	printf "\n -k keep data from previous run"
422	printf "\n -K additional conditions for controling"
423	printf "\n usage of conditional code and"
424	printf "\n env-variables in configuration file \"\" "
425	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
426	printf "\n -M Makefile name Makefile"
427	printf "\n -n node usage (shared/not_shared) depending on -h"
428	printf "\n -o OUTPUT control list \"\" "
429	printf "\n -O use OpenMP ---"
430	printf "\n -p software package list \"\" "
431	printf "\n -q queue \"$queue\" "
432	printf "\n -r run control list (combines -i -o) \"\" "
433	printf "\n -s filenames of routines to be compiled \"\" "
434	printf "\n must end with .f, .f90, .F, or .c !"
435	printf "\n use \"..\" for more than one file and wildcards"
436	printf "\n -s LM compiles all locally modified files"
437	printf "\n -S config file interpreted by shellscript ---"
438	printf "\n -t allowed cpu-time in seconds (batch) 0"
439	printf "\n -T tasks per node depending on -h"
440	printf "\n -u username on remote machine \"\" "
441	printf "\n -v no prompt for confirmation ---"
442	printf "\n -w maximum parallel io streams as given by -X"
443	printf "\n -x tracing of mrun for debug purposes ---"
444	printf "\n -X # of processors (on parallel machines) 1"
445	printf "\n -y add appendix \"_O\" to all local output"
446	printf "\n files (ocean precursor runs followed by"
447	printf "\n coupled atmosphere-ocean runs) ---"
448	printf "\n -Y run coupled model, \"#1 #2\" with"
449	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
450	printf "\n -z disable a priori parameter file check ---"
451	printf "\n -Z skip combine_plot_fields at the end of "
452	printf "\n the simulation ---"
453	printf "\n "
454	printf "\n Possible values of positional parameter <modus>:"
455	printf "\n \"?\" - this outline \n\n") \| more
456	exit
457	elif [[ "$1" != "" ]]
458	then
459	printf "\n +++ positional parameter $1 unknown \n"
460	locat=parameter; exit
461	fi
462
463
464
465	# KURZE STARTMELDUNG
466	printf "\n*** $version "
467	printf "\n will be executed. Please wait ..."
468
469
470
471	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
472	if [[ ! -f $config_file ]]
473	then
474	printf "\n\n +++ configuration file: "
475	printf "\n $config_file"
476	printf "\n does not exist"
477	locat=connect; exit
478	fi
479
480
481	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
482	line=""
483	grep "%host_identifier" $config_file > tmp_mrun
484	while read line
485	do
486	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
487	then
488	HOSTNAME=`echo $line \| cut -d" " -s -f2`
489	host_identifier=`echo $line \| cut -d" " -s -f3`
490	if [[ $localhost_realname = $HOSTNAME ]]
491	then
492	localhost=$host_identifier
493	break
494	fi
495	fi
496	done < tmp_mrun
497
498	if [[ "$localhost" = "" ]]
499	then
500	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
501	printf "\n for local host \"$localhost_realname\"."
502	printf "\n Please add line"
503	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
504	printf "\n to the configuration file."
505	locat=localhost; exit
506	fi
507
508
509	# HOSTSPEZIFISCHE VARIABLEN SETZEN
510	case $localhost_realname in
511	(r1\|r2\|h01\|b01) archive_system=tivoli;;
512	(cs*) archive_system=ut;;
513	(fimm.bccs.uib.no) fimm=true;;
514	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
515	(scirocco) scirocco=true;;
516	esac
517
518
519
520	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
521	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
522	[[ "$afname" = "" ]] && afname=$fname
523
524
525	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
526	if [[ "$run_mode" != "" ]]
527	then
528	input_list="$input_list $run_mode"
529	output_list="$output_list $run_mode"
530	fi
531
532
533	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
534	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
535	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
536	# STARTET)
537	if [[ "$fromhost" = "" ]]
538	then
539	fromhost=$localhost
540	fi
541
542
543	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
544	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
545	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
546	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
547	if [[ -n $host && "$host" != $localhost ]]
548	then
549	do_batch=true
550	do_remote=true
551	case $host in
552	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|nech\|necriam\|lcflow\|lckyoto\|lcsgib\|lcsgih\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
553	(*) printf "\n"
554	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
555	printf "\n is not available"
556	locat=nqs; (( iec = 0 )); exit;;
557	esac
558	else
559	host=$localhost
560	fi
561
562
563	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
564	if [[ -n $additional_conditions ]]
565	then
566	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
567	cond1=`echo $additional_conditions \| cut -d" " -f1`
568	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
569	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
570	if [[ -n $dummy ]]
571	then
572	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
573	locat=options; exit
574	fi
575	block=_$cond1
576	[[ -n $cond2 ]] && block=${block}_$cond2
577	fi
578
579
580	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
581	if [[ $run_coupled_model = true ]]
582	then
583
584	if [[ -n $coupled_dist ]]
585	then
586
587	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
588	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
589
590	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
591	then
592
593	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
594	printf "\n PEs (total) : $numprocs"
595	printf "\n PEs (atmosphere): $numprocs_atmos"
596	printf "\n PEs (ocean) : $numprocs_ocean"
597	locat=coupling; exit
598
599	fi
600
601	else
602
603	(( numprocs_ocean = $numprocs / 2 ))
604	(( numprocs_atmos = $numprocs / 2 ))
605
606	fi
607	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
608
609	# GET coupled_mode FROM THE CONFIG FILE
610	line=""
611	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
612	while read line
613	do
614	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && $(echo $line \| cut -d" " -s -f4) = $cond1 && $(echo $line \| cut -d" " -s -f4) = $cond2 ]]
615	then
616	coupled_mode="mpi2"
617	fi
618	done < tmp_mrun
619
620	fi
621
622
623	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
624	# ARCHIVIERUNG FEHLGESCHLAGEN IST
625	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
626	then
627	if [[ $ignore_archive_error = false ]]
628	then
629	printf "\n +++ data archiving of previous run failed"
630	printf "\n see directory \~/job_queue on remote machine"
631	locat=archive; exit
632	else
633	printf "\n +++ warning: data archiving in a previous run failed"
634	printf "\n MRUN continues, trying to get backup copy"
635	fi
636	fi
637
638
639	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
640	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
641	mrun_memory=$memory
642	mrun_group_number=$group_number
643	mrun_cpumax=$cpumax
644	mrun_numprocs=$numprocs
645
646
647	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
648	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
649	if [[ "$read_from_config" = false ]]
650	then
651
652	[[ $silent = false ]] && printf "\n Reading the configuration file... "
653	while read zeile
654	do
655	[[ $silent = false ]] && printf "."
656
657
658	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
659	# ERSETZEN
660	eval zeile=\"$zeile\"
661
662
663	# INTERPRETATION DER ZEILE
664	if [[ "$(echo $zeile)" = "" ]]
665	then
666	# LEERZEILE, KEINE AKTION
667	continue
668
669	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
670	then
671
672	# ZEILE IST KOMMENTARZEILE
673	true
674
675	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
676	then
677
678	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
679	zeile=$(echo $zeile \| cut -c2-)
680	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
681	var=`echo $zeile \| cut -d" " -f1`
682	value=`echo $zeile \| cut -d" " -s -f2`
683	for_host=`echo $zeile \| cut -d" " -s -f3`
684	for_cond1=`echo $zeile \| cut -d" " -s -f4`
685	for_cond2=`echo $zeile \| cut -d" " -s -f5`
686
687	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
688	then
689
690	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
691	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
692	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
693
694
695	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
696	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
697	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
698	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
699	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
700	# KONFIGURATIONSDATEI
701	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
702	then
703	eval $var=\$value
704
705	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
706	if [[ $do_trace = true ]]
707	then
708	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
709	fi
710	fi
711
712	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
713	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
714	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
715	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
716	if [[ $var = host ]]
717	then
718	if [[ -n $host && "$host" != $localhost ]]
719	then
720	do_batch=true
721	do_remote=true
722	case $host in
723	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lcflow\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
724	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
725	printf "\n is not available"
726	locat=nqs; exit;;
727	esac
728	else
729	host=$localhost
730	fi
731	fi
732
733	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
734	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
735	# DEN PROGRAMMEN BENOETIGT WERDEN
736	export $var
737	fi
738
739
740
741
742	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
743	then
744
745	# ZEILE DEFINIERT ERROR-KOMMANDO
746	(( iec = iec + 1 ))
747	zeile=$(echo $zeile \| cut -c4-)
748	err_command[$iec]="$zeile"
749
750	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
751	then
752
753	# ZEILE DEFINIERT INPUT-KOMMANDO
754	(( iic = iic + 1 ))
755	zeile=$(echo $zeile \| cut -c4-)
756	in_command[$iic]="$zeile"
757
758	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
759	then
760
761	# ZEILE DEFINIERT OUTPUT-KOMMANDO
762	(( ioc = ioc + 1 ))
763	zeile=$(echo $zeile \| cut -c4-)
764	out_command[$ioc]="$zeile"
765
766	else
767
768	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
769	# s2a: in/out - Feld
770	# s2b: loc - Feld (optional)
771	# s2c: tr/ar - Feld (optional)
772	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
773	s1=`echo $zeile \| cut -d" " -f1`
774	s2=`echo $zeile \| cut -d" " -s -f2`
775	s2a=$(echo $s2 \| cut -d":" -f1)
776	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
777	then
778	s2b=""
779	s2c=""
780	else
781	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
782	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
783	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
784	fi
785	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
786	s3=`echo $zeile \| cut -d" " -f3`
787	s4=`echo $zeile \| cut -d" " -s -f4`
788	s5=`echo $zeile \| cut -d" " -s -f5`
789	s6=`echo $zeile \| cut -d" " -s -f6`
790
791
792	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
793	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
794	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
795	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
796	# HANDEN SEIN MUSS (D.H. s2b = loc)
797	IFSALT="$IFS"; IFS="$IFS:"
798	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
799	then
800	found=false
801	for actual in $input_list
802	do
803	for formal in $s3
804	do
805	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
806	done
807	done
808	if [[ $found = true ]]
809	then
810	(( iin = iin + 1 ))
811	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
812	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
813	extin[$iin]=$s6
814	fi
815	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
816	then
817	found=false
818	for actual in $output_list
819	do
820	for formal in $s3
821	do
822	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
823	done
824	done
825	if [[ $found = true ]]
826	then
827	(( iout = iout + 1 ))
828	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
829	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
830	fi
831	elif [[ "$s2a" != in && "$s2a" != out ]]
832	then
833	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
834	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
835	locat=connect; exit
836	fi
837	IFS="$IFSALT"
838	fi
839	done < $config_file
840
841	else
842
843
844	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
845	[[ $silent = false ]] && printf "..."
846	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
847	export interpreted_config_file=.icf.$RANDOM
848
849
850
851	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
852	# VERFUEGUNG STELLEN
853	cat > .mrun_environment << %%END%%
854	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
855	config_file = '$config_file', do_remote = '$do_remote',
856	do_trace = '$do_trace', host = '$host',
857	input_list = '$input_list', icf = '$interpreted_config_file',
858	localhost = '$localhost', output_list = '$output_list' /
859
860	%%END%%
861
862	if [[ $localhost_realname = "sx-fep" ]]
863	then
864	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
865	else
866
867	if [[ "$host" != $localhost ]]
868	then
869
870	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
871	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
872	if [[ $? != 0 ]]
873	then
874	printf "\n\n +++ no interpret_config found"
875	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
876	locat=interpret_config; exit
877	fi
878	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
879	$interpret_config_executable
880
881	else
882
883	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
884	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
885	then
886	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
887	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
888	locat=interpret_config; exit
889	else
890	interpret_config${block}.x
891	fi
892
893	fi
894	fi
895	rm .mrun_environment
896
897
898	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
899	chmod u+x $interpreted_config_file
900	export PATH=$PATH:.
901	. $interpreted_config_file
902	rm $interpreted_config_file
903
904	fi
905
906
907	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
908	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
909	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
910	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
911	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
912	[[ "$max_par_io_str" != "" ]] && maximum_parallel_io_streams=$max_par_io_str
913	[[ "$mrun_tasks_per_node" != "" ]] && tasks_per_node=$mrun_tasks_per_node
914
915
916	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
917	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
918	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
919	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
920	if [[ "$SOURCES_COMPLETE" = "" ]]
921	then
922
923	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
924	# VEREINBART WURDE
925	source_path=""
926	line=""
927	grep "%source_path" $config_file > tmp_mrun
928	while read line
929	do
930	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
931	then
932	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
933	then
934	global_source_path=`echo $line \| cut -d" " -f2`
935	fi
936	fi
937	done < tmp_mrun
938
939	line=""
940	found=false
941	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
942	while read line
943	do
944	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
945	then
946	if [[ $found = true ]]
947	then
948	printf "\n\n +++ more than one source path found in configuration file"
949	printf "\n for local host \"$localhost\" "
950	locat=source_path; exit
951	fi
952	source_path=`echo $line \| cut -d" " -f2`
953	found=true
954	fi
955	done < tmp_mrun
956	rm tmp_mrun
957
958	if [[ "$source_path" = "" ]]
959	then
960	if [[ "$global_source_path" != "" ]]
961	then
962	source_path=$global_source_path
963	else
964	printf "\n\n +++ no source path found in configuration file"
965	printf "\n for local host \"$localhost\" "
966	locat=source_path; exit
967	fi
968	fi
969	eval source_path=$source_path
970
971	if [[ ! -d $source_path ]]
972	then
973	printf "\n\n +++ source path \"$source_path\" on local host"
974	printf "\n \"$localhost\" does not exist"
975	locat=source_path; exit
976	fi
977
978	fi
979
980
981	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
982	# DURCH OPTION -G MITGETEILT)
983	if [[ "$global_revision" = "" && $host != "ibmkisti" ]]
984	then
985	global_revision=`svnversion $source_path 2>/dev/null`
986	global_revision="Rev: $global_revision"
987	fi
988
989
990	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
991	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
992	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
993	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
994	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
995	if [[ -n $host && "$host" != $localhost ]]
996	then
997	do_batch=true
998	do_remote=true
999	case $host in
1000	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lcflow\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
1001	(*) printf "\n"
1002	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
1003	printf "\n is not available"
1004	locat=nqs; (( iec = 0 )); exit;;
1005	esac
1006	else
1007	host=$localhost
1008	fi
1009
1010
1011	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
1012	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1013	then
1014
1015	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
1016	if [[ ! -n $numprocs ]]
1017	then
1018	printf "\n"
1019	printf "\n +++ option \"-K parallel\" requires additional specification"
1020	printf "\n of the number of processors to be used by"
1021	printf "\n mrun-option \"-X\" or by environment-variable"
1022	printf "\n \"numprocs\" in the configuration file"
1023	locat=numprocs; (( iec = 0 )); exit
1024	fi
1025
1026	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
1027	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
1028	# GESAMTPROZESSORANZAHL IST
1029	if [[ "$tasks_per_node" = "" && $host != lcflow && $host != lcxt5m ]]
1030	then
1031	printf "\n"
1032	printf "\n +++ option \"-T\" (tasks per node) is missing"
1033	printf "\n set -T option or define tasks_per_node in the config file"
1034	locat=tasks_per_node; (( iec = 0 )); exit
1035	fi
1036	if [[ $host != lcflow && $host != lcxt5m ]]
1037	then
1038	(( ival = $tasks_per_node ))
1039	(( pes = numprocs ))
1040	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1041	# then
1042	# (( pes = pes - 1 ))
1043	# fi
1044	(( ii = pes / ival ))
1045	if (( pes - ii * ival > 0 ))
1046	then
1047	printf "\n"
1048	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1049	printf "\n divisor of the total number of processors (option \"-X\")"
1050	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1051	locat=tasks_per_node; (( iec = 0 )); exit
1052	fi
1053	fi
1054
1055
1056	# IBMY HAT NUR EINEN KNOTEN
1057	if [[ $host = ibmy ]]
1058	then
1059	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1060	then
1061	printf "\n"
1062	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1063	printf "\n total number of processors (option \"-X\")"
1064	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1065	locat=tasks_per_node; (( iec = 0 )); exit
1066	fi
1067	fi
1068
1069
1070	# SETTINGS FOR SUBJOB-COMMAND
1071	OOPT="-O $threads_per_task"
1072
1073	# GESAMTZAHL DER KNOTEN BESTIMMEN
1074	if [[ "$tasks_per_node" != "" ]]
1075	then
1076	TOPT="-T $tasks_per_node"
1077	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1078	fi
1079
1080	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1081	# SETZEN
1082	if [[ $node_usage = default ]]
1083	then
1084	if [[ $host = ibms ]]
1085	then
1086	node_usage=shared
1087	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1088	then
1089	node_usage=singlejob
1090	else
1091	node_usage=not_shared
1092	fi
1093	fi
1094
1095	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
1096	then
1097	printf "\n"
1098	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1099	printf "\n \"shared\" or \"not_shared\""
1100	locat=tasks_per_node; (( iec = 0 )); exit
1101	fi
1102
1103	fi
1104
1105	# PRUEFEN, OB HOSTFILE EXISTIERT
1106	if [[ -n $hostfile ]]
1107	then
1108	if [[ ! -f $hostfile ]]
1109	then
1110	printf "\n"
1111	printf "\n +++ hostfile \"$hostfile\" does not exist"
1112	locat=hostfile; exit
1113	fi
1114	fi
1115
1116	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1117	if [[ $host = ibmy && $do_remote = false ]]
1118	then
1119	if [[ ! -f $HOME/.rhosts ]]
1120	then
1121	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1122	printf "\n\n *** file:"
1123	printf "\n $HOME/.rhosts"
1124	printf "\n was created\n"
1125	fi
1126	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1127	then
1128	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1129	printf "\n\n *** file:"
1130	printf "\n $HOME/.rhosts"
1131	printf "\n was extended by the name of the current host\n"
1132	fi
1133	fi
1134
1135
1136	# Set default value for the maximum number of parallel io streams
1137	if [[ "$maximum_parallel_io_streams" = "" ]]
1138	then
1139	maximum_parallel_io_streams=$numprocs
1140	fi
1141
1142
1143	# Set port number option for calls of ssh/scp, subjob and batch_scp scripts
1144	if [[ "$scp_port" != "" ]]
1145	then
1146	PORTOPT="-P $scp_port"
1147	SSH_PORTOPT="-p $scp_port"
1148	fi
1149
1150
1151	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1152	if [[ $queue = none ]]
1153	then
1154	case $host in
1155	(ibmh) queue=cluster;;
1156	(ibmkisti) queue=class.32plus;;
1157	(ibmy) queue=parallel;;
1158	(lckiaps) queue=normal;;
1159	(lckyoto) queue=ph;;
1160	(lckyuh) queue=fx-single;;
1161	(lckyut) queue=cx-single;;
1162	(lcsgib) queue=testq;;
1163	(lcsgih) queue=testq;;
1164	(lctit) queue=S;;
1165	(nech) queue=none;;
1166	(necriam) queue=SP;;
1167	(unics) queue=unics;;
1168	esac
1169	fi
1170
1171
1172	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1173	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1174	# ERMITTELN
1175	(( i = 0 ))
1176	while (( i < iin ))
1177	do
1178	(( i = i + 1 ))
1179	(( maxcycle = 0 ))
1180
1181	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1182	if [[ "${actionin[$i]}" = di ]]
1183	then
1184	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1185	# REM-MASCHINE AUSWERTEN
1186	eval filename=${pathin[$i]}/${endin[$i]}
1187	else
1188	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1189	# REM-MASCHINE AUSWERTEN
1190	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1191	fi
1192	eval pathname=${pathin[$i]}
1193
1194	# SAVE INPUT FILE NAME FOR PARAMETER FILE CHECK
1195	if [[ ("${transin[$i]}" = job) && (-f $filename) ]]
1196	then
1197	filename_input=$filename
1198	fi
1199
1200	# PRUEFEN AUF VORHANDENSEIN
1201	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1202	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1203	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1204	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1205	then
1206	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1207	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1208	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1209	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1210	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1211	if [[ "${transin[$i]}" != "locopt" ]]
1212	then
1213	printf "\n\n +++ INPUT-file: "
1214	if [[ "${extin[$i]}" = "" ]]
1215	then
1216	printf "\n $filename"
1217	else
1218	printf "\n $filename.${extin[$i]}"
1219	fi
1220	printf "\n does not exist\n"
1221	locat=input; exit
1222	else
1223	transin[$i]="unavailable"
1224	fi
1225	else
1226
1227	# ZYKLUSNUMMER FESTSTELLEN
1228	ls -1 -d $filename > filelist 2>/dev/null
1229	ls -1 -d $filename.* >> filelist 2>/dev/null
1230	while read zeile
1231	do
1232	cycle=$(echo $zeile \| cut -f2 -d".")
1233	if [[ "$cycle" = "$zeile" ]]
1234	then
1235	(( icycle = 0 ))
1236	elif [[ "$cycle" = "${extin[$i]}" ]]
1237	then
1238	(( icycle = 0 ))
1239	else
1240	(( icycle = $cycle ))
1241	fi
1242	if (( icycle > maxcycle ))
1243	then
1244	(( maxcycle = icycle ))
1245	file_to_be_used=$zeile
1246	fi
1247	done <filelist
1248	rm filelist
1249
1250	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1251	if (( maxcycle > 0 ))
1252	then
1253	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1254	then
1255	filename=${filename}.$maxcycle.${extin[$i]}
1256	else
1257	filename=${filename}.$maxcycle
1258	fi
1259	else
1260	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1261	then
1262	filename=${filename}.${extin[$i]}
1263	fi
1264	fi
1265
1266	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1267	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1268	absnamein[$i]=$filename
1269	if (( maxcycle > 0 ))
1270	then
1271	if [[ "${actionin[$i]}" = di ]]
1272	then
1273	frelin[$i]=${endin[$i]}.$maxcycle
1274	else
1275	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1276	fi
1277	else
1278	if [[ "${actionin[$i]}" = di ]]
1279	then
1280	frelin[$i]=${endin[$i]}
1281	else
1282	frelin[$i]=${afname}${endin[$i]}
1283	fi
1284	fi
1285
1286	fi
1287	done
1288
1289	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1290	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1291	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1292	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1293	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1294	(( i = 0 ))
1295	while (( i < iout ))
1296	do
1297	(( i = i + 1 ))
1298	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1299	then
1300	if [[ "${actionout[$i]}" = tr ]]
1301	then
1302	actionout[$i]=""
1303	elif [[ "${actionout[$i]}" = trpe ]]
1304	then
1305	actionout[$i]=pe
1306	elif [[ "${actionout[$i]}" = tra ]]
1307	then
1308	actionout[$i]=a
1309	fi
1310	(( maxcycle = 0 ))
1311	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1312	eval catalogname=${pathout[$i]}
1313	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1314	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1315	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1316	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1317	then
1318
1319	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1320	if cat /dev/null > $filename
1321	then
1322	rm $filename
1323	else
1324
1325	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1326	if [[ ! -d $catalogname ]]
1327	then
1328	if mkdir -p $catalogname
1329	then
1330	printf "\n\n *** directory:"
1331	printf "\n $catalogname"
1332	printf "\n was created\n"
1333	else
1334	printf "\n\n +++ OUTPUT-file:"
1335	printf "\n $filename"
1336	printf "\n cannot be created, because directory does not exist"
1337	printf "\n and cannot be created either"
1338	printf "\n"
1339	locat=output ; exit
1340	fi 2>/dev/null
1341	else
1342	printf "\n\n +++ OUTPUT-file:"
1343	printf "\n $filename"
1344	printf "\n cannot be created, although directory exists"
1345	printf "\n"
1346	locat=output ; exit
1347	fi
1348	fi 2>/dev/null
1349	else
1350
1351	# ZYKLUSNUMMER FESTSTELLEN
1352	ls -1 -d $filename > filelist 2>/dev/null
1353	ls -1 -d $filename.* >> filelist 2>/dev/null
1354	while read zeile
1355	do
1356	cycle=$(echo $zeile \| cut -f2 -d".")
1357	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1358	then
1359	(( icycle = 1 ))
1360	else
1361	(( icycle = $cycle + 1 ))
1362	fi
1363	if (( icycle > maxcycle ))
1364	then
1365	(( maxcycle = icycle ))
1366	fi
1367	done <filelist
1368	rm filelist
1369	fi
1370
1371	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1372	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1373	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1374	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1375	if [[ "${actionout[$i]}" != a ]]
1376	then
1377	if (( maxcycle > 0 ))
1378	then
1379	filename=${filename}.$maxcycle
1380	if cat /dev/null > $filename
1381	then
1382	rm $filename
1383	else
1384	printf "\n +++ OUTPUT-file:"
1385	printf "\n $filename"
1386	printf "\n cannot be created"
1387	locat=output ; exit
1388	fi
1389	fi
1390	else
1391	(( maxcycle = maxcycle - 1 ))
1392	if (( maxcycle > 0 ))
1393	then
1394	filename=${filename}.$maxcycle
1395	fi
1396	fi
1397
1398	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1399	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1400	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1401	pathout[$i]=$filename
1402	if (( maxcycle > 0 ))
1403	then
1404	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1405	else
1406	frelout[$i]=${fname}${endout[$i]}
1407	fi
1408
1409	fi
1410	done
1411
1412
1413	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1414	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1415	then
1416	if [[ "$dvr_inc" = "" ]]
1417	then
1418	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1419	printf "\n This is required for the dvrp_graphics package.\n"
1420	locat=dvr; exit
1421	fi
1422	if [[ "$dvr_lib" = "" ]]
1423	then
1424	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1425	printf "\n This is required for the dvrp_graphics package.\n"
1426	locat=dvr; exit
1427	fi
1428	fi
1429
1430
1431	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1432	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1433	# UEBERSETZT ZU WERDEN)
1434	if [[ "$mainprog" = "" && "$executable" = "" ]]
1435	then
1436	printf "\n +++ neither main program nor executable defined"
1437	locat=source; exit
1438	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1439	then
1440	printf "\n +++ main program as well as executable defined"
1441	locat=source; exit
1442	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1443	then
1444	do_compile=false
1445	fi
1446
1447
1448	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1449	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1450	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1451	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1452	then
1453	rm -rf SOURCES_FOR_RUN_$fname
1454	mkdir SOURCES_FOR_RUN_$fname
1455	fi
1456
1457
1458	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1459	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1460	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1461	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1462	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1463	then
1464
1465	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1466
1467	if [[ "$source_list" = LOCALLY_MODIFIED ]]
1468	then
1469
1470	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1471	source_list=""
1472	cd $source_path
1473
1474
1475	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1476	if [[ ! -d .svn ]]
1477	then
1478	printf "\n\n +++ source directory"
1479	printf "\n \"$source_path\" "
1480	printf "\n is not under control of \"subversion\"."
1481	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1482	fi
1483
1484
1485	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1486	Filenames=""
1487	svn status > tmp_mrun
1488	while read line
1489	do
1490	firstc=`echo $line \| cut -c1`
1491	if [[ $firstc = M \|\| $firstc = "?" ]]
1492	then
1493	Name=`echo "$line" \| cut -c8-`
1494	extension=`echo $Name \| cut -d. -f2`
1495	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1496	then
1497	Filenames="$Filenames "$Name
1498	fi
1499	fi
1500	done < tmp_mrun
1501
1502
1503	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1504	for dateiname in $Filenames
1505	do
1506	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1507	source_list=$source_list"$dateiname "
1508	done
1509
1510	cd - > /dev/null
1511
1512
1513	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1514	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1515	# VORHANDEN
1516	elif [[ "$source_list" != "" && $restart_run != true ]]
1517	then
1518
1519	cd $source_path
1520
1521	for filename in $source_list
1522	do
1523
1524	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1525	if [[ $(echo $filename \| grep -c "/") != 0 ]]
1526	then
1527	printf "\n +++ source code file: $filename"
1528	printf "\n must not contain (\"/\") "
1529	locat=source; exit
1530	fi
1531
1532	if [[ ! -f $filename ]]
1533	then
1534	printf "\n +++ source code file: $filename"
1535	printf "\n does not exist"
1536	locat=source; exit
1537	else
1538	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1539	fi
1540
1541	done
1542
1543	cd - > /dev/null
1544
1545	fi
1546
1547
1548	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1549	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1550	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1551	if [[ $restart_run != true ]]
1552	then
1553
1554	if [[ ! -f "$source_path/$mainprog" ]]
1555	then
1556	printf "\n\n +++ main program: $mainprog"
1557	printf "\n does not exist in source directory"
1558	printf "\n \"$source_path\"\n"
1559	locat=source; exit
1560	else
1561	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1562	then
1563	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1564	source_list=${mainprog}" $source_list"
1565	fi
1566	fi
1567	fi
1568
1569
1570	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1571	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1572	if [[ "$restart_run" != true ]]
1573	then
1574	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1575	if [[ ! -f $makefile ]]
1576	then
1577	printf "\n +++ file \"$makefile\" does not exist"
1578	locat=make; exit
1579	else
1580	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1581	fi
1582	fi
1583
1584
1585	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1586	if [[ $restart_run != true && "$add_source_path" != "" ]]
1587	then
1588
1589	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1590	if [[ ! -d $add_source_path ]]
1591	then
1592	printf "\n\n +++ WARNING: additional source code directory"
1593	printf "\n \"$add_source_path\" "
1594	printf "\n does not exist or is not a directory."
1595	printf "\n No source code will be used from this directory!\n"
1596	add_source_path=""
1597	if [[ $silent == false ]]
1598	then
1599	sleep 3
1600	fi
1601	else
1602
1603	cd $add_source_path
1604	found=false
1605
1606	Names=$(ls -1 *.f90 2>&1)
1607	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1608	Names=$(ls -1 *.F90 2>&1)
1609	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1610	Names=$(ls -1 *.F 2>&1)
1611	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1612	Names=$(ls -1 *.f 2>&1)
1613	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1614	Names=$(ls -1 *.c 2>&1)
1615	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1616
1617	cd - > /dev/null
1618	cd SOURCES_FOR_RUN_$fname
1619
1620	# COPY MAKEFILE IF EXISTING
1621	if [[ -f $add_source_path/Makefile ]]
1622	then
1623	printf "\n\n *** user Makefile from directory"
1624	printf "\n \"$add_source_path\" is used \n"
1625	if [[ $silent == false ]]
1626	then
1627	sleep 1
1628	fi
1629	cp $add_source_path/Makefile .
1630	fi
1631
1632	for dateiname in $AddFilenames
1633	do
1634	if [[ -f $dateiname ]]
1635	then
1636	printf "\n +++ source code file \"$dateiname\" found in additional"
1637	printf "\n source code directory \"$add_source_path\" "
1638	printf "\n but was also given with option \"-s\" which means that it should be taken"
1639	printf "\n from directory \"$source_path\"."
1640	locat=source; exit
1641	fi
1642
1643	cp $add_source_path/$dateiname .
1644	source_list="$source_list $dateiname"
1645
1646	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1647	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1648	then
1649	printf "\n\n +++ user file \"$dateiname\" "
1650	printf "\n is not listed in Makefile \n"
1651	locat=source; exit
1652	else
1653
1654	# Default User-Interface von der Liste entfernen, falls Datei
1655	# ein User-Interface enthaelt
1656	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1657	# then
1658	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1659	# then
1660	# rm -rf user_interface.f90
1661	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1662	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1663	# printf "\n since a user-interface is found in file"
1664	# printf "\n \"$add_source_path/$dateiname\" \n"
1665	# sleep 3
1666	# else
1667	if [[ $found = false ]]
1668	then
1669	found=true
1670	printf "\n\n *** following user file(s) added to the"
1671	printf " files to be translated:\n "
1672	fi
1673	printf "$dateiname "
1674	if [[ $silent == false ]]
1675	then
1676	sleep 0.5
1677	fi
1678
1679	fi
1680	done
1681	[[ $found = true ]] && printf "\n"
1682	cd - > /dev/null
1683	fi
1684	fi
1685
1686
1687	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1688	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1689	if [[ $restart_run != true && -n $package_list ]]
1690	then
1691
1692	cd $source_path
1693
1694	for package in $package_list
1695	do
1696
1697	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1698
1699	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1700	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1701	# LIEFERT
1702	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1703
1704
1705	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1706	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1707	for source_list_name in $package_source_list
1708	do
1709	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1710	then
1711
1712	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1713	ending=`echo $source_list_name \| cut -f2 -d.`
1714	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1715	then
1716	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1717	source_list="$source_list $source_list_name"
1718	fi
1719	fi
1720	done
1721	done
1722
1723	cd - > /dev/null
1724	fi
1725
1726
1727	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1728	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1729	# if [[ "$restart_run" != true ]]
1730	# then
1731	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1732	# if [[ ! -f $makefile ]]
1733	# then
1734	# printf "\n +++ file \"$makefile\" does not exist"
1735	# locat=make; exit
1736	# else
1737	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1738	# fi
1739	# fi
1740
1741	fi # do_compile=true
1742
1743
1744	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1745	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1746	if [[ $do_compile = true ]]
1747	then
1748
1749	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1750	# ZUSAMMENSETZEN
1751	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1752	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1753	then
1754	cpp_options="${cpp_options},-D__ibm=__ibm"
1755	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1756	then
1757	cpp_options="$cpp_options -D__nec"
1758	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1759	then
1760	cpp_options="$cpp_options -D__lc"
1761	else
1762	cpp_options="$cpp_options -D__$localhost"
1763	fi
1764
1765	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1766	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1767	then
1768	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1769	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1770	else
1771	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1772	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1773	fi
1774
1775	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1776	if [[ -n $package_list ]]
1777	then
1778	for package in $package_list
1779	do
1780	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1781	then
1782	if [[ $package != "dvrp_graphics+1PE" ]]
1783	then
1784	cpp_options="${cpp_options},-D__$package=__$package"
1785	else
1786	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1787	export use_seperate_pe_for_dvrp_output=true
1788	fi
1789	else
1790	if [[ $package != "dvrp_graphics+1PE" ]]
1791	then
1792	cpp_options="$cpp_options -D__$package"
1793	else
1794	cpp_options="$cpp_options -D__dvrp_graphics"
1795	export use_seperate_pe_for_dvrp_output=true
1796	fi
1797	fi
1798	done
1799	fi
1800
1801	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1802	if [[ -n $cpp_opts ]]
1803	then
1804	for popts in $cpp_opts
1805	do
1806	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1807	then
1808	cpp_options="${cpp_options},-D__$popts=__$popts"
1809	else
1810	cpp_options="$cpp_options -D__$popts"
1811	fi
1812	done
1813	fi
1814
1815	else
1816
1817
1818	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1819	if [[ $do_remote = false ]]
1820	then
1821	if [[ ! -f $executable ]]
1822	then
1823	printf "\n +++ executable file: $executable"
1824	printf "\n does not exist"
1825	locat=executable; exit
1826	fi
1827	fi
1828	fi
1829
1830
1831	# JOBMODUS FESTSTELLEN
1832	if [[ "$ENVIRONMENT" = BATCH ]]
1833	then
1834	jobmo=BATCH
1835	else
1836	jobmo=INTERACTIVE
1837	fi
1838
1839
1840	# no interactive runs on lctit
1841	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
1842	then
1843	printf "\n +++ no interactive runs allowed on host \"$host\" "
1844	printf "\n please submit batch job using mrun option \"-b\" \n"
1845	locat=normal; exit
1846	fi
1847
1848
1849	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1850	# DURCH BENUTZER ANDERWEITIG VEREINBART
1851	if [[ "$compiler_name" = "" ]]
1852	then
1853
1854	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
1855	locat=compiler_name; exit
1856
1857	fi
1858
1859
1860	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
1861	[[ $localhost = necriam ]] && compiler_name=mpif90
1862
1863
1864
1865	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
1866	kennung=$RANDOM
1867	if [[ "$tmp_user_catalog" = "" ]]
1868	then
1869	if [[ $localhost = ibmh ]]
1870	then
1871	tmp_user_catalog=$SCRATCH
1872	elif [[ $localhost = nech ]]
1873	then
1874	tmp_user_catalog=$WRKSHR
1875	else
1876	tmp_user_catalog=/tmp
1877	fi
1878	fi
1879	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
1880
1881
1882	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
1883	# BESTIMMEN
1884	if [[ "$tmp_data_catalog" = "" ]]
1885	then
1886	if [[ $localhost = nech ]]
1887	then
1888	tmp_data_catalog=$WRKSHR/mrun_restart_data
1889	else
1890	tmp_data_catalog=/tmp/mrun_restart_data
1891	fi
1892	fi
1893
1894
1895	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
1896	# ERSETZEN
1897	if [[ $do_remote = false && $do_compile = true ]]
1898	then
1899	eval fopts=\"$fopts\"
1900	eval lopts=\"$lopts\"
1901	fi
1902
1903
1904
1905	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
1906	fopts="$fopts $netcdf_inc $dvr_inc"
1907	lopts="$lopts $netcdf_lib $dvr_lib"
1908	ROPTS="$ropts"
1909	# if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcflow \|\| $host = lcxe6 \|\| $host = lcxt5m \|\| $host = lck \|\| $host = lckiaps \|\| $host = lckordi \|\| $host = lcsb \|\| $host ) && -n $numprocs ]]
1910	# then
1911	XOPT="-X $numprocs"
1912	# fi
1913
1914
1915
1916	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
1917	# GRAMM BENOETIGT
1918	done=false
1919	while [[ $done = false ]]
1920	do
1921	cputime=$cpumax
1922	if (( $cputime == 0 ))
1923	then
1924	if [[ $do_batch = true ]]
1925	then
1926	printf "\n +++ cpu-time is undefined"
1927	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
1928	printf "\n >>> "
1929	read cputime 1>/dev/null 2>&1
1930	else
1931	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
1932	fi
1933	else
1934	done=true
1935	fi
1936	cpumax=$cputime
1937	done
1938
1939	(( minuten = cputime / 60 ))
1940	(( sekunden = cputime - minuten * 60 ))
1941
1942
1943	# PRUEFEN DER KERNSPEICHERANFORDERUNG
1944	if [[ $do_batch = true ]]
1945	then
1946	done=false
1947	while [[ $done = false ]]
1948	do
1949	if (( memory == 0 ))
1950	then
1951	printf "\n +++ memory demand is undefined"
1952	printf "\n >>> Please type memory in MByte per process as INTEGER:"
1953	printf "\n >>> "
1954	read memory 1>/dev/null 2>&1
1955	else
1956	done=true
1957	fi
1958	done
1959	fi
1960
1961
1962	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
1963	if [[ $do_remote = true && -z $remote_username ]]
1964	then
1965	while [[ -z $remote_username ]]
1966	do
1967	printf "\n +++ username on remote host \"$host\" is undefined"
1968	printf "\n >>> Please type username:"
1969	printf "\n >>> "
1970	read remote_username
1971	done
1972	mc="$mc -u$remote_username"
1973	fi
1974
1975	# CHECK FOR INITIAL COMMANDS AFTER LOGIN
1976	if [[ "$login_init_cmd" != "" ]]
1977	then
1978	export init_cmds="${login_init_cmd};"
1979	fi
1980
1981
1982	# set module load command and export for subjob
1983	if [[ "$modules" != "" ]]
1984	then
1985	if [[ $host = lctit ]]
1986	then
1987	export module_calls=". $modules"
1988	else
1989	export module_calls="module load ${modules};"
1990	fi
1991	fi
1992
1993	# bugfix for wrong netcdf module and for netCDF4 usage in case of mpt
1994	if [[ $host = lcsgib \|\| $host = lcsgih ]]
1995	then
1996	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
1997	then
1998	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
1999	fi
2000	# if [[ $(echo $module_calls \| grep -c mpt) != 0 ]]
2001	# then
2002	# export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/sgi/mpt/2011-02-07/lib:\$LD_LIBRARY_PATH;"
2003	# echo "*** module_calls = $module_calls"
2004	# fi
2005	fi
2006
2007
2008	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
2009	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2010	then
2011	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
2012	then
2013	mpilib=mpt
2014	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
2015	then
2016	mpilib=mvapich
2017	elif [[ $(echo $modules \| grep -c impi ) != 0 ]]
2018	then
2019	mpilib=impi
2020	fi
2021	fi
2022
2023
2024
2025	###########################################################################
2026	# HEADER-AUSGABE
2027	###########################################################################
2028
2029
2030	calltime=$(date)
2031	printf "\n"
2032	# [[ $silent = false ]] && clear
2033	printf "#------------------------------------------------------------------------# \n"
2034	printf "\| %-35s%35s \| \n" "$version" "$calltime"
2035	printf "\| \| \n"
2036	spalte1="called on:"; spalte2=$localhost_realname
2037	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2038	if [[ $local_compile = false ]]
2039	then
2040	if [[ $do_remote = true ]]
2041	then
2042	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2043	else
2044	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2045	fi
2046	else
2047	spalte1="compiling test only!"; spalte2=""
2048	fi
2049	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2050	if [[ -n $numprocs ]]
2051	then
2052	if [[ $run_coupled_model = false ]]
2053	then
2054	spalte1="number of PEs:"; spalte2=$numprocs
2055	else
2056	spalte1="number of PEs:"; spalte2="$numprocs (atmosphere: $numprocs_atmos, ocean: $numprocs_ocean)"
2057	fi
2058	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2059	fi
2060	if [[ -n $tasks_per_node ]]
2061	then
2062	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2063	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2064	fi
2065	if [[ $maximum_parallel_io_streams != $numprocs ]]
2066	then
2067	spalte1="max par io streams:"; spalte2="$maximum_parallel_io_streams"
2068	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2069	fi
2070	if [[ $use_openmp = true ]]
2071	then
2072	spalte1="threads per task:"; spalte2="$threads_per_task"
2073	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2074	fi
2075	printf "\| \| \n"
2076	if [[ $do_compile = true ]]
2077	then
2078	if [[ "$mopts" != "" ]]
2079	then
2080	spalte1="make options:"; spalte2=$(echo "$mopts" \| cut -c-45)
2081	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2082	zeile=$(echo "$mopts" \| cut -c46-)
2083	while [[ "$zeile" != "" ]]
2084	do
2085	spalte1=""
2086	spalte2=$(echo "$zeile" \| cut -c-45)
2087	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2088	zeile=$(echo "$zeile" \| cut -c46-)
2089	done
2090	fi
2091
2092	spalte1="cpp directives:"; spalte2=$(echo "$cpp_options" \| cut -c-45)
2093	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2094	zeile=$(echo "$cpp_options" \| cut -c46-)
2095	while [[ "$zeile" != "" ]]
2096	do
2097	spalte1=""
2098	spalte2=$(echo "$zeile" \| cut -c-45)
2099	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2100	zeile=$(echo "$zeile" \| cut -c46-)
2101	done
2102
2103	spalte1="compiler options:"; spalte2=$(echo "$fopts" \| cut -c-45)
2104	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2105	zeile=$(echo "$fopts" \| cut -c46-)
2106	while [[ "$zeile" != "" ]]
2107	do
2108	spalte1=""
2109	spalte2=$(echo "$zeile" \| cut -c-45)
2110	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2111	zeile=$(echo "$zeile" \| cut -c46-)
2112	done
2113
2114	spalte1="linker options:"; spalte2=$(echo "$lopts" \| cut -c-45)
2115	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2116	zeile=$(echo "$lopts" \| cut -c46-)
2117	while [[ "$zeile" != "" ]]
2118	do
2119	spalte1=""
2120	spalte2=$(echo "$zeile" \| cut -c-45)
2121	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2122	zeile=$(echo "$zeile" \| cut -c46-)
2123	done
2124
2125	spalte1="modules to be load:"; spalte2=$(echo "$modules" \| cut -c-45)
2126	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2127	zeile=$(echo "$modules" \| cut -c46-)
2128	while [[ "$zeile" != "" ]]
2129	do
2130	spalte1=""
2131	spalte2=$(echo "$zeile" \| cut -c-45)
2132	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2133	zeile=$(echo "$zeile" \| cut -c46-)
2134	done
2135
2136	spalte1="main program:"; spalte2=$mainprog
2137	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2138	else
2139	spalte1=executable:; spalte2=$executable
2140	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2141	fi
2142	printf "\| \| \n"
2143	spalte1="base name of files:"; spalte2=$fname
2144	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2145	if [[ $fname != $afname ]]
2146	then
2147	spalte1="base name of input files:"; spalte2=$afname
2148	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2149	fi
2150	spalte1="INPUT control list:"; spalte2=$(echo $input_list)
2151	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2152	spalte1="OUTPUT control list:"; spalte2=$(echo $output_list)
2153	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2154
2155	if [[ "$ocean_file_appendix" = true ]]
2156	then
2157	printf "\| %-35s%-35s \| \n" "suffix \"_O\" is added to local files" " "
2158	fi
2159
2160	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2161	then
2162	spalte1="memory demand / PE":; spalte2="$memory MB"
2163	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2164	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2165	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2166	fi
2167
2168	if [[ $do_compile = true ]]
2169	then
2170	printf "\| \| \n"
2171	printf "\| Files to be compiled: \| \n"
2172	zeile=$source_list
2173	while [[ "$zeile" != "" ]]
2174	do
2175	linestart=$(echo $zeile \| cut -c-70)
2176	printf "\| %-70s \| \n" "$linestart"
2177	zeile=$(echo "$zeile" \| cut -c71-)
2178	done
2179	fi
2180	printf "#------------------------------------------------------------------------#"
2181
2182
2183
2184	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2185	if [[ $do_trace = true ]]
2186	then
2187	(( i = 0 ))
2188	while (( i < iin ))
2189	do
2190	(( i = i + 1 ))
2191	if (( i == 1 ))
2192	then
2193	printf "\n\n >>> INPUT-file assignments:\n"
2194	fi
2195	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2196	done
2197	(( i = 0 ))
2198	while (( i < iout ))
2199	do
2200	(( i = i + 1 ))
2201	if (( i == 1 ))
2202	then
2203	printf "\n\n >>> OUTPUT-file assignments:\n"
2204	fi
2205	printf "\n ${localout[$i]} : ${pathout[$i]}"
2206	done
2207	(( i = 0 ))
2208	while (( i < iic ))
2209	do
2210	(( i = i + 1 ))
2211	if (( i == 1 ))
2212	then
2213	printf "\n\n >>> INPUT-commands:\n"
2214	fi
2215	printf "\n ${in_command[$i]}"
2216	done
2217	(( i = 0 ))
2218	while (( i < ioc ))
2219	do
2220	(( i = i + 1 ))
2221	if (( i == 1 ))
2222	then
2223	printf "\n\n >>> OUTPUT-commands:\n"
2224	fi
2225	printf "\n ${out_command[$i]}"
2226	done
2227	fi
2228
2229
2230	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2231	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2232	then
2233	antwort=dummy
2234	printf "\n\n"
2235	printf " >>> everything o.k. (y/n) ? "
2236	while read antwort
2237	do
2238	if [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2239	then
2240	printf " >>> everything o.k. (y/n) ? "
2241	else
2242	break
2243	fi
2244	done
2245	if [[ $antwort = n \|\| $antwort = N ]]
2246	then
2247	locat=user_abort; (( iec = 0 )); exit
2248	fi
2249	if [[ $do_batch = true ]]
2250	then
2251	printf " >>> batch-job will be created and submitted"
2252	else
2253	if [[ $local_compile = false ]]
2254	then
2255	printf " >>> MRUN will now continue to execute on this machine"
2256	else
2257	printf " >>> a test compilation will now be carried out on this machine"
2258	fi
2259	fi
2260	fi
2261
2262
2263	# PERFORM PARAMETER FILE CHECK (COUPLED RUNS ARE NOT SUPPORTED YET)
2264	# DEFINE VARIABLES FOR FREQUENTLY USED DIRECTORIES
2265	check_depository="${working_directory}/trunk/UTIL"
2266	check_sources="${working_directory}/tmp_check_namelist_files"
2267	skip_check=false
2268
2269	# CHECK IF NAMELIST_FILE_CHECK HAS BEEN COMPILED SUCCESSFULLY
2270	if [[ ! -f $check_depository/check_namelist_files.tar ]]
2271	then
2272	skip_check=true
2273	reason="run on remote host or parameter file check has not been compiled."
2274	fi
2275	if [[ ! -f $PALM_BIN/check_namelist_files.x ]]
2276	then
2277	skip_check=true
2278	reason="parameter file check has not been compiled."
2279	fi
2280
2281	# CHECK FOR PARALLEL RUN; OTHERWISE SKIP CHECK
2282	if [[ "$cond1" != "parallel" && "$cond2" != "parallel" ]]
2283	then
2284	skip_check=true
2285	reason="serial run."
2286	fi
2287
2288	# ONLY PERFORM CHECK IF -z OPTION IS NOT SET, NO RESTART RUN IS CARRIED OUT
2289	# AND IF THE EXECUTION HOST IS THE LOCAL HOST
2290	# ATTENTION: THIS ROUTINE DOES NOT WORK IF THE COMPILER ON THE LOCAL HOST
2291	# DIFFERS FROM THE COMPILER ON THE REMOTE HOST
2292	if [[ $check_namelist_files == false ]]
2293	then
2294	skip_check=true
2295	reason="-z option set."
2296	fi
2297
2298	if [[ $fromhost != $localhost ]]
2299	then
2300	skip_check=true
2301	reason="submitting host is local host."
2302	fi
2303
2304	if [[ $run_coupled_model == true ]]
2305	then
2306	skip_check=true
2307	reason="coupled run."
2308	fi
2309
2310	if [[ $restart_run == true ]]
2311	then
2312	skip_check=true
2313	reason="restart run."
2314	fi
2315
2316	# SKIP CHECK IN CASE OF RESTART RUN: CHECK WHETHER THE LAST CHAR IS "f" IN PARIN
2317	(( last_char_int = `echo $filename_input \| wc -c` - 1 ))
2318	last_char=`echo $filename_input \| cut -c $last_char_int`
2319	if [[ "$last_char" == "f" ]]
2320	then
2321	skip_check=true
2322	reason="restart run."
2323	fi
2324
2325	if [[ $skip_check == false ]]
2326	then
2327	tmp_check=${working_directory}/tmp_check
2328
2329	# GET TOPOGRAPHY PARAMETER FILE SUFFIX (USUALLY "_P3DF"). THIS FILE MIGHT IS
2330	# NOT NECESSARILY REQUIRED
2331	line=""
2332	found=false
2333	grep "TOPOGRAPHY_DATA" $config_file > $tmp_check
2334	while read line1
2335	do
2336	line="$line1"
2337	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2338	then
2339	topo_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2340	found=true
2341	fi
2342	done < $tmp_check
2343
2344	if [[ $found = false ]]
2345	then
2346	printf "\n +++ no TOPOGRAPHY list entry found in the configuration file."
2347	fi
2348
2349	rm -rf ${working_directory}/tmp_check
2350
2351	# CHECK IF THE A P3DF FILE MUST BE CHECKED
2352	for item in $input_list
2353	do
2354	if [[ "$item" == "restart" ]]
2355	then
2356	check_restart=1
2357	else
2358	check_restart=0
2359	fi
2360	done
2361
2362	# ERROR IF NO PARAMETER FILE WAS FOUND, OTHERWISE PROCEED
2363	if [[ (! -f $filename_input) && ( "$filename_input" != "" ) ]]
2364	then
2365	printf "\n\n +++ ERROR: parameter file ($filename_input) not found."
2366	locat=check_namelist; exit
2367	fi
2368
2369	# CHECK IF THE RESTART PARAMETER FILE EXISTS (IF NECESSARY)
2370	if [[ $check_restart == 1 ]]
2371	then
2372
2373	filenamef="${filename_input}f"
2374	if [[ ! -f $filenamef ]]
2375	then
2376	printf "\n\n +++ WARNING: restart parameter file ($filenamef) is missing."
2377	check_restart=0
2378	answer=dummy
2379	printf "\n\n"
2380
2381	if [[ $silent == false ]]
2382	then
2383	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2384	do
2385	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2386	read answer
2387	done
2388	if [[ $answer = a \|\| $answer = A ]]
2389	then
2390	printf "\n +++ Aborting...."
2391	locat=normal; exit
2392	fi
2393	fi
2394	else
2395	check_restart=1
2396	fi
2397	fi
2398
2399	# CREATE TEMPORARY SOURCES_FOR_CHECK PATH
2400	mkdir $check_sources
2401	cd $check_sources
2402
2403
2404	# CHECK FOR USER CODE, OTHERWISE USE THE PRECOMPILED CHECK_NAMELIST_FILES.X
2405	if [[ -d $add_source_path ]]
2406	then
2407	printf "\n\n *** copying files from $check_depository"
2408	cp $check_depository/check_namelist_files.tar ./
2409
2410	printf "\n\n *** untar of makefile and source files in $check_sources"
2411	tar -xf check_namelist_files.tar > /dev/null 2>&1
2412
2413	printf "\n\n *** adding user code."
2414	cp $add_source_path/* ./
2415	touch check_namelist_files.f90
2416
2417	# GET COMPILER OPTIONS AND PERFORM MAKE
2418	printf "\n\n *** compiling code if necessary...\n"
2419
2420	# workaround for batch jobs on local machine (lcxe6)
2421	if [[ $do_batch == true && $do_remote == false ]]
2422	then
2423	eval $init_cmds
2424	fi
2425
2426	# GET CHECK OPTIONS
2427	line=""
2428	found=false
2429
2430	grep "$localhost" ${base_directory}/${config_file} \| grep "%cpp_options" > $tmp_check
2431
2432	while read line1
2433	do
2434
2435	if [[ $(echo $line1 \| cut -d" " -s -f3-) = "$localhost" ]]
2436	then
2437	line="$line1"
2438	fi
2439
2440	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2441	then
2442	# EVENTUELLE DOPPELPUNKTE AUS OPTIONSSTRING UND ALLE -D ENTFERNEN
2443	line="$line "
2444	copts_check=`echo $line \| cut -d" " -s -f2 \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g' \| sed 's/-D[^ ]* //g' \| sed 's/ -D.*//g'`
2445	found=true
2446	fi
2447
2448	done < $tmp_check
2449	copts_check="$copts_check -D__check -D__parallel"
2450
2451	make -f Makefile_check F90=$compiler_name_ser COPT="$copts_check"
2452
2453	# GET MAKE OUTPUT
2454	if [[ $? != 0 ]]
2455	then
2456	printf "\n +++ error during make."
2457	answer=dummy
2458	printf "\n\n"
2459	if [[ $silent == false ]]
2460	then
2461	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2462	do
2463	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2464	read answer
2465	done
2466	if [[ $answer = a \|\| $answer = A ]]
2467	then
2468	printf "\n +++ Aborting..."
2469	rm -rf $check_sources
2470	locat=normal; exit
2471	else
2472	skip_check=true
2473	fi
2474	else
2475	skip_check=true
2476	fi
2477	fi
2478	else
2479	cp $PALM_BIN/check_namelist_files.x ./
2480	fi
2481
2482	cp $filename_input ./PARIN
2483	if [[ $check_restart == 1 ]]
2484	then
2485	cp $filenamef ./PARINF
2486	fi
2487
2488	if [[ -f ${pathname}/${fname}${topo_suffix} && $skip_check == false ]]
2489	then
2490	printf "\n *** adding topography data"
2491	cp ${pathname}/${fname}${topo_suffix} ./TOPOGRAPHY_DATA
2492
2493	# IN CASE OF TOPOGRAPHY AND HIGH GRID POINT NUMBERS, THE STACK SIZE
2494	# MUST BE INCREASED. THIS IS DUE TO THE ARRAY nzb_local AND topo_height,
2495	# WHICH REQUIRE SUFFICIENT MEMORY
2496	ulimit -s unlimited
2497	fi
2498
2499	# CREATE ENVPAR FILE, WHICH IS NEEDED BY CHECK_NAMELIST_FILES.X
2500	cat > ENVPAR << %%END%%
2501	&envpar run_identifier = '$fname', host = '$host',
2502	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2503	maximum_parallel_io_streams = $maximum_parallel_io_streams,
2504	maximum_cpu_time_allowed = ${cpumax}.,
2505	revision = '$global_revision',
2506	local_dvrserver_running = $local_dvrserver_running /
2507
2508	%%END%%
2509
2510	# SAFETY CHECK: ONLY PROCEED IF THE PARAMETER CHECK PROGRAM WAS PROPERLY COMPILED
2511	if [[ ! -f check_namelist_files.x && $skip_check == false ]]
2512	then
2513	printf "\n +++ WARNING: check_namelist_files.x not found."
2514	answer=dummy
2515	printf "\n\n"
2516
2517	if [[ $silent == false ]]
2518	then
2519	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2520	do
2521	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2522	read answer
2523	done
2524	if [[ $answer = a \|\| $answer = A ]]
2525	then
2526	printf "\n +++ Aborting..."
2527	rm -rf $check_sources
2528	locat=normal; exit
2529	else
2530	printf "\n *** skipping parameter file check."
2531	fi
2532	fi
2533
2534	elif [[ $skip_check == false ]]
2535	then
2536	# STARTING THE PARAMETER FILE CHECK
2537	printf "\n\n *** starting parameter file check..."
2538
2539	# CHECKING THE P3D FILE
2540	printf "\n\n (1) checking $filename_input"
2541	echo "$numprocs 0 0" > VARIN
2542	errors=`./check_namelist_files.x < VARIN 2>&1`
2543
2544	check_error=false
2545	if [[ "$errors" == "" ]]
2546	then
2547	printf " --> o.k."
2548	else
2549	printf " --> failed."
2550	check_error=true
2551	printf "\n\n $errors"
2552	fi
2553
2554	# CHECKING THE PD3F FILE IF NECESSARY
2555	if [[ $check_restart == 1 && $check_error == false ]]
2556	then
2557	printf "\n\n (2) checking $filenamef"
2558
2559	# FIRST CHECK IF INITIALIZING_ACTIONS="READ_RESTART_DATA" IS SET
2560	# IN &INIPAR LIST
2561	found=false
2562	cat PARINF \| while read line
2563	do
2564	line=$(echo $line\|sed 's/ //g')
2565	if [[ $line == "&inipar" ]]
2566	then
2567	start_search=true
2568	fi
2569
2570	if [[ $start_search == true ]]
2571	then
2572	if [[ $line == "initializing_actions='read_restart_data'" ]]
2573	then
2574	found=true
2575	break
2576	fi
2577	fi
2578
2579	if [[ $line == "/" ]]
2580	then
2581	start_search=false
2582	fi
2583
2584	done
2585
2586	if [[ $found = false ]]
2587	then
2588	printf "\n\n +++ ERROR: initializing_actions = 'read_restart_data' not found"
2589	printf "\n in &inipar list in $fname$p3df_suffix."
2590	rm -rf $check_sources
2591	locat=check_namelist; exit
2592	fi
2593
2594	# READ max_user_pr FROM FILES
2595	if [[ -f parin_for_check ]]
2596	then
2597	read max_pr_user < parin_for_check
2598	else
2599	max_user_pr=0
2600	fi
2601
2602	echo "$numprocs 1 $max_pr_user" > VARIN
2603	errors=`./check_namelist_files.x < VARIN 2>&1`
2604
2605	if [[ "$errors" == "" ]]
2606	then
2607	printf " --> o.k."
2608	else
2609	printf " --> failed."
2610	check_error=true
2611	printf "\n\n $errors"
2612	fi
2613	fi
2614
2615	# REPORT ERRORS AND CONTINUE/EXIT
2616	if [[ $check_error == true ]]
2617	then
2618	printf "\n +++ errors found in the parameter file!\n"
2619	answer=dummy
2620	printf "\n\n"
2621
2622	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2623	do
2624	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2625	read answer
2626	done
2627
2628	if [[ $answer = a \|\| $answer = A ]]
2629	then
2630	printf "\n +++ Aborting..."
2631	rm -rf $check_sources
2632	locat=normal; exit
2633	fi
2634	else
2635	printf "\n\n *** parameter file(s) seem(s) to be o.k.\n"
2636	fi
2637	rm -rf $check_sources
2638	fi
2639	else
2640	printf "\n\n +++ skipping parameter file check due to following reason: $reason \n"
2641	fi
2642
2643	# DELETE TEMPORARY DIRECTORY AND FINISH NAMELIST FILE CHECK
2644	rm -rf $check_sources
2645	cd $working_directory
2646
2647
2648	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2649	# CHENDE AKTIONEN DURCHGEFUEHRT
2650	if [[ $do_batch = false ]]
2651	then
2652
2653
2654	# TEMPORAEREN KATALOG ERZEUGEN
2655	mkdir -p $TEMPDIR
2656	chmod go+rx $TEMPDIR
2657	tmpcreate=true
2658
2659	# set striping on lustre file system
2660	# if [[ $localhost = lcsgih ]]
2661	# then
2662	# lfs setstripe -s 8192k -c 16 $TEMPDIR
2663	# lfs getstripe $TEMPDIR
2664	# fi
2665
2666
2667	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2668	# TEMPORAERES VERZEICHNIS KOPIEREN
2669	if [[ $do_compile = true ]]
2670	then
2671
2672	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2673	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2674	if [[ $localhost = nech ]]
2675	then
2676	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2677	if mkdir -p $TEMPDIR_COMPILE
2678	then
2679	printf "\n *** \"$TEMPDIR_COMPILE\" "
2680	printf "\n is generated as temporary directory for cross compiling\n"
2681	else
2682	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2683	printf "\n needed for cross compilation failed"
2684	locat=compile
2685	exit
2686	fi
2687	else
2688	TEMPDIR_COMPILE=$TEMPDIR
2689	fi
2690
2691
2692	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2693	line=""
2694	grep "%depository_path" $config_file > tmp_mrun
2695	while read line
2696	do
2697	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2698	then
2699	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2700	then
2701	global_depository_path=`echo $line \| cut -d" " -s -f2`
2702	fi
2703	fi
2704	done < tmp_mrun
2705
2706	line=""
2707	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2708	while read line
2709	do
2710	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2711	then
2712	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2713	then
2714	local_depository_path=`echo $line \| cut -d" " -s -f2`
2715	fi
2716	fi
2717	done < tmp_mrun
2718
2719	if [[ "$local_depository_path" = "" ]]
2720	then
2721	if [[ "$global_depository_path" != "" ]]
2722	then
2723	local_depository_path=$global_depository_path
2724	else
2725	printf "\n\n +++ no depository path found in configuration file"
2726	printf "\n for local host \"$localhost\" "
2727	printf "\n please set \"\%depository_path\" in configuration file\n"
2728	locat=config_file; exit
2729	fi
2730	fi
2731	eval local_depository_path=$local_depository_path
2732	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2733	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2734
2735
2736	basename=`echo $mainprog \| cut -f1 -d"."`
2737	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2738	if [[ ! -f $make_depository ]]
2739	then
2740	printf "\n"
2741	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2742	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2743	else
2744	cp $make_depository $TEMPDIR_COMPILE
2745	cd $TEMPDIR_COMPILE
2746	tar -xf $make_depository > /dev/null 2>&1
2747	cd - > /dev/null
2748	fi
2749
2750	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2751
2752	else
2753
2754	cp $executable ${TEMPDIR}/a.out
2755
2756	fi
2757
2758
2759	# WECHSEL IN TEMPORAEREN KATALOG
2760	cd $TEMPDIR
2761	printf "\n *** changed to temporary directory: $TEMPDIR"
2762
2763
2764	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2765	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2766	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2767	# ERMITTELN
2768	(( i = 0 ))
2769	while (( i < iout ))
2770	do
2771	(( i = i + 1 ))
2772	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2773	then
2774	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2775	else
2776	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2777	fi
2778	done
2779
2780
2781	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2782	if [[ $do_compile = true ]]
2783	then
2784
2785
2786	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2787	printf "\n\n\n *** compilation starts \n$striche\n"
2788	printf " *** compilation with make using following options:\n"
2789	printf " make depository: $make_depository"
2790	if [[ "$mopts" != "" ]]
2791	then
2792	printf " make options: $mopts\n"
2793	fi
2794	printf " compilername: $compiler_name\n"
2795	printf " compiler options: $fopts\n"
2796	printf " preprocessor directives: $cpp_options \n"
2797	printf " linker options: $lopts \n"
2798	if [[ "$modules" != "" ]]
2799	then
2800	printf " modules to be load: $modules \n"
2801	fi
2802	printf " source code files: $source_list \n"
2803
2804	if [[ $localhost = nech ]]
2805	then
2806	# init_cmds was ". /SX/opt/etc/initsx.sh;"
2807	ssh $SSH_PORTOPT 136.172.44.192 -l $usern "$init_cmds $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2808	cp $TEMPDIR_COMPILE/a.out .
2809	[[ $? != 0 ]] && compile_error=true
2810	rm -rf $TEMPDIR_COMPILE
2811	elif [[ $localhost = ibmh ]]
2812	then
2813	printf " compiler is called via ssh on \"plogin1\" \n"
2814	ssh $SSH_PORTOPT plogin1 -l $usern "$init_cmds export PATH=/sw/ibm/xlf/13.1.0.8/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2815	[[ ! -f a.out ]] && compile_error=true
2816	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2817	elif [[ $localhost = lcsgib ]]
2818	then
2819	printf " compiler is called via ssh on \"bicegate0\" \n"
2820	ssh $SSH_PORTOPT bicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2821	[[ ! -f a.out ]] && compile_error=true
2822	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2823	elif [[ $localhost = lcsgih ]]
2824	then
2825	printf " compiler is called via ssh on \"hicegate0\" \n"
2826	ssh $SSH_PORTOPT hicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2827	[[ ! -f a.out ]] && compile_error=true
2828	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2829	elif [[ $localhost = lcflow ]]
2830	then
2831	printf " compiler is called via ssh on \"flow\" \n"
2832	ssh $SSH_PORTOPT flow02.hpc.uni-oldenburg.de -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2833	[[ ! -f a.out ]] && compile_error=true
2834	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2835	else
2836	[[ "$init_cmds" != "" ]] && eval $init_cmds
2837	[[ "$module_calls" != "" ]] && eval $module_calls
2838	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2839
2840	fi
2841
2842	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2843	then
2844	printf "\n +++ error occured while compiling or linking"
2845	locat=compile
2846
2847	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
2848	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
2849	# then
2850	exit
2851	# else
2852	# locat=normal
2853	# fi
2854	else
2855	printf "$striche\n *** compilation finished \n"
2856	fi
2857	fi
2858
2859
2860	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2861	if [[ $local_compile = true ]]
2862	then
2863	cd $HOME
2864	rm -rf $TEMPDIR
2865	locat=local_compile; exit
2866	fi
2867
2868
2869	# BEREITSTELLEN DER INPUT-DATEIEN
2870	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2871	(( i = 0 ))
2872	while (( i < iin ))
2873	do
2874	(( i = i + 1 ))
2875	if (( i == 1 ))
2876	then
2877	printf "\n\n *** providing INPUT-files:\n$striche"
2878	fi
2879
2880
2881	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2882	if [[ "${transin[$i]}" = unavailable ]]
2883	then
2884	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2885	then
2886	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2887	printf "\n is not available!"
2888	else
2889	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2890	printf "\n is not available!"
2891	fi
2892	continue
2893	fi
2894
2895	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2896	files_for_pes=false; datentyp=file
2897	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2898	then
2899	files_for_pes=true; datentyp=directory
2900	actionin[$i]=""
2901	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2902	then
2903	actionin[$i]=""
2904	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2905	then
2906	files_for_pes=true; datentyp=directory
2907	actionin[$i]="ar"
2908	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2909	then
2910	actionin[$i]="ar"
2911	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2912	then
2913	files_for_pes=true; datentyp=directory
2914	actionin[$i]="fl"
2915	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2916	then
2917	actionin[$i]="fl"
2918	fi
2919
2920	if [[ $files_for_pes = true ]]
2921	then
2922	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
2923	else
2924	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
2925	fi
2926
2927	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
2928	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
2929	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
2930	# SERVER ZU HOLEN
2931	if [[ "${actionin[$i]}" = fl ]]
2932	then
2933	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
2934	if [[ $files_for_pes = false ]]
2935	then
2936	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
2937	then
2938	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
2939	got_tmp[$i]=true
2940	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2941	then
2942	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2943	printf "\n *** trying to use backup copy in \"$WORK\" "
2944	cp $WORK/${frelin[$i]} ${localin[$i]}
2945	else
2946	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2947	printf "\n or \"$tmp_data_catalog\" does not exist!"
2948	printf "\n *** trying to get copy from archive"
2949	actionin[$i]=ar
2950	fi
2951	else
2952	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
2953	then
2954	mkdir ${localin[$i]}
2955	cd $tmp_data_catalog/${frelin[$i]}
2956	for file in $(ls *)
2957	do
2958	ln $file $TEMPDIR/${localin[$i]}
2959	done
2960	cd $TEMPDIR
2961	got_tmp[$i]=true
2962	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2963	then
2964	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2965	printf "\n *** trying to use backup copy in \"$WORK\" "
2966	cp -r $WORK/${frelin[$i]} ${localin[$i]}
2967	else
2968	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2969	printf "\n or \"$tmp_data_catalog\" does not exist!"
2970	printf "\n *** trying to get copy from archive"
2971	actionin[$i]=ar
2972	fi
2973	fi
2974	fi
2975
2976
2977	# DATEI LIEGT AUF ARCHIV-SERVER
2978	if [[ "${actionin[$i]}" = ar ]]
2979	then
2980
2981	if [[ $files_for_pes = false ]]
2982	then
2983	printf "\n file will be restored from archive-system ($archive_system)!"
2984	else
2985	printf "\n directory will be restored from archive-system ($archive_system)!"
2986	fi
2987
2988	file_restored=false
2989
2990	if [[ $archive_system = asterix ]]
2991	then
2992	do_stagein=true
2993	(( stagein_anz = 0 ))
2994	while [[ $do_stagein = true ]]
2995	do
2996	if [[ $files_for_pes = false ]]
2997	then
2998	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
2999	else
3000	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
3001	fi
3002	cat STAGEIN_OUTPUT
3003	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
3004	then
3005	file_restored=true
3006	do_stagein=false
3007	else
3008	(( stagein_anz = stagein_anz + 1 ))
3009	if (( stagein_anz == 10 ))
3010	then
3011	printf "\n +++ stagein stoped after 10 tries"
3012	locat=stage
3013	exit
3014	fi
3015	printf "\n +++ restoring from archive failed, trying again:"
3016	sleep 900
3017	fi
3018	done
3019	elif [[ $archive_system = DMF ]]
3020	then
3021	if [[ $files_for_pes = false ]]
3022	then
3023	printf "\n +++ restoring of single files impossible with $archive_system !\n"
3024	locat=DMF
3025	exit
3026	else
3027	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
3028	cp -r $ARCHIVE/${frelin[$i]} $PWD
3029	file_restored=true
3030	fi
3031	elif [[ $archive_system = tivoli ]]
3032	then
3033	if [[ $files_for_pes = false ]]
3034	then
3035	if [[ $localhost = lcsgih ]]
3036	then
3037	ssh $SSH_PORTOPT $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3038	else
3039	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3040	fi
3041	else
3042	(( inode = 0 ))
3043	while (( inode < nodes ))
3044	do
3045	if [[ $localhost = lcsgih ]]
3046	then
3047	ssh $SSH_PORTOPT $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3048	else
3049	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3050	fi
3051	(( inode = inode + 1 ))
3052	done
3053	fi
3054	file_restored=true
3055	elif [[ $archive_system = ut ]]
3056	then
3057	if [[ $files_for_pes = false ]]
3058	then
3059	cp $UT/${frelin[$i]} .
3060	else
3061	(( inode = 0 ))
3062	while (( inode < nodes ))
3063	do
3064	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
3065	(( inode = inode + 1 ))
3066	done
3067	fi
3068	file_restored=true
3069	else
3070	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
3071	locat=rearchive
3072	exit
3073	fi
3074
3075	if [[ $file_restored = true ]]
3076	then
3077
3078	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
3079	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
3080	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
3081	if [[ $files_for_pes = false ]]
3082	then
3083	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
3084	else
3085	mkdir $tmp_data_catalog/${frelin[$i]}
3086	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
3087	fi
3088	got_tmp[$i]=true
3089
3090	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
3091	mv ${frelin[$i]} ${localin[$i]}
3092
3093	fi
3094	fi
3095
3096
3097	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
3098	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
3099	then
3100
3101	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
3102	then
3103
3104	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
3105	printf "\n file will be provided for $numprocs processors"
3106	mkdir ${localin[$i]}
3107	ival=$numprocs
3108	(( ii = 0 ))
3109	while (( ii <= ival-1 ))
3110	do
3111	if (( ii < 10 ))
3112	then
3113	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
3114	elif (( ii < 100 ))
3115	then
3116	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
3117	elif (( ii < 1000 ))
3118	then
3119	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
3120	else
3121	cp ${absnamein[$i]} ${localin[$i]}/_$ii
3122	fi
3123	(( ii = ii + 1 ))
3124	done
3125
3126	else
3127
3128	if [[ $files_for_pes = true ]]
3129	then
3130
3131	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
3132	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
3133	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
3134	# PER MOVE UMBENANNT WERDEN
3135	printf "\n providing $numprocs files for the respective processors"
3136	mkdir ${localin[$i]}
3137	if [[ $link_local_input = true ]]
3138	then
3139	printf " using ln -f\n"
3140	cd ${absnamein[$i]}
3141	for file in $(ls *)
3142	do
3143	ln -f $file ${localin[$i]}
3144	done
3145	cd $TEMPDIR
3146	fi
3147	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
3148	if [[ ! -f "${localin[$i]}/_0000" ]]
3149	then
3150	if [[ $link_local_input = true ]]
3151	then
3152	printf " ln failed for .../_0000, using cp...\n"
3153	fi
3154	cp -r ${absnamein[$i]}/* ${localin[$i]}
3155	fi
3156
3157	else
3158	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
3159	if [[ $link_local_input = true ]]
3160	then
3161	printf " using ln -f\n"
3162	ln -f ${absnamein[$i]} ${localin[$i]}
3163	fi
3164	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
3165	if [[ ! -f "${localin[$i]}" ]]
3166	then
3167	if [[ $link_local_input = true ]]
3168	then
3169	printf " ln failed, using cp...\n"
3170	fi
3171	cp ${absnamein[$i]} ${localin[$i]}
3172	fi
3173	fi
3174	fi
3175	fi
3176
3177	done
3178	if (( i != 0 ))
3179	then
3180	printf "\n$striche\n *** all INPUT-files provided \n"
3181	fi
3182
3183
3184	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
3185	(( i = 0 ))
3186	while (( i < iic ))
3187	do
3188	(( i = i + 1 ))
3189	if (( i == 1 ))
3190	then
3191	printf "\n\n *** execution of INPUT-commands:\n$striche"
3192	fi
3193	printf "\n >>> ${in_command[$i]}"
3194	eval ${in_command[$i]}
3195	if (( i == iic ))
3196	then
3197	printf "\n$striche\n"
3198	fi
3199	done
3200
3201
3202	# VERBLEIBENDE CPU-ZEIT BERECHNEN
3203	cpurest=${cpumax}.
3204
3205
3206	# START DVR STREAMING SERVER
3207	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3208	then
3209	if [[ "$dvr_server" != "" ]]
3210	then
3211
3212	printf "\n\n *** preparing the dvr streaming server configuration file"
3213
3214	# Check, if a dvr server is already running
3215	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
3216	if [[ "$running_dvrserver_id" != "" ]]
3217	then
3218
3219	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
3220	printf "\n This server is used instead starting a new one!"
3221	printf "\n If required, script \"process_dvr_output\" has to be run manually."
3222
3223	else
3224
3225	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
3226	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
3227	then
3228	cp ${PALM_BIN}/.dvrserver.config .
3229
3230	# Entering the BASEDIR, UID and GID into this file
3231	user_id=`id -u`
3232	group_id=`id -g`
3233	# & is needed as seperator, because TEMPDIR contains /
3234	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
3235	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
3236	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
3237	mv .dvrserver.3 .dvrserver.config
3238	rm .dvrserver.1 .dvrserver.2
3239
3240	# Start dvr server in background, get his id and print on terminal
3241	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
3242	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
3243	printf "\n *** streaming server with id=$dvrserver_id is started in background"
3244	local_dvrserver_running=.TRUE.
3245	else
3246	printf "\n +++ missing file \".dvrserver.config\" in directory:"
3247	printf "\n \"$PALM_BIN\" "
3248	locat=dvr
3249	exit
3250	fi
3251
3252	fi
3253
3254	else
3255	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
3256	fi
3257	fi
3258
3259
3260	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
3261	# LESEN VON PALM)
3262	cat > ENVPAR << %%END%%
3263	&envpar run_identifier = '$fname', host = '$localhost',
3264	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
3265	maximum_parallel_io_streams = $maximum_parallel_io_streams,
3266	maximum_cpu_time_allowed = ${cpumax}.,
3267	revision = '$global_revision',
3268	local_dvrserver_running = $local_dvrserver_running /
3269
3270	%%END%%
3271
3272
3273	# PROGRAMMSTART
3274	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
3275	PATH=$PATH:$TEMPDIR
3276
3277	# MPI debug option (argument checking, slows down execution due to increased latency)
3278	if [[ "$mpi_debug" = true ]]
3279	then
3280	export MPI_CHECK_ARGS=1
3281	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
3282	fi
3283
3284	if [[ "$totalview" = true ]]
3285	then
3286	printf "\n *** totalview debugger will be used"
3287	tv_opt="-tv"
3288	else
3289	tv_opt=""
3290	fi
3291
3292	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
3293	then
3294	if [[ "$ENVIRONMENT" = BATCH ]]
3295	then
3296	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
3297	then
3298	printf "\n +++ debug is allowed in interactive mode only"
3299	locat=debug
3300	exit
3301	fi
3302	fi
3303	if [[ $localhost = ibmh ]]
3304	then
3305
3306	# SETUP THE IBM MPI ENVIRONMENT
3307	export MP_SHARED_MEMORY=yes
3308	export AIXTHREADS_SCOPE=S
3309	export OMP_NUM_THREADS=$threads_per_task
3310	export AUTHSTATE=files
3311	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3312
3313	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
3314	export MP_ADAPTER_USE=shared
3315	export MP_CPU_USE=multiple
3316	export MP_TIMEOUT=1200
3317
3318	unset MP_TASK_AFFINITY
3319
3320	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
3321	#(( ii = 1 ))
3322	#while (( ii <= $numprocs ))
3323	#do
3324	# echo $localhost_realname >> hostfile
3325	# (( ii = ii + 1 ))
3326	#done
3327	#export MP_HOSTFILE=hostfile
3328
3329	if [[ "$LOADLBATCH" = yes ]]
3330	then
3331	totalview poe a.out $ROPTS
3332	else
3333	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3334	export TVDSVRLAUNCHCMD=ssh
3335	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3336	fi
3337	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
3338	then
3339	# CURRENTLY NO DEBUGGER ON LCSGI
3340	if [[ $run_coupled_model = true ]]
3341	then
3342	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
3343	locat=debug
3344	exit
3345	else
3346	echo "no_coupling" > runfile_atmos
3347	fi
3348	(( ii = $numprocs / $threads_per_task ))
3349	export OMP_NUM_THREADS=$threads_per_task
3350	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3351	if [[ $threads_per_task != 1 ]]
3352	then
3353	printf "\n threads per task: $threads_per_task"
3354	fi
3355	printf "\n\n"
3356	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3357	then
3358	# export MPI_LAUNCH_TIMEOUT=360
3359	if [[ "$totalview" = true ]]
3360	then
3361	printf "\n running totalview debugger"
3362	mpiexec_mpt $tv_opt -n $ii ./a.out $ROPTS < runfile_atmos
3363	else
3364	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3365	fi
3366	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3367	then
3368	# ulimit -s 300000 # A too large stack size causes problems
3369	# export MV2_NUM_PORTS=2
3370	# export MV2_CPU_MAPPING=0:1:2:3
3371	if [[ "$totalview" = true ]]
3372	then
3373	printf "\n running totalview debugger"
3374	mpiexec $tv_opt ./a.out $ROPTS < runfile_atmos
3375	else
3376	mpiexec ./a.out $ROPTS < runfile_atmos
3377	fi
3378	fi
3379	else
3380	printf "\n +++ no debug available on \"$localhost\" "
3381	printf "\n or not implemented in mrun so far"
3382	locat=debug
3383	exit
3384	fi
3385
3386	# end debug mode
3387	else
3388
3389	# normal execution
3390	if [[ -n $numprocs ]]
3391	then
3392	# RUNNING THE PROGRAM ON PARALLEL MACHINES
3393	if [[ $(echo $host \| cut -c1-3) = ibm ]]
3394	then
3395	# SETUP THE IBM MPI ENVIRONMENT
3396	if [[ $host != ibmh && $host != ibmkisti ]]
3397	then
3398	export MP_SHARED_MEMORY=yes
3399	export AIXTHREAD_SCOPE=S
3400	export OMP_NUM_THREADS=$threads_per_task
3401	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
3402	export AUTHSTATE=files
3403	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3404	# export MP_PRINTENV=yes
3405
3406	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3407	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3408	export MP_WAIT_MODE=poll
3409	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3410	fi
3411
3412	if [[ $host = ibmkisti ]]
3413	then
3414	export LANG=en_US
3415	export MP_SHARED_MEMORY=yes
3416	if [[ $threads_per_task = 1 ]]
3417	then
3418	export MP_SINGLE_THREAD=yes
3419	export MEMORY_AFFINITY=MCM
3420	else
3421	export OMP_NUM_THREADS=$threads_per_task
3422	fi
3423	fi
3424
3425	if [[ "$LOADLBATCH" = yes ]]
3426	then
3427	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3428	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3429	then
3430	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3431	else
3432	if [[ $run_coupled_model = false ]]
3433	then
3434	if [[ "$ocean_file_appendix" = true ]]
3435	then
3436	echo "precursor_ocean" > runfile_atmos
3437	else
3438	echo "precursor_atmos" > runfile_atmos
3439	fi
3440	else
3441	(( iia = $numprocs_atmos / $threads_per_task ))
3442	(( iio = $numprocs_ocean / $threads_per_task ))
3443	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3444	printf "\n using $coupled_mode coupling"
3445	printf "\n\n"
3446	echo "coupled_run $iia $iio" > runfile_atmos
3447	fi
3448	poe ./a.out $ROPTS < runfile_atmos
3449	fi
3450	else
3451	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
3452	then
3453	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3454	elif [[ $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibmy ]]
3455	then
3456	if [[ -f $hostfile ]]
3457	then
3458	cp $hostfile hostfile
3459	else
3460	(( ii = 1 ))
3461	while (( ii <= $numprocs ))
3462	do
3463	echo $localhost_realname >> hostfile
3464	(( ii = ii + 1 ))
3465	done
3466	fi
3467	export MP_HOSTFILE=hostfile
3468	if [[ $run_coupled_model = false ]]
3469	then
3470	if [[ "$ocean_file_appendix" = true ]]
3471	then
3472	echo "precursor_ocean" > runfile_atmos
3473	else
3474	echo "precursor_atmos" > runfile_atmos
3475	fi
3476	else
3477	(( iia = $numprocs_atmos / $threads_per_task ))
3478	(( iio = $numprocs_ocean / $threads_per_task ))
3479	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3480	printf "\n using $coupled_mode coupling"
3481	printf "\n\n"
3482	echo "coupled_run $iia $iio" > runfile_atmos
3483	fi
3484	if [[ $localhost = ibmy ]]
3485	then
3486	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3487	else
3488	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
3489	fi
3490
3491	else
3492	if [[ "$host_file" = "" ]]
3493	then
3494	printf "\n +++ no hostfile given in configuration file"
3495	locat=config_file
3496	exit
3497	else
3498	eval host_file=$host_file
3499	fi
3500	export MP_HOSTFILE=$host_file
3501	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3502	fi
3503	fi
3504	elif [[ $host = nech \|\| $host = necriam ]]
3505	then
3506	(( ii = nodes ))
3507	if [[ $ii = 1 ]]
3508	then
3509	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3510	export MPIPROGINF=YES
3511	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3512	echo "*** execution on single node with mpirun"
3513	mpirun -np $numprocs ./a.out $ROPTS
3514	else
3515	(( i = 0 ))
3516	while (( i < ii ))
3517	do
3518	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3519	(( i = i + 1 ))
3520	done
3521
3522	echo "#!/bin/sh" > mpi_exec_shell
3523	echo " " >> mpi_exec_shell
3524	echo "set -u" >> mpi_exec_shell
3525	echo "F_ERRCNT=0" >> mpi_exec_shell
3526	echo "MPIPROGINV=YES" >> mpi_exec_shell
3527	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3528	echo "cpurest=$cpurest" >> mpi_exec_shell
3529	echo "fname=$fname" >> mpi_exec_shell
3530	echo "localhost=$localhost" >> mpi_exec_shell
3531	echo "return_addres=$return_addres" >> mpi_exec_shell
3532	echo "return_username=$return_username" >> mpi_exec_shell
3533	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3534	echo "write_binary=$write_binary" >> mpi_exec_shell
3535	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3536	echo " " >> mpi_exec_shell
3537	echo "export F_ERRCNT" >> mpi_exec_shell
3538	echo "export MPIPROGINV" >> mpi_exec_shell
3539	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3540	echo "export cpurest" >> mpi_exec_shell
3541	echo "export fname" >> mpi_exec_shell
3542	echo "export localhost" >> mpi_exec_shell
3543	echo "export return_addres" >> mpi_exec_shell
3544	echo "export return_username" >> mpi_exec_shell
3545	echo "export tasks_per_node" >> mpi_exec_shell
3546	echo "export write_binary" >> mpi_exec_shell
3547	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3548	echo " " >> mpi_exec_shell
3549	echo "exec ./a.out" >> mpi_exec_shell
3550
3551	chmod u+x mpi_exec_shell
3552	export MPIPROGINF=YES
3553	mpirun -f multinode_config &
3554	wait
3555
3556	fi
3557	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
3558	then
3559
3560	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3561	# DOES NOT EXIST
3562	if [[ $host != lcsgih && $host != lcsgib && $host != lckyuh && $host != lckyut ]]
3563	then
3564	if [[ -f $hostfile ]]
3565	then
3566	cp $hostfile hostfile
3567	(( ii = $numprocs / $threads_per_task ))
3568	else
3569	(( ii = 1 ))
3570	while (( ii <= $numprocs / $threads_per_task ))
3571	do
3572	echo $localhost_realname >> hostfile
3573	(( ii = ii + 1 ))
3574	done
3575	fi
3576	eval zeile=\"`head -n $ii hostfile`\"
3577	printf "\n *** running on: $zeile"
3578	fi
3579
3580	(( ii = $numprocs / $threads_per_task ))
3581	export OMP_NUM_THREADS=$threads_per_task
3582	# echo "*** OMP_NUM_THREADS=$OMP_NUM_THREADS"
3583	if [[ $threads_per_task != 1 ]]
3584	then
3585	# increase stack size to unlimited, because large runs
3586	# may abort otherwise
3587	ulimit -Ss unlimited
3588	printf "\n threads per task: $threads_per_task stacksize: unlimited"
3589	fi
3590	if [[ $run_coupled_model = false ]]
3591	then
3592	if [[ "$ocean_file_appendix" = true ]]
3593	then
3594	echo "precursor_ocean" > runfile_atmos
3595	else
3596	echo "precursor_atmos" > runfile_atmos
3597	fi
3598	printf "\n\n"
3599	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3600	then
3601	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3602	then
3603	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3604	# export MPI_DSM_DISTRIBUTE=1
3605	# MPI_DSM_CPULIST: pin MPI processes to cores
3606	if [[ $use_openmp = false ]]
3607	then
3608	if [[ "$sgi_feature" = ice2 ]]
3609	then
3610	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
3611	else
3612	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3613	fi
3614	else
3615	unset MPI_DSM_CPULIST
3616	fi
3617	# MPI_IB_RAILS: use both IB rails on ICE2
3618	export MPI_BUFS_PER_HOST=512
3619	export MPI_IB_RAILS=2
3620	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3621	export MPI_CONNECTIONS_THRESHOLD=8192
3622	# echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
3623	export MPI_TYPE_DEPTH=20
3624	# echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
3625	export MPI_GROUP_MAX=64
3626	# echo "*** MPI_GROUP_MAX=$MPI_GROUP_MAX"
3627	if [[ $use_openmp = true ]]
3628	then
3629	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3630	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3631	else
3632	mpiexec_mpt -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3633	fi
3634
3635	# next is test for openmp usage
3636	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3637	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
3638	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3639	then
3640	export MV2_NUM_PORTS=2
3641	# The default setting of MV2_CPU_MAPPING gives best results
3642	# export MV2_ENABLE_AFFINITY=1
3643	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3644	# if [[ "$sgi_feature" = ice2 ]]
3645	# then
3646	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
3647	# else
3648	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3649	# fi
3650	if [[ $use_openmp = true ]]
3651	then
3652	unset MV2_CPU_MAPPING
3653	export MV2_ENABLE_AFFINITY=0
3654	fi
3655	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
3656	echo "*** MV2_ENABLE_AFFINITY=$MV2_ENABLE_AFFINITY"
3657	if [[ $use_openmp = true ]]
3658	then
3659	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3660	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3661	else
3662	mpiexec -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3663	fi
3664	elif [[ "$mpilib" = impi ]]
3665	then
3666	echo "mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos"
3667	mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos
3668	fi
3669	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3670	then
3671	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3672	elif [[ $host = lcflow ]]
3673	then
3674	mpiexec -machinefile $TMPDIR/machines -n $ii -env I_MPI_FABRICS shm:ofa a.out < runfile_atmos $ROPTS
3675	elif [[ $host = lcsb ]]
3676	then
3677	mpirun_rsh -hostfile $PBS_NODEFILE -np `cat $PBS_NODEFILE \| wc -l` a.out < runfile_atmos $ROPTS
3678	elif [[ $host = lckiaps ]]
3679	then
3680	mpirun -np $ii -f $PBS_NODEFILE a.out < runfile_atmos $ROPTS
3681	elif [[ $host = lckyu* ]]
3682	then
3683	mpiexec -n $ii --stdin runfile_atmos ./a.out $ROPTS
3684	else
3685	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3686	fi
3687	else
3688
3689	# currently there is no full MPI-2 support on ICE and XT4
3690	(( iia = $numprocs_atmos / $threads_per_task ))
3691	(( iio = $numprocs_ocean / $threads_per_task ))
3692	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3693	printf "\n using $coupled_mode coupling"
3694	printf "\n\n"
3695
3696	if [[ $coupled_mode = "mpi2" ]]
3697	then
3698	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3699	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3700	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3701	then
3702
3703	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3704	then
3705	# export MPI_LAUNCH_TIMEOUT=360
3706	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3707	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3708	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3709	then
3710	# ulimit -s 300000 # A too large stack size causes problems
3711	# export MV2_NUM_PORTS=2
3712	# export MV2_CPU_MAPPING=0:1:2:3
3713	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3714	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3715	fi
3716
3717	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3718	then
3719
3720	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3721	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3722
3723	else
3724	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3725	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3726	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3727	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3728	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3729	fi
3730	wait
3731
3732	else
3733
3734	echo "coupled_run $iia $iio" > runfile_atmos
3735	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3736	then
3737
3738	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3739	then
3740	# export MPI_LAUNCH_TIMEOUT=360
3741	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3742	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3743	then
3744	# ulimit -s 300000 # A too large stack size causes problems
3745	# export MV2_NUM_PORTS=2
3746	# export MV2_CPU_MAPPING=0:1:2:3
3747	mpiexec ./a.out $ROPTS < runfile_atmos
3748	fi
3749
3750	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3751	then
3752
3753	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3754
3755	elif [[ $host = lck \|\| $host = lckordi ]]
3756	then
3757
3758	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3759
3760	elif [[ $host = lckyu* ]]
3761	then
3762
3763	mpiexec -n $ii --stdin runfile_atmos ./a.out $ROPTS
3764
3765	fi
3766	wait
3767	fi
3768
3769	fi
3770	elif [[ $host = lckyoto ]]
3771	then
3772	set -xv
3773	export P4_RSHCOMMAND=plesh
3774	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
3775	if [[ "$ENVIRONMENT" = BATCH ]]
3776	then
3777	if [[ "$cond2" = fujitsu ]]
3778	then
3779	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
3780	elif [[ "cond2" = pgi ]]
3781	then
3782	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
3783	else
3784	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
3785	fi
3786	else
3787	if [[ "$cond2" = "" ]]
3788	then
3789	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
3790	else
3791	mpirun -np $numprocs ./a.out $ROPTS
3792	fi
3793	fi
3794	set +xv
3795	elif [[ $host = lctit ]]
3796	then
3797	export OMP_NUM_THREADS=$threads_per_task
3798	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3799	if [[ "$threads_per_task" != 1 ]]
3800	then
3801	export MV2_ENABLE_AFFINITY=0
3802	fi
3803	echo "----- PBS_NODEFILE content:"
3804	cat $PBS_NODEFILE
3805	echo "-----"
3806	(( ii = $numprocs / $threads_per_task ))
3807	echo "mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS"
3808	mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS
3809	else
3810	mpprun -n $numprocs a.out $ROPTS
3811	fi
3812	[[ $? != 0 ]] && execution_error=true
3813
3814
3815	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3816	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3817	then
3818	apprentice
3819	fi
3820	else
3821	a.out $ROPTS
3822	fi
3823	fi
3824	if [[ $? != 0 \|\| $execution_error = true ]]
3825	then
3826
3827	# ABBRUCH BEI LAUFZEITFEHLER
3828	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3829	printf "\n +++ runtime error occured"
3830	locat=execution
3831	exit
3832	else
3833	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3834	printf "\n$striche\n *** execution finished \n"
3835
3836	# Stop the dvr streaming server and process the dvr output in order
3837	# to create dvrs- and html-files containing all streams
3838	if [[ "$dvrserver_id" != "" ]]
3839	then
3840	kill $dvrserver_id
3841	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3842
3843	# If there is a directory, data have been output by the
3844	# streaming server. Otherwise, user has chosen dvrp_output=local
3845	if [[ -d DATA_DVR ]]
3846	then
3847
3848	# Add the current dvr configuration file to the dvr output
3849	# directory
3850	cp .dvrserver.config DATA_DVR
3851
3852	# Process the dvr output (option -s for also generating
3853	# sequence mode data)
3854	process_dvr_output -d DATA_DVR -f $fname -s
3855
3856	else
3857
3858	# Process the local output
3859	process_dvr_output -l -d DATA_DVR -f $fname
3860
3861	fi
3862
3863	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3864	then
3865
3866	# Process dvr output generated in local mode (dvrp_output=local)
3867	process_dvr_output -l -d DATA_DVR -f $fname
3868
3869	fi
3870	fi
3871
3872
3873
3874	# Call of combine_plot_fields in order to merge single files written
3875	# by each PE into one file.
3876	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
3877	then
3878	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
3879	printf "\n 2d- and/or 3d-data may be incomplete!"
3880	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
3881	elif [[ "$combine_plot_fields" == true ]]
3882	then
3883	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
3884	combine_plot_fields${block}.x
3885	else
3886	# Temporary solution to skip combine_plot_fields. This is necessary in case of huge amount of
3887	# data output. To do: extend this branch by creating a batch job for combine_plot_fields.
3888	printf "\n\n\n *** post-processing: skipping combine_plot_fields (-Z option set) ..."
3889	fi
3890
3891
3892
3893	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3894	(( i = 0 ))
3895	while (( i < ioc ))
3896	do
3897	(( i = i + 1 ))
3898	if (( i == 1 ))
3899	then
3900	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
3901	fi
3902	printf "\n >>> ${out_command[$i]}"
3903	eval ${out_command[$i]}
3904	if (( i == ioc ))
3905	then
3906	printf "\n$striche\n"
3907	fi
3908	done
3909
3910
3911	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
3912	if [[ $do_trace = true ]]
3913	then
3914	printf "\n\n"
3915	ls -al
3916	fi
3917
3918
3919
3920	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
3921	(( i = 0 ))
3922	while (( i < iout ))
3923	do
3924	(( i = i + 1 ))
3925	if (( i == 1 ))
3926	then
3927	printf "\n\n *** saving OUTPUT-files:\n$striche"
3928	fi
3929
3930	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3931	files_for_pes=false; filetyp=file
3932	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
3933	then
3934	files_for_pes=true; filetyp=directory
3935	actionout[$i]=""
3936	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
3937	then
3938	actionout[$i]=""
3939	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
3940	then
3941	files_for_pes=true; filetyp=directory
3942	actionout[$i]="ar"
3943	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
3944	then
3945	actionout[$i]="ar"
3946	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
3947	then
3948	files_for_pes=true; filetyp=directory
3949	actionout[$i]="fl"
3950	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
3951	then
3952	actionout[$i]="fl"
3953	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
3954	then
3955	files_for_pes=true; filetyp=directory
3956	actionout[$i]="tr"
3957	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
3958	then
3959	actionout[$i]="tr"
3960	fi
3961
3962	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
3963	then
3964	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
3965	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
3966	then
3967	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
3968	else
3969
3970
3971	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3972	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3973	# REMOTE-RECHNUNGEN
3974	if [[ "${actionout[$i]}" = tr ]]
3975	then
3976	if [[ $localhost != $fromhost ]]
3977	then
3978	if [[ $files_for_pes = false ]]
3979	then
3980	cps=""
3981	cst=""
3982	else
3983	cps=-c
3984	cst="/"
3985	fi
3986	if [[ $localhost = nech ]]
3987	then
3988
3989	# TRANSFER IN EIGENSTAENDIGEM JOB
3990	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3991	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3992	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3993	if [[ $files_for_pes = false ]]
3994	then
3995	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3996	else
3997	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
3998	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
3999	fi
4000
4001	echo "set -x" > transfer_${localout[$i]}
4002	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4003
4004	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
4005	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
4006	printf "\n or higher cycle\n"
4007	echo "batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4008
4009	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4010
4011	if [[ $localhost = nech ]]
4012	then
4013	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
4014	else
4015	if [[ "$LOGNAME" = b323013 ]]
4016	then
4017	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4018	else
4019	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4020	fi
4021	fi
4022
4023	else
4024
4025	# TRANSFER INNERHALB DIESES JOBS
4026	transfer_failed=false
4027	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
4028	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
4029	batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4030	[[ $? != 0 ]] && transfer_failed=true
4031
4032	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4033	# LOKALER MASCHINE ANLEGEN
4034	if [[ $transfer_failed = true ]]
4035	then
4036	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4037	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4038
4039	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4040	# ANLEGEN.
4041	eval local_catalog=${pathout[$i]}
4042	if [[ ! -d $local_catalog ]]
4043	then
4044	printf " *** local directory does not exist. Trying to create:\n"
4045	printf " $local_catalog \n"
4046	mkdir -p $local_catalog
4047	fi
4048	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4049	transfer_problems=true
4050	fi
4051	fi
4052	else
4053
4054	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
4055	actionout[$i]=""
4056	fi
4057	fi
4058
4059
4060	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
4061	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
4062	# REMOTE-RECHNUNGEN
4063	if [[ "${actionout[$i]}" = tra ]]
4064	then
4065	if [[ $localhost != $fromhost ]]
4066	then
4067	if [[ $localhost = ibmh \|\| $localhost = nech ]]
4068	then
4069
4070	# TRANSFER IN EIGENSTAENDIGEM JOB
4071	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4072	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4073	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4074	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4075
4076	echo "set -x" > transfer_${localout[$i]}
4077	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4078
4079	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
4080	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
4081	printf "\n or higher cycle\n"
4082	echo "batch_scp $PORTOPT -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4083
4084	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4085
4086	if [[ $localhost = nech ]]
4087	then
4088	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
4089	else
4090	if [[ $LOGNAME = b323013 ]]
4091	then
4092	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4093	else
4094	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4095	fi
4096	fi
4097
4098	else
4099
4100	# TRANSFER INNERHALB DIESES JOBS
4101	transfer_failed=false
4102	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
4103	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
4104	batch_scp $PORTOPT -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4105	[[ $? != 0 ]] && transfer_failed=true
4106
4107	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4108	# LOKALER MASCHINE ANLEGEN
4109	if [[ $transfer_failed = true ]]
4110	then
4111	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4112	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4113
4114	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4115	# ANLEGEN
4116	eval local_catalog=${pathout[$i]}
4117	if [[ ! -d $local_catalog ]]
4118	then
4119	printf " *** local directory does not exist. Trying to create:\n"
4120	printf " $local_catalog \n"
4121	mkdir -p $local_catalog
4122	fi
4123
4124	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4125	transfer_problems=true
4126	fi
4127	fi
4128	else
4129
4130	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
4131	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
4132	actionout[$i]=a
4133	fi
4134	fi
4135
4136
4137	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
4138	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
4139	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
4140	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
4141	if [[ "${actionout[$i]}" = fl ]]
4142	then
4143	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4144	chmod g+rx $tmp_data_catalog
4145	if [[ $files_for_pes = false ]]
4146	then
4147	printf "\n >>> OUTPUT: ${localout[$i]} to"
4148	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4149	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
4150	else
4151	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
4152	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4153	mkdir $tmp_data_catalog/${frelout[$i]}
4154	cd ${localout[$i]}
4155	for file in $(ls *)
4156	do
4157	ln -f $file $tmp_data_catalog/${frelout[$i]}
4158	done
4159	cd $TEMPDIR
4160	fi
4161
4162
4163	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
4164	if [[ $store_on_archive_system = true ]]
4165	then
4166
4167	if [[ $archive_system = asterix ]]
4168	then
4169	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4170	if [[ $files_for_pes = false ]]
4171	then
4172	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4173	else
4174	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4175	fi
4176	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4177	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
4178	echo "then" >> archive_${frelout[$i]}
4179	echo " do_stageout=false" >> archive_${frelout[$i]}
4180	echo "else" >> archive_${frelout[$i]}
4181	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
4182	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
4183	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
4184	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
4185	if [[ $files_for_pes = false ]]
4186	then
4187	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
4188	else
4189	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
4190	fi
4191	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
4192	echo "fi" >> archive_${frelout[$i]}
4193	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4194	elif [[ $archive_system = DMF ]]
4195	then
4196	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4197	if [[ $files_for_pes = false ]]
4198	then
4199	printf "\n +++ archiving of single files impossible with $archive_system !\n"
4200	locat=DMF
4201	exit
4202	else
4203	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
4204	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
4205	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
4206	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
4207	fi
4208	elif [[ $archive_system = tivoli ]]
4209	then
4210	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4211	if [[ $files_for_pes = false ]]
4212	then
4213	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4214	echo "set -x" >> archive_${frelout[$i]}
4215	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4216	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4217	else
4218
4219	echo "set -x" >> archive_${frelout[$i]}
4220	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
4221	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4222	cd $tmp_data_catalog
4223	all_files=`ls -1 ${frelout[$i]}/*`
4224	cd - > /dev/null
4225	(( inode = 0 ))
4226	(( tp1 = tasks_per_node + 1 ))
4227	while (( inode < nodes ))
4228	do
4229	# echo "*** all_files = \"$all_files\" "
4230	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4231	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4232	# echo "*** tasks_per_node = \"$tasks_per_node\" "
4233	# echo "*** files = \"$files\" "
4234	# echo "*** all_files = \"$all_files\" "
4235	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4236	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4237	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
4238	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4239	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4240	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4241	(( inode = inode + 1 ))
4242	done
4243	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4244	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4245	fi
4246	elif [[ $archive_system = ut ]]
4247	then
4248	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4249	if [[ $files_for_pes = false ]]
4250	then
4251	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4252	echo "set -x" >> archive_${frelout[$i]}
4253	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4254	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4255	else
4256
4257	echo "set -x" >> archive_${frelout[$i]}
4258	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
4259	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
4260	cd $tmp_data_catalog
4261	all_files=`ls -1 ${frelout[$i]}/*`
4262	cd - > /dev/null
4263	(( inode = 0 ))
4264	(( tp1 = tasks_per_node + 1 ))
4265	while (( inode < nodes ))
4266	do
4267	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4268	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4269	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4270	(( inode = inode + 1 ))
4271	done
4272	fi
4273	elif [[ $archive_system = none ]]
4274	then
4275	printf " +++ archiving on $localhost not available!\n"
4276	fi
4277
4278	if [[ $archive_system != none ]]
4279	then
4280	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
4281	then
4282	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4283	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4284	elif [[ $localhost = nech ]]
4285	then
4286	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
4287	fi
4288	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4289	fi
4290	else
4291	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
4292	fi
4293
4294
4295	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
4296	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4297	if [[ $files_for_pes = false ]]
4298	then
4299	cat /dev/null > ${pathout[$i]}
4300	else
4301	mkdir -p ${pathout[$i]}
4302	fi
4303
4304	fi
4305
4306
4307	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
4308	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
4309	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4310	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
4311	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
4312	# GEMAESSEN ARCHIVIERUNGEN GESETZT
4313	if [[ "${actionout[$i]}" = ar ]]
4314	then
4315	if [[ $files_for_pes = false ]]
4316	then
4317	printf "\n >>> OUTPUT: ${localout[$i]} to"
4318	printf "\n ${pathout[$i]}"
4319	printf "\n File will be copied to archive-system ($archive_system) !\n"
4320	else
4321	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
4322	printf "\n ${pathout[$i]}"
4323	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
4324	fi
4325	mv ${localout[$i]} ${frelout[$i]}
4326
4327	file_saved=false
4328
4329	if [[ $archive_system = asterix ]]
4330	then
4331	do_stageout=true
4332	(( stageout_anz = 0 ))
4333	while [[ $do_stageout = true ]]
4334	do
4335	if [[ $files_for_pes = false ]]
4336	then
4337	stageout ${frelout[$i]} > STAGE_OUTPUT
4338	else
4339	stageout -t ${frelout[$i]} > STAGE_OUTPUT
4340	fi
4341	cat STAGE_OUTPUT
4342	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
4343	then
4344	file_saved=true
4345	do_stageout=false
4346	else
4347	if [[ $files_for_pes = false ]]
4348	then
4349	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
4350	else
4351	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
4352	fi
4353	(( stageout_anz = stageout_anz + 1 ))
4354	if (( stageout_anz == 10 ))
4355	then
4356	printf "\n +++ stoped after 10 unsuccessful tries!"
4357	archive_save=false
4358	do_stageout=false
4359	else
4360	printf "\n *** new try to store on archive after 15 min:"
4361	sleep 900
4362	fi
4363	fi
4364	done
4365	elif [[ $archive_system = DMF ]]
4366	then
4367	if [[ $files_for_pes = false ]]
4368	then
4369	printf "\n +++ archiving of single files impossible on $archive_system!\n"
4370	locat=DMF
4371	exit
4372	else
4373	rm -rf $ARCHIVE/${frelout[$i]}
4374	cp -r ${frelout[$i]} $ARCHIVE
4375	fi
4376	file_saved=true
4377	elif [[ $archive_system = tivoli ]]
4378	then
4379	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4380	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4381	# GELEGT WERDEN
4382	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4383	chmod g+rx $tmp_data_catalog
4384	if [[ $files_for_pes = false ]]
4385	then
4386	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4387	else
4388	mkdir $tmp_data_catalog/${frelout[$i]}
4389	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4390	fi
4391
4392	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4393	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4394	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4395	if [[ $files_for_pes = false ]]
4396	then
4397	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4398	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4399	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4400	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4401	else
4402	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4403	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4404	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4405	fi
4406
4407	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4408	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4409	file_saved=true
4410
4411	elif [[ $archive_system = ut ]]
4412	then
4413	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4414	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4415	# GELEGT WERDEN
4416	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4417	chmod g+rx $tmp_data_catalog
4418	if [[ $files_for_pes = false ]]
4419	then
4420	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4421	else
4422	mkdir $tmp_data_catalog/${frelout[$i]}
4423	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4424	fi
4425
4426	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4427	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4428	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4429	if [[ $files_for_pes = false ]]
4430	then
4431	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4432	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4433	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4434	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4435	else
4436	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4437	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4438	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4439	fi
4440
4441	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
4442	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4443	file_saved=true
4444
4445	else
4446	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
4447	archive_save=false
4448	fi
4449	if [[ $file_saved = true ]]
4450	then
4451	if [[ $files_for_pes = false ]]
4452	then
4453	cat /dev/null > ${pathout[$i]}
4454	else
4455	mkdir -p ${pathout[$i]}
4456	fi
4457	fi
4458	fi
4459
4460	# APPEND AUF LOKALER MASCHINE
4461	if [[ "${actionout[$i]}" = "a" ]]
4462	then
4463	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4464	then
4465	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}.${extout[$i]}\n"
4466	cat ${localout[$i]} >> ${pathout[$i]}.${extout[$i]}
4467	else
4468	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
4469	cat ${localout[$i]} >> ${pathout[$i]}
4470	fi
4471	fi
4472
4473	# KOPIEREN AUF LOKALER MASCHINE
4474	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
4475	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
4476	then
4477
4478	# KOPIEREN AUF EINPROZESSORMASCHINE
4479	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4480	then
4481	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
4482	if [[ $link_local_output = true ]]
4483	then
4484	printf " using ln -f\n"
4485	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4486	fi
4487	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4488	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
4489	then
4490	if [[ $link_local_output = true ]]
4491	then
4492	printf " ln failed, using cp...\n"
4493	fi
4494	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4495	fi
4496	else
4497	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
4498	if [[ $link_local_output = true ]]
4499	then
4500	printf " using ln -f\n"
4501	ln -f ${localout[$i]} ${pathout[$i]}
4502	fi
4503	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4504	if [[ ! -f "${pathout[$i]}" ]]
4505	then
4506	if [[ $link_local_output = true ]]
4507	then
4508	printf " ln failed, using cp...\n"
4509	fi
4510	cp ${localout[$i]} ${pathout[$i]}
4511	fi
4512	fi
4513
4514	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
4515	then
4516
4517	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
4518	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
4519	# WIRD DANN KOPIERT
4520	# PER MOVE UMBENANNT WERDEN
4521	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4522	if [[ $link_local_output = true ]]
4523	then
4524	printf " using ln -f\n"
4525	mkdir ${pathout[$i]}
4526	cd ${localout[$i]}
4527	for file in $(ls *)
4528	do
4529	ln -f $file ${pathout[$i]}
4530	done
4531	cd $TEMPDIR
4532	fi
4533	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4534	if [[ ! -f "${pathout[$i]}/_0000" ]]
4535	then
4536	if [[ $link_local_output = true ]]
4537	then
4538	printf " ln failed for .../_0000, using cp...\n"
4539	fi
4540	cp -r ${localout[$i]} ${pathout[$i]}
4541	fi
4542
4543	fi
4544	fi
4545	done
4546	if (( i != 0 ))
4547	then
4548	if [[ $transfer_problems = true ]]
4549	then
4550	printf "\n$striche\n *** OUTPUT-files saved"
4551	printf "\n +++ WARNING: some data transfers failed! \n"
4552	else
4553	printf "\n$striche\n *** all OUTPUT-files saved \n"
4554	fi
4555	fi
4556
4557
4558	# EVENTUELL FOLGEJOB STARTEN
4559	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4560	if [[ -f CONTINUE_RUN ]]
4561	then
4562
4563	if [[ $archive_save = true ]]
4564	then
4565
4566	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4567	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4568	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4569	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4570	# HANDEN
4571	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4572	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4573	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4574	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4575	then
4576	mc=`echo $mc \| sed 's/#/f/g'`
4577	fi
4578
4579
4580	# JOB STARTEN
4581	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4582	echo " $mc"
4583	printf "\n$striche\n"
4584	if [[ $localhost != $fromhost ]]
4585	then
4586
4587	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibms \|\| $localhost = lcflow \|\| $localhost = lckyu* ]]
4588	then
4589	echo "*** ssh will be used to initiate restart-runs!"
4590	echo " return_addres=\"$return_addres\" "
4591	echo " return_username=\"$return_username\" "
4592	if [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4593	then
4594	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4595	else
4596	if [[ $localhost = ibmkisti ]]
4597	then
4598	ssh $SSH_PORTOPT $usern@gaiad "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4599	else
4600	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4601	fi
4602	fi
4603	else
4604	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4605	locat=restart; exit
4606	fi
4607
4608	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4609	# DER AKTUELLE JOB ENDET
4610	if [[ $queue = special1q ]]
4611	then
4612	sleep 120
4613	else
4614	sleep 30
4615	fi
4616
4617	else
4618
4619	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4620	# RUFEN WERDEN, AUSSER AUF lcfimm
4621	cd $LOCAL_PWD
4622	if [[ $localhost = lcfimm ]]
4623	then
4624	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4625	elif [[ $localhost = lckyuh ]]
4626	then
4627	printf "\n +++ WARNING: no restart mechanism available for host \"$localhost\" "
4628	printf "\n please restart job manually using command:\n"
4629	printf "\n \"$mc\" "
4630	else
4631	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4632	fi
4633	cd - > /dev/null
4634	fi
4635	if [[ $localhost = lckyuh ]]
4636	then
4637	printf "\n$striche\n *** restart-run to be initiated manually\n"
4638	else
4639	printf "\n$striche\n *** restart-run initiated \n"
4640	fi
4641
4642
4643	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4644	# GEHOLT WORDEN SIND, LOESCHEN
4645	(( i = 0 ))
4646	while (( i < iin ))
4647	do
4648	(( i = i + 1 ))
4649	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4650	then
4651	rm -r $tmp_data_catalog/${frelin[$i]}
4652	fi
4653	done
4654
4655	else
4656
4657	printf "\n +++ no restart-run possible, since errors occured"
4658	printf "\n during the archive process"
4659	fi
4660
4661	fi
4662
4663
4664
4665	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4666	if [[ "$email_notification" != "none" ]]
4667	then
4668
4669	if [[ $localhost != $fromhost ]]
4670	then
4671	if [[ -f CONTINUE_RUN ]]
4672	then
4673	echo "PALM restart run necessary" > email_text
4674	echo "description header of actual run:" >> email_text
4675	cat CONTINUE_RUN >> email_text
4676	echo "mrun-command to restart:" >> email_text
4677	echo "$mc" >> email_text
4678	else
4679	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4680	fi
4681	mail $email_notification < email_text
4682	printf "\n *** email notification sent to \"$email_notification\" "
4683	fi
4684	fi
4685
4686
4687
4688	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4689	cd $HOME
4690	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4691
4692	else
4693
4694
4695	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4696	# CHENDE AKTIONEN DURCHGEFUEHRT
4697
4698	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4699	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
4700	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4701	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4702	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4703	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4704	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4705	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4706	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4707	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4708	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4709	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4710	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4711	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4712	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4713	if [[ $use_openmp = true ]]
4714	then
4715	mrun_com=${mrun_com}" -O $threads_per_task"
4716	fi
4717	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4718	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
4719	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4720	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4721	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4722	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4723	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4724	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4725	[[ "$check_namelist_files" = false ]] && mrun_com=${mrun_com}" -z"
4726	[[ "$combine_plot_fields" = false ]] && mrun_com=${mrun_com}" -Z"
4727	[[ "$max_par_io_str" != "" ]] && mrun_com=${mrun_com}" -w $max_par_io_str"
4728	if [[ $do_remote = true ]]
4729	then
4730	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4731	fi
4732
4733
4734	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4735	jobfile=jobfile.$RANDOM
4736
4737
4738	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4739	echo "mkdir $TEMPDIR" >> $jobfile
4740	echo "cd $TEMPDIR" >> $jobfile
4741
4742
4743	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4744	if [[ $do_trace = true ]]
4745	then
4746	echo "set -x" >> $jobfile
4747	else
4748	echo "set +vx" >> $jobfile
4749	fi
4750
4751
4752	# initialize the environment and load modules
4753	if [[ "$init_cmds" != "" ]]
4754	then
4755	echo "$init_cmds" >> $jobfile
4756	fi
4757	if [[ "$module_calls" != "" ]]
4758	then
4759	echo "$module_calls" >> $jobfile
4760	fi
4761
4762
4763	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4764	# DATEI FUER DEN JOB
4765	if [[ $( echo $host \| cut -c1-5 ) = lcsgi \|\| $host = ibmkisti ]]
4766	then
4767
4768	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4769	# KOPIEREN
4770	if [[ $restart_run != true ]]
4771	then
4772	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4773	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4774	fi
4775
4776	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4777	# (BEI JOBS AUF LOKALEM RECHNER REICHT CP)
4778	echo "set -x" >> $jobfile
4779	if [[ $host = $localhost ]]
4780	then
4781	echo "cp -r $working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4782	else
4783	if [[ $host != ibmkisti ]]
4784	then
4785	echo "scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4786	else
4787	# on KISTI's IBM firewall is only opened on interactive node
4788	echo "localdir=\`pwd\`" >> $jobfile
4789	echo "ssh $SSH_PORTOPT $remote_username@gaiad \"cd \$localdir; scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
4790	fi
4791	fi
4792	echo "export SOURCES_COMPLETE=true" >> $jobfile
4793
4794	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4795	# ARBEITSVERZEICHNIS VERSCHIEBEN
4796	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4797	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4798	echo "execute_mrun=true" >> $jobfile
4799	echo " " >> $jobfile
4800
4801	else
4802
4803	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4804	# SOWIE GEGEBENENFALLS DES MAKEFILES
4805	if [[ $do_compile = true ]]
4806	then
4807
4808	source_catalog=SOURCES_FOR_RUN_$fname
4809
4810	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4811	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4812	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4813	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4814	echo "export SOURCES_COMPLETE=true" >> $jobfile
4815	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4816
4817	for filename in $source_list
4818	do
4819	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4820	echo "cat > $filename << \"%END%\"" >> $jobfile
4821	cat $source_catalog/$filename >> $jobfile
4822	echo " " >> $jobfile
4823	echo "%END%" >> $jobfile
4824	echo " " >> $jobfile
4825	done
4826
4827	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4828	echo "cat > Makefile << \"%END%\"" >> $jobfile
4829	cat $source_catalog/Makefile >> $jobfile
4830	echo " " >> $jobfile
4831	echo "%END%" >> $jobfile
4832	echo " " >> $jobfile
4833
4834	echo "cd - > /dev/null" >> $jobfile
4835
4836	fi
4837
4838
4839	# ABSPEICHERN DER KONFIGURATIONSDATEI
4840	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4841	# Lines with #$ coming from the svn keyword substitution are
4842	# removed from the config file in order to avoid problems
4843	# with the SGE batch system
4844	echo "cat > $config_file << \"%END%\"" >> $jobfile
4845	if [[ $host = lckyuh ]]
4846	then
4847	# no cross compiler on compute node
4848	sed 's/frtpx/frt/g' $config_file >> $jobfile
4849	else
4850	sed 's/#$.*//g' $config_file >> $jobfile
4851	fi
4852	echo "%END%" >> $jobfile
4853	echo " " >> $jobfile
4854
4855
4856	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
4857	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4858	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
4859	if [[ $host = lckyuh ]]
4860	then
4861	sed 's/\/bin\/ksh/\/bin\/bash/g' ${PALM_BIN}/$mrun_script_name >> $jobfile
4862	else
4863	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
4864	fi
4865	echo "%END%" >> $jobfile
4866	echo "chmod u+x $mrun_script_name" >> $jobfile
4867	echo "execute_mrun=true" >> $jobfile
4868	echo " " >> $jobfile
4869
4870	fi
4871
4872
4873	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
4874	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
4875	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
4876	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
4877	if [[ $do_remote = true ]]
4878	then
4879	(( i = 0 ))
4880	while (( i < iin ))
4881	do
4882	(( i = i + 1 ))
4883	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
4884	if [[ "${transin[$i]}" = job ]]
4885	then
4886	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
4887	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
4888	echo " " >> $jobfile
4889	echo "%END%" >> $jobfile
4890	else
4891	echo "batch_scp $PORTOPT -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
4892	fi
4893
4894	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
4895	echo "if [[ \$? = 1 ]]" >> $jobfile
4896	echo "then" >> $jobfile
4897	echo " echo \" \" " >> $jobfile
4898	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
4899	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
4900	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
4901	echo " execute_mrun=false" >> $jobfile
4902	echo "fi" >> $jobfile
4903	done
4904	fi
4905
4906	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
4907	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
4908	echo "LOCAL_PWD=$working_directory" >> $jobfile
4909	echo "export LOCAL_PWD" >> $jobfile
4910
4911	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
4912	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
4913	echo "export LOCAL_MRUN_PATH" >> $jobfile
4914
4915	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
4916	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
4917	then
4918	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
4919	elif [[ $host = lcflow \|\| $localhost = lcflow ]]
4920	then
4921	echo "export PALM_BIN=$PALM_BIN" \| sed -e 's:'$HOME':$HOME:' >> $jobfile
4922	echo "export PATH=\$PATH:\$PALM_BIN" >> $jobfile
4923	fi
4924
4925	# MRUN AUF ZIELRECHNER AUFRUFEN (queue is workaround for ibmkisti)
4926	echo "set -x" >> $jobfile
4927	echo "queue=$queue" >> $jobfile
4928	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
4929	echo 'ls -al; echo `pwd`' >> $jobfile
4930	echo "cd \$HOME" >> $jobfile
4931	echo "rm -rf $TEMPDIR" >> $jobfile
4932
4933
4934
4935
4936	# JOB PER SUBJOB STARTEN
4937	if [[ $silent = false ]]
4938	then
4939	printf "\n "
4940	else
4941	printf "\n\n"
4942	fi
4943
4944	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $PORTOPT $jobfile
4945	rm -rf $jobfile
4946
4947
4948	fi # ENDE REMOTE-TEIL
4949
4950
4951
4952	# ENDE DER PROZEDUR

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