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source: palm/trunk/SCRIPTS/mrun @ 1184

Last change on this file since 1184 was 1184, checked in by heinze, 11 years ago
adjustments for ibmh concerning explicit use of queues cluster and express
Property svn:keywords set to `Id Rev`
File size: 180.9 KB

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1	#!/bin/ksh
2
3	# mrun - script for running PALM jobs
4
5	#--------------------------------------------------------------------------------#
6	# This file is part of PALM.
7	#
8	# PALM is free software: you can redistribute it and/or modify it under the terms
9	# of the GNU General Public License as published by the Free Software Foundation,
10	# either version 3 of the License, or (at your option) any later version.
11	#
12	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
13	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
14	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
15	#
16	# You should have received a copy of the GNU General Public License along with
17	# PALM. If not, see <http://www.gnu.org/licenses/>.
18	#
19	# Copyright 1997-2012 Leibniz University Hannover
20	#--------------------------------------------------------------------------------#
21	#
22	# Current revisions:
23	# ------------------
24	# use of cluster/express queue enabled(ibmh)
25	#
26	# Former revisions:
27	# -----------------
28	# $Id: mrun 1184 2013-06-17 14:06:44Z heinze $
29	#
30	# 1124 2013-04-09 15:46:52Z raasch
31	# variable "memory" is exported via typeset option -x, because otherwise an unknown
32	# side effect may lead to data loss while getopts is reading the script-option arguments
33	#
34	# 1122 2013-04-09 08:37:16Z heinze
35	# Bugfix: change type of variable last_char
36	#
37	# 1119 2013-04-05 15:11:19Z raasch
38	# Bugfix for setting -T option for subjob
39	#
40	# 1108 2013-03-05 07:03:32Z raasch
41	# bugfix for coupled runs on lckyut/lckyuh
42	#
43	# 1106 2013-03-04 05:31:38Z raasch
44	# --stdin argument for mpiexec on lckyuh
45	# -y and -Y settings output to header
46	#
47	# 1103 2013-02-20 02:15:53Z raasch
48	# default script runs again under ksh, because of unsolved problems with read
49	# from stdin: when bash script is called from a ksh, message "read error: 0:
50	# Resource temporarily unavailable" appears and script does not stop,
51	# further bash compatibility adjustments,
52	# shebang line replaced by /bin/bash when running jobs on lckyuh; no restarts
53	# on lckyuh, but mrun does not terminate and issues a warning instead
54	#
55	# 1101 2013-02-17 10:20:21Z raasch
56	# script now running under bash instead of ksh, which required small adjustments
57	# (output formatting with printf instead "typeset -L/-R", print replaced by echo,
58	# read from stdin),
59	# cross compilername on lckyuh compute nodes replaced by real compiler name
60	#
61	# 1099 2013-02-10 01:47:43Z raasch
62	# adjustments for Kyushu-University computing center (lckyuh - hayaka)
63	# and for Forwind cluster (lcflow)
64	# small further adjustments for lckyut
65	#
66	# 1094 2013-02-03 01:52:12Z raasch
67	# explicit ssh/scp port can be set in config file with environment variable
68	# scp_port. This port is handled to all ssh/scp/batch_scp calls.
69	# decalpha parts (yonsei) removed
70	#
71	# 2013-02-02 07:06:13Z raasch
72	# adjustments for Kyushu-University computing center (lckyut - tatara)
73	#
74	# 1083 2013-01-04 10:22:09Z maronga
75	# bugfix in parameter file check (read %cpp_options was missing)
76	#
77	# 1069 2012-11-28 16:18:43Z maronga
78	# bugfix: coupling mode was always set to mpi2, typos removed
79	#
80	# 1058 2012-11-21 07:00:35Z raasch
81	# Intel inspector (inspxe) is given the number of PEs instead of the number of
82	# nodes
83	#
84	# 1046 2012-11-09 14:38:45Z maronga
85	# code put under GPL (PALM 3.9)
86	#
87	# 21/03/94 - Siggi - first version finished
88	# 03/03/94 - Siggi - script development started
89	#
90	#--------------------------------------------------------------------------------#
91	# mrun - script for running PALM jobs
92	#--------------------------------------------------------------------------------#
93
94
95
96	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
97
98	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
99	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
100	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
101
102	AddFilenames=""
103	additional_conditions=""
104	add_source_path=""
105	afname=""
106	archive_save=true
107	archive_system=none
108	check_namelist_files=true
109	combine_plot_fields=true
110	compiler_name=""
111	cond1=""
112	cond2=""
113	config_file=.mrun.config
114	coupled_dist=""
115	coupled_mode="mpi1"
116	cpp_opts=""
117	cpp_options=""
118	cpumax=0
119	cpurest=0
120	delete_temporary_catalog=true
121	do_batch=false
122	do_compile=true
123	do_remote=false
124	do_stagein=true
125	do_stageout=true
126	do_trace=false
127	email_notification="none"
128	exclude=""
129	executable=""
130	execution_error=false
131	fimm=false
132	fname=test
133	fromhost=""
134	global_revision=""
135	group_number=none
136	host=""
137	host_file=""
138	hp=""
139	ignore_archive_error=false
140	input_list=""
141	interpreted_config_file=""
142	job_catalog="~/job_queue"
143	job_on_file=""
144	keep_data_from_previous_run=false
145	link_local_input=false
146	link_local_output=false
147	localhost_realname=$(hostname)
148	local_compile=false
149	local_dvrserver_running=.FALSE.
150	locat=normal
151	mainprog=""
152	makefile=""
153	max_par_io_str=""
154	mc=$0
155	while [[ $(echo $mc \| grep -c "/") != 0 ]]
156	do
157	mc=`echo $mc \| cut -f2- -d"/"`
158	done
159	module_calls=""
160	mrun_script_name=$mc
161	netcdf_inc=""
162	netcdf_lib=""
163	netcdf_support=false
164	node_usage=default
165	numprocs=""
166	numprocs_atmos=0
167	numprocs_ocean=0
168	OOPT=""
169	openmp=false
170	output_list=""
171	package_list=""
172	punkte="..........................................................."
173	queue=none
174	read_from_config=""
175	restart_run=false
176	if [[ `hostname` = rte10 ]]
177	then
178	return_addres=133.5.185.60
179	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
180	elif [[ `hostname` = climate0 ]]
181	then
182	return_addres=165.132.26.68
183	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
184	elif [[ `hostname` = urban00 ]]
185	then
186	return_addres=147.46.30.151
187	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
188	else
189	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
190	fi
191	return_password=""
192	return_username=$LOGNAME
193	remotecall=false
194	remote_username=""
195	run_coupled_model=false
196	run_mode=""
197	scirocco=false
198	store_on_archive_system=false
199	striche=" ----------------------------------------------------------------------------"
200	silent=false
201	source_list=""
202	source_path=SOURCE
203	tasks_per_node=""
204	threads_per_task=1
205	tmpcreate=false
206	tmp_data_catalog=""
207	transfer_problems=false
208	usern=$LOGNAME
209	use_openmp=false
210	version="MRUN 2.0 Rev$Rev: 1184 $"
211	working_directory=`pwd`
212	TOPT=""
213	XOPT=""
214	zeit=$( date \| cut -c 12-19 )
215
216	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 stagein_anz=0 stageout_anz=0
217	typeset -x -i memory=0 # has to be exported here, otherwise an unknown side
218	# effect may cause data loss when getopts is reading the
219	# script-option arguments
220	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek last_char_int maxcycle minuten nodes pes sekunden tp1
221
222
223
224
225	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
226	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
227
228	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
229	# EXPORTIERT WERDEN
230	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
231	export group_number input_list numprocs output_list queue run_mode
232
233
234
235	# FEHLERBEHANDLUNG
236	# BEI EXIT:
237	trap 'rm -rf $working_directory/tmp_mrun
238	if [[ $locat != localhost ]]
239	then
240	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
241	# then
242	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
243	#MRUN-calls on $localhost
244	#
245	#date and time user localhost remotehost termination mrun-command
246	#--------------------------------------------------------------------------------------------------------------------
247	#%STATEND%
248	# chmod 666 ${mrun_path}/statistik/mrun_statistik
249	# fi
250	#
251	# # EINTRAG IN DIE STATISTIK-DATEI
252	# string1=`date` #-L35
253	# string2=$usern #-L12
254	# string3=$localhost_realname #-L12
255	# string4=$host #-L12
256	# string5=$locat #-L12
257	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
258	# then
259	# if [[ $do_batch = true ]]
260	# then
261	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
262	# else
263	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
264	# fi
265	# fi
266	echo " " > /dev/null
267	fi
268
269	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
270	then
271
272	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
273	(( i = 0 ))
274	while (( i < iec ))
275	do
276	(( i = i + 1 ))
277	printf "\n *** Execution of ERROR-command:\n"
278	printf " >>> ${err_command[$i]}\n"
279	eval ${err_command[$i]}
280	done
281	if [[ -n $interpreted_config_file ]]
282	then
283	rm -rf $interpreted_config_file
284	fi
285	if [[ -n .mrun_environment ]]
286	then
287	rm -rf .mrun_environment
288	fi
289	if [[ $tmpcreate = true ]]
290	then
291	printf "\n *** Contents of \"$TEMPDIR\":\n"
292	ls -al; cd
293	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
294	fi
295	if [[ "$dvrserver_id" != "" ]]
296	then
297	echo "+++ killing dvrserver_id=$dvrserver_id"
298	kill $dvrserver_id
299	fi
300	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
301	then
302	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
303	fi
304	printf "\n\n+++ MRUN killed \n\n"
305	elif [[ $locat != control_c ]]
306	then
307	printf "\n\n --> all actions finished\n\n"
308	printf " Bye, bye $usern !!\n\n"
309	fi' exit
310
311
312	# BEI TERMINAL-BREAK:
313	trap 'rm -rf $working_directory/tmp_mrun
314	rm -rf $working_directory/tmp_check_namelist_files
315	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
316	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
317	then
318	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
319	fi
320	if [[ "$dvrserver_id" != "" ]]
321	then
322	echo "+++ killing dvrserver_id=$dvrserver_id"
323	kill $dvrserver_id
324	fi
325	printf "\n+++ MRUN killed by \"^C\" \n\n"
326	locat=control_c
327	exit
328	' 2
329
330
331	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
332	# BEEN SET
333	if [[ "$PALM_BIN" = "" ]]
334	then
335	printf "\n +++ environment variable PALM_BIN has not been set"
336	printf "\n please set it to the directory where the PALM scripts are located"
337	locat=palm_bin; exit
338	fi
339	export PATH=$PALM_BIN:$PATH
340
341
342
343	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
344	# FUER FOLGEJOBS BENOETIGT WIRD
345	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vw:xX:yY:zZ option
346	do
347	case $option in
348	(a) afname=$OPTARG;;
349	(A) store_on_archive_system=true; mc="$mc -A";;
350	(b) do_batch=true; mc="$mc -b";;
351	(B) delete_temporary_catalog=false; mc="$mc -B";;
352	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
353	(C) restart_run=true; mc="$mc -C";;
354	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
355	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
356	(F) job_on_file="-D"; mc="$mc -F";;
357	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
358	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
359	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
360	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
361	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
362	(I) ignore_archive_error=true; mc="$mc -I";;
363	(k) keep_data_from_previous_run=true; mc="$mc -k";;
364	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
365	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
366	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
367	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
368	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
369	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
370	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
371	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
372	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
373	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
374	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
375	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
376	(S) read_from_config=false; mc="$mc -S";;
377	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
378	(T) mrun_tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
379	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
380	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
381	(v) silent=true; mc="$mc -v";;
382	(w) max_par_io_str=$OPTARG; mc="$mc -w$OPTARG";;
383	(x) do_trace=true;set -x; mc="$mc -x";;
384	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
385	(y) ocean_file_appendix=true; mc="$mc -y";;
386	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
387	(z) check_namelist_files=false; mc="$mc -z";;
388	(Z) combine_plot_fields=false; mc="$mc -Z";;
389	(\?) printf "\n +++ unknown option $OPTARG \n"
390	printf "\n --> type \"$0 ?\" for available options \n"
391	locat=parameter;exit;;
392	esac
393	done
394
395
396	# EVTL. POSITIONSPARAMETER EINLESEN
397	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
398	(( to_shift = $OPTIND - 1 ))
399	shift $to_shift
400
401	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
402	if [[ "$1" = "?" ]]
403	then
404	(printf "\n *** mrun can be called as follows:\n"
405	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. -z -Z <modus> \n"
406	printf "\n Description of available options:\n"
407	printf "\n Option Description Default-Value"
408	printf "\n -a base name of input files equiv. -d"
409	printf "\n -A archiving when using file-attribute fl"
410	printf "\n -b batch-job on local machine ---"
411	printf "\n -B do not delete temporary directory at end ---"
412	printf "\n -c configuration file .mrun.config"
413	printf "\n -d base name of files attached to program test"
414	printf "\n -D preprocessor(cpp)-directives \"\" "
415	printf "\n -F create remote job file only ---"
416	printf "\n -h execution host $localhost_realname"
417	printf "\n -i INPUT control list \"\" "
418	printf "\n -I archiving errors of previous batch-jobs"
419	printf "\n will be ignored"
420	printf "\n -k keep data from previous run"
421	printf "\n -K additional conditions for controling"
422	printf "\n usage of conditional code and"
423	printf "\n env-variables in configuration file \"\" "
424	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
425	printf "\n -M Makefile name Makefile"
426	printf "\n -n node usage (shared/not_shared) depending on -h"
427	printf "\n -o OUTPUT control list \"\" "
428	printf "\n -O use OpenMP ---"
429	printf "\n -p software package list \"\" "
430	printf "\n -q queue \"$queue\" "
431	printf "\n -r run control list (combines -i -o) \"\" "
432	printf "\n -s filenames of routines to be compiled \"\" "
433	printf "\n must end with .f, .f90, .F, or .c !"
434	printf "\n use \"..\" for more than one file and wildcards"
435	printf "\n -s LM compiles all locally modified files"
436	printf "\n -S config file interpreted by shellscript ---"
437	printf "\n -t allowed cpu-time in seconds (batch) 0"
438	printf "\n -T tasks per node depending on -h"
439	printf "\n -u username on remote machine \"\" "
440	printf "\n -v no prompt for confirmation ---"
441	printf "\n -w maximum parallel io streams as given by -X"
442	printf "\n -x tracing of mrun for debug purposes ---"
443	printf "\n -X # of processors (on parallel machines) 1"
444	printf "\n -y add appendix \"_O\" to all local output"
445	printf "\n files (ocean precursor runs followed by"
446	printf "\n coupled atmosphere-ocean runs) ---"
447	printf "\n -Y run coupled model, \"#1 #2\" with"
448	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
449	printf "\n -z disable a priori parameter file check ---"
450	printf "\n -Z skip combine_plot_fields at the end of "
451	printf "\n the simulation ---"
452	printf "\n "
453	printf "\n Possible values of positional parameter <modus>:"
454	printf "\n \"?\" - this outline \n\n") \| more
455	exit
456	elif [[ "$1" != "" ]]
457	then
458	printf "\n +++ positional parameter $1 unknown \n"
459	locat=parameter; exit
460	fi
461
462
463
464	# KURZE STARTMELDUNG
465	printf "\n*** $version "
466	printf "\n will be executed. Please wait ..."
467
468
469
470	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
471	if [[ ! -f $config_file ]]
472	then
473	printf "\n\n +++ configuration file: "
474	printf "\n $config_file"
475	printf "\n does not exist"
476	locat=connect; exit
477	fi
478
479
480	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
481	line=""
482	grep "%host_identifier" $config_file > tmp_mrun
483	while read line
484	do
485	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
486	then
487	HOSTNAME=`echo $line \| cut -d" " -s -f2`
488	host_identifier=`echo $line \| cut -d" " -s -f3`
489	if [[ $localhost_realname = $HOSTNAME ]]
490	then
491	localhost=$host_identifier
492	break
493	fi
494	fi
495	done < tmp_mrun
496
497	if [[ "$localhost" = "" ]]
498	then
499	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
500	printf "\n for local host \"$localhost_realname\"."
501	printf "\n Please add line"
502	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
503	printf "\n to the configuration file."
504	locat=localhost; exit
505	fi
506
507
508	# HOSTSPEZIFISCHE VARIABLEN SETZEN
509	case $localhost_realname in
510	(r1\|r2\|h01\|b01) archive_system=tivoli;;
511	(cs*) archive_system=ut;;
512	(fimm.bccs.uib.no) fimm=true;;
513	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
514	(scirocco) scirocco=true;;
515	esac
516
517
518
519	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
520	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
521	[[ "$afname" = "" ]] && afname=$fname
522
523
524	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
525	if [[ "$run_mode" != "" ]]
526	then
527	input_list="$input_list $run_mode"
528	output_list="$output_list $run_mode"
529	fi
530
531
532	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
533	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
534	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
535	# STARTET)
536	if [[ "$fromhost" = "" ]]
537	then
538	fromhost=$localhost
539	fi
540
541
542	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
543	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
544	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
545	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
546	if [[ -n $host && "$host" != $localhost ]]
547	then
548	do_batch=true
549	do_remote=true
550	case $host in
551	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|nech\|necriam\|lcflow\|lckyoto\|lcsgib\|lcsgih\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
552	(*) printf "\n"
553	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
554	printf "\n is not available"
555	locat=nqs; (( iec = 0 )); exit;;
556	esac
557	else
558	host=$localhost
559	fi
560
561
562	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
563	if [[ -n $additional_conditions ]]
564	then
565	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
566	cond1=`echo $additional_conditions \| cut -d" " -f1`
567	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
568	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
569	if [[ -n $dummy ]]
570	then
571	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
572	locat=options; exit
573	fi
574	block=_$cond1
575	[[ -n $cond2 ]] && block=${block}_$cond2
576	fi
577
578
579	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
580	if [[ $run_coupled_model = true ]]
581	then
582
583	if [[ -n $coupled_dist ]]
584	then
585
586	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
587	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
588
589	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
590	then
591
592	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
593	printf "\n PEs (total) : $numprocs"
594	printf "\n PEs (atmosphere): $numprocs_atmos"
595	printf "\n PEs (ocean) : $numprocs_ocean"
596	locat=coupling; exit
597
598	fi
599
600	else
601
602	(( numprocs_ocean = $numprocs / 2 ))
603	(( numprocs_atmos = $numprocs / 2 ))
604
605	fi
606	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
607
608	# GET coupled_mode FROM THE CONFIG FILE
609	line=""
610	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
611	while read line
612	do
613	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && $(echo $line \| cut -d" " -s -f4) = $cond1 && $(echo $line \| cut -d" " -s -f4) = $cond2 ]]
614	then
615	coupled_mode="mpi2"
616	fi
617	done < tmp_mrun
618
619	fi
620
621
622	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
623	# ARCHIVIERUNG FEHLGESCHLAGEN IST
624	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
625	then
626	if [[ $ignore_archive_error = false ]]
627	then
628	printf "\n +++ data archiving of previous run failed"
629	printf "\n see directory \~/job_queue on remote machine"
630	locat=archive; exit
631	else
632	printf "\n +++ warning: data archiving in a previous run failed"
633	printf "\n MRUN continues, trying to get backup copy"
634	fi
635	fi
636
637
638	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
639	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
640	mrun_memory=$memory
641	mrun_group_number=$group_number
642	mrun_cpumax=$cpumax
643	mrun_numprocs=$numprocs
644
645
646	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
647	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
648	if [[ "$read_from_config" = false ]]
649	then
650
651	[[ $silent = false ]] && printf "\n Reading the configuration file... "
652	while read zeile
653	do
654	[[ $silent = false ]] && printf "."
655
656
657	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
658	# ERSETZEN
659	eval zeile=\"$zeile\"
660
661
662	# INTERPRETATION DER ZEILE
663	if [[ "$(echo $zeile)" = "" ]]
664	then
665	# LEERZEILE, KEINE AKTION
666	continue
667
668	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
669	then
670
671	# ZEILE IST KOMMENTARZEILE
672	true
673
674	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
675	then
676
677	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
678	zeile=$(echo $zeile \| cut -c2-)
679	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
680	var=`echo $zeile \| cut -d" " -f1`
681	value=`echo $zeile \| cut -d" " -s -f2`
682	for_host=`echo $zeile \| cut -d" " -s -f3`
683	for_cond1=`echo $zeile \| cut -d" " -s -f4`
684	for_cond2=`echo $zeile \| cut -d" " -s -f5`
685
686	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
687	then
688
689	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
690	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
691	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
692
693
694	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
695	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
696	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
697	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
698	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
699	# KONFIGURATIONSDATEI
700	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
701	then
702	eval $var=\$value
703
704	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
705	if [[ $do_trace = true ]]
706	then
707	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
708	fi
709	fi
710
711	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
712	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
713	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
714	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
715	if [[ $var = host ]]
716	then
717	if [[ -n $host && "$host" != $localhost ]]
718	then
719	do_batch=true
720	do_remote=true
721	case $host in
722	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lcflow\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
723	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
724	printf "\n is not available"
725	locat=nqs; exit;;
726	esac
727	else
728	host=$localhost
729	fi
730	fi
731
732	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
733	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
734	# DEN PROGRAMMEN BENOETIGT WERDEN
735	export $var
736	fi
737
738
739
740
741	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
742	then
743
744	# ZEILE DEFINIERT ERROR-KOMMANDO
745	(( iec = iec + 1 ))
746	zeile=$(echo $zeile \| cut -c4-)
747	err_command[$iec]="$zeile"
748
749	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
750	then
751
752	# ZEILE DEFINIERT INPUT-KOMMANDO
753	(( iic = iic + 1 ))
754	zeile=$(echo $zeile \| cut -c4-)
755	in_command[$iic]="$zeile"
756
757	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
758	then
759
760	# ZEILE DEFINIERT OUTPUT-KOMMANDO
761	(( ioc = ioc + 1 ))
762	zeile=$(echo $zeile \| cut -c4-)
763	out_command[$ioc]="$zeile"
764
765	else
766
767	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
768	# s2a: in/out - Feld
769	# s2b: loc - Feld (optional)
770	# s2c: tr/ar - Feld (optional)
771	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
772	s1=`echo $zeile \| cut -d" " -f1`
773	s2=`echo $zeile \| cut -d" " -s -f2`
774	s2a=$(echo $s2 \| cut -d":" -f1)
775	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
776	then
777	s2b=""
778	s2c=""
779	else
780	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
781	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
782	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
783	fi
784	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
785	s3=`echo $zeile \| cut -d" " -f3`
786	s4=`echo $zeile \| cut -d" " -s -f4`
787	s5=`echo $zeile \| cut -d" " -s -f5`
788	s6=`echo $zeile \| cut -d" " -s -f6`
789
790
791	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
792	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
793	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
794	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
795	# HANDEN SEIN MUSS (D.H. s2b = loc)
796	IFSALT="$IFS"; IFS="$IFS:"
797	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
798	then
799	found=false
800	for actual in $input_list
801	do
802	for formal in $s3
803	do
804	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
805	done
806	done
807	if [[ $found = true ]]
808	then
809	(( iin = iin + 1 ))
810	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
811	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
812	extin[$iin]=$s6
813	fi
814	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
815	then
816	found=false
817	for actual in $output_list
818	do
819	for formal in $s3
820	do
821	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
822	done
823	done
824	if [[ $found = true ]]
825	then
826	(( iout = iout + 1 ))
827	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
828	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
829	fi
830	elif [[ "$s2a" != in && "$s2a" != out ]]
831	then
832	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
833	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
834	locat=connect; exit
835	fi
836	IFS="$IFSALT"
837	fi
838	done < $config_file
839
840	else
841
842
843	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
844	[[ $silent = false ]] && printf "..."
845	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
846	export interpreted_config_file=.icf.$RANDOM
847
848
849
850	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
851	# VERFUEGUNG STELLEN
852	cat > .mrun_environment << %%END%%
853	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
854	config_file = '$config_file', do_remote = '$do_remote',
855	do_trace = '$do_trace', host = '$host',
856	input_list = '$input_list', icf = '$interpreted_config_file',
857	localhost = '$localhost', output_list = '$output_list' /
858
859	%%END%%
860
861	if [[ $localhost_realname = "sx-fep" ]]
862	then
863	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
864	else
865
866	if [[ "$host" != $localhost ]]
867	then
868
869	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
870	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
871	if [[ $? != 0 ]]
872	then
873	printf "\n\n +++ no interpret_config found"
874	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
875	locat=interpret_config; exit
876	fi
877	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
878	$interpret_config_executable
879
880	else
881
882	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
883	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
884	then
885	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
886	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
887	locat=interpret_config; exit
888	else
889	interpret_config${block}.x
890	fi
891
892	fi
893	fi
894	rm .mrun_environment
895
896
897	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
898	chmod u+x $interpreted_config_file
899	export PATH=$PATH:.
900	. $interpreted_config_file
901	rm $interpreted_config_file
902
903	fi
904
905
906	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
907	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
908	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
909	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
910	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
911	[[ "$max_par_io_str" != "" ]] && maximum_parallel_io_streams=$max_par_io_str
912	[[ "$mrun_tasks_per_node" != "" ]] && tasks_per_node=$mrun_tasks_per_node
913
914
915	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
916	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
917	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
918	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
919	if [[ "$SOURCES_COMPLETE" = "" ]]
920	then
921
922	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
923	# VEREINBART WURDE
924	source_path=""
925	line=""
926	grep "%source_path" $config_file > tmp_mrun
927	while read line
928	do
929	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
930	then
931	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
932	then
933	global_source_path=`echo $line \| cut -d" " -f2`
934	fi
935	fi
936	done < tmp_mrun
937
938	line=""
939	found=false
940	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
941	while read line
942	do
943	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
944	then
945	if [[ $found = true ]]
946	then
947	printf "\n\n +++ more than one source path found in configuration file"
948	printf "\n for local host \"$localhost\" "
949	locat=source_path; exit
950	fi
951	source_path=`echo $line \| cut -d" " -f2`
952	found=true
953	fi
954	done < tmp_mrun
955	rm tmp_mrun
956
957	if [[ "$source_path" = "" ]]
958	then
959	if [[ "$global_source_path" != "" ]]
960	then
961	source_path=$global_source_path
962	else
963	printf "\n\n +++ no source path found in configuration file"
964	printf "\n for local host \"$localhost\" "
965	locat=source_path; exit
966	fi
967	fi
968	eval source_path=$source_path
969
970	if [[ ! -d $source_path ]]
971	then
972	printf "\n\n +++ source path \"$source_path\" on local host"
973	printf "\n \"$localhost\" does not exist"
974	locat=source_path; exit
975	fi
976
977	fi
978
979
980	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
981	# DURCH OPTION -G MITGETEILT)
982	if [[ "$global_revision" = "" && $host != "ibmkisti" ]]
983	then
984	global_revision=`svnversion $source_path 2>/dev/null`
985	global_revision="Rev: $global_revision"
986	fi
987
988
989	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
990	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
991	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
992	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
993	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
994	if [[ -n $host && "$host" != $localhost ]]
995	then
996	do_batch=true
997	do_remote=true
998	case $host in
999	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lcflow\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
1000	(*) printf "\n"
1001	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
1002	printf "\n is not available"
1003	locat=nqs; (( iec = 0 )); exit;;
1004	esac
1005	else
1006	host=$localhost
1007	fi
1008
1009
1010	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
1011	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1012	then
1013
1014	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
1015	if [[ ! -n $numprocs ]]
1016	then
1017	printf "\n"
1018	printf "\n +++ option \"-K parallel\" requires additional specification"
1019	printf "\n of the number of processors to be used by"
1020	printf "\n mrun-option \"-X\" or by environment-variable"
1021	printf "\n \"numprocs\" in the configuration file"
1022	locat=numprocs; (( iec = 0 )); exit
1023	fi
1024
1025	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
1026	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
1027	# GESAMTPROZESSORANZAHL IST
1028	if [[ "$tasks_per_node" = "" && $host != lcflow && $host != lcxt5m ]]
1029	then
1030	printf "\n"
1031	printf "\n +++ option \"-T\" (tasks per node) is missing"
1032	printf "\n set -T option or define tasks_per_node in the config file"
1033	locat=tasks_per_node; (( iec = 0 )); exit
1034	fi
1035	if [[ $host != lcflow && $host != lcxt5m ]]
1036	then
1037	(( ival = $tasks_per_node ))
1038	(( pes = numprocs ))
1039	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1040	# then
1041	# (( pes = pes - 1 ))
1042	# fi
1043	(( ii = pes / ival ))
1044	if (( pes - ii * ival > 0 ))
1045	then
1046	printf "\n"
1047	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1048	printf "\n divisor of the total number of processors (option \"-X\")"
1049	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1050	locat=tasks_per_node; (( iec = 0 )); exit
1051	fi
1052	fi
1053
1054
1055	# IBMY HAT NUR EINEN KNOTEN
1056	if [[ $host = ibmy ]]
1057	then
1058	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1059	then
1060	printf "\n"
1061	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1062	printf "\n total number of processors (option \"-X\")"
1063	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1064	locat=tasks_per_node; (( iec = 0 )); exit
1065	fi
1066	fi
1067
1068
1069	# SETTINGS FOR SUBJOB-COMMAND
1070	OOPT="-O $threads_per_task"
1071
1072	# GESAMTZAHL DER KNOTEN BESTIMMEN
1073	if [[ "$tasks_per_node" != "" ]]
1074	then
1075	TOPT="-T $tasks_per_node"
1076	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1077	fi
1078
1079	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1080	# SETZEN
1081	if [[ $node_usage = default ]]
1082	then
1083	if [[ $host = ibms ]]
1084	then
1085	node_usage=shared
1086	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1087	then
1088	node_usage=singlejob
1089	else
1090	node_usage=not_shared
1091	fi
1092	fi
1093
1094	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
1095	then
1096	printf "\n"
1097	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1098	printf "\n \"shared\" or \"not_shared\""
1099	locat=tasks_per_node; (( iec = 0 )); exit
1100	fi
1101
1102	fi
1103
1104	# PRUEFEN, OB HOSTFILE EXISTIERT
1105	if [[ -n $hostfile ]]
1106	then
1107	if [[ ! -f $hostfile ]]
1108	then
1109	printf "\n"
1110	printf "\n +++ hostfile \"$hostfile\" does not exist"
1111	locat=hostfile; exit
1112	fi
1113	fi
1114
1115	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1116	if [[ $host = ibmy && $do_remote = false ]]
1117	then
1118	if [[ ! -f $HOME/.rhosts ]]
1119	then
1120	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1121	printf "\n\n *** file:"
1122	printf "\n $HOME/.rhosts"
1123	printf "\n was created\n"
1124	fi
1125	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1126	then
1127	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1128	printf "\n\n *** file:"
1129	printf "\n $HOME/.rhosts"
1130	printf "\n was extended by the name of the current host\n"
1131	fi
1132	fi
1133
1134
1135	# Set default value for the maximum number of parallel io streams
1136	if [[ "$maximum_parallel_io_streams" = "" ]]
1137	then
1138	maximum_parallel_io_streams=$numprocs
1139	fi
1140
1141
1142	# Set port number option for calls of ssh/scp, subjob and batch_scp scripts
1143	if [[ "$scp_port" != "" ]]
1144	then
1145	PORTOPT="-P $scp_port"
1146	SSH_PORTOPT="-p $scp_port"
1147	fi
1148
1149
1150	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1151	if [[ $queue = none ]]
1152	then
1153	case $host in
1154	(ibmh) queue=cluster;;
1155	(ibmkisti) queue=class.32plus;;
1156	(ibmy) queue=parallel;;
1157	(lckiaps) queue=normal;;
1158	(lckyoto) queue=ph;;
1159	(lckyuh) queue=fx-single;;
1160	(lckyut) queue=cx-single;;
1161	(lcsgib) queue=testq;;
1162	(lcsgih) queue=testq;;
1163	(lctit) queue=S;;
1164	(nech) queue=none;;
1165	(necriam) queue=SP;;
1166	(unics) queue=unics;;
1167	esac
1168	fi
1169
1170
1171	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1172	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1173	# ERMITTELN
1174	(( i = 0 ))
1175	while (( i < iin ))
1176	do
1177	(( i = i + 1 ))
1178	(( maxcycle = 0 ))
1179
1180	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1181	if [[ "${actionin[$i]}" = di ]]
1182	then
1183	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1184	# REM-MASCHINE AUSWERTEN
1185	eval filename=${pathin[$i]}/${endin[$i]}
1186	else
1187	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1188	# REM-MASCHINE AUSWERTEN
1189	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1190	fi
1191	eval pathname=${pathin[$i]}
1192
1193	# SAVE INPUT FILE NAME FOR PARAMETER FILE CHECK
1194	if [[ ("${transin[$i]}" = job) && (-f $filename) ]]
1195	then
1196	filename_input=$filename
1197	fi
1198
1199	# PRUEFEN AUF VORHANDENSEIN
1200	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1201	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1202	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1203	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1204	then
1205	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1206	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1207	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1208	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1209	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1210	if [[ "${transin[$i]}" != "locopt" ]]
1211	then
1212	printf "\n\n +++ INPUT-file: "
1213	if [[ "${extin[$i]}" = "" ]]
1214	then
1215	printf "\n $filename"
1216	else
1217	printf "\n $filename.${extin[$i]}"
1218	fi
1219	printf "\n does not exist\n"
1220	locat=input; exit
1221	else
1222	transin[$i]="unavailable"
1223	fi
1224	else
1225
1226	# ZYKLUSNUMMER FESTSTELLEN
1227	ls -1 -d $filename > filelist 2>/dev/null
1228	ls -1 -d $filename.* >> filelist 2>/dev/null
1229	while read zeile
1230	do
1231	cycle=$(echo $zeile \| cut -f2 -d".")
1232	if [[ "$cycle" = "$zeile" ]]
1233	then
1234	(( icycle = 0 ))
1235	elif [[ "$cycle" = "${extin[$i]}" ]]
1236	then
1237	(( icycle = 0 ))
1238	else
1239	(( icycle = $cycle ))
1240	fi
1241	if (( icycle > maxcycle ))
1242	then
1243	(( maxcycle = icycle ))
1244	file_to_be_used=$zeile
1245	fi
1246	done <filelist
1247	rm filelist
1248
1249	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1250	if (( maxcycle > 0 ))
1251	then
1252	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1253	then
1254	filename=${filename}.$maxcycle.${extin[$i]}
1255	else
1256	filename=${filename}.$maxcycle
1257	fi
1258	else
1259	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1260	then
1261	filename=${filename}.${extin[$i]}
1262	fi
1263	fi
1264
1265	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1266	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1267	absnamein[$i]=$filename
1268	if (( maxcycle > 0 ))
1269	then
1270	if [[ "${actionin[$i]}" = di ]]
1271	then
1272	frelin[$i]=${endin[$i]}.$maxcycle
1273	else
1274	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1275	fi
1276	else
1277	if [[ "${actionin[$i]}" = di ]]
1278	then
1279	frelin[$i]=${endin[$i]}
1280	else
1281	frelin[$i]=${afname}${endin[$i]}
1282	fi
1283	fi
1284
1285	fi
1286	done
1287
1288	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1289	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1290	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1291	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1292	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1293	(( i = 0 ))
1294	while (( i < iout ))
1295	do
1296	(( i = i + 1 ))
1297	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1298	then
1299	if [[ "${actionout[$i]}" = tr ]]
1300	then
1301	actionout[$i]=""
1302	elif [[ "${actionout[$i]}" = trpe ]]
1303	then
1304	actionout[$i]=pe
1305	elif [[ "${actionout[$i]}" = tra ]]
1306	then
1307	actionout[$i]=a
1308	fi
1309	(( maxcycle = 0 ))
1310	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1311	eval catalogname=${pathout[$i]}
1312	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1313	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1314	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1315	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1316	then
1317
1318	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1319	if cat /dev/null > $filename
1320	then
1321	rm $filename
1322	else
1323
1324	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1325	if [[ ! -d $catalogname ]]
1326	then
1327	if mkdir -p $catalogname
1328	then
1329	printf "\n\n *** directory:"
1330	printf "\n $catalogname"
1331	printf "\n was created\n"
1332	else
1333	printf "\n\n +++ OUTPUT-file:"
1334	printf "\n $filename"
1335	printf "\n cannot be created, because directory does not exist"
1336	printf "\n and cannot be created either"
1337	printf "\n"
1338	locat=output ; exit
1339	fi 2>/dev/null
1340	else
1341	printf "\n\n +++ OUTPUT-file:"
1342	printf "\n $filename"
1343	printf "\n cannot be created, although directory exists"
1344	printf "\n"
1345	locat=output ; exit
1346	fi
1347	fi 2>/dev/null
1348	else
1349
1350	# ZYKLUSNUMMER FESTSTELLEN
1351	ls -1 -d $filename > filelist 2>/dev/null
1352	ls -1 -d $filename.* >> filelist 2>/dev/null
1353	while read zeile
1354	do
1355	cycle=$(echo $zeile \| cut -f2 -d".")
1356	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1357	then
1358	(( icycle = 1 ))
1359	else
1360	(( icycle = $cycle + 1 ))
1361	fi
1362	if (( icycle > maxcycle ))
1363	then
1364	(( maxcycle = icycle ))
1365	fi
1366	done <filelist
1367	rm filelist
1368	fi
1369
1370	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1371	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1372	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1373	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1374	if [[ "${actionout[$i]}" != a ]]
1375	then
1376	if (( maxcycle > 0 ))
1377	then
1378	filename=${filename}.$maxcycle
1379	if cat /dev/null > $filename
1380	then
1381	rm $filename
1382	else
1383	printf "\n +++ OUTPUT-file:"
1384	printf "\n $filename"
1385	printf "\n cannot be created"
1386	locat=output ; exit
1387	fi
1388	fi
1389	else
1390	(( maxcycle = maxcycle - 1 ))
1391	if (( maxcycle > 0 ))
1392	then
1393	filename=${filename}.$maxcycle
1394	fi
1395	fi
1396
1397	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1398	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1399	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1400	pathout[$i]=$filename
1401	if (( maxcycle > 0 ))
1402	then
1403	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1404	else
1405	frelout[$i]=${fname}${endout[$i]}
1406	fi
1407
1408	fi
1409	done
1410
1411
1412	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1413	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1414	then
1415	if [[ "$dvr_inc" = "" ]]
1416	then
1417	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1418	printf "\n This is required for the dvrp_graphics package.\n"
1419	locat=dvr; exit
1420	fi
1421	if [[ "$dvr_lib" = "" ]]
1422	then
1423	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1424	printf "\n This is required for the dvrp_graphics package.\n"
1425	locat=dvr; exit
1426	fi
1427	fi
1428
1429
1430	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1431	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1432	# UEBERSETZT ZU WERDEN)
1433	if [[ "$mainprog" = "" && "$executable" = "" ]]
1434	then
1435	printf "\n +++ neither main program nor executable defined"
1436	locat=source; exit
1437	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1438	then
1439	printf "\n +++ main program as well as executable defined"
1440	locat=source; exit
1441	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1442	then
1443	do_compile=false
1444	fi
1445
1446
1447	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1448	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1449	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1450	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1451	then
1452	rm -rf SOURCES_FOR_RUN_$fname
1453	mkdir SOURCES_FOR_RUN_$fname
1454	fi
1455
1456
1457	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1458	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1459	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1460	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1461	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1462	then
1463
1464	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1465
1466	if [[ "$source_list" = LOCALLY_MODIFIED ]]
1467	then
1468
1469	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1470	source_list=""
1471	cd $source_path
1472
1473
1474	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1475	if [[ ! -d .svn ]]
1476	then
1477	printf "\n\n +++ source directory"
1478	printf "\n \"$source_path\" "
1479	printf "\n is not under control of \"subversion\"."
1480	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1481	fi
1482
1483
1484	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1485	Filenames=""
1486	svn status > tmp_mrun
1487	while read line
1488	do
1489	firstc=`echo $line \| cut -c1`
1490	if [[ $firstc = M \|\| $firstc = "?" ]]
1491	then
1492	Name=`echo "$line" \| cut -c8-`
1493	extension=`echo $Name \| cut -d. -f2`
1494	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1495	then
1496	Filenames="$Filenames "$Name
1497	fi
1498	fi
1499	done < tmp_mrun
1500
1501
1502	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1503	for dateiname in $Filenames
1504	do
1505	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1506	source_list=$source_list"$dateiname "
1507	done
1508
1509	cd - > /dev/null
1510
1511
1512	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1513	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1514	# VORHANDEN
1515	elif [[ "$source_list" != "" && $restart_run != true ]]
1516	then
1517
1518	cd $source_path
1519
1520	for filename in $source_list
1521	do
1522
1523	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1524	if [[ $(echo $filename \| grep -c "/") != 0 ]]
1525	then
1526	printf "\n +++ source code file: $filename"
1527	printf "\n must not contain (\"/\") "
1528	locat=source; exit
1529	fi
1530
1531	if [[ ! -f $filename ]]
1532	then
1533	printf "\n +++ source code file: $filename"
1534	printf "\n does not exist"
1535	locat=source; exit
1536	else
1537	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1538	fi
1539
1540	done
1541
1542	cd - > /dev/null
1543
1544	fi
1545
1546
1547	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1548	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1549	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1550	if [[ $restart_run != true ]]
1551	then
1552
1553	if [[ ! -f "$source_path/$mainprog" ]]
1554	then
1555	printf "\n\n +++ main program: $mainprog"
1556	printf "\n does not exist in source directory"
1557	printf "\n \"$source_path\"\n"
1558	locat=source; exit
1559	else
1560	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1561	then
1562	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1563	source_list=${mainprog}" $source_list"
1564	fi
1565	fi
1566	fi
1567
1568
1569	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1570	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1571	if [[ "$restart_run" != true ]]
1572	then
1573	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1574	if [[ ! -f $makefile ]]
1575	then
1576	printf "\n +++ file \"$makefile\" does not exist"
1577	locat=make; exit
1578	else
1579	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1580	fi
1581	fi
1582
1583
1584	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1585	if [[ $restart_run != true && "$add_source_path" != "" ]]
1586	then
1587
1588	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1589	if [[ ! -d $add_source_path ]]
1590	then
1591	printf "\n\n +++ WARNING: additional source code directory"
1592	printf "\n \"$add_source_path\" "
1593	printf "\n does not exist or is not a directory."
1594	printf "\n No source code will be used from this directory!\n"
1595	add_source_path=""
1596	if [[ $silent == false ]]
1597	then
1598	sleep 3
1599	fi
1600	else
1601
1602	cd $add_source_path
1603	found=false
1604
1605	Names=$(ls -1 *.f90 2>&1)
1606	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1607	Names=$(ls -1 *.F90 2>&1)
1608	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1609	Names=$(ls -1 *.F 2>&1)
1610	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1611	Names=$(ls -1 *.f 2>&1)
1612	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1613	Names=$(ls -1 *.c 2>&1)
1614	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1615
1616	cd - > /dev/null
1617	cd SOURCES_FOR_RUN_$fname
1618
1619	# COPY MAKEFILE IF EXISTING
1620	if [[ -f $add_source_path/Makefile ]]
1621	then
1622	printf "\n\n *** user Makefile from directory"
1623	printf "\n \"$add_source_path\" is used \n"
1624	if [[ $silent == false ]]
1625	then
1626	sleep 1
1627	fi
1628	cp $add_source_path/Makefile .
1629	fi
1630
1631	for dateiname in $AddFilenames
1632	do
1633	if [[ -f $dateiname ]]
1634	then
1635	printf "\n +++ source code file \"$dateiname\" found in additional"
1636	printf "\n source code directory \"$add_source_path\" "
1637	printf "\n but was also given with option \"-s\" which means that it should be taken"
1638	printf "\n from directory \"$source_path\"."
1639	locat=source; exit
1640	fi
1641
1642	cp $add_source_path/$dateiname .
1643	source_list="$source_list $dateiname"
1644
1645	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1646	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1647	then
1648	printf "\n\n +++ user file \"$dateiname\" "
1649	printf "\n is not listed in Makefile \n"
1650	locat=source; exit
1651	else
1652
1653	# Default User-Interface von der Liste entfernen, falls Datei
1654	# ein User-Interface enthaelt
1655	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1656	# then
1657	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1658	# then
1659	# rm -rf user_interface.f90
1660	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1661	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1662	# printf "\n since a user-interface is found in file"
1663	# printf "\n \"$add_source_path/$dateiname\" \n"
1664	# sleep 3
1665	# else
1666	if [[ $found = false ]]
1667	then
1668	found=true
1669	printf "\n\n *** following user file(s) added to the"
1670	printf " files to be translated:\n "
1671	fi
1672	printf "$dateiname "
1673	if [[ $silent == false ]]
1674	then
1675	sleep 0.5
1676	fi
1677
1678	fi
1679	done
1680	[[ $found = true ]] && printf "\n"
1681	cd - > /dev/null
1682	fi
1683	fi
1684
1685
1686	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1687	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1688	if [[ $restart_run != true && -n $package_list ]]
1689	then
1690
1691	cd $source_path
1692
1693	for package in $package_list
1694	do
1695
1696	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1697
1698	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1699	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1700	# LIEFERT
1701	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1702
1703
1704	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1705	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1706	for source_list_name in $package_source_list
1707	do
1708	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1709	then
1710
1711	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1712	ending=`echo $source_list_name \| cut -f2 -d.`
1713	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1714	then
1715	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1716	source_list="$source_list $source_list_name"
1717	fi
1718	fi
1719	done
1720	done
1721
1722	cd - > /dev/null
1723	fi
1724
1725
1726	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1727	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1728	# if [[ "$restart_run" != true ]]
1729	# then
1730	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1731	# if [[ ! -f $makefile ]]
1732	# then
1733	# printf "\n +++ file \"$makefile\" does not exist"
1734	# locat=make; exit
1735	# else
1736	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1737	# fi
1738	# fi
1739
1740	fi # do_compile=true
1741
1742
1743	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1744	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1745	if [[ $do_compile = true ]]
1746	then
1747
1748	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1749	# ZUSAMMENSETZEN
1750	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1751	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1752	then
1753	cpp_options="${cpp_options},-D__ibm=__ibm"
1754	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1755	then
1756	cpp_options="$cpp_options -D__nec"
1757	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1758	then
1759	cpp_options="$cpp_options -D__lc"
1760	else
1761	cpp_options="$cpp_options -D__$localhost"
1762	fi
1763
1764	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1765	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1766	then
1767	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1768	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1769	else
1770	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1771	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1772	fi
1773
1774	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1775	if [[ -n $package_list ]]
1776	then
1777	for package in $package_list
1778	do
1779	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1780	then
1781	if [[ $package != "dvrp_graphics+1PE" ]]
1782	then
1783	cpp_options="${cpp_options},-D__$package=__$package"
1784	else
1785	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1786	export use_seperate_pe_for_dvrp_output=true
1787	fi
1788	else
1789	if [[ $package != "dvrp_graphics+1PE" ]]
1790	then
1791	cpp_options="$cpp_options -D__$package"
1792	else
1793	cpp_options="$cpp_options -D__dvrp_graphics"
1794	export use_seperate_pe_for_dvrp_output=true
1795	fi
1796	fi
1797	done
1798	fi
1799
1800	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1801	if [[ -n $cpp_opts ]]
1802	then
1803	for popts in $cpp_opts
1804	do
1805	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1806	then
1807	cpp_options="${cpp_options},-D__$popts=__$popts"
1808	else
1809	cpp_options="$cpp_options -D__$popts"
1810	fi
1811	done
1812	fi
1813
1814	else
1815
1816
1817	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1818	if [[ $do_remote = false ]]
1819	then
1820	if [[ ! -f $executable ]]
1821	then
1822	printf "\n +++ executable file: $executable"
1823	printf "\n does not exist"
1824	locat=executable; exit
1825	fi
1826	fi
1827	fi
1828
1829
1830	# JOBMODUS FESTSTELLEN
1831	if [[ "$ENVIRONMENT" = BATCH ]]
1832	then
1833	jobmo=BATCH
1834	else
1835	jobmo=INTERACTIVE
1836	fi
1837
1838
1839	# no interactive runs on lctit
1840	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
1841	then
1842	printf "\n +++ no interactive runs allowed on host \"$host\" "
1843	printf "\n please submit batch job using mrun option \"-b\" \n"
1844	locat=normal; exit
1845	fi
1846
1847
1848	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1849	# DURCH BENUTZER ANDERWEITIG VEREINBART
1850	if [[ "$compiler_name" = "" ]]
1851	then
1852
1853	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
1854	locat=compiler_name; exit
1855
1856	fi
1857
1858
1859	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
1860	[[ $localhost = necriam ]] && compiler_name=mpif90
1861
1862
1863
1864	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
1865	kennung=$RANDOM
1866	if [[ "$tmp_user_catalog" = "" ]]
1867	then
1868	if [[ $localhost = ibmh ]]
1869	then
1870	tmp_user_catalog=$SCRATCH
1871	elif [[ $localhost = nech ]]
1872	then
1873	tmp_user_catalog=$WRKSHR
1874	else
1875	tmp_user_catalog=/tmp
1876	fi
1877	fi
1878	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
1879
1880
1881	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
1882	# BESTIMMEN
1883	if [[ "$tmp_data_catalog" = "" ]]
1884	then
1885	if [[ $localhost = nech ]]
1886	then
1887	tmp_data_catalog=$WRKSHR/mrun_restart_data
1888	else
1889	tmp_data_catalog=/tmp/mrun_restart_data
1890	fi
1891	fi
1892
1893
1894	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
1895	# ERSETZEN
1896	if [[ $do_remote = false && $do_compile = true ]]
1897	then
1898	eval fopts=\"$fopts\"
1899	eval lopts=\"$lopts\"
1900	fi
1901
1902
1903
1904	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
1905	fopts="$fopts $netcdf_inc $dvr_inc"
1906	lopts="$lopts $netcdf_lib $dvr_lib"
1907	ROPTS="$ropts"
1908	# if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcflow \|\| $host = lcxe6 \|\| $host = lcxt5m \|\| $host = lck \|\| $host = lckiaps \|\| $host = lckordi \|\| $host = lcsb \|\| $host ) && -n $numprocs ]]
1909	# then
1910	XOPT="-X $numprocs"
1911	# fi
1912
1913
1914
1915	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
1916	# GRAMM BENOETIGT
1917	done=false
1918	while [[ $done = false ]]
1919	do
1920	cputime=$cpumax
1921	if (( $cputime == 0 ))
1922	then
1923	if [[ $do_batch = true ]]
1924	then
1925	printf "\n +++ cpu-time is undefined"
1926	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
1927	printf "\n >>> "
1928	read cputime 1>/dev/null 2>&1
1929	else
1930	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
1931	fi
1932	else
1933	done=true
1934	fi
1935	cpumax=$cputime
1936	done
1937
1938	(( minuten = cputime / 60 ))
1939	(( sekunden = cputime - minuten * 60 ))
1940
1941
1942	# PRUEFEN DER KERNSPEICHERANFORDERUNG
1943	if [[ $do_batch = true ]]
1944	then
1945	done=false
1946	while [[ $done = false ]]
1947	do
1948	if (( memory == 0 ))
1949	then
1950	printf "\n +++ memory demand is undefined"
1951	printf "\n >>> Please type memory in MByte per process as INTEGER:"
1952	printf "\n >>> "
1953	read memory 1>/dev/null 2>&1
1954	else
1955	done=true
1956	fi
1957	done
1958	fi
1959
1960
1961	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
1962	if [[ $do_remote = true && -z $remote_username ]]
1963	then
1964	while [[ -z $remote_username ]]
1965	do
1966	printf "\n +++ username on remote host \"$host\" is undefined"
1967	printf "\n >>> Please type username:"
1968	printf "\n >>> "
1969	read remote_username
1970	done
1971	mc="$mc -u$remote_username"
1972	fi
1973
1974	# CHECK FOR INITIAL COMMANDS AFTER LOGIN
1975	if [[ "$login_init_cmd" != "" ]]
1976	then
1977	export init_cmds="${login_init_cmd};"
1978	fi
1979
1980
1981	# set module load command and export for subjob
1982	if [[ "$modules" != "" ]]
1983	then
1984	if [[ $host = lctit ]]
1985	then
1986	export module_calls=". $modules"
1987	else
1988	export module_calls="module load ${modules};"
1989	fi
1990	fi
1991
1992	# bugfix for wrong netcdf module and for netCDF4 usage in case of mpt
1993	if [[ $host = lcsgib \|\| $host = lcsgih ]]
1994	then
1995	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
1996	then
1997	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
1998	fi
1999	# if [[ $(echo $module_calls \| grep -c mpt) != 0 ]]
2000	# then
2001	# export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/sgi/mpt/2011-02-07/lib:\$LD_LIBRARY_PATH;"
2002	# echo "*** module_calls = $module_calls"
2003	# fi
2004	fi
2005
2006
2007	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
2008	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2009	then
2010	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
2011	then
2012	mpilib=mpt
2013	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
2014	then
2015	mpilib=mvapich
2016	elif [[ $(echo $modules \| grep -c impi ) != 0 ]]
2017	then
2018	mpilib=impi
2019	fi
2020	fi
2021
2022
2023
2024	###########################################################################
2025	# HEADER-AUSGABE
2026	###########################################################################
2027
2028
2029	calltime=$(date)
2030	printf "\n"
2031	# [[ $silent = false ]] && clear
2032	printf "#------------------------------------------------------------------------# \n"
2033	printf "\| %-35s%35s \| \n" "$version" "$calltime"
2034	printf "\| \| \n"
2035	spalte1="called on:"; spalte2=$localhost_realname
2036	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2037	if [[ $local_compile = false ]]
2038	then
2039	if [[ $do_remote = true ]]
2040	then
2041	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2042	else
2043	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2044	fi
2045	else
2046	spalte1="compiling test only!"; spalte2=""
2047	fi
2048	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2049	if [[ -n $numprocs ]]
2050	then
2051	if [[ $run_coupled_model = false ]]
2052	then
2053	spalte1="number of PEs:"; spalte2=$numprocs
2054	else
2055	spalte1="number of PEs:"; spalte2="$numprocs (atmosphere: $numprocs_atmos, ocean: $numprocs_ocean)"
2056	fi
2057	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2058	fi
2059	if [[ -n $tasks_per_node ]]
2060	then
2061	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2062	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2063	fi
2064	if [[ $maximum_parallel_io_streams != $numprocs ]]
2065	then
2066	spalte1="max par io streams:"; spalte2="$maximum_parallel_io_streams"
2067	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2068	fi
2069	if [[ $use_openmp = true ]]
2070	then
2071	spalte1="threads per task:"; spalte2="$threads_per_task"
2072	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2073	fi
2074	printf "\| \| \n"
2075	if [[ $do_compile = true ]]
2076	then
2077	if [[ "$mopts" != "" ]]
2078	then
2079	spalte1="make options:"; spalte2=$(echo "$mopts" \| cut -c-45)
2080	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2081	zeile=$(echo "$mopts" \| cut -c46-)
2082	while [[ "$zeile" != "" ]]
2083	do
2084	spalte1=""
2085	spalte2=$(echo "$zeile" \| cut -c-45)
2086	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2087	zeile=$(echo "$zeile" \| cut -c46-)
2088	done
2089	fi
2090
2091	spalte1="cpp directives:"; spalte2=$(echo "$cpp_options" \| cut -c-45)
2092	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2093	zeile=$(echo "$cpp_options" \| cut -c46-)
2094	while [[ "$zeile" != "" ]]
2095	do
2096	spalte1=""
2097	spalte2=$(echo "$zeile" \| cut -c-45)
2098	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2099	zeile=$(echo "$zeile" \| cut -c46-)
2100	done
2101
2102	spalte1="compiler options:"; spalte2=$(echo "$fopts" \| cut -c-45)
2103	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2104	zeile=$(echo "$fopts" \| cut -c46-)
2105	while [[ "$zeile" != "" ]]
2106	do
2107	spalte1=""
2108	spalte2=$(echo "$zeile" \| cut -c-45)
2109	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2110	zeile=$(echo "$zeile" \| cut -c46-)
2111	done
2112
2113	spalte1="linker options:"; spalte2=$(echo "$lopts" \| cut -c-45)
2114	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2115	zeile=$(echo "$lopts" \| cut -c46-)
2116	while [[ "$zeile" != "" ]]
2117	do
2118	spalte1=""
2119	spalte2=$(echo "$zeile" \| cut -c-45)
2120	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2121	zeile=$(echo "$zeile" \| cut -c46-)
2122	done
2123
2124	spalte1="modules to be load:"; spalte2=$(echo "$modules" \| cut -c-45)
2125	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2126	zeile=$(echo "$modules" \| cut -c46-)
2127	while [[ "$zeile" != "" ]]
2128	do
2129	spalte1=""
2130	spalte2=$(echo "$zeile" \| cut -c-45)
2131	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2132	zeile=$(echo "$zeile" \| cut -c46-)
2133	done
2134
2135	spalte1="main program:"; spalte2=$mainprog
2136	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2137	else
2138	spalte1=executable:; spalte2=$executable
2139	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2140	fi
2141	printf "\| \| \n"
2142	spalte1="base name of files:"; spalte2=$fname
2143	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2144	if [[ $fname != $afname ]]
2145	then
2146	spalte1="base name of input files:"; spalte2=$afname
2147	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2148	fi
2149	spalte1="INPUT control list:"; spalte2=$(echo $input_list)
2150	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2151	spalte1="OUTPUT control list:"; spalte2=$(echo $output_list)
2152	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2153
2154	if [[ "$ocean_file_appendix" = true ]]
2155	then
2156	printf "\| %-35s%-35s \| \n" "suffix \"_O\" is added to local files" " "
2157	fi
2158
2159	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2160	then
2161	spalte1="memory demand / PE":; spalte2="$memory MB"
2162	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2163	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2164	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2165	fi
2166
2167	if [[ $do_compile = true ]]
2168	then
2169	printf "\| \| \n"
2170	printf "\| Files to be compiled: \| \n"
2171	zeile=$source_list
2172	while [[ "$zeile" != "" ]]
2173	do
2174	linestart=$(echo $zeile \| cut -c-70)
2175	printf "\| %-70s \| \n" "$linestart"
2176	zeile=$(echo "$zeile" \| cut -c71-)
2177	done
2178	fi
2179	printf "#------------------------------------------------------------------------#"
2180
2181
2182
2183	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2184	if [[ $do_trace = true ]]
2185	then
2186	(( i = 0 ))
2187	while (( i < iin ))
2188	do
2189	(( i = i + 1 ))
2190	if (( i == 1 ))
2191	then
2192	printf "\n\n >>> INPUT-file assignments:\n"
2193	fi
2194	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2195	done
2196	(( i = 0 ))
2197	while (( i < iout ))
2198	do
2199	(( i = i + 1 ))
2200	if (( i == 1 ))
2201	then
2202	printf "\n\n >>> OUTPUT-file assignments:\n"
2203	fi
2204	printf "\n ${localout[$i]} : ${pathout[$i]}"
2205	done
2206	(( i = 0 ))
2207	while (( i < iic ))
2208	do
2209	(( i = i + 1 ))
2210	if (( i == 1 ))
2211	then
2212	printf "\n\n >>> INPUT-commands:\n"
2213	fi
2214	printf "\n ${in_command[$i]}"
2215	done
2216	(( i = 0 ))
2217	while (( i < ioc ))
2218	do
2219	(( i = i + 1 ))
2220	if (( i == 1 ))
2221	then
2222	printf "\n\n >>> OUTPUT-commands:\n"
2223	fi
2224	printf "\n ${out_command[$i]}"
2225	done
2226	fi
2227
2228
2229	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2230	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2231	then
2232	antwort=dummy
2233	printf "\n\n"
2234	printf " >>> everything o.k. (y/n) ? "
2235	while read antwort
2236	do
2237	if [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2238	then
2239	printf " >>> everything o.k. (y/n) ? "
2240	else
2241	break
2242	fi
2243	done
2244	if [[ $antwort = n \|\| $antwort = N ]]
2245	then
2246	locat=user_abort; (( iec = 0 )); exit
2247	fi
2248	if [[ $do_batch = true ]]
2249	then
2250	printf " >>> batch-job will be created and submitted"
2251	else
2252	if [[ $local_compile = false ]]
2253	then
2254	printf " >>> MRUN will now continue to execute on this machine"
2255	else
2256	printf " >>> a test compilation will now be carried out on this machine"
2257	fi
2258	fi
2259	fi
2260
2261
2262	# PERFORM PARAMETER FILE CHECK (COUPLED RUNS ARE NOT SUPPORTED YET)
2263	# DEFINE VARIABLES FOR FREQUENTLY USED DIRECTORIES
2264	check_depository="${working_directory}/trunk/UTIL"
2265	check_sources="${working_directory}/tmp_check_namelist_files"
2266	skip_check=false
2267
2268	# CHECK IF NAMELIST_FILE_CHECK HAS BEEN COMPILED SUCCESSFULLY
2269	if [[ ! -f $check_depository/check_namelist_files.tar ]]
2270	then
2271	skip_check=true
2272	reason="run on remote host or parameter file check has not been compiled."
2273	fi
2274	if [[ ! -f $PALM_BIN/check_namelist_files.x ]]
2275	then
2276	skip_check=true
2277	reason="parameter file check has not been compiled."
2278	fi
2279
2280	# CHECK FOR PARALLEL RUN; OTHERWISE SKIP CHECK
2281	if [[ "$cond1" != "parallel" && "$cond2" != "parallel" ]]
2282	then
2283	skip_check=true
2284	reason="serial run."
2285	fi
2286
2287	# ONLY PERFORM CHECK IF -z OPTION IS NOT SET, NO RESTART RUN IS CARRIED OUT
2288	# AND IF THE EXECUTION HOST IS THE LOCAL HOST
2289	# ATTENTION: THIS ROUTINE DOES NOT WORK IF THE COMPILER ON THE LOCAL HOST
2290	# DIFFERS FROM THE COMPILER ON THE REMOTE HOST
2291	if [[ $check_namelist_files == false ]]
2292	then
2293	skip_check=true
2294	reason="-z option set."
2295	fi
2296
2297	if [[ $fromhost != $localhost ]]
2298	then
2299	skip_check=true
2300	reason="submitting host is local host."
2301	fi
2302
2303	if [[ $run_coupled_model == true ]]
2304	then
2305	skip_check=true
2306	reason="coupled run."
2307	fi
2308
2309	if [[ $restart_run == true ]]
2310	then
2311	skip_check=true
2312	reason="restart run."
2313	fi
2314
2315	# SKIP CHECK IN CASE OF RESTART RUN: CHECK WHETHER THE LAST CHAR IS "f" IN PARIN
2316	(( last_char_int = `echo $filename_input \| wc -c` - 1 ))
2317	last_char=`echo $filename_input \| cut -c $last_char_int`
2318	if [[ "$last_char" == "f" ]]
2319	then
2320	skip_check=true
2321	reason="restart run."
2322	fi
2323
2324	if [[ $skip_check == false ]]
2325	then
2326	tmp_check=${working_directory}/tmp_check
2327
2328	# GET TOPOGRAPHY PARAMETER FILE SUFFIX (USUALLY "_P3DF"). THIS FILE MIGHT IS
2329	# NOT NECESSARILY REQUIRED
2330	line=""
2331	found=false
2332	grep "TOPOGRAPHY_DATA" $config_file > $tmp_check
2333	while read line1
2334	do
2335	line="$line1"
2336	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2337	then
2338	topo_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2339	found=true
2340	fi
2341	done < $tmp_check
2342
2343	if [[ $found = false ]]
2344	then
2345	printf "\n +++ no TOPOGRAPHY list entry found in the configuration file."
2346	fi
2347
2348	rm -rf ${working_directory}/tmp_check
2349
2350	# CHECK IF THE A P3DF FILE MUST BE CHECKED
2351	for item in $input_list
2352	do
2353	if [[ "$item" == "restart" ]]
2354	then
2355	check_restart=1
2356	else
2357	check_restart=0
2358	fi
2359	done
2360
2361	# ERROR IF NO PARAMETER FILE WAS FOUND, OTHERWISE PROCEED
2362	if [[ (! -f $filename_input) && ( "$filename_input" != "" ) ]]
2363	then
2364	printf "\n\n +++ ERROR: parameter file ($filename_input) not found."
2365	locat=check_namelist; exit
2366	fi
2367
2368	# CHECK IF THE RESTART PARAMETER FILE EXISTS (IF NECESSARY)
2369	if [[ $check_restart == 1 ]]
2370	then
2371
2372	filenamef="${filename_input}f"
2373	if [[ ! -f $filenamef ]]
2374	then
2375	printf "\n\n +++ WARNING: restart parameter file ($filenamef) is missing."
2376	check_restart=0
2377	answer=dummy
2378	printf "\n\n"
2379
2380	if [[ $silent == false ]]
2381	then
2382	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2383	do
2384	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2385	read answer
2386	done
2387	if [[ $answer = a \|\| $answer = A ]]
2388	then
2389	printf "\n +++ Aborting...."
2390	locat=normal; exit
2391	fi
2392	fi
2393	else
2394	check_restart=1
2395	fi
2396	fi
2397
2398	# CREATE TEMPORARY SOURCES_FOR_CHECK PATH
2399	mkdir $check_sources
2400	cd $check_sources
2401
2402
2403	# CHECK FOR USER CODE, OTHERWISE USE THE PRECOMPILED CHECK_NAMELIST_FILES.X
2404	if [[ -d $add_source_path ]]
2405	then
2406	printf "\n\n *** copying files from $check_depository"
2407	cp $check_depository/check_namelist_files.tar ./
2408
2409	printf "\n\n *** untar of makefile and source files in $check_sources"
2410	tar -xf check_namelist_files.tar > /dev/null 2>&1
2411
2412	printf "\n\n *** adding user code."
2413	cp $add_source_path/* ./
2414	touch check_namelist_files.f90
2415
2416	# GET COMPILER OPTIONS AND PERFORM MAKE
2417	printf "\n\n *** compiling code if necessary...\n"
2418
2419	# workaround for batch jobs on local machine (lcxe6)
2420	if [[ $do_batch == true && $do_remote == false ]]
2421	then
2422	eval $init_cmds
2423	fi
2424
2425	# GET CHECK OPTIONS
2426	line=""
2427	found=false
2428
2429	grep "$localhost" ${base_directory}/${config_file} \| grep "%cpp_options" > $tmp_check
2430
2431	while read line1
2432	do
2433
2434	if [[ $(echo $line1 \| cut -d" " -s -f3-) = "$localhost" ]]
2435	then
2436	line="$line1"
2437	fi
2438
2439	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2440	then
2441	# EVENTUELLE DOPPELPUNKTE AUS OPTIONSSTRING UND ALLE -D ENTFERNEN
2442	line="$line "
2443	copts_check=`echo $line \| cut -d" " -s -f2 \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g' \| sed 's/-D[^ ]* //g' \| sed 's/ -D.*//g'`
2444	found=true
2445	fi
2446
2447	done < $tmp_check
2448	copts_check="$copts_check -D__check -D__parallel"
2449
2450	make -f Makefile_check F90=$compiler_name_ser COPT="$copts_check"
2451
2452	# GET MAKE OUTPUT
2453	if [[ $? != 0 ]]
2454	then
2455	printf "\n +++ error during make."
2456	answer=dummy
2457	printf "\n\n"
2458	if [[ $silent == false ]]
2459	then
2460	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2461	do
2462	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2463	read answer
2464	done
2465	if [[ $answer = a \|\| $answer = A ]]
2466	then
2467	printf "\n +++ Aborting..."
2468	rm -rf $check_sources
2469	locat=normal; exit
2470	else
2471	skip_check=true
2472	fi
2473	else
2474	skip_check=true
2475	fi
2476	fi
2477	else
2478	cp $PALM_BIN/check_namelist_files.x ./
2479	fi
2480
2481	cp $filename_input ./PARIN
2482	if [[ $check_restart == 1 ]]
2483	then
2484	cp $filenamef ./PARINF
2485	fi
2486
2487	if [[ -f ${pathname}/${fname}${topo_suffix} && $skip_check == false ]]
2488	then
2489	printf "\n *** adding topography data"
2490	cp ${pathname}/${fname}${topo_suffix} ./TOPOGRAPHY_DATA
2491
2492	# IN CASE OF TOPOGRAPHY AND HIGH GRID POINT NUMBERS, THE STACK SIZE
2493	# MUST BE INCREASED. THIS IS DUE TO THE ARRAY nzb_local AND topo_height,
2494	# WHICH REQUIRE SUFFICIENT MEMORY
2495	ulimit -s unlimited
2496	fi
2497
2498	# CREATE ENVPAR FILE, WHICH IS NEEDED BY CHECK_NAMELIST_FILES.X
2499	cat > ENVPAR << %%END%%
2500	&envpar run_identifier = '$fname', host = '$host',
2501	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2502	maximum_parallel_io_streams = $maximum_parallel_io_streams,
2503	maximum_cpu_time_allowed = ${cpumax}.,
2504	revision = '$global_revision',
2505	local_dvrserver_running = $local_dvrserver_running /
2506
2507	%%END%%
2508
2509	# SAFETY CHECK: ONLY PROCEED IF THE PARAMETER CHECK PROGRAM WAS PROPERLY COMPILED
2510	if [[ ! -f check_namelist_files.x && $skip_check == false ]]
2511	then
2512	printf "\n +++ WARNING: check_namelist_files.x not found."
2513	answer=dummy
2514	printf "\n\n"
2515
2516	if [[ $silent == false ]]
2517	then
2518	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2519	do
2520	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2521	read answer
2522	done
2523	if [[ $answer = a \|\| $answer = A ]]
2524	then
2525	printf "\n +++ Aborting..."
2526	rm -rf $check_sources
2527	locat=normal; exit
2528	else
2529	printf "\n *** skipping parameter file check."
2530	fi
2531	fi
2532
2533	elif [[ $skip_check == false ]]
2534	then
2535	# STARTING THE PARAMETER FILE CHECK
2536	printf "\n\n *** starting parameter file check..."
2537
2538	# CHECKING THE P3D FILE
2539	printf "\n\n (1) checking $filename_input"
2540	echo "$numprocs 0 0" > VARIN
2541	errors=`./check_namelist_files.x < VARIN 2>&1`
2542
2543	check_error=false
2544	if [[ "$errors" == "" ]]
2545	then
2546	printf " --> o.k."
2547	else
2548	printf " --> failed."
2549	check_error=true
2550	printf "\n\n $errors"
2551	fi
2552
2553	# CHECKING THE PD3F FILE IF NECESSARY
2554	if [[ $check_restart == 1 && $check_error == false ]]
2555	then
2556	printf "\n\n (2) checking $filenamef"
2557
2558	# FIRST CHECK IF INITIALIZING_ACTIONS="READ_RESTART_DATA" IS SET
2559	# IN &INIPAR LIST
2560	found=false
2561	cat PARINF \| while read line
2562	do
2563	line=$(echo $line\|sed 's/ //g')
2564	if [[ $line == "&inipar" ]]
2565	then
2566	start_search=true
2567	fi
2568
2569	if [[ $start_search == true ]]
2570	then
2571	if [[ $line == "initializing_actions='read_restart_data'" ]]
2572	then
2573	found=true
2574	break
2575	fi
2576	fi
2577
2578	if [[ $line == "/" ]]
2579	then
2580	start_search=false
2581	fi
2582
2583	done
2584
2585	if [[ $found = false ]]
2586	then
2587	printf "\n\n +++ ERROR: initializing_actions = 'read_restart_data' not found"
2588	printf "\n in &inipar list in $fname$p3df_suffix."
2589	rm -rf $check_sources
2590	locat=check_namelist; exit
2591	fi
2592
2593	# READ max_user_pr FROM FILES
2594	if [[ -f parin_for_check ]]
2595	then
2596	read max_pr_user < parin_for_check
2597	else
2598	max_user_pr=0
2599	fi
2600
2601	echo "$numprocs 1 $max_pr_user" > VARIN
2602	errors=`./check_namelist_files.x < VARIN 2>&1`
2603
2604	if [[ "$errors" == "" ]]
2605	then
2606	printf " --> o.k."
2607	else
2608	printf " --> failed."
2609	check_error=true
2610	printf "\n\n $errors"
2611	fi
2612	fi
2613
2614	# REPORT ERRORS AND CONTINUE/EXIT
2615	if [[ $check_error == true ]]
2616	then
2617	printf "\n +++ errors found in the parameter file!\n"
2618	answer=dummy
2619	printf "\n\n"
2620
2621	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2622	do
2623	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2624	read answer
2625	done
2626
2627	if [[ $answer = a \|\| $answer = A ]]
2628	then
2629	printf "\n +++ Aborting..."
2630	rm -rf $check_sources
2631	locat=normal; exit
2632	fi
2633	else
2634	printf "\n\n *** parameter file(s) seem(s) to be o.k.\n"
2635	fi
2636	rm -rf $check_sources
2637	fi
2638	else
2639	printf "\n\n +++ skipping parameter file check due to following reason: $reason \n"
2640	fi
2641
2642	# DELETE TEMPORARY DIRECTORY AND FINISH NAMELIST FILE CHECK
2643	rm -rf $check_sources
2644	cd $working_directory
2645
2646
2647	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2648	# CHENDE AKTIONEN DURCHGEFUEHRT
2649	if [[ $do_batch = false ]]
2650	then
2651
2652
2653	# TEMPORAEREN KATALOG ERZEUGEN
2654	mkdir -p $TEMPDIR
2655	chmod go+rx $TEMPDIR
2656	tmpcreate=true
2657
2658	# set striping on lustre file system
2659	# if [[ $localhost = lcsgih ]]
2660	# then
2661	# lfs setstripe -s 8192k -c 16 $TEMPDIR
2662	# lfs getstripe $TEMPDIR
2663	# fi
2664
2665
2666	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2667	# TEMPORAERES VERZEICHNIS KOPIEREN
2668	if [[ $do_compile = true ]]
2669	then
2670
2671	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2672	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2673	if [[ $localhost = nech ]]
2674	then
2675	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2676	if mkdir -p $TEMPDIR_COMPILE
2677	then
2678	printf "\n *** \"$TEMPDIR_COMPILE\" "
2679	printf "\n is generated as temporary directory for cross compiling\n"
2680	else
2681	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2682	printf "\n needed for cross compilation failed"
2683	locat=compile
2684	exit
2685	fi
2686	else
2687	TEMPDIR_COMPILE=$TEMPDIR
2688	fi
2689
2690
2691	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2692	line=""
2693	grep "%depository_path" $config_file > tmp_mrun
2694	while read line
2695	do
2696	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2697	then
2698	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2699	then
2700	global_depository_path=`echo $line \| cut -d" " -s -f2`
2701	fi
2702	fi
2703	done < tmp_mrun
2704
2705	line=""
2706	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2707	while read line
2708	do
2709	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2710	then
2711	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2712	then
2713	local_depository_path=`echo $line \| cut -d" " -s -f2`
2714	fi
2715	fi
2716	done < tmp_mrun
2717
2718	if [[ "$local_depository_path" = "" ]]
2719	then
2720	if [[ "$global_depository_path" != "" ]]
2721	then
2722	local_depository_path=$global_depository_path
2723	else
2724	printf "\n\n +++ no depository path found in configuration file"
2725	printf "\n for local host \"$localhost\" "
2726	printf "\n please set \"\%depository_path\" in configuration file\n"
2727	locat=config_file; exit
2728	fi
2729	fi
2730	eval local_depository_path=$local_depository_path
2731	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2732	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2733
2734
2735	basename=`echo $mainprog \| cut -f1 -d"."`
2736	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2737	if [[ ! -f $make_depository ]]
2738	then
2739	printf "\n"
2740	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2741	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2742	else
2743	cp $make_depository $TEMPDIR_COMPILE
2744	cd $TEMPDIR_COMPILE
2745	tar -xf $make_depository > /dev/null 2>&1
2746	cd - > /dev/null
2747	fi
2748
2749	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2750
2751	else
2752
2753	cp $executable ${TEMPDIR}/a.out
2754
2755	fi
2756
2757
2758	# WECHSEL IN TEMPORAEREN KATALOG
2759	cd $TEMPDIR
2760	printf "\n *** changed to temporary directory: $TEMPDIR"
2761
2762
2763	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2764	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2765	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2766	# ERMITTELN
2767	(( i = 0 ))
2768	while (( i < iout ))
2769	do
2770	(( i = i + 1 ))
2771	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2772	then
2773	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2774	else
2775	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2776	fi
2777	done
2778
2779
2780	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2781	if [[ $do_compile = true ]]
2782	then
2783
2784
2785	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2786	printf "\n\n\n *** compilation starts \n$striche\n"
2787	printf " *** compilation with make using following options:\n"
2788	printf " make depository: $make_depository"
2789	if [[ "$mopts" != "" ]]
2790	then
2791	printf " make options: $mopts\n"
2792	fi
2793	printf " compilername: $compiler_name\n"
2794	printf " compiler options: $fopts\n"
2795	printf " preprocessor directives: $cpp_options \n"
2796	printf " linker options: $lopts \n"
2797	if [[ "$modules" != "" ]]
2798	then
2799	printf " modules to be load: $modules \n"
2800	fi
2801	printf " source code files: $source_list \n"
2802
2803	if [[ $localhost = nech ]]
2804	then
2805	# init_cmds was ". /SX/opt/etc/initsx.sh;"
2806	ssh $SSH_PORTOPT 136.172.44.192 -l $usern "$init_cmds $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2807	cp $TEMPDIR_COMPILE/a.out .
2808	[[ $? != 0 ]] && compile_error=true
2809	rm -rf $TEMPDIR_COMPILE
2810	elif [[ $localhost = ibmh ]]
2811	then
2812	printf " compiler is called via ssh on \"plogin1\" \n"
2813	ssh $SSH_PORTOPT plogin1 -l $usern "$init_cmds export PATH=/sw/ibm/xlf/13.1.0.8/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2814	[[ ! -f a.out ]] && compile_error=true
2815	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2816	elif [[ $localhost = lcsgib ]]
2817	then
2818	printf " compiler is called via ssh on \"bicegate0\" \n"
2819	ssh $SSH_PORTOPT bicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2820	[[ ! -f a.out ]] && compile_error=true
2821	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2822	elif [[ $localhost = lcsgih ]]
2823	then
2824	printf " compiler is called via ssh on \"hicegate0\" \n"
2825	ssh $SSH_PORTOPT hicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2826	[[ ! -f a.out ]] && compile_error=true
2827	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2828	elif [[ $localhost = lcflow ]]
2829	then
2830	printf " compiler is called via ssh on \"flow\" \n"
2831	ssh $SSH_PORTOPT flow02.hpc.uni-oldenburg.de -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2832	[[ ! -f a.out ]] && compile_error=true
2833	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2834	else
2835	[[ "$init_cmds" != "" ]] && eval $init_cmds
2836	[[ "$module_calls" != "" ]] && eval $module_calls
2837	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2838
2839	fi
2840
2841	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2842	then
2843	printf "\n +++ error occured while compiling or linking"
2844	locat=compile
2845
2846	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
2847	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
2848	# then
2849	exit
2850	# else
2851	# locat=normal
2852	# fi
2853	else
2854	printf "$striche\n *** compilation finished \n"
2855	fi
2856	fi
2857
2858
2859	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2860	if [[ $local_compile = true ]]
2861	then
2862	cd $HOME
2863	rm -rf $TEMPDIR
2864	locat=local_compile; exit
2865	fi
2866
2867
2868	# BEREITSTELLEN DER INPUT-DATEIEN
2869	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2870	(( i = 0 ))
2871	while (( i < iin ))
2872	do
2873	(( i = i + 1 ))
2874	if (( i == 1 ))
2875	then
2876	printf "\n\n *** providing INPUT-files:\n$striche"
2877	fi
2878
2879
2880	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2881	if [[ "${transin[$i]}" = unavailable ]]
2882	then
2883	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2884	then
2885	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2886	printf "\n is not available!"
2887	else
2888	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2889	printf "\n is not available!"
2890	fi
2891	continue
2892	fi
2893
2894	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2895	files_for_pes=false; datentyp=file
2896	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2897	then
2898	files_for_pes=true; datentyp=directory
2899	actionin[$i]=""
2900	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2901	then
2902	actionin[$i]=""
2903	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2904	then
2905	files_for_pes=true; datentyp=directory
2906	actionin[$i]="ar"
2907	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2908	then
2909	actionin[$i]="ar"
2910	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2911	then
2912	files_for_pes=true; datentyp=directory
2913	actionin[$i]="fl"
2914	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2915	then
2916	actionin[$i]="fl"
2917	fi
2918
2919	if [[ $files_for_pes = true ]]
2920	then
2921	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
2922	else
2923	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
2924	fi
2925
2926	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
2927	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
2928	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
2929	# SERVER ZU HOLEN
2930	if [[ "${actionin[$i]}" = fl ]]
2931	then
2932	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
2933	if [[ $files_for_pes = false ]]
2934	then
2935	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
2936	then
2937	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
2938	got_tmp[$i]=true
2939	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2940	then
2941	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2942	printf "\n *** trying to use backup copy in \"$WORK\" "
2943	cp $WORK/${frelin[$i]} ${localin[$i]}
2944	else
2945	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2946	printf "\n or \"$tmp_data_catalog\" does not exist!"
2947	printf "\n *** trying to get copy from archive"
2948	actionin[$i]=ar
2949	fi
2950	else
2951	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
2952	then
2953	mkdir ${localin[$i]}
2954	cd $tmp_data_catalog/${frelin[$i]}
2955	for file in $(ls *)
2956	do
2957	ln $file $TEMPDIR/${localin[$i]}
2958	done
2959	cd $TEMPDIR
2960	got_tmp[$i]=true
2961	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2962	then
2963	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2964	printf "\n *** trying to use backup copy in \"$WORK\" "
2965	cp -r $WORK/${frelin[$i]} ${localin[$i]}
2966	else
2967	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2968	printf "\n or \"$tmp_data_catalog\" does not exist!"
2969	printf "\n *** trying to get copy from archive"
2970	actionin[$i]=ar
2971	fi
2972	fi
2973	fi
2974
2975
2976	# DATEI LIEGT AUF ARCHIV-SERVER
2977	if [[ "${actionin[$i]}" = ar ]]
2978	then
2979
2980	if [[ $files_for_pes = false ]]
2981	then
2982	printf "\n file will be restored from archive-system ($archive_system)!"
2983	else
2984	printf "\n directory will be restored from archive-system ($archive_system)!"
2985	fi
2986
2987	file_restored=false
2988
2989	if [[ $archive_system = asterix ]]
2990	then
2991	do_stagein=true
2992	(( stagein_anz = 0 ))
2993	while [[ $do_stagein = true ]]
2994	do
2995	if [[ $files_for_pes = false ]]
2996	then
2997	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
2998	else
2999	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
3000	fi
3001	cat STAGEIN_OUTPUT
3002	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
3003	then
3004	file_restored=true
3005	do_stagein=false
3006	else
3007	(( stagein_anz = stagein_anz + 1 ))
3008	if (( stagein_anz == 10 ))
3009	then
3010	printf "\n +++ stagein stoped after 10 tries"
3011	locat=stage
3012	exit
3013	fi
3014	printf "\n +++ restoring from archive failed, trying again:"
3015	sleep 900
3016	fi
3017	done
3018	elif [[ $archive_system = DMF ]]
3019	then
3020	if [[ $files_for_pes = false ]]
3021	then
3022	printf "\n +++ restoring of single files impossible with $archive_system !\n"
3023	locat=DMF
3024	exit
3025	else
3026	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
3027	cp -r $ARCHIVE/${frelin[$i]} $PWD
3028	file_restored=true
3029	fi
3030	elif [[ $archive_system = tivoli ]]
3031	then
3032	if [[ $files_for_pes = false ]]
3033	then
3034	if [[ $localhost = lcsgih ]]
3035	then
3036	ssh $SSH_PORTOPT $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3037	else
3038	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3039	fi
3040	else
3041	(( inode = 0 ))
3042	while (( inode < nodes ))
3043	do
3044	if [[ $localhost = lcsgih ]]
3045	then
3046	ssh $SSH_PORTOPT $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3047	else
3048	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3049	fi
3050	(( inode = inode + 1 ))
3051	done
3052	fi
3053	file_restored=true
3054	elif [[ $archive_system = ut ]]
3055	then
3056	if [[ $files_for_pes = false ]]
3057	then
3058	cp $UT/${frelin[$i]} .
3059	else
3060	(( inode = 0 ))
3061	while (( inode < nodes ))
3062	do
3063	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
3064	(( inode = inode + 1 ))
3065	done
3066	fi
3067	file_restored=true
3068	else
3069	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
3070	locat=rearchive
3071	exit
3072	fi
3073
3074	if [[ $file_restored = true ]]
3075	then
3076
3077	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
3078	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
3079	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
3080	if [[ $files_for_pes = false ]]
3081	then
3082	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
3083	else
3084	mkdir $tmp_data_catalog/${frelin[$i]}
3085	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
3086	fi
3087	got_tmp[$i]=true
3088
3089	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
3090	mv ${frelin[$i]} ${localin[$i]}
3091
3092	fi
3093	fi
3094
3095
3096	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
3097	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
3098	then
3099
3100	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
3101	then
3102
3103	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
3104	printf "\n file will be provided for $numprocs processors"
3105	mkdir ${localin[$i]}
3106	ival=$numprocs
3107	(( ii = 0 ))
3108	while (( ii <= ival-1 ))
3109	do
3110	if (( ii < 10 ))
3111	then
3112	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
3113	elif (( ii < 100 ))
3114	then
3115	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
3116	elif (( ii < 1000 ))
3117	then
3118	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
3119	else
3120	cp ${absnamein[$i]} ${localin[$i]}/_$ii
3121	fi
3122	(( ii = ii + 1 ))
3123	done
3124
3125	else
3126
3127	if [[ $files_for_pes = true ]]
3128	then
3129
3130	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
3131	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
3132	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
3133	# PER MOVE UMBENANNT WERDEN
3134	printf "\n providing $numprocs files for the respective processors"
3135	mkdir ${localin[$i]}
3136	if [[ $link_local_input = true ]]
3137	then
3138	printf " using ln -f\n"
3139	cd ${absnamein[$i]}
3140	for file in $(ls *)
3141	do
3142	ln -f $file ${localin[$i]}
3143	done
3144	cd $TEMPDIR
3145	fi
3146	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
3147	if [[ ! -f "${localin[$i]}/_0000" ]]
3148	then
3149	if [[ $link_local_input = true ]]
3150	then
3151	printf " ln failed for .../_0000, using cp...\n"
3152	fi
3153	cp -r ${absnamein[$i]}/* ${localin[$i]}
3154	fi
3155
3156	else
3157	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
3158	if [[ $link_local_input = true ]]
3159	then
3160	printf " using ln -f\n"
3161	ln -f ${absnamein[$i]} ${localin[$i]}
3162	fi
3163	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
3164	if [[ ! -f "${localin[$i]}" ]]
3165	then
3166	if [[ $link_local_input = true ]]
3167	then
3168	printf " ln failed, using cp...\n"
3169	fi
3170	cp ${absnamein[$i]} ${localin[$i]}
3171	fi
3172	fi
3173	fi
3174	fi
3175
3176	done
3177	if (( i != 0 ))
3178	then
3179	printf "\n$striche\n *** all INPUT-files provided \n"
3180	fi
3181
3182
3183	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
3184	(( i = 0 ))
3185	while (( i < iic ))
3186	do
3187	(( i = i + 1 ))
3188	if (( i == 1 ))
3189	then
3190	printf "\n\n *** execution of INPUT-commands:\n$striche"
3191	fi
3192	printf "\n >>> ${in_command[$i]}"
3193	eval ${in_command[$i]}
3194	if (( i == iic ))
3195	then
3196	printf "\n$striche\n"
3197	fi
3198	done
3199
3200
3201	# VERBLEIBENDE CPU-ZEIT BERECHNEN
3202	cpurest=${cpumax}.
3203
3204
3205	# START DVR STREAMING SERVER
3206	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3207	then
3208	if [[ "$dvr_server" != "" ]]
3209	then
3210
3211	printf "\n\n *** preparing the dvr streaming server configuration file"
3212
3213	# Check, if a dvr server is already running
3214	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
3215	if [[ "$running_dvrserver_id" != "" ]]
3216	then
3217
3218	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
3219	printf "\n This server is used instead starting a new one!"
3220	printf "\n If required, script \"process_dvr_output\" has to be run manually."
3221
3222	else
3223
3224	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
3225	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
3226	then
3227	cp ${PALM_BIN}/.dvrserver.config .
3228
3229	# Entering the BASEDIR, UID and GID into this file
3230	user_id=`id -u`
3231	group_id=`id -g`
3232	# & is needed as seperator, because TEMPDIR contains /
3233	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
3234	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
3235	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
3236	mv .dvrserver.3 .dvrserver.config
3237	rm .dvrserver.1 .dvrserver.2
3238
3239	# Start dvr server in background, get his id and print on terminal
3240	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
3241	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
3242	printf "\n *** streaming server with id=$dvrserver_id is started in background"
3243	local_dvrserver_running=.TRUE.
3244	else
3245	printf "\n +++ missing file \".dvrserver.config\" in directory:"
3246	printf "\n \"$PALM_BIN\" "
3247	locat=dvr
3248	exit
3249	fi
3250
3251	fi
3252
3253	else
3254	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
3255	fi
3256	fi
3257
3258
3259	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
3260	# LESEN VON PALM)
3261	cat > ENVPAR << %%END%%
3262	&envpar run_identifier = '$fname', host = '$localhost',
3263	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
3264	maximum_parallel_io_streams = $maximum_parallel_io_streams,
3265	maximum_cpu_time_allowed = ${cpumax}.,
3266	revision = '$global_revision',
3267	local_dvrserver_running = $local_dvrserver_running /
3268
3269	%%END%%
3270
3271
3272	# PROGRAMMSTART
3273	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
3274	PATH=$PATH:$TEMPDIR
3275
3276	# MPI debug option (argument checking, slows down execution due to increased latency)
3277	if [[ "$mpi_debug" = true ]]
3278	then
3279	export MPI_CHECK_ARGS=1
3280	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
3281	fi
3282
3283	if [[ "$totalview" = true ]]
3284	then
3285	printf "\n *** totalview debugger will be used"
3286	tv_opt="-tv"
3287	else
3288	tv_opt=""
3289	fi
3290
3291	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
3292	then
3293	if [[ "$ENVIRONMENT" = BATCH ]]
3294	then
3295	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
3296	then
3297	printf "\n +++ debug is allowed in interactive mode only"
3298	locat=debug
3299	exit
3300	fi
3301	fi
3302	if [[ $localhost = ibmh ]]
3303	then
3304
3305	# SETUP THE IBM MPI ENVIRONMENT
3306	export MP_SHARED_MEMORY=yes
3307	export AIXTHREADS_SCOPE=S
3308	export OMP_NUM_THREADS=$threads_per_task
3309	export AUTHSTATE=files
3310	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3311
3312	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
3313	export MP_ADAPTER_USE=shared
3314	export MP_CPU_USE=multiple
3315	export MP_TIMEOUT=1200
3316
3317	unset MP_TASK_AFFINITY
3318
3319	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
3320	#(( ii = 1 ))
3321	#while (( ii <= $numprocs ))
3322	#do
3323	# echo $localhost_realname >> hostfile
3324	# (( ii = ii + 1 ))
3325	#done
3326	#export MP_HOSTFILE=hostfile
3327
3328	if [[ "$LOADLBATCH" = yes ]]
3329	then
3330	totalview poe a.out $ROPTS
3331	else
3332	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3333	export TVDSVRLAUNCHCMD=ssh
3334	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3335	fi
3336	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
3337	then
3338	# CURRENTLY NO DEBUGGER ON LCSGI
3339	if [[ $run_coupled_model = true ]]
3340	then
3341	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
3342	locat=debug
3343	exit
3344	else
3345	echo "no_coupling" > runfile_atmos
3346	fi
3347	(( ii = $numprocs / $threads_per_task ))
3348	export OMP_NUM_THREADS=$threads_per_task
3349	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3350	if [[ $threads_per_task != 1 ]]
3351	then
3352	printf "\n threads per task: $threads_per_task"
3353	fi
3354	printf "\n\n"
3355	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3356	then
3357	# export MPI_LAUNCH_TIMEOUT=360
3358	if [[ "$totalview" = true ]]
3359	then
3360	printf "\n running totalview debugger"
3361	mpiexec_mpt $tv_opt -n $ii ./a.out $ROPTS < runfile_atmos
3362	else
3363	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3364	fi
3365	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3366	then
3367	# ulimit -s 300000 # A too large stack size causes problems
3368	# export MV2_NUM_PORTS=2
3369	# export MV2_CPU_MAPPING=0:1:2:3
3370	if [[ "$totalview" = true ]]
3371	then
3372	printf "\n running totalview debugger"
3373	mpiexec $tv_opt ./a.out $ROPTS < runfile_atmos
3374	else
3375	mpiexec ./a.out $ROPTS < runfile_atmos
3376	fi
3377	fi
3378	else
3379	printf "\n +++ no debug available on \"$localhost\" "
3380	printf "\n or not implemented in mrun so far"
3381	locat=debug
3382	exit
3383	fi
3384
3385	# end debug mode
3386	else
3387
3388	# normal execution
3389	if [[ -n $numprocs ]]
3390	then
3391	# RUNNING THE PROGRAM ON PARALLEL MACHINES
3392	if [[ $(echo $host \| cut -c1-3) = ibm ]]
3393	then
3394	# SETUP THE IBM MPI ENVIRONMENT
3395	if [[ $host != ibmh && $host != ibmkisti ]]
3396	then
3397	export MP_SHARED_MEMORY=yes
3398	export AIXTHREAD_SCOPE=S
3399	export OMP_NUM_THREADS=$threads_per_task
3400	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
3401	export AUTHSTATE=files
3402	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3403	# export MP_PRINTENV=yes
3404
3405	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3406	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3407	export MP_WAIT_MODE=poll
3408	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3409	fi
3410
3411	if [[ $host = ibmkisti ]]
3412	then
3413	export LANG=en_US
3414	export MP_SHARED_MEMORY=yes
3415	if [[ $threads_per_task = 1 ]]
3416	then
3417	export MP_SINGLE_THREAD=yes
3418	export MEMORY_AFFINITY=MCM
3419	else
3420	export OMP_NUM_THREADS=$threads_per_task
3421	fi
3422	fi
3423
3424	if [[ "$LOADLBATCH" = yes ]]
3425	then
3426	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3427	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3428	then
3429	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3430	else
3431	if [[ $run_coupled_model = false ]]
3432	then
3433	if [[ "$ocean_file_appendix" = true ]]
3434	then
3435	echo "precursor_ocean" > runfile_atmos
3436	else
3437	echo "precursor_atmos" > runfile_atmos
3438	fi
3439	else
3440	(( iia = $numprocs_atmos / $threads_per_task ))
3441	(( iio = $numprocs_ocean / $threads_per_task ))
3442	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3443	printf "\n using $coupled_mode coupling"
3444	printf "\n\n"
3445	echo "coupled_run $iia $iio" > runfile_atmos
3446	fi
3447	poe ./a.out $ROPTS < runfile_atmos
3448	fi
3449	else
3450	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
3451	then
3452	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3453	elif [[ $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibmy ]]
3454	then
3455	if [[ -f $hostfile ]]
3456	then
3457	cp $hostfile hostfile
3458	else
3459	(( ii = 1 ))
3460	while (( ii <= $numprocs ))
3461	do
3462	echo $localhost_realname >> hostfile
3463	(( ii = ii + 1 ))
3464	done
3465	fi
3466	export MP_HOSTFILE=hostfile
3467	if [[ $run_coupled_model = false ]]
3468	then
3469	if [[ "$ocean_file_appendix" = true ]]
3470	then
3471	echo "precursor_ocean" > runfile_atmos
3472	else
3473	echo "precursor_atmos" > runfile_atmos
3474	fi
3475	else
3476	(( iia = $numprocs_atmos / $threads_per_task ))
3477	(( iio = $numprocs_ocean / $threads_per_task ))
3478	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3479	printf "\n using $coupled_mode coupling"
3480	printf "\n\n"
3481	echo "coupled_run $iia $iio" > runfile_atmos
3482	fi
3483	if [[ $localhost = ibmy ]]
3484	then
3485	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3486	else
3487	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
3488	fi
3489
3490	else
3491	if [[ "$host_file" = "" ]]
3492	then
3493	printf "\n +++ no hostfile given in configuration file"
3494	locat=config_file
3495	exit
3496	else
3497	eval host_file=$host_file
3498	fi
3499	export MP_HOSTFILE=$host_file
3500	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3501	fi
3502	fi
3503	elif [[ $host = nech \|\| $host = necriam ]]
3504	then
3505	(( ii = nodes ))
3506	if [[ $ii = 1 ]]
3507	then
3508	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3509	export MPIPROGINF=YES
3510	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3511	echo "*** execution on single node with mpirun"
3512	mpirun -np $numprocs ./a.out $ROPTS
3513	else
3514	(( i = 0 ))
3515	while (( i < ii ))
3516	do
3517	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3518	(( i = i + 1 ))
3519	done
3520
3521	echo "#!/bin/sh" > mpi_exec_shell
3522	echo " " >> mpi_exec_shell
3523	echo "set -u" >> mpi_exec_shell
3524	echo "F_ERRCNT=0" >> mpi_exec_shell
3525	echo "MPIPROGINV=YES" >> mpi_exec_shell
3526	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3527	echo "cpurest=$cpurest" >> mpi_exec_shell
3528	echo "fname=$fname" >> mpi_exec_shell
3529	echo "localhost=$localhost" >> mpi_exec_shell
3530	echo "return_addres=$return_addres" >> mpi_exec_shell
3531	echo "return_username=$return_username" >> mpi_exec_shell
3532	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3533	echo "write_binary=$write_binary" >> mpi_exec_shell
3534	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3535	echo " " >> mpi_exec_shell
3536	echo "export F_ERRCNT" >> mpi_exec_shell
3537	echo "export MPIPROGINV" >> mpi_exec_shell
3538	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3539	echo "export cpurest" >> mpi_exec_shell
3540	echo "export fname" >> mpi_exec_shell
3541	echo "export localhost" >> mpi_exec_shell
3542	echo "export return_addres" >> mpi_exec_shell
3543	echo "export return_username" >> mpi_exec_shell
3544	echo "export tasks_per_node" >> mpi_exec_shell
3545	echo "export write_binary" >> mpi_exec_shell
3546	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3547	echo " " >> mpi_exec_shell
3548	echo "exec ./a.out" >> mpi_exec_shell
3549
3550	chmod u+x mpi_exec_shell
3551	export MPIPROGINF=YES
3552	mpirun -f multinode_config &
3553	wait
3554
3555	fi
3556	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
3557	then
3558
3559	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3560	# DOES NOT EXIST
3561	if [[ $host != lcsgih && $host != lcsgib && $host != lckyuh && $host != lckyut ]]
3562	then
3563	if [[ -f $hostfile ]]
3564	then
3565	cp $hostfile hostfile
3566	(( ii = $numprocs / $threads_per_task ))
3567	else
3568	(( ii = 1 ))
3569	while (( ii <= $numprocs / $threads_per_task ))
3570	do
3571	echo $localhost_realname >> hostfile
3572	(( ii = ii + 1 ))
3573	done
3574	fi
3575	eval zeile=\"`head -n $ii hostfile`\"
3576	printf "\n *** running on: $zeile"
3577	fi
3578
3579	(( ii = $numprocs / $threads_per_task ))
3580	export OMP_NUM_THREADS=$threads_per_task
3581	# echo "*** OMP_NUM_THREADS=$OMP_NUM_THREADS"
3582	if [[ $threads_per_task != 1 ]]
3583	then
3584	# increase stack size to unlimited, because large runs
3585	# may abort otherwise
3586	ulimit -Ss unlimited
3587	printf "\n threads per task: $threads_per_task stacksize: unlimited"
3588	fi
3589	if [[ $run_coupled_model = false ]]
3590	then
3591	if [[ "$ocean_file_appendix" = true ]]
3592	then
3593	echo "precursor_ocean" > runfile_atmos
3594	else
3595	echo "precursor_atmos" > runfile_atmos
3596	fi
3597	printf "\n\n"
3598	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3599	then
3600	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3601	then
3602	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3603	# export MPI_DSM_DISTRIBUTE=1
3604	# MPI_DSM_CPULIST: pin MPI processes to cores
3605	if [[ $use_openmp = false ]]
3606	then
3607	if [[ "$sgi_feature" = ice2 ]]
3608	then
3609	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
3610	else
3611	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3612	fi
3613	else
3614	unset MPI_DSM_CPULIST
3615	fi
3616	# MPI_IB_RAILS: use both IB rails on ICE2
3617	export MPI_BUFS_PER_HOST=512
3618	export MPI_IB_RAILS=2
3619	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3620	export MPI_CONNECTIONS_THRESHOLD=8192
3621	# echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
3622	export MPI_TYPE_DEPTH=20
3623	# echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
3624	export MPI_GROUP_MAX=64
3625	# echo "*** MPI_GROUP_MAX=$MPI_GROUP_MAX"
3626	if [[ $use_openmp = true ]]
3627	then
3628	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3629	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3630	else
3631	mpiexec_mpt -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3632	fi
3633
3634	# next is test for openmp usage
3635	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3636	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
3637	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3638	then
3639	export MV2_NUM_PORTS=2
3640	# The default setting of MV2_CPU_MAPPING gives best results
3641	# export MV2_ENABLE_AFFINITY=1
3642	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3643	# if [[ "$sgi_feature" = ice2 ]]
3644	# then
3645	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
3646	# else
3647	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3648	# fi
3649	if [[ $use_openmp = true ]]
3650	then
3651	unset MV2_CPU_MAPPING
3652	export MV2_ENABLE_AFFINITY=0
3653	fi
3654	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
3655	echo "*** MV2_ENABLE_AFFINITY=$MV2_ENABLE_AFFINITY"
3656	if [[ $use_openmp = true ]]
3657	then
3658	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3659	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3660	else
3661	mpiexec -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3662	fi
3663	elif [[ "$mpilib" = impi ]]
3664	then
3665	echo "mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos"
3666	mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos
3667	fi
3668	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3669	then
3670	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3671	elif [[ $host = lcflow ]]
3672	then
3673	mpiexec -machinefile $TMPDIR/machines -n $ii -env I_MPI_FABRICS shm:ofa a.out < runfile_atmos $ROPTS
3674	elif [[ $host = lcsb ]]
3675	then
3676	mpirun_rsh -hostfile $PBS_NODEFILE -np `cat $PBS_NODEFILE \| wc -l` a.out < runfile_atmos $ROPTS
3677	elif [[ $host = lckiaps ]]
3678	then
3679	mpirun -np $ii -f $PBS_NODEFILE a.out < runfile_atmos $ROPTS
3680	elif [[ $host = lckyu* ]]
3681	then
3682	mpiexec -n $ii --stdin runfile_atmos ./a.out $ROPTS
3683	else
3684	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3685	fi
3686	else
3687
3688	# currently there is no full MPI-2 support on ICE and XT4
3689	(( iia = $numprocs_atmos / $threads_per_task ))
3690	(( iio = $numprocs_ocean / $threads_per_task ))
3691	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3692	printf "\n using $coupled_mode coupling"
3693	printf "\n\n"
3694
3695	if [[ $coupled_mode = "mpi2" ]]
3696	then
3697	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3698	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3699	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3700	then
3701
3702	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3703	then
3704	# export MPI_LAUNCH_TIMEOUT=360
3705	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3706	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3707	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3708	then
3709	# ulimit -s 300000 # A too large stack size causes problems
3710	# export MV2_NUM_PORTS=2
3711	# export MV2_CPU_MAPPING=0:1:2:3
3712	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3713	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3714	fi
3715
3716	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3717	then
3718
3719	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3720	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3721
3722	else
3723	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3724	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3725	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3726	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3727	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3728	fi
3729	wait
3730
3731	else
3732
3733	echo "coupled_run $iia $iio" > runfile_atmos
3734	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3735	then
3736
3737	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3738	then
3739	# export MPI_LAUNCH_TIMEOUT=360
3740	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3741	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3742	then
3743	# ulimit -s 300000 # A too large stack size causes problems
3744	# export MV2_NUM_PORTS=2
3745	# export MV2_CPU_MAPPING=0:1:2:3
3746	mpiexec ./a.out $ROPTS < runfile_atmos
3747	fi
3748
3749	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3750	then
3751
3752	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3753
3754	elif [[ $host = lck \|\| $host = lckordi ]]
3755	then
3756
3757	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3758
3759	elif [[ $host = lckyu* ]]
3760	then
3761
3762	mpiexec -n $ii --stdin runfile_atmos ./a.out $ROPTS
3763
3764	fi
3765	wait
3766	fi
3767
3768	fi
3769	elif [[ $host = lckyoto ]]
3770	then
3771	set -xv
3772	export P4_RSHCOMMAND=plesh
3773	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
3774	if [[ "$ENVIRONMENT" = BATCH ]]
3775	then
3776	if [[ "$cond2" = fujitsu ]]
3777	then
3778	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
3779	elif [[ "cond2" = pgi ]]
3780	then
3781	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
3782	else
3783	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
3784	fi
3785	else
3786	if [[ "$cond2" = "" ]]
3787	then
3788	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
3789	else
3790	mpirun -np $numprocs ./a.out $ROPTS
3791	fi
3792	fi
3793	set +xv
3794	elif [[ $host = lctit ]]
3795	then
3796	export OMP_NUM_THREADS=$threads_per_task
3797	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3798	if [[ "$threads_per_task" != 1 ]]
3799	then
3800	export MV2_ENABLE_AFFINITY=0
3801	fi
3802	echo "----- PBS_NODEFILE content:"
3803	cat $PBS_NODEFILE
3804	echo "-----"
3805	(( ii = $numprocs / $threads_per_task ))
3806	echo "mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS"
3807	mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS
3808	else
3809	mpprun -n $numprocs a.out $ROPTS
3810	fi
3811	[[ $? != 0 ]] && execution_error=true
3812
3813
3814	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3815	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3816	then
3817	apprentice
3818	fi
3819	else
3820	a.out $ROPTS
3821	fi
3822	fi
3823	if [[ $? != 0 \|\| $execution_error = true ]]
3824	then
3825
3826	# ABBRUCH BEI LAUFZEITFEHLER
3827	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3828	printf "\n +++ runtime error occured"
3829	locat=execution
3830	exit
3831	else
3832	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3833	printf "\n$striche\n *** execution finished \n"
3834
3835	# Stop the dvr streaming server and process the dvr output in order
3836	# to create dvrs- and html-files containing all streams
3837	if [[ "$dvrserver_id" != "" ]]
3838	then
3839	kill $dvrserver_id
3840	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3841
3842	# If there is a directory, data have been output by the
3843	# streaming server. Otherwise, user has chosen dvrp_output=local
3844	if [[ -d DATA_DVR ]]
3845	then
3846
3847	# Add the current dvr configuration file to the dvr output
3848	# directory
3849	cp .dvrserver.config DATA_DVR
3850
3851	# Process the dvr output (option -s for also generating
3852	# sequence mode data)
3853	process_dvr_output -d DATA_DVR -f $fname -s
3854
3855	else
3856
3857	# Process the local output
3858	process_dvr_output -l -d DATA_DVR -f $fname
3859
3860	fi
3861
3862	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3863	then
3864
3865	# Process dvr output generated in local mode (dvrp_output=local)
3866	process_dvr_output -l -d DATA_DVR -f $fname
3867
3868	fi
3869	fi
3870
3871
3872
3873	# Call of combine_plot_fields in order to merge single files written
3874	# by each PE into one file.
3875	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
3876	then
3877	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
3878	printf "\n 2d- and/or 3d-data may be incomplete!"
3879	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
3880	elif [[ "$combine_plot_fields" == true ]]
3881	then
3882	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
3883	combine_plot_fields${block}.x
3884	else
3885	# Temporary solution to skip combine_plot_fields. This is necessary in case of huge amount of
3886	# data output. To do: extend this branch by creating a batch job for combine_plot_fields.
3887	printf "\n\n\n *** post-processing: skipping combine_plot_fields (-Z option set) ..."
3888	fi
3889
3890
3891
3892	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3893	(( i = 0 ))
3894	while (( i < ioc ))
3895	do
3896	(( i = i + 1 ))
3897	if (( i == 1 ))
3898	then
3899	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
3900	fi
3901	printf "\n >>> ${out_command[$i]}"
3902	eval ${out_command[$i]}
3903	if (( i == ioc ))
3904	then
3905	printf "\n$striche\n"
3906	fi
3907	done
3908
3909
3910	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
3911	if [[ $do_trace = true ]]
3912	then
3913	printf "\n\n"
3914	ls -al
3915	fi
3916
3917
3918
3919	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
3920	(( i = 0 ))
3921	while (( i < iout ))
3922	do
3923	(( i = i + 1 ))
3924	if (( i == 1 ))
3925	then
3926	printf "\n\n *** saving OUTPUT-files:\n$striche"
3927	fi
3928
3929	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3930	files_for_pes=false; filetyp=file
3931	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
3932	then
3933	files_for_pes=true; filetyp=directory
3934	actionout[$i]=""
3935	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
3936	then
3937	actionout[$i]=""
3938	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
3939	then
3940	files_for_pes=true; filetyp=directory
3941	actionout[$i]="ar"
3942	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
3943	then
3944	actionout[$i]="ar"
3945	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
3946	then
3947	files_for_pes=true; filetyp=directory
3948	actionout[$i]="fl"
3949	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
3950	then
3951	actionout[$i]="fl"
3952	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
3953	then
3954	files_for_pes=true; filetyp=directory
3955	actionout[$i]="tr"
3956	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
3957	then
3958	actionout[$i]="tr"
3959	fi
3960
3961	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
3962	then
3963	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
3964	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
3965	then
3966	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
3967	else
3968
3969
3970	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3971	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3972	# REMOTE-RECHNUNGEN
3973	if [[ "${actionout[$i]}" = tr ]]
3974	then
3975	if [[ $localhost != $fromhost ]]
3976	then
3977	if [[ $files_for_pes = false ]]
3978	then
3979	cps=""
3980	cst=""
3981	else
3982	cps=-c
3983	cst="/"
3984	fi
3985	if [[ $localhost = nech ]]
3986	then
3987
3988	# TRANSFER IN EIGENSTAENDIGEM JOB
3989	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3990	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3991	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3992	if [[ $files_for_pes = false ]]
3993	then
3994	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3995	else
3996	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
3997	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
3998	fi
3999
4000	echo "set -x" > transfer_${localout[$i]}
4001	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4002
4003	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
4004	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
4005	printf "\n or higher cycle\n"
4006	echo "batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4007
4008	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4009
4010	if [[ $localhost = nech ]]
4011	then
4012	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
4013	else
4014	if [[ "$LOGNAME" = b323013 ]]
4015	then
4016	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4017	else
4018	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4019	fi
4020	fi
4021
4022	else
4023
4024	# TRANSFER INNERHALB DIESES JOBS
4025	transfer_failed=false
4026	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
4027	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
4028	batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4029	[[ $? != 0 ]] && transfer_failed=true
4030
4031	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4032	# LOKALER MASCHINE ANLEGEN
4033	if [[ $transfer_failed = true ]]
4034	then
4035	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4036	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4037
4038	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4039	# ANLEGEN.
4040	eval local_catalog=${pathout[$i]}
4041	if [[ ! -d $local_catalog ]]
4042	then
4043	printf " *** local directory does not exist. Trying to create:\n"
4044	printf " $local_catalog \n"
4045	mkdir -p $local_catalog
4046	fi
4047	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4048	transfer_problems=true
4049	fi
4050	fi
4051	else
4052
4053	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
4054	actionout[$i]=""
4055	fi
4056	fi
4057
4058
4059	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
4060	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
4061	# REMOTE-RECHNUNGEN
4062	if [[ "${actionout[$i]}" = tra ]]
4063	then
4064	if [[ $localhost != $fromhost ]]
4065	then
4066	if [[ $localhost = ibmh \|\| $localhost = nech ]]
4067	then
4068
4069	# TRANSFER IN EIGENSTAENDIGEM JOB
4070	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4071	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4072	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4073	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4074
4075	echo "set -x" > transfer_${localout[$i]}
4076	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4077
4078	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
4079	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
4080	printf "\n or higher cycle\n"
4081	echo "batch_scp $PORTOPT -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4082
4083	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4084
4085	if [[ $localhost = nech ]]
4086	then
4087	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
4088	else
4089	if [[ $LOGNAME = b323013 ]]
4090	then
4091	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4092	else
4093	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4094	fi
4095	fi
4096
4097	else
4098
4099	# TRANSFER INNERHALB DIESES JOBS
4100	transfer_failed=false
4101	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
4102	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
4103	batch_scp $PORTOPT -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4104	[[ $? != 0 ]] && transfer_failed=true
4105
4106	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4107	# LOKALER MASCHINE ANLEGEN
4108	if [[ $transfer_failed = true ]]
4109	then
4110	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4111	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4112
4113	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4114	# ANLEGEN
4115	eval local_catalog=${pathout[$i]}
4116	if [[ ! -d $local_catalog ]]
4117	then
4118	printf " *** local directory does not exist. Trying to create:\n"
4119	printf " $local_catalog \n"
4120	mkdir -p $local_catalog
4121	fi
4122
4123	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4124	transfer_problems=true
4125	fi
4126	fi
4127	else
4128
4129	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
4130	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
4131	actionout[$i]=a
4132	fi
4133	fi
4134
4135
4136	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
4137	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
4138	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
4139	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
4140	if [[ "${actionout[$i]}" = fl ]]
4141	then
4142	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4143	chmod g+rx $tmp_data_catalog
4144	if [[ $files_for_pes = false ]]
4145	then
4146	printf "\n >>> OUTPUT: ${localout[$i]} to"
4147	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4148	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
4149	else
4150	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
4151	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4152	mkdir $tmp_data_catalog/${frelout[$i]}
4153	cd ${localout[$i]}
4154	for file in $(ls *)
4155	do
4156	ln -f $file $tmp_data_catalog/${frelout[$i]}
4157	done
4158	cd $TEMPDIR
4159	fi
4160
4161
4162	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
4163	if [[ $store_on_archive_system = true ]]
4164	then
4165
4166	if [[ $archive_system = asterix ]]
4167	then
4168	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4169	if [[ $files_for_pes = false ]]
4170	then
4171	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4172	else
4173	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4174	fi
4175	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4176	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
4177	echo "then" >> archive_${frelout[$i]}
4178	echo " do_stageout=false" >> archive_${frelout[$i]}
4179	echo "else" >> archive_${frelout[$i]}
4180	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
4181	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
4182	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
4183	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
4184	if [[ $files_for_pes = false ]]
4185	then
4186	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
4187	else
4188	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
4189	fi
4190	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
4191	echo "fi" >> archive_${frelout[$i]}
4192	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4193	elif [[ $archive_system = DMF ]]
4194	then
4195	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4196	if [[ $files_for_pes = false ]]
4197	then
4198	printf "\n +++ archiving of single files impossible with $archive_system !\n"
4199	locat=DMF
4200	exit
4201	else
4202	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
4203	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
4204	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
4205	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
4206	fi
4207	elif [[ $archive_system = tivoli ]]
4208	then
4209	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4210	if [[ $files_for_pes = false ]]
4211	then
4212	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4213	echo "set -x" >> archive_${frelout[$i]}
4214	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4215	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4216	else
4217
4218	echo "set -x" >> archive_${frelout[$i]}
4219	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
4220	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4221	cd $tmp_data_catalog
4222	all_files=`ls -1 ${frelout[$i]}/*`
4223	cd - > /dev/null
4224	(( inode = 0 ))
4225	(( tp1 = tasks_per_node + 1 ))
4226	while (( inode < nodes ))
4227	do
4228	# echo "*** all_files = \"$all_files\" "
4229	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4230	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4231	# echo "*** tasks_per_node = \"$tasks_per_node\" "
4232	# echo "*** files = \"$files\" "
4233	# echo "*** all_files = \"$all_files\" "
4234	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4235	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4236	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
4237	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4238	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4239	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4240	(( inode = inode + 1 ))
4241	done
4242	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4243	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4244	fi
4245	elif [[ $archive_system = ut ]]
4246	then
4247	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4248	if [[ $files_for_pes = false ]]
4249	then
4250	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4251	echo "set -x" >> archive_${frelout[$i]}
4252	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4253	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4254	else
4255
4256	echo "set -x" >> archive_${frelout[$i]}
4257	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
4258	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
4259	cd $tmp_data_catalog
4260	all_files=`ls -1 ${frelout[$i]}/*`
4261	cd - > /dev/null
4262	(( inode = 0 ))
4263	(( tp1 = tasks_per_node + 1 ))
4264	while (( inode < nodes ))
4265	do
4266	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4267	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4268	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4269	(( inode = inode + 1 ))
4270	done
4271	fi
4272	elif [[ $archive_system = none ]]
4273	then
4274	printf " +++ archiving on $localhost not available!\n"
4275	fi
4276
4277	if [[ $archive_system != none ]]
4278	then
4279	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
4280	then
4281	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4282	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4283	elif [[ $localhost = nech ]]
4284	then
4285	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
4286	fi
4287	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4288	fi
4289	else
4290	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
4291	fi
4292
4293
4294	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
4295	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4296	if [[ $files_for_pes = false ]]
4297	then
4298	cat /dev/null > ${pathout[$i]}
4299	else
4300	mkdir -p ${pathout[$i]}
4301	fi
4302
4303	fi
4304
4305
4306	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
4307	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
4308	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4309	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
4310	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
4311	# GEMAESSEN ARCHIVIERUNGEN GESETZT
4312	if [[ "${actionout[$i]}" = ar ]]
4313	then
4314	if [[ $files_for_pes = false ]]
4315	then
4316	printf "\n >>> OUTPUT: ${localout[$i]} to"
4317	printf "\n ${pathout[$i]}"
4318	printf "\n File will be copied to archive-system ($archive_system) !\n"
4319	else
4320	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
4321	printf "\n ${pathout[$i]}"
4322	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
4323	fi
4324	mv ${localout[$i]} ${frelout[$i]}
4325
4326	file_saved=false
4327
4328	if [[ $archive_system = asterix ]]
4329	then
4330	do_stageout=true
4331	(( stageout_anz = 0 ))
4332	while [[ $do_stageout = true ]]
4333	do
4334	if [[ $files_for_pes = false ]]
4335	then
4336	stageout ${frelout[$i]} > STAGE_OUTPUT
4337	else
4338	stageout -t ${frelout[$i]} > STAGE_OUTPUT
4339	fi
4340	cat STAGE_OUTPUT
4341	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
4342	then
4343	file_saved=true
4344	do_stageout=false
4345	else
4346	if [[ $files_for_pes = false ]]
4347	then
4348	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
4349	else
4350	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
4351	fi
4352	(( stageout_anz = stageout_anz + 1 ))
4353	if (( stageout_anz == 10 ))
4354	then
4355	printf "\n +++ stoped after 10 unsuccessful tries!"
4356	archive_save=false
4357	do_stageout=false
4358	else
4359	printf "\n *** new try to store on archive after 15 min:"
4360	sleep 900
4361	fi
4362	fi
4363	done
4364	elif [[ $archive_system = DMF ]]
4365	then
4366	if [[ $files_for_pes = false ]]
4367	then
4368	printf "\n +++ archiving of single files impossible on $archive_system!\n"
4369	locat=DMF
4370	exit
4371	else
4372	rm -rf $ARCHIVE/${frelout[$i]}
4373	cp -r ${frelout[$i]} $ARCHIVE
4374	fi
4375	file_saved=true
4376	elif [[ $archive_system = tivoli ]]
4377	then
4378	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4379	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4380	# GELEGT WERDEN
4381	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4382	chmod g+rx $tmp_data_catalog
4383	if [[ $files_for_pes = false ]]
4384	then
4385	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4386	else
4387	mkdir $tmp_data_catalog/${frelout[$i]}
4388	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4389	fi
4390
4391	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4392	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4393	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4394	if [[ $files_for_pes = false ]]
4395	then
4396	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4397	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4398	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4399	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4400	else
4401	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4402	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4403	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4404	fi
4405
4406	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4407	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4408	file_saved=true
4409
4410	elif [[ $archive_system = ut ]]
4411	then
4412	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4413	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4414	# GELEGT WERDEN
4415	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4416	chmod g+rx $tmp_data_catalog
4417	if [[ $files_for_pes = false ]]
4418	then
4419	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4420	else
4421	mkdir $tmp_data_catalog/${frelout[$i]}
4422	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4423	fi
4424
4425	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4426	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4427	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4428	if [[ $files_for_pes = false ]]
4429	then
4430	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4431	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4432	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4433	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4434	else
4435	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4436	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4437	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4438	fi
4439
4440	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
4441	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4442	file_saved=true
4443
4444	else
4445	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
4446	archive_save=false
4447	fi
4448	if [[ $file_saved = true ]]
4449	then
4450	if [[ $files_for_pes = false ]]
4451	then
4452	cat /dev/null > ${pathout[$i]}
4453	else
4454	mkdir -p ${pathout[$i]}
4455	fi
4456	fi
4457	fi
4458
4459	# APPEND AUF LOKALER MASCHINE
4460	if [[ "${actionout[$i]}" = "a" ]]
4461	then
4462	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4463	then
4464	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}.${extout[$i]}\n"
4465	cat ${localout[$i]} >> ${pathout[$i]}.${extout[$i]}
4466	else
4467	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
4468	cat ${localout[$i]} >> ${pathout[$i]}
4469	fi
4470	fi
4471
4472	# KOPIEREN AUF LOKALER MASCHINE
4473	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
4474	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
4475	then
4476
4477	# KOPIEREN AUF EINPROZESSORMASCHINE
4478	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4479	then
4480	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
4481	if [[ $link_local_output = true ]]
4482	then
4483	printf " using ln -f\n"
4484	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4485	fi
4486	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4487	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
4488	then
4489	if [[ $link_local_output = true ]]
4490	then
4491	printf " ln failed, using cp...\n"
4492	fi
4493	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4494	fi
4495	else
4496	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
4497	if [[ $link_local_output = true ]]
4498	then
4499	printf " using ln -f\n"
4500	ln -f ${localout[$i]} ${pathout[$i]}
4501	fi
4502	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4503	if [[ ! -f "${pathout[$i]}" ]]
4504	then
4505	if [[ $link_local_output = true ]]
4506	then
4507	printf " ln failed, using cp...\n"
4508	fi
4509	cp ${localout[$i]} ${pathout[$i]}
4510	fi
4511	fi
4512
4513	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
4514	then
4515
4516	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
4517	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
4518	# WIRD DANN KOPIERT
4519	# PER MOVE UMBENANNT WERDEN
4520	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4521	if [[ $link_local_output = true ]]
4522	then
4523	printf " using ln -f\n"
4524	mkdir ${pathout[$i]}
4525	cd ${localout[$i]}
4526	for file in $(ls *)
4527	do
4528	ln -f $file ${pathout[$i]}
4529	done
4530	cd $TEMPDIR
4531	fi
4532	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4533	if [[ ! -f "${pathout[$i]}/_0000" ]]
4534	then
4535	if [[ $link_local_output = true ]]
4536	then
4537	printf " ln failed for .../_0000, using cp...\n"
4538	fi
4539	cp -r ${localout[$i]} ${pathout[$i]}
4540	fi
4541
4542	fi
4543	fi
4544	done
4545	if (( i != 0 ))
4546	then
4547	if [[ $transfer_problems = true ]]
4548	then
4549	printf "\n$striche\n *** OUTPUT-files saved"
4550	printf "\n +++ WARNING: some data transfers failed! \n"
4551	else
4552	printf "\n$striche\n *** all OUTPUT-files saved \n"
4553	fi
4554	fi
4555
4556
4557	# EVENTUELL FOLGEJOB STARTEN
4558	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4559	if [[ -f CONTINUE_RUN ]]
4560	then
4561
4562	if [[ $archive_save = true ]]
4563	then
4564
4565	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4566	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4567	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4568	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4569	# HANDEN
4570	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4571	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4572	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4573	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4574	then
4575	mc=`echo $mc \| sed 's/#/f/g'`
4576	fi
4577
4578
4579	# JOB STARTEN
4580	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4581	echo " $mc"
4582	printf "\n$striche\n"
4583	if [[ $localhost != $fromhost ]]
4584	then
4585
4586	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibms \|\| $localhost = lcflow \|\| $localhost = lckyu* ]]
4587	then
4588	echo "*** ssh will be used to initiate restart-runs!"
4589	echo " return_addres=\"$return_addres\" "
4590	echo " return_username=\"$return_username\" "
4591	if [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4592	then
4593	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4594	else
4595	if [[ $localhost = ibmkisti ]]
4596	then
4597	ssh $SSH_PORTOPT $usern@gaiad "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4598	else
4599	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4600	fi
4601	fi
4602	else
4603	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4604	locat=restart; exit
4605	fi
4606
4607	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4608	# DER AKTUELLE JOB ENDET
4609	if [[ $queue = special1q ]]
4610	then
4611	sleep 120
4612	else
4613	sleep 30
4614	fi
4615
4616	else
4617
4618	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4619	# RUFEN WERDEN, AUSSER AUF lcfimm
4620	cd $LOCAL_PWD
4621	if [[ $localhost = lcfimm ]]
4622	then
4623	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4624	elif [[ $localhost = lckyuh ]]
4625	then
4626	printf "\n +++ WARNING: no restart mechanism available for host \"$localhost\" "
4627	printf "\n please restart job manually using command:\n"
4628	printf "\n \"$mc\" "
4629	else
4630	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4631	fi
4632	cd - > /dev/null
4633	fi
4634	if [[ $localhost = lckyuh ]]
4635	then
4636	printf "\n$striche\n *** restart-run to be initiated manually\n"
4637	else
4638	printf "\n$striche\n *** restart-run initiated \n"
4639	fi
4640
4641
4642	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4643	# GEHOLT WORDEN SIND, LOESCHEN
4644	(( i = 0 ))
4645	while (( i < iin ))
4646	do
4647	(( i = i + 1 ))
4648	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4649	then
4650	rm -r $tmp_data_catalog/${frelin[$i]}
4651	fi
4652	done
4653
4654	else
4655
4656	printf "\n +++ no restart-run possible, since errors occured"
4657	printf "\n during the archive process"
4658	fi
4659
4660	fi
4661
4662
4663
4664	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4665	if [[ "$email_notification" != "none" ]]
4666	then
4667
4668	if [[ $localhost != $fromhost ]]
4669	then
4670	if [[ -f CONTINUE_RUN ]]
4671	then
4672	echo "PALM restart run necessary" > email_text
4673	echo "description header of actual run:" >> email_text
4674	cat CONTINUE_RUN >> email_text
4675	echo "mrun-command to restart:" >> email_text
4676	echo "$mc" >> email_text
4677	else
4678	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4679	fi
4680	mail $email_notification < email_text
4681	printf "\n *** email notification sent to \"$email_notification\" "
4682	fi
4683	fi
4684
4685
4686
4687	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4688	cd $HOME
4689	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4690
4691	else
4692
4693
4694	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4695	# CHENDE AKTIONEN DURCHGEFUEHRT
4696
4697	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4698	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
4699	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4700	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4701	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4702	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4703	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4704	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4705	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4706	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4707	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4708	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4709	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4710	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4711	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4712	if [[ $use_openmp = true ]]
4713	then
4714	mrun_com=${mrun_com}" -O $threads_per_task"
4715	fi
4716	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4717	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
4718	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4719	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4720	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4721	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4722	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4723	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4724	[[ "$check_namelist_files" = false ]] && mrun_com=${mrun_com}" -z"
4725	[[ "$combine_plot_fields" = false ]] && mrun_com=${mrun_com}" -Z"
4726	[[ "$max_par_io_str" != "" ]] && mrun_com=${mrun_com}" -w $max_par_io_str"
4727	if [[ $do_remote = true ]]
4728	then
4729	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4730	fi
4731
4732
4733	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4734	jobfile=jobfile.$RANDOM
4735
4736
4737	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4738	echo "mkdir $TEMPDIR" >> $jobfile
4739	echo "cd $TEMPDIR" >> $jobfile
4740
4741
4742	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4743	if [[ $do_trace = true ]]
4744	then
4745	echo "set -x" >> $jobfile
4746	else
4747	echo "set +vx" >> $jobfile
4748	fi
4749
4750
4751	# initialize the environment and load modules
4752	if [[ "$init_cmds" != "" ]]
4753	then
4754	echo "$init_cmds" >> $jobfile
4755	fi
4756	if [[ "$module_calls" != "" ]]
4757	then
4758	echo "$module_calls" >> $jobfile
4759	fi
4760
4761
4762	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4763	# DATEI FUER DEN JOB
4764	if [[ $( echo $host \| cut -c1-5 ) = lcsgi \|\| $host = ibmkisti ]]
4765	then
4766
4767	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4768	# KOPIEREN
4769	if [[ $restart_run != true ]]
4770	then
4771	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4772	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4773	fi
4774
4775	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4776	# (BEI JOBS AUF LOKALEM RECHNER REICHT CP)
4777	echo "set -x" >> $jobfile
4778	if [[ $host = $localhost ]]
4779	then
4780	echo "cp -r $working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4781	else
4782	if [[ $host != ibmkisti ]]
4783	then
4784	echo "scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4785	else
4786	# on KISTI's IBM firewall is only opened on interactive node
4787	echo "localdir=\`pwd\`" >> $jobfile
4788	echo "ssh $SSH_PORTOPT $remote_username@gaiad \"cd \$localdir; scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
4789	fi
4790	fi
4791	echo "export SOURCES_COMPLETE=true" >> $jobfile
4792
4793	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4794	# ARBEITSVERZEICHNIS VERSCHIEBEN
4795	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4796	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4797	echo "execute_mrun=true" >> $jobfile
4798	echo " " >> $jobfile
4799
4800	else
4801
4802	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4803	# SOWIE GEGEBENENFALLS DES MAKEFILES
4804	if [[ $do_compile = true ]]
4805	then
4806
4807	source_catalog=SOURCES_FOR_RUN_$fname
4808
4809	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4810	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4811	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4812	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4813	echo "export SOURCES_COMPLETE=true" >> $jobfile
4814	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4815
4816	for filename in $source_list
4817	do
4818	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4819	echo "cat > $filename << \"%END%\"" >> $jobfile
4820	cat $source_catalog/$filename >> $jobfile
4821	echo " " >> $jobfile
4822	echo "%END%" >> $jobfile
4823	echo " " >> $jobfile
4824	done
4825
4826	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4827	echo "cat > Makefile << \"%END%\"" >> $jobfile
4828	cat $source_catalog/Makefile >> $jobfile
4829	echo " " >> $jobfile
4830	echo "%END%" >> $jobfile
4831	echo " " >> $jobfile
4832
4833	echo "cd - > /dev/null" >> $jobfile
4834
4835	fi
4836
4837
4838	# ABSPEICHERN DER KONFIGURATIONSDATEI
4839	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4840	# Lines with #$ coming from the svn keyword substitution are
4841	# removed from the config file in order to avoid problems
4842	# with the SGE batch system
4843	echo "cat > $config_file << \"%END%\"" >> $jobfile
4844	if [[ $host = lckyuh ]]
4845	then
4846	# no cross compiler on compute node
4847	sed 's/frtpx/frt/g' $config_file >> $jobfile
4848	else
4849	sed 's/#$.*//g' $config_file >> $jobfile
4850	fi
4851	echo "%END%" >> $jobfile
4852	echo " " >> $jobfile
4853
4854
4855	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
4856	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4857	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
4858	if [[ $host = lckyuh ]]
4859	then
4860	sed 's/\/bin\/ksh/\/bin\/bash/g' ${PALM_BIN}/$mrun_script_name >> $jobfile
4861	else
4862	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
4863	fi
4864	echo "%END%" >> $jobfile
4865	echo "chmod u+x $mrun_script_name" >> $jobfile
4866	echo "execute_mrun=true" >> $jobfile
4867	echo " " >> $jobfile
4868
4869	fi
4870
4871
4872	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
4873	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
4874	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
4875	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
4876	if [[ $do_remote = true ]]
4877	then
4878	(( i = 0 ))
4879	while (( i < iin ))
4880	do
4881	(( i = i + 1 ))
4882	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
4883	if [[ "${transin[$i]}" = job ]]
4884	then
4885	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
4886	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
4887	echo " " >> $jobfile
4888	echo "%END%" >> $jobfile
4889	else
4890	echo "batch_scp $PORTOPT -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
4891	fi
4892
4893	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
4894	echo "if [[ \$? = 1 ]]" >> $jobfile
4895	echo "then" >> $jobfile
4896	echo " echo \" \" " >> $jobfile
4897	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
4898	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
4899	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
4900	echo " execute_mrun=false" >> $jobfile
4901	echo "fi" >> $jobfile
4902	done
4903	fi
4904
4905	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
4906	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
4907	echo "LOCAL_PWD=$working_directory" >> $jobfile
4908	echo "export LOCAL_PWD" >> $jobfile
4909
4910	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
4911	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
4912	echo "export LOCAL_MRUN_PATH" >> $jobfile
4913
4914	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
4915	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
4916	then
4917	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
4918	elif [[ $host = lcflow \|\| $localhost = lcflow ]]
4919	then
4920	echo "export PALM_BIN=$PALM_BIN" \| sed -e 's:'$HOME':$HOME:' >> $jobfile
4921	echo "export PATH=\$PATH:\$PALM_BIN" >> $jobfile
4922	fi
4923
4924	# MRUN AUF ZIELRECHNER AUFRUFEN (queue is workaround for ibmkisti)
4925	echo "set -x" >> $jobfile
4926	echo "queue=$queue" >> $jobfile
4927	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
4928	echo 'ls -al; echo `pwd`' >> $jobfile
4929	echo "cd \$HOME" >> $jobfile
4930	echo "rm -rf $TEMPDIR" >> $jobfile
4931
4932
4933
4934
4935	# JOB PER SUBJOB STARTEN
4936	if [[ $silent = false ]]
4937	then
4938	printf "\n "
4939	else
4940	printf "\n\n"
4941	fi
4942
4943	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $PORTOPT $jobfile
4944	rm -rf $jobfile
4945
4946
4947	fi # ENDE REMOTE-TEIL
4948
4949
4950
4951	# ENDE DER PROZEDUR

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