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source: palm/trunk/SCRIPTS/mrun @ 1758

Last change on this file since 1758 was 1758, checked in by maronga, 9 years ago
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[1649]	1	#!/bin/ksh
[1046]	2
[1059]	3	# mrun - script for running PALM jobs
	4
[1046]	5	#--------------------------------------------------------------------------------#
	6	# This file is part of PALM.
	7	#
	8	# PALM is free software: you can redistribute it and/or modify it under the terms
	9	# of the GNU General Public License as published by the Free Software Foundation,
	10	# either version 3 of the License, or (at your option) any later version.
	11	#
	12	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
	13	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
	14	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
	15	#
	16	# You should have received a copy of the GNU General Public License along with
	17	# PALM. If not, see <http://www.gnu.org/licenses/>.
	18	#
[1753]	19	# Copyright 1997-2015 Leibniz Universitaet Hannover
[1046]	20	#--------------------------------------------------------------------------------#
	21	#
	22	# Current revisions:
[1090]	23	# ------------------
[1305]	24	#
[1758]	25	#
[1200]	26	# Former revisions:
	27	# -----------------
	28	# $Id: mrun 1758 2016-02-22 15:53:28Z maronga $
[1623]	29	#
[1758]	30	# 1757 2016-02-22 15:49:32Z maronga
	31	# Bugfix: use random number when PBS system is not working properly at lccray*
	32	#
[1756]	33	# 1755 2016-02-22 13:53:39Z maronga
	34	# Minor bugfix to last commit
	35	#
[1754]	36	# 1753 2016-02-22 13:49:49Z maronga
	37	# Bugfix: use random job number when PBS job nummer retrieval fails on lccray*
	38	#
[1623]	39	# 1622 2015-07-20 06:21:36Z heinze
	40	# bugfix for Mistral (lcbullhh)
	41	#
	42	# 1621 2015-07-17 11:39:33Z heinze
[1621]	43	# adjustments for Mistral at DKRZ Hamburg (lcbullhh)
[1200]	44	#
[1610]	45	# 1609 2015-07-03 15:37:58Z maronga
	46	# Modified the random number of the temporary working directory to match the
	47	# queuing system number on HLRN-III (lccray*).
	48	#
[1605]	49	# 1604 2015-06-23 15:48:03Z suehring
	50	# Enable coupled runs for lcmuk
	51	#
[1599]	52	# 1598 2015-05-29 06:45:40Z raasch
	53	# bugfix for creating hostfile and total number of MPI tasks if run in openmp-mode on one node
	54	#
[1550]	55	# 1549 2015-01-30 14:26:16Z suehring
	56	# Enable interactive debug sessions with allinea debugger
	57	#
[1548]	58	# 1547 2015-01-29 15:09:12Z witha
	59	# adjustments for ForWind computing cluster (lcflow)
	60	#
[1492]	61	# 1491 2014-11-12 08:12:57Z heinze
	62	# correct setting of batch_job allowed for ibm-machines
	63	#
[1469]	64	# 1468 2014-09-24 14:06:57Z maronga
	65	# Typo removed (addres->address)
	66	# Bugfix: returning files to IMUK via ssh did not work for lccrayh and lcycrayb
	67	# Added support for restart runs (remote) for lcxe6
	68	#
[1443]	69	# 1442 2014-07-28 07:09:10Z raasch
	70	# default queues for HLRN-III (lccrayb/lccrayh) defined
	71	#
[1423]	72	# 1422 2014-07-02 10:01:25Z kanani
	73	# automatic restarts enabled for lccrayb,
	74	# adjustment of path to compilervars.sh at IMUK (see automatic restarts)
	75	#
[1421]	76	# 1420 2014-06-10 06:24:14Z raasch
	77	# -j1 option added to aprung command for lccrayf (CSC)
	78	#
[1403]	79	# 1402 2014-05-09 14:25:13Z raasch
	80	# batch_job added to envpar-NAMELIST
	81	#
[1358]	82	# 1357 2014-04-11 15:02:03Z witha
	83	# adjustments for lccrayh (automatic restarts on lccrayh outside of IMUK are now
	84	# possible)
	85	#
[1328]	86	# 1320 2014-03-20 08:40:49Z raasch
	87	# check namelist file set false by default
	88	#
[1305]	89	# 1304 2014-03-12 10:29:42Z raasch
	90	# ulimit option changed from -Ss to -s
	91	#
	92	# bugfix: missing "fi" in r1289
	93	#
[1290]	94	# 1289 2014-03-04 07:12:34Z raasch
	95	# comments translated to English
	96	# necriam-, fimm-, ibmy-, and sgi-specific code removed
	97	# export of variables for palm and interpret_config removed
	98	#
[1282]	99	# 1281 2014-02-01 07:55:49Z raasch
	100	# rsync-copy restricted to Cray machines, since command is unavailable on some
	101	# other systems
	102	#
[1280]	103	# 1279 2014-01-28 12:10:14Z raasch
	104	# tasks_per_node must not be an integral divisor of numprocs any more. This was done
	105	# in order to remove annoying restrictions concerning the number of processors which
	106	# appear on machines with larger nodes (e.g. containing 24 cores). Now without this
	107	# restriction, one of the nodes will be filled with less than the given number of
	108	# tasks per node. A respective warning is given.
	109	#
[1275]	110	# 1274 2014-01-09 13:14:54Z heinze
	111	# adjustments for lccrayh
	112	#
[1273]	113	# 1272 2014-01-08 10:19:32Z witha
	114	# small adjustment for lcflow
	115	#
[1271]	116	# 1270 2013-12-16 11:05:01Z fricke
	117	# call of combine_plot_fields adjusted for lccrayb/lccrayh
	118	#
[1256]	119	# 1255 2013-11-07 14:43:35Z raasch
	120	# further adjustments for lccrayb remote access
	121	#
[1242]	122	# 1241 2013-10-30 11:36:58Z heinze
	123	# Enable use of nudging input and input of large scale forcing from
	124	# external files
	125	#
[1230]	126	# 1229 2013-09-20 06:55:19Z raasch
	127	# further adjustments for lccrayb
	128	#
[1225]	129	# 1224 2013-09-16 07:27:23Z raasch
	130	# first adjustments for lccrayb
	131	#
[1211]	132	# 1210 2013-08-14 10:58:20Z raasch
	133	# fftw support added
	134	#
[1203]	135	# 1201 2013-07-10 16:17:59Z witha
	136	# adjustments for Forwind cluster (lcflow)
	137	#
[1200]	138	# 1199 2013-07-05 14:52:22Z raasch
[1199]	139	# adjustments for CSC Helsinki (lccrayf),
	140	# executables for batch jobs can be created in advance, in order to avoid calling
	141	# the compiler within the batch job (only works if batch jobs are submitted on
	142	# local host)
[1104]	143	#
[1191]	144	# 1190 2013-06-25 09:39:21Z heinze
	145	# enable use of automatic restarts for ibmh
[1185]	146	# use of cluster/express queue enabled (ibmh)
[1104]	147	#
[1125]	148	# 1124 2013-04-09 15:46:52Z raasch
	149	# variable "memory" is exported via typeset option -x, because otherwise an unknown
	150	# side effect may lead to data loss while getopts is reading the script-option arguments
	151	#
[1123]	152	# 1122 2013-04-09 08:37:16Z heinze
	153	# Bugfix: change type of variable last_char
	154	#
[1121]	155	# 1119 2013-04-05 15:11:19Z raasch
	156	# Bugfix for setting -T option for subjob
	157	#
[1109]	158	# 1108 2013-03-05 07:03:32Z raasch
	159	# bugfix for coupled runs on lckyut/lckyuh
	160	#
[1107]	161	# 1106 2013-03-04 05:31:38Z raasch
	162	# --stdin argument for mpiexec on lckyuh
	163	# -y and -Y settings output to header
	164	#
[1104]	165	# 1103 2013-02-20 02:15:53Z raasch
[1103]	166	# default script runs again under ksh, because of unsolved problems with read
	167	# from stdin: when bash script is called from a ksh, message "read error: 0:
	168	# Resource temporarily unavailable" appears and script does not stop,
	169	# further bash compatibility adjustments,
	170	# shebang line replaced by /bin/bash when running jobs on lckyuh; no restarts
	171	# on lckyuh, but mrun does not terminate and issues a warning instead
[1046]	172	#
[1102]	173	# 1101 2013-02-17 10:20:21Z raasch
	174	# script now running under bash instead of ksh, which required small adjustments
	175	# (output formatting with printf instead "typeset -L/-R", print replaced by echo,
	176	# read from stdin),
	177	# cross compilername on lckyuh compute nodes replaced by real compiler name
	178	#
[1100]	179	# 1099 2013-02-10 01:47:43Z raasch
	180	# adjustments for Kyushu-University computing center (lckyuh - hayaka)
	181	# and for Forwind cluster (lcflow)
	182	# small further adjustments for lckyut
	183	#
[1096]	184	# 1094 2013-02-03 01:52:12Z raasch
	185	# explicit ssh/scp port can be set in config file with environment variable
	186	# scp_port. This port is handled to all ssh/scp/batch_scp calls.
	187	# decalpha parts (yonsei) removed
	188	#
[1091]	189	# 2013-02-02 07:06:13Z raasch
[1099]	190	# adjustments for Kyushu-University computing center (lckyut - tatara)
[1091]	191	#
[1084]	192	# 1083 2013-01-04 10:22:09Z maronga
	193	# bugfix in parameter file check (read %cpp_options was missing)
	194	#
[1070]	195	# 1069 2012-11-28 16:18:43Z maronga
	196	# bugfix: coupling mode was always set to mpi2, typos removed
	197	#
[1059]	198	# 1058 2012-11-21 07:00:35Z raasch
	199	# Intel inspector (inspxe) is given the number of PEs instead of the number of
	200	# nodes
	201	#
[1047]	202	# 1046 2012-11-09 14:38:45Z maronga
	203	# code put under GPL (PALM 3.9)
	204	#
[1090]	205	# 21/03/94 - Siggi - first version finished
	206	# 03/03/94 - Siggi - script development started
	207	#
[1059]	208	#--------------------------------------------------------------------------------#
[1090]	209	# mrun - script for running PALM jobs
	210	#--------------------------------------------------------------------------------#
[1]	211
[1047]	212
[1]	213
[1289]	214	# DECLARATION OF VARIABLES AND THEIR DEFUALT VALUES
[1]	215
[1289]	216	set +o allexport # SUPPRESS EXPORT OF ALL VARIABLES, SINCE IN THE PAST THIS
	217	# LES TO PROBLEMS IN ROUTINES CALLED BY MRUN
	218	# (TOO MANY ARGUMENTS - PROBLEM)
	219	set +o noclobber # EXISTING FILES ARE ALLOWED TO BE OVERWRITTEN
[1]	220
	221	AddFilenames=""
	222	additional_conditions=""
	223	add_source_path=""
	224	afname=""
	225	archive_save=true
	226	archive_system=none
[1320]	227	check_namelist_files=false
[920]	228	combine_plot_fields=true
[1]	229	compiler_name=""
	230	cond1=""
	231	cond2=""
	232	config_file=.mrun.config
[206]	233	coupled_dist=""
	234	coupled_mode="mpi1"
[1]	235	cpp_opts=""
[82]	236	cpp_options=""
[1]	237	cpumax=0
	238	cpurest=0
[1199]	239	create_executable_for_batch=false
[1]	240	delete_temporary_catalog=true
	241	do_batch=false
	242	do_compile=true
	243	do_remote=false
	244	do_stagein=true
	245	do_stageout=true
	246	do_trace=false
[352]	247	email_notification="none"
[1]	248	exclude=""
	249	executable=""
	250	execution_error=false
[1210]	251	fftw_inc=""
	252	fftw_lib=""
	253	fftw_support=false
[1289]	254	fname=test
[1]	255	fromhost=""
[78]	256	global_revision=""
[122]	257	group_number=none
[1]	258	host=""
	259	host_file=""
	260	hp=""
	261	ignore_archive_error=false
	262	input_list=""
	263	interpreted_config_file=""
[164]	264	job_catalog="~/job_queue"
[1]	265	job_on_file=""
	266	keep_data_from_previous_run=false
[183]	267	link_local_input=false
[149]	268	link_local_output=false
[1]	269	localhost_realname=$(hostname)
[260]	270	local_dvrserver_running=.FALSE.
[1]	271	locat=normal
	272	mainprog=""
	273	makefile=""
[759]	274	max_par_io_str=""
[1]	275	mc=$0
	276	while [[ $(echo $mc \| grep -c "/") != 0 ]]
	277	do
	278	mc=`echo $mc \| cut -f2- -d"/"`
	279	done
[493]	280	module_calls=""
[1]	281	mrun_script_name=$mc
[82]	282	netcdf_inc=""
	283	netcdf_lib=""
[1]	284	netcdf_support=false
	285	node_usage=default
	286	numprocs=""
[206]	287	numprocs_atmos=0
	288	numprocs_ocean=0
[1]	289	OOPT=""
	290	openmp=false
	291	output_list=""
	292	package_list=""
	293	queue=none
	294	read_from_config=""
[5]	295	restart_run=false
[622]	296	if [[ `hostname` = rte10 ]]
[1]	297	then
[1468]	298	return_address=133.5.185.60
	299	echo "+++ WARNING: fixed return_address = $return_address is used !!!!!"
[693]	300	elif [[ `hostname` = climate0 ]]
	301	then
[1468]	302	return_address=165.132.26.68
	303	echo "+++ WARNING: fixed return_address = $return_address is used !!!!!"
[1021]	304	elif [[ `hostname` = urban00 ]]
	305	then
[1468]	306	return_address=147.46.30.151
	307	echo "+++ WARNING: fixed return_address = $return_address is used !!!!!"
[622]	308	else
[1468]	309	return_address=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
[1]	310	fi
	311	return_password=""
	312	return_username=$LOGNAME
	313	remotecall=false
	314	remote_username=""
[102]	315	run_coupled_model=false
[1]	316	run_mode=""
[397]	317	store_on_archive_system=false
[1289]	318	dashes=" ----------------------------------------------------------------------------"
[1]	319	silent=false
	320	source_list=""
	321	source_path=SOURCE
	322	tasks_per_node=""
	323	threads_per_task=1
	324	tmpcreate=false
	325	tmp_data_catalog=""
	326	transfer_problems=false
	327	usern=$LOGNAME
[377]	328	use_openmp=false
[1289]	329	version="MRUN 2.1 Rev$Rev: 1758 $"
[1]	330	working_directory=`pwd`
	331	TOPT=""
	332	XOPT=""
	333	zeit=$( date \| cut -c 12-19 )
	334
[1124]	335	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 stagein_anz=0 stageout_anz=0
[1289]	336	typeset -x -i memory=0 # HAS TO BE EXPORTED HERE, OTHERWISE AN UNKNOWN SIDE
	337	# SIDE EFFECT MAY CAUSE DATA LOSS WHEN GETOPTS IS READING THE
	338	# SCRIPT-OPTION ARGUMENTS
[1279]	339	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek last_char_int maxcycle minuten nodes pes remaining_pes sekunden tp1
[1]	340
[1289]	341	# ERROR HANDLING IN CASE OF EXIT
[83]	342	trap 'rm -rf $working_directory/tmp_mrun
[1289]	343	if [[ $locat != normal && $locat != control_c ]]
[1]	344	then
	345
[1289]	346	# CARRY OUT ERROR-COMMANDS GIVEN IN THE CONFIGURATION FILE (EC:)
[1]	347	(( i = 0 ))
	348	while (( i < iec ))
	349	do
	350	(( i = i + 1 ))
	351	printf "\n *** Execution of ERROR-command:\n"
	352	printf " >>> ${err_command[$i]}\n"
	353	eval ${err_command[$i]}
	354	done
[1101]	355	if [[ -n $interpreted_config_file ]]
	356	then
[1]	357	rm -rf $interpreted_config_file
	358	fi
[1101]	359	if [[ -n .mrun_environment ]]
	360	then
[71]	361	rm -rf .mrun_environment
	362	fi
[1]	363	if [[ $tmpcreate = true ]]
	364	then
	365	printf "\n *** Contents of \"$TEMPDIR\":\n"
	366	ls -al; cd
	367	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
	368	fi
[260]	369	if [[ "$dvrserver_id" != "" ]]
	370	then
	371	echo "+++ killing dvrserver_id=$dvrserver_id"
	372	kill $dvrserver_id
	373	fi
[1]	374	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
	375	then
	376	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
	377	fi
	378	printf "\n\n+++ MRUN killed \n\n"
	379	elif [[ $locat != control_c ]]
	380	then
	381	printf "\n\n --> all actions finished\n\n"
	382	printf " Bye, bye $usern !!\n\n"
	383	fi' exit
	384
	385
[1289]	386	# ACTIONS IN CASE OF TERMINAL-BREAK (CONTROL-C):
[83]	387	trap 'rm -rf $working_directory/tmp_mrun
[807]	388	rm -rf $working_directory/tmp_check_namelist_files
[69]	389	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
[1]	390	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
	391	then
	392	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
	393	fi
[260]	394	if [[ "$dvrserver_id" != "" ]]
	395	then
	396	echo "+++ killing dvrserver_id=$dvrserver_id"
	397	kill $dvrserver_id
	398	fi
[1]	399	printf "\n+++ MRUN killed by \"^C\" \n\n"
	400	locat=control_c
	401	exit
	402	' 2
	403
	404
[22]	405	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
	406	# BEEN SET
	407	if [[ "$PALM_BIN" = "" ]]
	408	then
	409	printf "\n +++ environment variable PALM_BIN has not been set"
	410	printf "\n please set it to the directory where the PALM scripts are located"
	411	locat=palm_bin; exit
	412	fi
[180]	413	export PATH=$PALM_BIN:$PATH
[22]	414
	415
[1]	416
[1289]	417	# READ SHELLSCRIPT-OPTIONS AND REBUILD THE MRUN-COMMAND STRING (MC),
	418	# WHICH WILL BE USED TO START RESTART-JOBS
[920]	419	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vw:xX:yY:zZ option
[1]	420	do
	421	case $option in
	422	(a) afname=$OPTARG;;
[397]	423	(A) store_on_archive_system=true; mc="$mc -A";;
[1]	424	(b) do_batch=true; mc="$mc -b";;
	425	(B) delete_temporary_catalog=false; mc="$mc -B";;
	426	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
[5]	427	(C) restart_run=true; mc="$mc -C";;
[1]	428	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
[210]	429	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
[79]	430	(F) job_on_file="-D"; mc="$mc -F";;
[122]	431	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
[78]	432	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
[1]	433	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
	434	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
	435	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
	436	(I) ignore_archive_error=true; mc="$mc -I";;
	437	(k) keep_data_from_previous_run=true; mc="$mc -k";;
[210]	438	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
[1]	439	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
	440	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
	441	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
	442	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
[622]	443	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
[1]	444	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
	445	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
	446	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
	447	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
[1468]	448	(R) remotecall=true;return_address=$OPTARG; mc="$mc -R$OPTARG";;
[1]	449	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
	450	(S) read_from_config=false; mc="$mc -S";;
	451	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
[759]	452	(T) mrun_tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
[1]	453	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
	454	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
	455	(v) silent=true; mc="$mc -v";;
[759]	456	(w) max_par_io_str=$OPTARG; mc="$mc -w$OPTARG";;
[1]	457	(x) do_trace=true;set -x; mc="$mc -x";;
	458	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
[291]	459	(y) ocean_file_appendix=true; mc="$mc -y";;
[206]	460	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
[807]	461	(z) check_namelist_files=false; mc="$mc -z";;
[920]	462	(Z) combine_plot_fields=false; mc="$mc -Z";;
[1]	463	(\?) printf "\n +++ unknown option $OPTARG \n"
	464	printf "\n --> type \"$0 ?\" for available options \n"
	465	locat=parameter;exit;;
	466	esac
	467	done
	468
	469
[1289]	470	# SKIP GIVEN OPTIONS TO READ POSITIONAL PARAMETER, IF GIVEN
	471	# CURRENTLY ONLY PARAMETER ? (TO OUTPUT A SHORT COMMAND INFO) IS ALLOWED
[1101]	472	(( to_shift = $OPTIND - 1 ))
	473	shift $to_shift
[1]	474
[1289]	475	# PRINT SHORT DESCRIPTION OF MRUN OPTIONS
[1]	476	if [[ "$1" = "?" ]]
	477	then
	478	(printf "\n *** mrun can be called as follows:\n"
[920]	479	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. -z -Z <modus> \n"
[1]	480	printf "\n Description of available options:\n"
	481	printf "\n Option Description Default-Value"
	482	printf "\n -a base name of input files equiv. -d"
[400]	483	printf "\n -A archiving when using file-attribute fl"
[1]	484	printf "\n -b batch-job on local machine ---"
	485	printf "\n -B do not delete temporary directory at end ---"
	486	printf "\n -c configuration file .mrun.config"
	487	printf "\n -d base name of files attached to program test"
	488	printf "\n -D preprocessor(cpp)-directives \"\" "
	489	printf "\n -F create remote job file only ---"
	490	printf "\n -h execution host $localhost_realname"
	491	printf "\n -i INPUT control list \"\" "
	492	printf "\n -I archiving errors of previous batch-jobs"
	493	printf "\n will be ignored"
	494	printf "\n -k keep data from previous run"
	495	printf "\n -K additional conditions for controling"
	496	printf "\n usage of conditional code and"
	497	printf "\n env-variables in configuration file \"\" "
	498	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
	499	printf "\n -M Makefile name Makefile"
	500	printf "\n -n node usage (shared/not_shared) depending on -h"
	501	printf "\n -o OUTPUT control list \"\" "
[1304]	502	printf "\n -O threads per openMP task ---"
[1]	503	printf "\n -p software package list \"\" "
	504	printf "\n -q queue \"$queue\" "
	505	printf "\n -r run control list (combines -i -o) \"\" "
	506	printf "\n -s filenames of routines to be compiled \"\" "
	507	printf "\n must end with .f, .f90, .F, or .c !"
	508	printf "\n use \"..\" for more than one file and wildcards"
[837]	509	printf "\n -s LM compiles all locally modified files"
[1]	510	printf "\n -S config file interpreted by shellscript ---"
	511	printf "\n -t allowed cpu-time in seconds (batch) 0"
	512	printf "\n -T tasks per node depending on -h"
	513	printf "\n -u username on remote machine \"\" "
	514	printf "\n -v no prompt for confirmation ---"
[759]	515	printf "\n -w maximum parallel io streams as given by -X"
[1]	516	printf "\n -x tracing of mrun for debug purposes ---"
	517	printf "\n -X # of processors (on parallel machines) 1"
[291]	518	printf "\n -y add appendix \"_O\" to all local output"
	519	printf "\n files (ocean precursor runs followed by"
	520	printf "\n coupled atmosphere-ocean runs) ---"
[206]	521	printf "\n -Y run coupled model, \"#1 #2\" with"
	522	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
[920]	523	printf "\n -z disable a priori parameter file check ---"
	524	printf "\n -Z skip combine_plot_fields at the end of "
	525	printf "\n the simulation ---"
[1]	526	printf "\n "
	527	printf "\n Possible values of positional parameter <modus>:"
	528	printf "\n \"?\" - this outline \n\n") \| more
	529	exit
	530	elif [[ "$1" != "" ]]
	531	then
	532	printf "\n +++ positional parameter $1 unknown \n"
	533	locat=parameter; exit
	534	fi
	535
	536
	537
[1289]	538	# SHORT STARTING MESSAGE
[1]	539	printf "\n*** $version "
	540	printf "\n will be executed. Please wait ..."
	541
	542
[82]	543
[1289]	544	# CHECK, IF CONFIGURATION FILE EXISTS
[82]	545	if [[ ! -f $config_file ]]
	546	then
	547	printf "\n\n +++ configuration file: "
	548	printf "\n $config_file"
	549	printf "\n does not exist"
	550	locat=connect; exit
	551	fi
	552
	553
[1289]	554	# DETERMINE THE HOST-IDENTIFIER (localhost) FROM THE CONFIGURATION FILE
[82]	555	line=""
	556	grep "%host_identifier" $config_file > tmp_mrun
	557	while read line
	558	do
[206]	559	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
[82]	560	then
	561	HOSTNAME=`echo $line \| cut -d" " -s -f2`
	562	host_identifier=`echo $line \| cut -d" " -s -f3`
[83]	563	if [[ $localhost_realname = $HOSTNAME ]]
[82]	564	then
	565	localhost=$host_identifier
	566	break
	567	fi
	568	fi
	569	done < tmp_mrun
	570
	571	if [[ "$localhost" = "" ]]
	572	then
	573	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
	574	printf "\n for local host \"$localhost_realname\"."
	575	printf "\n Please add line"
	576	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
	577	printf "\n to the configuration file."
	578	locat=localhost; exit
	579	fi
	580
	581
[1289]	582	# SET HOST-SPECIFIC VARIABLES
[82]	583	case $localhost_realname in
[397]	584	(r1\|r2\|h01\|b01) archive_system=tivoli;;
[82]	585	(cs*) archive_system=ut;;
	586	esac
	587
	588
[1289]	589	# ??? THIS SHOULD BE DECRIBED IN THE MRUN DOCUMENTATION ???
	590	# SET BASENAME OF THE INPUT-FILES TO THE GENERAL BASENAME (GIVEN BY OPTION -d),
	591	# IF IT HAS NOT BEEN SET BY THE USER DIFFERENTLY (USING OPTION -a)
[1]	592	[[ "$afname" = "" ]] && afname=$fname
	593
	594
[1289]	595	# ADD RUN-FILE ACTIVATION STRINGS (GIVEN BY OPTION -r) TO THE
	596	# RESPECTIVE LISTS FOR ACTIVATING THE INPUT/OUTPUT FILE CONNECTION
	597	# STATEMENTS IN THE CONFIGURATION FILE
[1]	598	if [[ "$run_mode" != "" ]]
	599	then
	600	input_list="$input_list $run_mode"
	601	output_list="$output_list $run_mode"
	602	fi
	603
	604
[1289]	605	# ??? is this (and the respective option -H) really required ???
	606	# STORE HOSTNAME, FROM WHICH THE JOB IS STARTED,
	607	# BUT ONLY IF IT HASN'T BEEN ALREADY SET BY OPTION -H
	608	# (MRUN IS AUTOMATICALLY SETTING THIS OPTION IN THE MRUN-CALLS WITHIN
	609	# THOSE BATCH-JOBS, WHICH ARE CREATED BY MRUN ITSELF)
[1]	610	if [[ "$fromhost" = "" ]]
	611	then
	612	fromhost=$localhost
	613	fi
	614
	615
[1289]	616	# CHECK, IF EXECUTION SHALL TO BE DONE ON THE REMOTE-MACHINE.
	617	# VALUE OF do_remote IS IMPORTANT FOR THE FILE CONNECTIONS.
	618	# IN CASE OF EXECUTION ON A REMOTE-MACHINE, A BATCH-JOB HAS
[1609]	619	# TO BE SUBMITTED (I.E. do_batch=true)
[1]	620	if [[ -n $host && "$host" != $localhost ]]
	621	then
	622	do_batch=true
	623	do_remote=true
	624	case $host in
[1620]	625	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|nech\|lcbullhh\|lccrayb\|lccrayh\|lccrayf\|lcflow\|lckyoto\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
[1]	626	(*) printf "\n"
[83]	627	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	628	printf "\n is not available"
[1]	629	locat=nqs; (( iec = 0 )); exit;;
	630	esac
	631	else
	632	host=$localhost
	633	fi
	634
	635
[1289]	636	# EVALUATE ADDITIONAL CONDITIONS GIVEN BY OPTION -K
[1]	637	if [[ -n $additional_conditions ]]
	638	then
[69]	639	cond1=`echo $additional_conditions \| cut -d" " -f1`
	640	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
	641	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
[1]	642	if [[ -n $dummy ]]
	643	then
	644	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
	645	locat=options; exit
	646	fi
[503]	647	block=_$cond1
	648	[[ -n $cond2 ]] && block=${block}_$cond2
[1]	649	fi
	650
	651
[1289]	652	# EVALUATE MODEL COUPLING FEATURES (OPTION -Y) AND DETERMINE coupled_mode
[206]	653	if [[ $run_coupled_model = true ]]
	654	then
	655
[1289]	656	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
	657	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
	658
	659	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
[206]	660	then
	661
[1289]	662	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
	663	printf "\n PEs (total) : $numprocs"
	664	printf "\n PEs (atmosphere): $numprocs_atmos"
	665	printf "\n PEs (ocean) : $numprocs_ocean"
	666	locat=coupling; exit
[206]	667
[1289]	668	fi
[206]	669
	670
	671	# GET coupled_mode FROM THE CONFIG FILE
	672	line=""
	673	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
	674	while read line
	675	do
[1069]	676	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && $(echo $line \| cut -d" " -s -f4) = $cond1 && $(echo $line \| cut -d" " -s -f4) = $cond2 ]]
[206]	677	then
	678	coupled_mode="mpi2"
	679	fi
	680	done < tmp_mrun
	681
	682	fi
	683
[1289]	684	# CHECK, IF FILE-ARCHIVING HAS FAILED IN PREVIOUS JOB (OF A JOB-CHAIN)
[1]	685	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
	686	then
	687	if [[ $ignore_archive_error = false ]]
	688	then
	689	printf "\n +++ data archiving of previous run failed"
	690	printf "\n see directory \~/job_queue on remote machine"
	691	locat=archive; exit
	692	else
	693	printf "\n +++ warning: data archiving in a previous run failed"
	694	printf "\n MRUN continues, trying to get backup copy"
	695	fi
	696	fi
	697
	698
[1289]	699	# SAVE VALUES OF MRUN-OPTIONS SICHERN IN ORDER TO OVERWRITE
	700	# THOSE VALUES GIVEN IN THE CONFIGURATION-FILE
[1099]	701	mrun_memory=$memory
	702	mrun_group_number=$group_number
	703	mrun_cpumax=$cpumax
	704	mrun_numprocs=$numprocs
[1]	705
[1099]	706
[1289]	707	# READ AND EVALUATE THE CONFIGURATION-FILE FROM WITHIN THIS SHELLSCRIPT
[1468]	708	# (OPTION -S). THE DEFAULT IS USING THE ROUTINE <<<<
[1]	709	if [[ "$read_from_config" = false ]]
	710	then
	711	[[ $silent = false ]] && printf "\n Reading the configuration file... "
[1289]	712
	713	# READ THE CONFIGURATION FILE LINE BY LINE
[1]	714	while read zeile
	715	do
	716	[[ $silent = false ]] && printf "."
	717
	718
[1289]	719	# FIRST REPLACE ENVIRONMENT-VARIABLES BY THEIR RESPECTIVE VALUES
[1]	720	eval zeile=\"$zeile\"
	721
	722
[1289]	723	# INTERPRET THE LINE
[21]	724	if [[ "$(echo $zeile)" = "" ]]
[1]	725	then
[1289]	726	# EMPTY LINE, NO ACTION
[21]	727	continue
[1]	728
[21]	729	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
	730	then
	731
[1289]	732	# LINE IS A COMMENT LINE
[1]	733	true
	734
	735	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
	736	then
	737
[1289]	738	# LINE DEFINES AN ENVIRONMENT-VARIABLE
[1]	739	zeile=$(echo $zeile \| cut -c2-)
[69]	740	var=`echo $zeile \| cut -d" " -f1`
	741	value=`echo $zeile \| cut -d" " -s -f2`
	742	for_host=`echo $zeile \| cut -d" " -s -f3`
	743	for_cond1=`echo $zeile \| cut -d" " -s -f4`
	744	for_cond2=`echo $zeile \| cut -d" " -s -f5`
[1]	745
	746	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
	747	then
	748
[1289]	749	# REPLACE ":" BY " " IN COMPILER- CPP- OR LINKER-OPTIONS,
	750	# "::" IS REPLACED BY ":".
[1]	751	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
	752
	753
[1289]	754	# VALUE FROM THE CONFIGURATION-FILE IS ASSIGNED TO THE
	755	# ENVIRONMENT-VARIABLE, BUT ONLY IF NO VALUE HAS BEEN ALREADY
	756	# ASSIGNED WITHIN THIS SCRIPT (E.G. BY SCRIPT-OPTIONS).
	757	# NON-ASSIGNED VARIABLES HAVE VALUE "" OR 0 (IN CASE OF INTEGER).
	758	# HENCE THE GENERAL RULE IS: SCRIPT-OPTION OVERWRITES THE
	759	# CONFIGURATION-FILE.
[1]	760	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
	761	then
	762	eval $var=\$value
	763
[1289]	764	# TERMINAL OUTPUT OF ENVIRONMENT-VARIABLES, IF TRACEBACK IS SWITCHED on
[1]	765	if [[ $do_trace = true ]]
	766	then
	767	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
	768	fi
	769	fi
	770
[1289]	771	# IF AN ENVIRONMENT-VARIABLE DETERMINES THE HOST, THEN EVALUATE IT IMMEDIATELY:
	772	# VALUE OF do-remote IS REQUIRED FOR THE FILE CONNECTIONS (COPY OF I/O FILES).
	773	# IF EXECUTION IS SCHEDULED FOR A REMOTE-MASCHINE, A BATCH-JOB
	774	# MUST HAVE TO BE STARTED
[1]	775	if [[ $var = host ]]
	776	then
	777	if [[ -n $host && "$host" != $localhost ]]
	778	then
	779	do_batch=true
	780	do_remote=true
	781	case $host in
[1620]	782	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|lcbullhh\|lccrayb\|lccrayh\|lccrayf\|lcflow\|lckyoto\|nech\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
[83]	783	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	784	printf "\n is not available"
[1]	785	locat=nqs; exit;;
	786	esac
	787	else
	788	host=$localhost
	789	fi
	790	fi
	791
[1289]	792	# USER-DEFINED ENVIRONMENT VARIABLES MUST BE EXPORTED,
	793	# BECAUSE THEY MAY BE REQUIRED IN OTHER SCRIPTS CALLED
	794	# BY MRUN (E.G. subjob)
[1]	795	export $var
	796	fi
	797
	798
	799
	800
	801	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
	802	then
	803
[1289]	804	# LINE DEFINES ERROR-COMMAND
[1]	805	(( iec = iec + 1 ))
	806	zeile=$(echo $zeile \| cut -c4-)
	807	err_command[$iec]="$zeile"
	808
	809	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
	810	then
	811
[1289]	812	# LINE DEFINES INPUT-COMMAND
[1]	813	(( iic = iic + 1 ))
	814	zeile=$(echo $zeile \| cut -c4-)
	815	in_command[$iic]="$zeile"
	816
	817	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
	818	then
	819
[1289]	820	# LINE DEFINES OUTPUT-COMMAND
[1]	821	(( ioc = ioc + 1 ))
	822	zeile=$(echo $zeile \| cut -c4-)
	823	out_command[$ioc]="$zeile"
	824
	825	else
	826
[1289]	827	# LINE DEFINES FILE CONNECTION. READ THE FILE ATTRIBUTES.
	828	# s2a: in/out - field
	829	# s2b: loc - field (optional)
	830	# s2c: tr/ar - field (optional)
[69]	831	s1=`echo $zeile \| cut -d" " -f1`
	832	s2=`echo $zeile \| cut -d" " -s -f2`
[1]	833	s2a=$(echo $s2 \| cut -d":" -f1)
	834	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
	835	then
	836	s2b=""
	837	s2c=""
	838	else
[69]	839	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
	840	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
[1]	841	fi
[69]	842	s3=`echo $zeile \| cut -d" " -f3`
	843	s4=`echo $zeile \| cut -d" " -s -f4`
	844	s5=`echo $zeile \| cut -d" " -s -f5`
	845	s6=`echo $zeile \| cut -d" " -s -f6`
[1]	846
	847
[1289]	848	# STORE FILE CONNECTION, IF ACTIVATED BY ACTIVATION-STRING FROM
	849	# INPUT- OR OUTPUT-LIST.
	850	# VARIABLE S3 MAY CONTAIN A LIST OF ACTIVATION STRINGS (FIELD-SEPERATOR ":").
	851	# IF EXECUTION IS SCHEDULED FOR A REMOTE-MACHINE AND THE FILE IS ONLY
	852	# LOCALLY REQUIRED ON THAT MACHINE (I.E. s2b = loc), THE FILE CONNECTION
	853	# IS NOT CHECKED AND STORED.
[1]	854	IFSALT="$IFS"; IFS="$IFS:"
	855	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
	856	then
	857	found=false
	858	for actual in $input_list
	859	do
	860	for formal in $s3
	861	do
	862	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
	863	done
	864	done
	865	if [[ $found = true ]]
	866	then
	867	(( iin = iin + 1 ))
	868	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
	869	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
	870	extin[$iin]=$s6
	871	fi
	872	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
	873	then
	874	found=false
	875	for actual in $output_list
	876	do
	877	for formal in $s3
	878	do
	879	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
	880	done
	881	done
	882	if [[ $found = true ]]
	883	then
	884	(( iout = iout + 1 ))
	885	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
	886	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
	887	fi
	888	elif [[ "$s2a" != in && "$s2a" != out ]]
	889	then
	890	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
	891	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
	892	locat=connect; exit
	893	fi
	894	IFS="$IFSALT"
	895	fi
	896	done < $config_file
	897
	898	else
	899
[1289]	900	# EVALUATE THE CONFIGURATION-FILE BY FORTRAN-PROGRAM
[1]	901	[[ $silent = false ]] && printf "..."
[1289]	902	interpreted_config_file=.icf.$RANDOM
[1]	903
	904
[69]	905
[1289]	906	# PROVIDE VALUES OF ENVIRONMENT-VARIABLE FOR interpret_config VIA NAMELIST-FILE
[69]	907	cat > .mrun_environment << %%END%%
	908	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
	909	config_file = '$config_file', do_remote = '$do_remote',
	910	do_trace = '$do_trace', host = '$host',
	911	input_list = '$input_list', icf = '$interpreted_config_file',
	912	localhost = '$localhost', output_list = '$output_list' /
	913
	914	%%END%%
	915
[1289]	916	if [[ "$host" != $localhost ]]
[66]	917	then
[503]	918
[1289]	919	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
	920	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
	921	if [[ $? != 0 ]]
[503]	922	then
[1289]	923	printf "\n\n +++ no interpret_config found"
	924	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
	925	locat=interpret_config; exit
	926	fi
	927	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
	928	$interpret_config_executable
[503]	929
[1289]	930	else
[503]	931
[1289]	932	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
	933	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
	934	then
	935	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
	936	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
	937	locat=interpret_config; exit
[503]	938	else
[1289]	939	interpret_config${block}.x
	940	fi
[503]	941
[66]	942	fi
[71]	943	rm .mrun_environment
[1]	944
[71]	945
[1289]	946	# EXECUTE SHELL-COMMANDS GENERATED BY interpret_config WITHIN THIS SHELL
[1]	947	chmod u+x $interpreted_config_file
	948	export PATH=$PATH:.
	949	. $interpreted_config_file
[71]	950	rm $interpreted_config_file
[1]	951
[1099]	952	fi
[71]	953
[69]	954
[1289]	955	# VALUES OF MRUN-OPTIONS OVERWRITE THOSE FROM THE CONFIGURATION-FILE
[1099]	956	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
	957	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
	958	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
	959	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
	960	[[ "$max_par_io_str" != "" ]] && maximum_parallel_io_streams=$max_par_io_str
	961	[[ "$mrun_tasks_per_node" != "" ]] && tasks_per_node=$mrun_tasks_per_node
[1]	962
	963
[1289]	964	# ON THE LOCAL MACHINE, DETERMINE (FROM THE CONFIGURATION-FILE) THE PATH
	965	# FOR SOURCE-FILES TO BE COMPILED.
	966	# IN A BATCH-JOB, SOURCES (ROUTINES TO BE COMPILED) ARE COMPLETE ALREADY.
	967	# BEFORE MRUN IS CALLED IN THE JOB, SOURCES_COMPLETE = true IS ASSIGNED (SEE FURTHER BELOW).
[1]	968	if [[ "$SOURCES_COMPLETE" = "" ]]
	969	then
	970
[1289]	971	# FIRST CHECK, IF A GLOBAL SOURCE PATH (TO BE USED FOR ALL HOSTS)
	972	# HAS BEEN DEFINED
[1]	973	source_path=""
	974	line=""
	975	grep "%source_path" $config_file > tmp_mrun
	976	while read line
	977	do
	978	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	979	then
	980	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
	981	then
	982	global_source_path=`echo $line \| cut -d" " -f2`
	983	fi
	984	fi
	985	done < tmp_mrun
	986
	987	line=""
	988	found=false
	989	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
	990	while read line
	991	do
	992	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	993	then
	994	if [[ $found = true ]]
	995	then
	996	printf "\n\n +++ more than one source path found in configuration file"
	997	printf "\n for local host \"$localhost\" "
	998	locat=source_path; exit
	999	fi
	1000	source_path=`echo $line \| cut -d" " -f2`
	1001	found=true
	1002	fi
	1003	done < tmp_mrun
	1004	rm tmp_mrun
	1005
	1006	if [[ "$source_path" = "" ]]
	1007	then
	1008	if [[ "$global_source_path" != "" ]]
	1009	then
	1010	source_path=$global_source_path
	1011	else
	1012	printf "\n\n +++ no source path found in configuration file"
	1013	printf "\n for local host \"$localhost\" "
	1014	locat=source_path; exit
	1015	fi
	1016	fi
	1017	eval source_path=$source_path
	1018
	1019	if [[ ! -d $source_path ]]
	1020	then
	1021	printf "\n\n +++ source path \"$source_path\" on local host"
	1022	printf "\n \"$localhost\" does not exist"
	1023	locat=source_path; exit
	1024	fi
	1025
	1026	fi
	1027
	1028
[1289]	1029	# GET THE GLOBAL REVISION-NUMBER OF THE SVN-REPOSITORY
	1030	# (HANDED OVER TO RESTART-RUNS USING OPTION -G)
	1031	if [[ "$global_revision" = "" && $host != "ibmkisti" ]]
[78]	1032	then
	1033	global_revision=`svnversion $source_path 2>/dev/null`
	1034	global_revision="Rev: $global_revision"
	1035	fi
[1]	1036
[78]	1037
[1289]	1038	# ??? das darf doch eigentlich garnicht passieren, weil optionen config-datei uebersteuern ???
	1039	# CHECK AGAIN, IF EXECUTION SHALL BE DONE ON A REMOTE-HOST (BATCH-JOB).
	1040	# (HOST MAY HAVE CHANGED DUE TO SETTINGS IN THE CONFIGURATION-FILE)
[1]	1041	if [[ -n $host && "$host" != $localhost ]]
	1042	then
	1043	do_batch=true
	1044	do_remote=true
	1045	case $host in
[1620]	1046	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|lcbullhh\|lccrayb\|lccrayh\|lccrayf\|lcflow\|lckyoto\|nech\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
[1]	1047	(*) printf "\n"
[83]	1048	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	1049	printf "\n is not available"
[1]	1050	locat=nqs; (( iec = 0 )); exit;;
	1051	esac
	1052	else
	1053	host=$localhost
	1054	fi
	1055
	1056
[1620]	1057
[1289]	1058	# IN CASE OF PARALLEL EXECUTION, CHECK SOME SPECIFICATIONS CONCERNING PROCESSOR NUMBERS
[1]	1059	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
	1060	then
	1061
[1289]	1062	# CHECK, IF NUMBER OF CORES TO BE USED HAS BEEN GIVEN
[1]	1063	if [[ ! -n $numprocs ]]
	1064	then
	1065	printf "\n"
	1066	printf "\n +++ option \"-K parallel\" requires additional specification"
	1067	printf "\n of the number of processors to be used by"
	1068	printf "\n mrun-option \"-X\" or by environment-variable"
	1069	printf "\n \"numprocs\" in the configuration file"
	1070	locat=numprocs; (( iec = 0 )); exit
	1071	fi
	1072
[1289]	1073	# CHECK, IF THE NUMBER OF CORES PER NODE HAS BEEN GIVEN UND IF IT IS AN
	1074	# INTEGRAL DIVISOR OF THE TOTAL NUMBER OF CORES GIVEN BY OPTION -X
[1039]	1075	if [[ "$tasks_per_node" = "" && $host != lcflow && $host != lcxt5m ]]
[1]	1076	then
[759]	1077	printf "\n"
	1078	printf "\n +++ option \"-T\" (tasks per node) is missing"
	1079	printf "\n set -T option or define tasks_per_node in the config file"
	1080	locat=tasks_per_node; (( iec = 0 )); exit
	1081	fi
[1279]	1082
	1083	if (( numprocs < tasks_per_node ))
	1084	then
	1085	printf "\n"
	1086	printf "\n +++ tasks per node (-T) cannot exceed total number of processors (-X)"
	1087	printf "\n given values: -T $tasks_per_node -X $numprocs"
	1088	locat=tasks_per_node; (( iec = 0 )); exit
	1089	fi
	1090
[1039]	1091	if [[ $host != lcflow && $host != lcxt5m ]]
[759]	1092	then
[1279]	1093	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
[848]	1094	(( ival = $tasks_per_node ))
	1095	(( pes = numprocs ))
	1096	(( ii = pes / ival ))
[1279]	1097	(( remaining_pes = pes - ii * ival ))
	1098	if (( remaining_pes > 0 ))
[848]	1099	then
	1100	printf "\n"
[1279]	1101	printf "\n +++ WARNING: tasks per node (option \"-T\") is not an integral"
[848]	1102	printf "\n divisor of the total number of processors (option \"-X\")"
	1103	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
[1279]	1104	printf "\n One of the nodes is filled with $remaining_pes instead of $tasks_per_node tasks"
	1105	(( nodes = nodes + 1 ))
[848]	1106	fi
[1]	1107	fi
	1108
[759]	1109
[377]	1110	# SETTINGS FOR SUBJOB-COMMAND
[1]	1111	OOPT="-O $threads_per_task"
	1112
[1289]	1113	# SET THE TOTAL NUMBER OF NODES, REQUIRED FOR THE SUBJOB-COMMAND (SEE FURTHER BELOW)
[1]	1114	if [[ "$tasks_per_node" != "" ]]
	1115	then
[1119]	1116	TOPT="-T $tasks_per_node"
[1]	1117	fi
	1118
[1289]	1119	# CHECK node_usage FOR ALLOWED VALUES AND SET DEFAULT VALUE, IF NECESSARY
[1]	1120	if [[ $node_usage = default ]]
	1121	then
	1122	if [[ $host = ibms ]]
	1123	then
	1124	node_usage=shared
	1125	else
	1126	node_usage=not_shared
	1127	fi
	1128	fi
[181]	1129
[635]	1130	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
[1]	1131	then
	1132	printf "\n"
	1133	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
	1134	printf "\n \"shared\" or \"not_shared\""
	1135	locat=tasks_per_node; (( iec = 0 )); exit
	1136	fi
	1137
	1138	fi
	1139
[1289]	1140	# CHECK IF HOSTFILE EXISTS
[1]	1141	if [[ -n $hostfile ]]
	1142	then
	1143	if [[ ! -f $hostfile ]]
	1144	then
	1145	printf "\n"
	1146	printf "\n +++ hostfile \"$hostfile\" does not exist"
	1147	locat=hostfile; exit
	1148	fi
	1149	fi
	1150
	1151
[1289]	1152	# SET DEFAULT VALUE FOR THE MAXIMUM NUMBER OF PARALLEL IO STREAMS
[759]	1153	if [[ "$maximum_parallel_io_streams" = "" ]]
	1154	then
	1155	maximum_parallel_io_streams=$numprocs
	1156	fi
[1]	1157
[759]	1158
[1289]	1159	# SET PORT NUMBER OPTION FOR CALLS OF SSH/SCP, subjob AND batch_scp SCRIPTS
[1094]	1160	if [[ "$scp_port" != "" ]]
	1161	then
	1162	PORTOPT="-P $scp_port"
	1163	SSH_PORTOPT="-p $scp_port"
	1164	fi
	1165
	1166
[1289]	1167	# SET DEFAULT-QUEUE, IF NOT GIVEN
[1]	1168	if [[ $queue = none ]]
	1169	then
	1170	case $host in
[1184]	1171	(ibmh) queue=cluster;;
[693]	1172	(ibmkisti) queue=class.32plus;;
[1620]	1173	(lcbullhh) queue=compute;;
[1442]	1174	(lccrayb) queue=mpp1q;;
	1175	(lccrayh) queue=mpp1q;;
[1040]	1176	(lckiaps) queue=normal;;
[440]	1177	(lckyoto) queue=ph;;
[1099]	1178	(lckyuh) queue=fx-single;;
	1179	(lckyut) queue=cx-single;;
[635]	1180	(lctit) queue=S;;
[1]	1181	(nech) queue=none;;
	1182	(unics) queue=unics;;
	1183	esac
	1184	fi
	1185
	1186
[1289]	1187	# GENERATE FULL FILENAMES OF INPUT-FILES, INCLUDING THEIR PATH
	1188	# CHECK, IF INPUT-FILES EXIST, AND DETERMINE HIGHEST CYCLE NUMBER (IF CYCLES EXIST)
[1]	1189	(( i = 0 ))
	1190	while (( i < iin ))
	1191	do
	1192	(( i = i + 1 ))
	1193	(( maxcycle = 0 ))
	1194
[1289]	1195	# GENERATE PATH AND FULL FILE NAME (then-BRANCH: FIXED FULL NAME IS GIVEN, I.E. THE
	1196	# FILE IDENTIFIER IS NOT PART OF THE FILENAME))
[1]	1197	if [[ "${actionin[$i]}" = di ]]
	1198	then
[1289]	1199	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # EVALUATE REMOTE-PATH ON THE REMOTE
	1200	# HOST ONLY
[1]	1201	eval filename=${pathin[$i]}/${endin[$i]}
	1202	else
[1289]	1203	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # EVALUATE REMOTE-PATH ON THE REMOTE
	1204	# HOST ONLY
[1]	1205	eval filename=${pathin[$i]}/${afname}${endin[$i]}
	1206	fi
[892]	1207	eval pathname=${pathin[$i]}
[1]	1208
[1289]	1209	# SAVE INPUT FILE NAME FOR PARAMETER FILE CHECK
[920]	1210	if [[ ("${transin[$i]}" = job) && (-f $filename) ]]
	1211	then
	1212	filename_input=$filename
	1213	fi
[892]	1214
[1289]	1215	# CHECK IF FILE EXISTS
[1]	1216	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
[746]	1217	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
[1]	1218	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
	1219	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
	1220	then
[1289]	1221
	1222	# FILES WITH ATTRIBUTE locopt ARE OPTIONAL. NO ABORT, IF THEY DO NOT EXIST.
[1]	1223	if [[ "${transin[$i]}" != "locopt" ]]
	1224	then
	1225	printf "\n\n +++ INPUT-file: "
	1226	if [[ "${extin[$i]}" = "" ]]
	1227	then
	1228	printf "\n $filename"
	1229	else
	1230	printf "\n $filename.${extin[$i]}"
	1231	fi
	1232	printf "\n does not exist\n"
	1233	locat=input; exit
	1234	else
	1235	transin[$i]="unavailable"
	1236	fi
	1237	else
	1238
[1289]	1239	# DETERMINE THE FILE'S CYCLE NUMBER
[1]	1240	ls -1 -d $filename > filelist 2>/dev/null
	1241	ls -1 -d $filename.* >> filelist 2>/dev/null
	1242	while read zeile
	1243	do
[1101]	1244	cycle=$(echo $zeile \| cut -f2 -d".")
[1]	1245	if [[ "$cycle" = "$zeile" ]]
	1246	then
	1247	(( icycle = 0 ))
	1248	elif [[ "$cycle" = "${extin[$i]}" ]]
	1249	then
	1250	(( icycle = 0 ))
	1251	else
	1252	(( icycle = $cycle ))
	1253	fi
	1254	if (( icycle > maxcycle ))
	1255	then
	1256	(( maxcycle = icycle ))
	1257	file_to_be_used=$zeile
	1258	fi
	1259	done <filelist
	1260	rm filelist
	1261
[1289]	1262	# APPEND CYCLE NUMBER TO FILENAME
[1]	1263	if (( maxcycle > 0 ))
	1264	then
	1265	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
	1266	then
	1267	filename=${filename}.$maxcycle.${extin[$i]}
	1268	else
	1269	filename=${filename}.$maxcycle
	1270	fi
	1271	else
	1272	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
	1273	then
	1274	filename=${filename}.${extin[$i]}
	1275	fi
	1276	fi
	1277
[1289]	1278	# STORE FILENAME WITHOUT PATH BUT WITH CYCLE NUMBER,
	1279	# BECAUSE IT MIGHT BE REQUIRED LATER TO RESTORE THE FILE FROM AN ARCHIVE-SYSTEM
[1]	1280	absnamein[$i]=$filename
	1281	if (( maxcycle > 0 ))
	1282	then
	1283	if [[ "${actionin[$i]}" = di ]]
	1284	then
	1285	frelin[$i]=${endin[$i]}.$maxcycle
	1286	else
	1287	frelin[$i]=${afname}${endin[$i]}.$maxcycle
	1288	fi
	1289	else
	1290	if [[ "${actionin[$i]}" = di ]]
	1291	then
	1292	frelin[$i]=${endin[$i]}
	1293	else
	1294	frelin[$i]=${afname}${endin[$i]}
	1295	fi
	1296	fi
	1297
	1298	fi
	1299	done
[920]	1300
[1289]	1301	# GENERATE FULL FILENAMES OF OUTPUT-FILES (WITHOUT $ OR ~),
	1302	# CHECK, IF OUTPUT-FILES EXIST, AND DETERMINE HIGHEST CYCLE NUMBER (IF CYCLES EXIST),
	1303	# OR, IN CASE THAT FILE DOES NOT EXIST, CHECK, IF IT CAN BE CREATED
	1304	# THESE ACTIONS ARE NOT CARRIED OUT, IF FILES SHALL BE TRASFERRED FROM THE REMOTE TO
	1305	# THE LOCAL HOST (BECAUSE THEIR IS NO DIRECT ACCESS TO THE LOCAL DIRECTORIES FROM THE
	1306	# REMOTE HOST)
[1]	1307	(( i = 0 ))
	1308	while (( i < iout ))
	1309	do
	1310	(( i = i + 1 ))
	1311	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
	1312	then
[260]	1313	if [[ "${actionout[$i]}" = tr ]]
[1]	1314	then
	1315	actionout[$i]=""
[260]	1316	elif [[ "${actionout[$i]}" = trpe ]]
	1317	then
	1318	actionout[$i]=pe
[1]	1319	elif [[ "${actionout[$i]}" = tra ]]
	1320	then
	1321	actionout[$i]=a
	1322	fi
	1323	(( maxcycle = 0 ))
	1324	eval filename=${pathout[$i]}/${fname}${endout[$i]}
	1325	eval catalogname=${pathout[$i]}
	1326	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
[746]	1327	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
[1]	1328	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
	1329	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
	1330	then
	1331
[1289]	1332	# IF OUTPUT-FILE DOES NOT EXIST CHECK, IF IT CAN BE CREATED
[1]	1333	if cat /dev/null > $filename
	1334	then
	1335	rm $filename
	1336	else
	1337
[1289]	1338	# CHECK, IF THE DIRECTORY WHERE FILE SHALL BE COPIED TO EXISTS
	1339	# IF IT DOES NOT EXIST, TRY TO CREATE IT
[1]	1340	if [[ ! -d $catalogname ]]
	1341	then
	1342	if mkdir -p $catalogname
	1343	then
	1344	printf "\n\n *** directory:"
	1345	printf "\n $catalogname"
	1346	printf "\n was created\n"
	1347	else
	1348	printf "\n\n +++ OUTPUT-file:"
	1349	printf "\n $filename"
	1350	printf "\n cannot be created, because directory does not exist"
	1351	printf "\n and cannot be created either"
	1352	printf "\n"
	1353	locat=output ; exit
	1354	fi 2>/dev/null
	1355	else
	1356	printf "\n\n +++ OUTPUT-file:"
	1357	printf "\n $filename"
	1358	printf "\n cannot be created, although directory exists"
	1359	printf "\n"
	1360	locat=output ; exit
	1361	fi
	1362	fi 2>/dev/null
	1363	else
	1364
[1289]	1365	# DETERMINE THE CYCLE NUMBER
[1]	1366	ls -1 -d $filename > filelist 2>/dev/null
	1367	ls -1 -d $filename.* >> filelist 2>/dev/null
	1368	while read zeile
	1369	do
[1101]	1370	cycle=$(echo $zeile \| cut -f2 -d".")
[1]	1371	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
	1372	then
	1373	(( icycle = 1 ))
	1374	else
	1375	(( icycle = $cycle + 1 ))
	1376	fi
	1377	if (( icycle > maxcycle ))
	1378	then
	1379	(( maxcycle = icycle ))
	1380	fi
	1381	done <filelist
	1382	rm filelist
	1383	fi
	1384
[1289]	1385	# APPEND CYCLE NUMBER TO FILENAME AND CHECK, IF FILE CAN BE CREATED
	1386	# IN CASE OF FILE-APPEND, FILE MUST BE APPENDED TO THE ONE WITH HIGHEST CYCLE NUMBER
[1]	1387	if [[ "${actionout[$i]}" != a ]]
	1388	then
	1389	if (( maxcycle > 0 ))
	1390	then
	1391	filename=${filename}.$maxcycle
	1392	if cat /dev/null > $filename
	1393	then
	1394	rm $filename
	1395	else
	1396	printf "\n +++ OUTPUT-file:"
	1397	printf "\n $filename"
	1398	printf "\n cannot be created"
	1399	locat=output ; exit
	1400	fi
	1401	fi
	1402	else
	1403	(( maxcycle = maxcycle - 1 ))
	1404	if (( maxcycle > 0 ))
	1405	then
	1406	filename=${filename}.$maxcycle
	1407	fi
	1408	fi
	1409
[1289]	1410	# STORE FILENAME WITHOUT PATH BUT WITH CYCLE NUMBER,
	1411	# BECAUSE IT MIGHT BE REQUIRED LATER TO STORE THE FILE ON AN ARCHIVE-SYSTEM
	1412	# OR TO PUT THIS FILENAME ON FILE OUTPUT_FILE_CONNECTIONS
[1]	1413	pathout[$i]=$filename
	1414	if (( maxcycle > 0 ))
	1415	then
	1416	frelout[$i]=${fname}${endout[$i]}.$maxcycle
	1417	else
	1418	frelout[$i]=${fname}${endout[$i]}
	1419	fi
	1420
	1421	fi
	1422	done
	1423
	1424
[1289]	1425	# THE DVR-PACKAGE REQUIRES ITS OWN LIBRARY
[83]	1426	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
	1427	then
[260]	1428	if [[ "$dvr_inc" = "" ]]
[83]	1429	then
[260]	1430	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
[83]	1431	printf "\n This is required for the dvrp_graphics package.\n"
[260]	1432	locat=dvr; exit
[83]	1433	fi
[260]	1434	if [[ "$dvr_lib" = "" ]]
[83]	1435	then
[260]	1436	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
[83]	1437	printf "\n This is required for the dvrp_graphics package.\n"
[260]	1438	locat=dvr; exit
[83]	1439	fi
	1440	fi
	1441
	1442
[1289]	1443	# CHECK, WETHER A MAIN PROGRAM OR AN EXECUTABLE HAVE BEEN DECLARED.
	1444	# EXECUTABLES DO NOT NEED TO BE COMPILED.
[1]	1445	if [[ "$mainprog" = "" && "$executable" = "" ]]
	1446	then
	1447	printf "\n +++ neither main program nor executable defined"
	1448	locat=source; exit
	1449	elif [[ "$mainprog" != "" && "$executable" != "" ]]
	1450	then
	1451	printf "\n +++ main program as well as executable defined"
	1452	locat=source; exit
	1453	elif [[ "$mainprog" = "" && "$executable" != "" ]]
	1454	then
	1455	do_compile=false
	1456	fi
	1457
	1458
[1289]	1459	# CREATE SOURCE-DIRECTORY TO COLLECT ROUTINES TO BE COMPILED.
	1460	# LATER THE MRUN-SCRIPT AND CONFIGURATION-FILE WILL ALSO BE COPIED TO THIS DIRECTORY.
[193]	1461	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
[191]	1462	then
	1463	rm -rf SOURCES_FOR_RUN_$fname
	1464	mkdir SOURCES_FOR_RUN_$fname
	1465	fi
	1466
	1467
[1289]	1468	# COLLECT ALL ROUTINES TO BE COMPILED
	1469	# THIS IS NOT REQUIRED WITHIN BATCH-JOBS, BECAUSE ROUTINES HAVE ALREADY BEEN COLLECTED
	1470	# BY THE MRUN-CALL WHICH CREATED THE BATCH-JOB.
[1]	1471	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
	1472	then
	1473
[5]	1474	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
[1]	1475
[838]	1476	if [[ "$source_list" = LOCALLY_MODIFIED ]]
[1]	1477	then
	1478
[1289]	1479	# DETERMINE MODIFIED FILES OF THE SVN WORKING COPY
[5]	1480	source_list=""
	1481	cd $source_path
	1482
	1483
[1289]	1484	# CHECK, IF DIRECTORY IS UNDER SVN CONTROL
[5]	1485	if [[ ! -d .svn ]]
	1486	then
	1487	printf "\n\n +++ source directory"
	1488	printf "\n \"$source_path\" "
	1489	printf "\n is not under control of \"subversion\"."
[306]	1490	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
[5]	1491	fi
	1492
	1493
[1289]	1494	# LIST ALL MODIFIED SOURCE CODE FILES
[5]	1495	Filenames=""
[69]	1496	svn status > tmp_mrun
	1497	while read line
[5]	1498	do
	1499	firstc=`echo $line \| cut -c1`
	1500	if [[ $firstc = M \|\| $firstc = "?" ]]
	1501	then
	1502	Name=`echo "$line" \| cut -c8-`
	1503	extension=`echo $Name \| cut -d. -f2`
	1504	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
	1505	then
	1506	Filenames="$Filenames "$Name
	1507	fi
	1508	fi
[69]	1509	done < tmp_mrun
[5]	1510
	1511
[1289]	1512	# COPY FILES TO SOURCES_FOR_RUN_...
[5]	1513	for dateiname in $Filenames
	1514	do
	1515	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
	1516	source_list=$source_list"$dateiname "
	1517	done
	1518
	1519	cd - > /dev/null
	1520
	1521
[1289]	1522	# COPY FILES GIVEN BY OPTION -s TO DIRECTORY SOURCES_FOR_RUN_...
	1523	# AUTOMATIC RESTART RUNS JUST ACCESS THE DIRECTORY CREATED BY THE INITIAL RUN
[5]	1524	elif [[ "$source_list" != "" && $restart_run != true ]]
[1]	1525	then
	1526
	1527	cd $source_path
	1528
	1529	for filename in $source_list
	1530	do
	1531
[1289]	1532	# SOURCE CODE FILE IS NOT ALLOWED TO INCLUDE PATH
[1103]	1533	if [[ $(echo $filename \| grep -c "/") != 0 ]]
[1]	1534	then
	1535	printf "\n +++ source code file: $filename"
	1536	printf "\n must not contain (\"/\") "
	1537	locat=source; exit
	1538	fi
	1539
	1540	if [[ ! -f $filename ]]
	1541	then
	1542	printf "\n +++ source code file: $filename"
	1543	printf "\n does not exist"
	1544	locat=source; exit
	1545	else
	1546	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
	1547	fi
	1548
	1549	done
	1550
	1551	cd - > /dev/null
	1552
	1553	fi
	1554
	1555
[1289]	1556	# CHECK, IF A MAIN PROGRAM EXISTS AND IF IT IS PART OF THE LIST OF FILES
	1557	# TO BE COMPILED. IF NOT, ADD IT TO THE LIST.
[5]	1558	if [[ $restart_run != true ]]
[1]	1559	then
	1560
	1561	if [[ ! -f "$source_path/$mainprog" ]]
	1562	then
	1563	printf "\n\n +++ main program: $mainprog"
	1564	printf "\n does not exist in source directory"
	1565	printf "\n \"$source_path\"\n"
	1566	locat=source; exit
	1567	else
	1568	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
	1569	then
	1570	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
	1571	source_list=${mainprog}" $source_list"
	1572	fi
	1573	fi
	1574	fi
	1575
	1576
[1289]	1577	# CHECK, IF MAKEFILE EXISTS AND COPY IT TO THE SOURCES_FOR_RUN... DIRECTORY
	1578	# NOT REQUIRED FOR RESTART RUNS, SOURCES_FOR_RUN... HAS BEEN CREATED BY THE INITIAL RUN
[211]	1579	if [[ "$restart_run" != true ]]
	1580	then
	1581	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
	1582	if [[ ! -f $makefile ]]
	1583	then
	1584	printf "\n +++ file \"$makefile\" does not exist"
	1585	locat=make; exit
	1586	else
	1587	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
	1588	fi
	1589	fi
	1590
	1591
[1289]	1592	# COPY FILES FROM OPTIONAL SOURCE PATH GIVEN IN THE CONFIGURATION FILE
[5]	1593	if [[ $restart_run != true && "$add_source_path" != "" ]]
[1]	1594	then
	1595
[1289]	1596	# DOES THE DIRECTORY EXIST?
[1]	1597	if [[ ! -d $add_source_path ]]
	1598	then
	1599	printf "\n\n +++ WARNING: additional source code directory"
	1600	printf "\n \"$add_source_path\" "
	1601	printf "\n does not exist or is not a directory."
	1602	printf "\n No source code will be used from this directory!\n"
	1603	add_source_path=""
[931]	1604	if [[ $silent == false ]]
	1605	then
	1606	sleep 3
	1607	fi
[1]	1608	else
	1609
	1610	cd $add_source_path
[211]	1611	found=false
[1]	1612
	1613	Names=$(ls -1 *.f90 2>&1)
	1614	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
	1615	Names=$(ls -1 *.F90 2>&1)
	1616	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1617	Names=$(ls -1 *.F 2>&1)
	1618	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1619	Names=$(ls -1 *.f 2>&1)
	1620	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1621	Names=$(ls -1 *.c 2>&1)
	1622	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1623
	1624	cd - > /dev/null
	1625	cd SOURCES_FOR_RUN_$fname
	1626
[211]	1627	# COPY MAKEFILE IF EXISTING
	1628	if [[ -f $add_source_path/Makefile ]]
	1629	then
	1630	printf "\n\n *** user Makefile from directory"
	1631	printf "\n \"$add_source_path\" is used \n"
[931]	1632	if [[ $silent == false ]]
	1633	then
	1634	sleep 1
	1635	fi
[211]	1636	cp $add_source_path/Makefile .
	1637	fi
	1638
[1]	1639	for dateiname in $AddFilenames
	1640	do
	1641	if [[ -f $dateiname ]]
	1642	then
	1643	printf "\n +++ source code file \"$dateiname\" found in additional"
	1644	printf "\n source code directory \"$add_source_path\" "
[211]	1645	printf "\n but was also given with option \"-s\" which means that it should be taken"
	1646	printf "\n from directory \"$source_path\"."
[1]	1647	locat=source; exit
	1648	fi
	1649
	1650	cp $add_source_path/$dateiname .
	1651	source_list="$source_list $dateiname"
	1652
[211]	1653	# CHECK IF FILE IS CONTAINED IN MAKEFILE
	1654	if [[ $(grep -c $dateiname Makefile) = 0 ]]
	1655	then
	1656	printf "\n\n +++ user file \"$dateiname\" "
	1657	printf "\n is not listed in Makefile \n"
	1658	locat=source; exit
	1659	else
	1660
	1661	if [[ $found = false ]]
[1]	1662	then
[211]	1663	found=true
	1664	printf "\n\n *** following user file(s) added to the"
	1665	printf " files to be translated:\n "
[1]	1666	fi
[211]	1667	printf "$dateiname "
[931]	1668	if [[ $silent == false ]]
	1669	then
	1670	sleep 0.5
	1671	fi
	1672
[1]	1673	fi
	1674	done
[211]	1675	[[ $found = true ]] && printf "\n"
[1]	1676	cd - > /dev/null
	1677	fi
	1678	fi
	1679
	1680
[1289]	1681	# ADD ALL ROUTINES BELONGING TO SOFTWARE PACKAGES (GIVEN BY OPTION -p)
	1682	# TO THE LIST OF FILES TO BE COMPILED
[5]	1683	if [[ $restart_run != true && -n $package_list ]]
[1]	1684	then
	1685
	1686	cd $source_path
	1687
	1688	for package in $package_list
	1689	do
	1690
	1691	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
	1692
[1289]	1693	# DETERMINE FILES BELONGING TO THE PACKAGE
	1694	# ERROR MESSAGE ARE REDIRECTED TO /dev/null, BECAUSE WILDCARD (*) ALSO GIVES
	1695	# THE NAME OF THE DIRECTORY
[1]	1696	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
	1697
	1698
[1289]	1699	# ADD THESE FILES TO THE LIST OF FILES TO BE COMPILED,
	1700	# IF THEY ARE NOT ALREADY PART OF THE LIST
[1]	1701	for source_list_name in $package_source_list
	1702	do
	1703	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
	1704	then
	1705
[1289]	1706	# ONLY TAKE FILES WITH VALID SUFFIX
[1]	1707	ending=`echo $source_list_name \| cut -f2 -d.`
	1708	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
	1709	then
	1710	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
	1711	source_list="$source_list $source_list_name"
	1712	fi
	1713	fi
	1714	done
	1715	done
	1716
	1717	cd - > /dev/null
	1718	fi
	1719
	1720	fi # do_compile=true
	1721
	1722
[1289]	1723	# IF SOURCE CODE IS TO BE COMPILED, DO SOME MORE CHECKS
	1724	# AND SET PRE-PROCESSOR DIRECTIVES
[1199]	1725	if [[ $do_compile = true \|\| $create_executable_for_batch = true ]]
[1]	1726	then
	1727
[1289]	1728	# SET PREPROCESSOR-DIRECTIVES TO SELECT OPERATING SYSTEM SPECIFIC CODE
[1]	1729	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1730	then
[82]	1731	cpp_options="${cpp_options},-D__ibm=__ibm"
[1]	1732	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
	1733	then
[82]	1734	cpp_options="$cpp_options -D__nec"
	1735	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
	1736	then
	1737	cpp_options="$cpp_options -D__lc"
[1]	1738	else
[82]	1739	cpp_options="$cpp_options -D__$localhost"
[1]	1740	fi
[83]	1741
[1289]	1742	# SET DIRECTIVES GIVEN BY OPTION -K (E.G. parallel)
[1]	1743	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1744	then
[82]	1745	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
	1746	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
[1]	1747	else
[82]	1748	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
	1749	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
[1]	1750	fi
[83]	1751
[1289]	1752	# SET DIRECTIVES FOR ACTIVATING SOFTWARE-PACKAGES (OPTION -p)
[1]	1753	if [[ -n $package_list ]]
	1754	then
	1755	for package in $package_list
	1756	do
	1757	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1758	then
	1759	if [[ $package != "dvrp_graphics+1PE" ]]
	1760	then
[82]	1761	cpp_options="${cpp_options},-D__$package=__$package"
[1]	1762	else
[82]	1763	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
[1]	1764	export use_seperate_pe_for_dvrp_output=true
	1765	fi
	1766	else
	1767	if [[ $package != "dvrp_graphics+1PE" ]]
	1768	then
[82]	1769	cpp_options="$cpp_options -D__$package"
[1]	1770	else
[82]	1771	cpp_options="$cpp_options -D__dvrp_graphics"
[1]	1772	export use_seperate_pe_for_dvrp_output=true
	1773	fi
	1774	fi
	1775	done
	1776	fi
[83]	1777
[1289]	1778	# SET DIRECTIVES GIVEN BY OPTION -D
[1]	1779	if [[ -n $cpp_opts ]]
	1780	then
	1781	for popts in $cpp_opts
	1782	do
[82]	1783	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1784	then
	1785	cpp_options="${cpp_options},-D__$popts=__$popts"
	1786	else
	1787	cpp_options="$cpp_options -D__$popts"
	1788	fi
[1]	1789	done
	1790	fi
	1791
	1792	else
	1793
	1794
[1289]	1795	# FOR LOCAL RUNS CHECK AGAIN, IF EXECUTABLE EXISTS
[1]	1796	if [[ $do_remote = false ]]
	1797	then
	1798	if [[ ! -f $executable ]]
	1799	then
	1800	printf "\n +++ executable file: $executable"
	1801	printf "\n does not exist"
	1802	locat=executable; exit
	1803	fi
	1804	fi
	1805	fi
	1806
	1807
[1289]	1808	# DETERMINE THE JOB MODE
[1491]	1809	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
[1]	1810	then
[1491]	1811	if [[ "$LOADLBATCH" = yes ]]
	1812	then
	1813	batch_job=.TRUE.
	1814	jobmo=BATCH
	1815	else
	1816	batch_job=.FALSE.
	1817	jobmo=INTERACTIVE
	1818	fi
[1]	1819	else
[1491]	1820	if [[ "$ENVIRONMENT" = BATCH ]]
	1821	then
	1822	batch_job=.TRUE.
	1823	jobmo=BATCH
	1824	else
	1825	batch_job=.FALSE.
	1826	jobmo=INTERACTIVE
	1827	fi
[1]	1828	fi
	1829
[1289]	1830	# NO INTERACTIVE RUNS ALLOWED ON LCTIT
[635]	1831	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
	1832	then
	1833	printf "\n +++ no interactive runs allowed on host \"$host\" "
	1834	printf "\n please submit batch job using mrun option \"-b\" \n"
	1835	locat=normal; exit
	1836	fi
	1837
	1838
[1289]	1839	# CHECK, IF USER DEFINED A COMPILER
[1]	1840	if [[ "$compiler_name" = "" ]]
	1841	then
[82]	1842
[220]	1843	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
[82]	1844	locat=compiler_name; exit
	1845
[1]	1846	fi
	1847
	1848
[1289]	1849	# DETERMINE THE NAME OF MRUN'S TEMPORARY WORKING DIRECTORY
[1609]	1850
	1851	# ON HLRN-III, USE THE QUEUING NAME. OTHERWISE USE USERNAME AND RANDOM NUMBER
	1852	if [[ $do_batch = false && $(echo $host \| cut -c1-6) = lccray ]]
	1853	then
	1854	kennung=$(checkjob $PBS_JOBID \| grep Reservation \| cut -d" " -s -f2 \| cut -d"." -s -f2 \| sed "s/['\"]//g")
[1755]	1855	if [[ "$kennung" = "" ]]
[1753]	1856	then
	1857	kennung=$RANDOM
	1858	fi
[1609]	1859	else
	1860	kennung=$RANDOM
	1861	fi
	1862
[1]	1863	if [[ "$tmp_user_catalog" = "" ]]
	1864	then
[312]	1865	if [[ $localhost = ibmh ]]
[1]	1866	then
[312]	1867	tmp_user_catalog=$SCRATCH
[1]	1868	elif [[ $localhost = nech ]]
	1869	then
	1870	tmp_user_catalog=$WRKSHR
	1871	else
	1872	tmp_user_catalog=/tmp
	1873	fi
	1874	fi
	1875	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
	1876
	1877
[1289]	1878	# DETERMINE THE NAME OF THE DIRECTORY WHICH IS USED TO TEMPORARILY STORE DATA FOR RESTART RUNS
[1]	1879	if [[ "$tmp_data_catalog" = "" ]]
	1880	then
[622]	1881	if [[ $localhost = nech ]]
[1]	1882	then
	1883	tmp_data_catalog=$WRKSHR/mrun_restart_data
	1884	else
	1885	tmp_data_catalog=/tmp/mrun_restart_data
	1886	fi
	1887	fi
	1888
	1889
[1289]	1890	# IN CASE OF LOCAL RUNS REPLACE ENVIRONMENT VARIABLES BY THEIR VALUES
[1199]	1891	if [[ $do_remote = false && $do_compile = true \|\| $create_executable_for_batch = true ]]
[1]	1892	then
	1893	eval fopts=\"$fopts\"
	1894	eval lopts=\"$lopts\"
	1895	fi
	1896
	1897
	1898
[1289]	1899	# DETERMINE COMPILE- AND LINK-OPTIONS
[1210]	1900	fopts="$fopts $netcdf_inc $fftw_inc $dvr_inc"
	1901	lopts="$lopts $netcdf_lib $fftw_lib $dvr_lib"
[1]	1902	ROPTS="$ropts"
[1289]	1903	# if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lctit \|\| $host = lcflow \|\| $host = lcxe6 \|\| $host = lcxt5m \|\| $host = lck \|\| $host = lckiaps \|\| $host = lckordi \|\| $host = lcsb \|\| $host ) && -n $numprocs ]]
[1090]	1904	# then
[1]	1905	XOPT="-X $numprocs"
[1090]	1906	# fi
[1]	1907
	1908
	1909
[1289]	1910	# CHECK THE CPU-LIMIT. IT MUST BE GIVEN FOR BATCH-JOBS AND IS COMMUNICATED TO THE
	1911	# EXECUTABLE VIA NAMELIST-PARAMETER cputime
[1]	1912	done=false
	1913	while [[ $done = false ]]
	1914	do
	1915	cputime=$cpumax
	1916	if (( $cputime == 0 ))
	1917	then
[246]	1918	if [[ $do_batch = true ]]
	1919	then
	1920	printf "\n +++ cpu-time is undefined"
	1921	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
	1922	printf "\n >>> "
	1923	read cputime 1>/dev/null 2>&1
	1924	else
	1925	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
	1926	fi
[1]	1927	else
	1928	done=true
	1929	fi
	1930	cpumax=$cputime
	1931	done
	1932
	1933	(( minuten = cputime / 60 ))
	1934	(( sekunden = cputime - minuten * 60 ))
	1935
	1936
[1289]	1937	# CHECK THE MEMORY DEMAND
[1]	1938	if [[ $do_batch = true ]]
	1939	then
	1940	done=false
	1941	while [[ $done = false ]]
	1942	do
	1943	if (( memory == 0 ))
	1944	then
	1945	printf "\n +++ memory demand is undefined"
	1946	printf "\n >>> Please type memory in MByte per process as INTEGER:"
	1947	printf "\n >>> "
	1948	read memory 1>/dev/null 2>&1
	1949	else
	1950	done=true
	1951	fi
	1952	done
	1953	fi
	1954
	1955
[1289]	1956	# IN CASE OF REMOTE-JOBS CHECK, IF A USERNAME FOR THE REMOTE HOST IS GIVEN
[1]	1957	if [[ $do_remote = true && -z $remote_username ]]
	1958	then
	1959	while [[ -z $remote_username ]]
	1960	do
	1961	printf "\n +++ username on remote host \"$host\" is undefined"
	1962	printf "\n >>> Please type username:"
	1963	printf "\n >>> "
	1964	read remote_username
	1965	done
	1966	mc="$mc -u$remote_username"
	1967	fi
	1968
[892]	1969	# CHECK FOR INITIAL COMMANDS AFTER LOGIN
	1970	if [[ "$login_init_cmd" != "" ]]
	1971	then
	1972	export init_cmds="${login_init_cmd};"
	1973	fi
[221]	1974
[892]	1975
[1289]	1976	# SET THE MODULE-LOAD COMMAD AND EXPORT IT FOR subjob
[493]	1977	if [[ "$modules" != "" ]]
	1978	then
[678]	1979	if [[ $host = lctit ]]
	1980	then
	1981	export module_calls=". $modules"
	1982	else
	1983	export module_calls="module load ${modules};"
	1984	fi
[493]	1985	fi
	1986
[1289]	1987	# OUTPUT OF THE MRUN-HEADER
[1]	1988	calltime=$(date)
	1989	printf "\n"
[1101]	1990	printf "#------------------------------------------------------------------------# \n"
	1991	printf "\| %-35s%35s \| \n" "$version" "$calltime"
	1992	printf "\| \| \n"
[1]	1993	spalte1="called on:"; spalte2=$localhost_realname
[1101]	1994	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
[1289]	1995	if [[ $do_remote = true ]]
[1]	1996	then
[1289]	1997	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
[1]	1998	else
[1289]	1999	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
[1]	2000	fi
[1101]	2001	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
[1]	2002	if [[ -n $numprocs ]]
	2003	then
[1106]	2004	if [[ $run_coupled_model = false ]]
	2005	then
	2006	spalte1="number of PEs:"; spalte2=$numprocs
	2007	else
	2008	spalte1="number of PEs:"; spalte2="$numprocs (atmosphere: $numprocs_atmos, ocean: $numprocs_ocean)"
	2009	fi
[1101]	2010	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
[1]	2011	fi
	2012	if [[ -n $tasks_per_node ]]
	2013	then
	2014	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
[1101]	2015	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
[1279]	2016	if (( remaining_pes > 0 ))
	2017	then
	2018	spalte1=" "; spalte2="one of the nodes only filled with $remaining_pes tasks"
	2019	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
	2020	fi
[1]	2021	fi
[759]	2022	if [[ $maximum_parallel_io_streams != $numprocs ]]
	2023	then
	2024	spalte1="max par io streams:"; spalte2="$maximum_parallel_io_streams"
[1101]	2025	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
[759]	2026	fi
[622]	2027	if [[ $use_openmp = true ]]
[1]	2028	then
	2029	spalte1="threads per task:"; spalte2="$threads_per_task"
[1101]	2030	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
[1]	2031	fi
[1101]	2032	printf "\| \| \n"
[1]	2033	if [[ $do_compile = true ]]
	2034	then
[475]	2035	if [[ "$mopts" != "" ]]
	2036	then
[1101]	2037	spalte1="make options:"; spalte2=$(echo "$mopts" \| cut -c-45)
	2038	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
	2039	zeile=$(echo "$mopts" \| cut -c46-)
[475]	2040	while [[ "$zeile" != "" ]]
	2041	do
	2042	spalte1=""
[1101]	2043	spalte2=$(echo "$zeile" \| cut -c-45)
	2044	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
	2045	zeile=$(echo "$zeile" \| cut -c46-)
[475]	2046	done
	2047	fi
	2048
[1101]	2049	spalte1="cpp directives:"; spalte2=$(echo "$cpp_options" \| cut -c-45)
	2050	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
	2051	zeile=$(echo "$cpp_options" \| cut -c46-)
[1]	2052	while [[ "$zeile" != "" ]]
	2053	do
	2054	spalte1=""
[1101]	2055	spalte2=$(echo "$zeile" \| cut -c-45)
	2056	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
	2057	zeile=$(echo "$zeile" \| cut -c46-)
[1]	2058	done
	2059
[1101]	2060	spalte1="compiler options:"; spalte2=$(echo "$fopts" \| cut -c-45)
	2061	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
	2062	zeile=$(echo "$fopts" \| cut -c46-)
[1]	2063	while [[ "$zeile" != "" ]]
	2064	do
	2065	spalte1=""
[1101]	2066	spalte2=$(echo "$zeile" \| cut -c-45)
	2067	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
	2068	zeile=$(echo "$zeile" \| cut -c46-)
[1]	2069	done
	2070
[1101]	2071	spalte1="linker options:"; spalte2=$(echo "$lopts" \| cut -c-45)
	2072	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
	2073	zeile=$(echo "$lopts" \| cut -c46-)
[1]	2074	while [[ "$zeile" != "" ]]
	2075	do
	2076	spalte1=""
[1101]	2077	spalte2=$(echo "$zeile" \| cut -c-45)
	2078	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
	2079	zeile=$(echo "$zeile" \| cut -c46-)
[1]	2080	done
	2081
[1101]	2082	spalte1="modules to be load:"; spalte2=$(echo "$modules" \| cut -c-45)
	2083	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
	2084	zeile=$(echo "$modules" \| cut -c46-)
[493]	2085	while [[ "$zeile" != "" ]]
	2086	do
	2087	spalte1=""
[1101]	2088	spalte2=$(echo "$zeile" \| cut -c-45)
	2089	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
	2090	zeile=$(echo "$zeile" \| cut -c46-)
[493]	2091	done
	2092
[1101]	2093	spalte1="main program:"; spalte2=$mainprog
	2094	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
[1]	2095	else
	2096	spalte1=executable:; spalte2=$executable
[1101]	2097	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
[1]	2098	fi
[1101]	2099	printf "\| \| \n"
	2100	spalte1="base name of files:"; spalte2=$fname
	2101	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
[1]	2102	if [[ $fname != $afname ]]
	2103	then
[1101]	2104	spalte1="base name of input files:"; spalte2=$afname
	2105	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
[1]	2106	fi
[1101]	2107	spalte1="INPUT control list:"; spalte2=$(echo $input_list)
	2108	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
	2109	spalte1="OUTPUT control list:"; spalte2=$(echo $output_list)
	2110	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
[1]	2111
[1106]	2112	if [[ "$ocean_file_appendix" = true ]]
	2113	then
	2114	printf "\| %-35s%-35s \| \n" "suffix \"_O\" is added to local files" " "
	2115	fi
	2116
[1]	2117	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
	2118	then
	2119	spalte1="memory demand / PE":; spalte2="$memory MB"
[1101]	2120	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
[1]	2121	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
[1101]	2122	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
[1]	2123	fi
	2124
	2125	if [[ $do_compile = true ]]
	2126	then
[1101]	2127	printf "\| \| \n"
	2128	printf "\| Files to be compiled: \| \n"
[1]	2129	zeile=$source_list
	2130	while [[ "$zeile" != "" ]]
	2131	do
[1101]	2132	linestart=$(echo $zeile \| cut -c-70)
	2133	printf "\| %-70s \| \n" "$linestart"
	2134	zeile=$(echo "$zeile" \| cut -c71-)
[1]	2135	done
	2136	fi
[1101]	2137	printf "#------------------------------------------------------------------------#"
[1]	2138
	2139
	2140
[1289]	2141	# OUTPUT OF FILE CONNECTIONS IN CASE OF TRACEBACK
[1]	2142	if [[ $do_trace = true ]]
	2143	then
	2144	(( i = 0 ))
	2145	while (( i < iin ))
	2146	do
	2147	(( i = i + 1 ))
	2148	if (( i == 1 ))
	2149	then
	2150	printf "\n\n >>> INPUT-file assignments:\n"
	2151	fi
	2152	printf "\n ${localin[$i]} : ${absnamein[$i]}"
	2153	done
	2154	(( i = 0 ))
	2155	while (( i < iout ))
	2156	do
	2157	(( i = i + 1 ))
	2158	if (( i == 1 ))
	2159	then
	2160	printf "\n\n >>> OUTPUT-file assignments:\n"
	2161	fi
	2162	printf "\n ${localout[$i]} : ${pathout[$i]}"
	2163	done
	2164	(( i = 0 ))
	2165	while (( i < iic ))
	2166	do
	2167	(( i = i + 1 ))
	2168	if (( i == 1 ))
	2169	then
	2170	printf "\n\n >>> INPUT-commands:\n"
	2171	fi
	2172	printf "\n ${in_command[$i]}"
	2173	done
	2174	(( i = 0 ))
	2175	while (( i < ioc ))
	2176	do
	2177	(( i = i + 1 ))
	2178	if (( i == 1 ))
	2179	then
	2180	printf "\n\n >>> OUTPUT-commands:\n"
	2181	fi
	2182	printf "\n ${out_command[$i]}"
	2183	done
	2184	fi
	2185
[1289]	2186	# QUERY FOR CONTINUE (ON LOCAL MACHINES ONLY)
[1]	2187	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
	2188	then
	2189	antwort=dummy
	2190	printf "\n\n"
[1101]	2191	printf " >>> everything o.k. (y/n) ? "
	2192	while read antwort
[1]	2193	do
[1101]	2194	if [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
	2195	then
	2196	printf " >>> everything o.k. (y/n) ? "
	2197	else
	2198	break
	2199	fi
[1]	2200	done
	2201	if [[ $antwort = n \|\| $antwort = N ]]
	2202	then
	2203	locat=user_abort; (( iec = 0 )); exit
	2204	fi
	2205	if [[ $do_batch = true ]]
	2206	then
	2207	printf " >>> batch-job will be created and submitted"
	2208	else
[1289]	2209	printf " >>> MRUN will now continue to execute on this machine"
[1]	2210	fi
	2211	fi
	2212
[841]	2213
[1101]	2214	# PERFORM PARAMETER FILE CHECK (COUPLED RUNS ARE NOT SUPPORTED YET)
	2215	# DEFINE VARIABLES FOR FREQUENTLY USED DIRECTORIES
[841]	2216	check_depository="${working_directory}/trunk/UTIL"
	2217	check_sources="${working_directory}/tmp_check_namelist_files"
[818]	2218	skip_check=false
[841]	2219
[1101]	2220	# CHECK IF NAMELIST_FILE_CHECK HAS BEEN COMPILED SUCCESSFULLY
[920]	2221	if [[ ! -f $check_depository/check_namelist_files.tar ]]
[841]	2222	then
[1101]	2223	skip_check=true
	2224	reason="run on remote host or parameter file check has not been compiled."
[920]	2225	fi
	2226	if [[ ! -f $PALM_BIN/check_namelist_files.x ]]
	2227	then
[1101]	2228	skip_check=true
	2229	reason="parameter file check has not been compiled."
[892]	2230	fi
[841]	2231
[1101]	2232	# CHECK FOR PARALLEL RUN; OTHERWISE SKIP CHECK
[892]	2233	if [[ "$cond1" != "parallel" && "$cond2" != "parallel" ]]
	2234	then
[1101]	2235	skip_check=true
	2236	reason="serial run."
[841]	2237	fi
	2238
[1101]	2239	# ONLY PERFORM CHECK IF -z OPTION IS NOT SET, NO RESTART RUN IS CARRIED OUT
	2240	# AND IF THE EXECUTION HOST IS THE LOCAL HOST
	2241	# ATTENTION: THIS ROUTINE DOES NOT WORK IF THE COMPILER ON THE LOCAL HOST
	2242	# DIFFERS FROM THE COMPILER ON THE REMOTE HOST
[892]	2243	if [[ $check_namelist_files == false ]]
[807]	2244	then
[1101]	2245	skip_check=true
	2246	reason="-z option set."
[815]	2247	fi
[892]	2248
	2249	if [[ $fromhost != $localhost ]]
[815]	2250	then
[1101]	2251	skip_check=true
	2252	reason="submitting host is local host."
[892]	2253	fi
[1]	2254
[892]	2255	if [[ $run_coupled_model == true ]]
	2256	then
	2257	skip_check=true
	2258	reason="coupled run."
	2259	fi
[1]	2260
[892]	2261	if [[ $restart_run == true ]]
	2262	then
	2263	skip_check=true
	2264	reason="restart run."
	2265	fi
[807]	2266
[1101]	2267	# SKIP CHECK IN CASE OF RESTART RUN: CHECK WHETHER THE LAST CHAR IS "f" IN PARIN
[1122]	2268	(( last_char_int = `echo $filename_input \| wc -c` - 1 ))
	2269	last_char=`echo $filename_input \| cut -c $last_char_int`
[892]	2270	if [[ "$last_char" == "f" ]]
	2271	then
	2272	skip_check=true
[1069]	2273	reason="restart run."
[892]	2274	fi
[807]	2275
[892]	2276	if [[ $skip_check == false ]]
	2277	then
	2278	tmp_check=${working_directory}/tmp_check
[841]	2279
[1241]	2280	# GET TOPOGRAPHY PARAMETER FILE SUFFIX (USUALLY "_TOPO"). THIS FILE IS
[1101]	2281	# NOT NECESSARILY REQUIRED
[818]	2282	line=""
	2283	found=false
[892]	2284	grep "TOPOGRAPHY_DATA" $config_file > $tmp_check
[818]	2285	while read line1
	2286	do
	2287	line="$line1"
	2288	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	2289	then
	2290	topo_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
	2291	found=true
	2292	fi
	2293	done < $tmp_check
[807]	2294
[818]	2295	if [[ $found = false ]]
	2296	then
	2297	printf "\n +++ no TOPOGRAPHY list entry found in the configuration file."
	2298	fi
	2299
[1241]	2300	# GET NUDGING PARAMETER FILE SUFFIX (USUALLY "_NUDGE"). THIS FILE IS
	2301	# NOT NECESSARILY REQUIRED
	2302	line=""
	2303	found=false
	2304	grep "NUDGING_DATA" $config_file > $tmp_check
	2305	while read line1
	2306	do
	2307	line="$line1"
	2308	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	2309	then
	2310	nudge_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
	2311	found=true
	2312	fi
	2313	done < $tmp_check
	2314
	2315	if [[ $found = false ]]
	2316	then
	2317	printf "\n +++ no NUDGING list entry found in the configuration file."
	2318	fi
	2319
	2320	# GET LARGE SCALE FORCING PARAMETER FILE SUFFIX (USUALLY "_LSF"). THIS FILE IS
	2321	# NOT NECESSARILY REQUIRED
	2322	line=""
	2323	found=false
	2324	grep "LSF_DATA" $config_file > $tmp_check
	2325	while read line1
	2326	do
	2327	line="$line1"
	2328	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	2329	then
	2330	lsf_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
	2331	found=true
	2332	fi
	2333	done < $tmp_check
	2334
	2335	if [[ $found = false ]]
	2336	then
	2337	printf "\n +++ no LSF list entry found in the configuration file."
	2338	fi
	2339
[807]	2340	rm -rf ${working_directory}/tmp_check
	2341
[1241]	2342	# CHECK IF THE P3DF FILE MUST BE CHECKED
[807]	2343	for item in $input_list
	2344	do
[892]	2345	if [[ "$item" == "restart" ]]
[807]	2346	then
	2347	check_restart=1
	2348	else
	2349	check_restart=0
	2350	fi
	2351	done
	2352
[1101]	2353	# ERROR IF NO PARAMETER FILE WAS FOUND, OTHERWISE PROCEED
	2354	if [[ (! -f $filename_input) && ( "$filename_input" != "" ) ]]
[807]	2355	then
[920]	2356	printf "\n\n +++ ERROR: parameter file ($filename_input) not found."
[807]	2357	locat=check_namelist; exit
	2358	fi
	2359
[1101]	2360	# CHECK IF THE RESTART PARAMETER FILE EXISTS (IF NECESSARY)
[807]	2361	if [[ $check_restart == 1 ]]
	2362	then
[892]	2363
[920]	2364	filenamef="${filename_input}f"
[892]	2365	if [[ ! -f $filenamef ]]
[807]	2366	then
[892]	2367	printf "\n\n +++ WARNING: restart parameter file ($filenamef) is missing."
[807]	2368	check_restart=0
	2369	answer=dummy
	2370	printf "\n\n"
	2371
[818]	2372	if [[ $silent == false ]]
[807]	2373	then
[818]	2374	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
	2375	do
	2376	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
	2377	read answer
	2378	done
	2379	if [[ $answer = a \|\| $answer = A ]]
	2380	then
	2381	printf "\n +++ Aborting...."
	2382	locat=normal; exit
	2383	fi
[807]	2384	fi
	2385	else
	2386	check_restart=1
	2387	fi
	2388	fi
	2389
[1101]	2390	# CREATE TEMPORARY SOURCES_FOR_CHECK PATH
[807]	2391	mkdir $check_sources
	2392	cd $check_sources
	2393
[892]	2394
[1101]	2395	# CHECK FOR USER CODE, OTHERWISE USE THE PRECOMPILED CHECK_NAMELIST_FILES.X
[892]	2396	if [[ -d $add_source_path ]]
[807]	2397	then
	2398	printf "\n\n *** copying files from $check_depository"
	2399	cp $check_depository/check_namelist_files.tar ./
	2400
	2401	printf "\n\n *** untar of makefile and source files in $check_sources"
	2402	tar -xf check_namelist_files.tar > /dev/null 2>&1
	2403
	2404	printf "\n\n *** adding user code."
[892]	2405	cp $add_source_path/* ./
[807]	2406	touch check_namelist_files.f90
	2407
[1101]	2408	# GET COMPILER OPTIONS AND PERFORM MAKE
[807]	2409	printf "\n\n *** compiling code if necessary...\n"
[1045]	2410
[1101]	2411	# workaround for batch jobs on local machine (lcxe6)
[1045]	2412	if [[ $do_batch == true && $do_remote == false ]]
	2413	then
	2414	eval $init_cmds
	2415	fi
	2416
[1101]	2417	# GET CHECK OPTIONS
[1083]	2418	line=""
	2419	found=false
	2420
	2421	grep "$localhost" ${base_directory}/${config_file} \| grep "%cpp_options" > $tmp_check
	2422
	2423	while read line1
	2424	do
	2425
	2426	if [[ $(echo $line1 \| cut -d" " -s -f3-) = "$localhost" ]]
	2427	then
	2428	line="$line1"
	2429	fi
	2430
	2431	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	2432	then
[1289]	2433	# REMOVE COLONS FROM OPTION-STRING, REMOVE ALL -D OPTIONS
[1101]	2434	line="$line "
[1083]	2435	copts_check=`echo $line \| cut -d" " -s -f2 \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g' \| sed 's/-D[^ ]* //g' \| sed 's/ -D.*//g'`
	2436	found=true
	2437	fi
	2438
	2439	done < $tmp_check
	2440	copts_check="$copts_check -D__check -D__parallel"
	2441
[807]	2442	make -f Makefile_check F90=$compiler_name_ser COPT="$copts_check"
	2443
[1101]	2444	# GET MAKE OUTPUT
[807]	2445	if [[ $? != 0 ]]
	2446	then
[815]	2447	printf "\n +++ error during make."
	2448	answer=dummy
	2449	printf "\n\n"
[818]	2450	if [[ $silent == false ]]
[815]	2451	then
[818]	2452	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
	2453	do
	2454	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
	2455	read answer
	2456	done
	2457	if [[ $answer = a \|\| $answer = A ]]
	2458	then
	2459	printf "\n +++ Aborting..."
	2460	rm -rf $check_sources
	2461	locat=normal; exit
	2462	else
	2463	skip_check=true
	2464	fi
[815]	2465	else
	2466	skip_check=true
	2467	fi
[807]	2468	fi
	2469	else
	2470	cp $PALM_BIN/check_namelist_files.x ./
	2471	fi
	2472
[920]	2473	cp $filename_input ./PARIN
[807]	2474	if [[ $check_restart == 1 ]]
	2475	then
[892]	2476	cp $filenamef ./PARINF
[807]	2477	fi
	2478
[892]	2479	if [[ -f ${pathname}/${fname}${topo_suffix} && $skip_check == false ]]
[818]	2480	then
	2481	printf "\n *** adding topography data"
[892]	2482	cp ${pathname}/${fname}${topo_suffix} ./TOPOGRAPHY_DATA
[818]	2483
[1101]	2484	# IN CASE OF TOPOGRAPHY AND HIGH GRID POINT NUMBERS, THE STACK SIZE
	2485	# MUST BE INCREASED. THIS IS DUE TO THE ARRAY nzb_local AND topo_height,
	2486	# WHICH REQUIRE SUFFICIENT MEMORY
[818]	2487	ulimit -s unlimited
	2488	fi
	2489
[1241]	2490	if [[ -f ${pathname}/${fname}${nudge_suffix} && $skip_check == false ]]
	2491	then
	2492	printf "\n *** adding nudging data"
	2493	cp ${pathname}/${fname}${nudge_suffix} ./NUDGING_DATA
	2494	fi
	2495
	2496	if [[ -f ${pathname}/${fname}${lsf_suffix} && $skip_check == false ]]
	2497	then
	2498	printf "\n *** adding large scale forcing data"
	2499	cp ${pathname}/${fname}${lsf_suffix} ./LSF_DATA
	2500	fi
	2501
[1101]	2502	# CREATE ENVPAR FILE, WHICH IS NEEDED BY CHECK_NAMELIST_FILES.X
[807]	2503	cat > ENVPAR << %%END%%
[823]	2504	&envpar run_identifier = '$fname', host = '$host',
[807]	2505	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
	2506	maximum_parallel_io_streams = $maximum_parallel_io_streams,
	2507	maximum_cpu_time_allowed = ${cpumax}.,
	2508	revision = '$global_revision',
	2509	local_dvrserver_running = $local_dvrserver_running /
	2510
	2511	%%END%%
	2512
[1101]	2513	# SAFETY CHECK: ONLY PROCEED IF THE PARAMETER CHECK PROGRAM WAS PROPERLY COMPILED
	2514	if [[ ! -f check_namelist_files.x && $skip_check == false ]]
	2515	then
[807]	2516	printf "\n +++ WARNING: check_namelist_files.x not found."
	2517	answer=dummy
	2518	printf "\n\n"
[818]	2519
	2520	if [[ $silent == false ]]
[807]	2521	then
[818]	2522	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
	2523	do
	2524	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
	2525	read answer
	2526	done
	2527	if [[ $answer = a \|\| $answer = A ]]
	2528	then
	2529	printf "\n +++ Aborting..."
	2530	rm -rf $check_sources
	2531	locat=normal; exit
	2532	else
[1101]	2533	printf "\n *** skipping parameter file check."
[818]	2534	fi
	2535	fi
	2536
[815]	2537	elif [[ $skip_check == false ]]
	2538	then
[1101]	2539	# STARTING THE PARAMETER FILE CHECK
[807]	2540	printf "\n\n *** starting parameter file check..."
	2541
[1101]	2542	# CHECKING THE P3D FILE
[920]	2543	printf "\n\n (1) checking $filename_input"
[931]	2544	echo "$numprocs 0 0" > VARIN
[807]	2545	errors=`./check_namelist_files.x < VARIN 2>&1`
	2546
	2547	check_error=false
	2548	if [[ "$errors" == "" ]]
	2549	then
	2550	printf " --> o.k."
	2551	else
	2552	printf " --> failed."
	2553	check_error=true
	2554	printf "\n\n $errors"
	2555	fi
	2556
[1101]	2557	# CHECKING THE PD3F FILE IF NECESSARY
[807]	2558	if [[ $check_restart == 1 && $check_error == false ]]
	2559	then
[892]	2560	printf "\n\n (2) checking $filenamef"
[807]	2561
[1101]	2562	# FIRST CHECK IF INITIALIZING_ACTIONS="READ_RESTART_DATA" IS SET
	2563	# IN &INIPAR LIST
[807]	2564	found=false
[1101]	2565	cat PARINF \| while read line
[807]	2566	do
	2567	line=$(echo $line\|sed 's/ //g')
	2568	if [[ $line == "&inipar" ]]
	2569	then
	2570	start_search=true
	2571	fi
	2572
	2573	if [[ $start_search == true ]]
	2574	then
	2575	if [[ $line == "initializing_actions='read_restart_data'" ]]
	2576	then
	2577	found=true
	2578	break
	2579	fi
	2580	fi
	2581
	2582	if [[ $line == "/" ]]
	2583	then
	2584	start_search=false
	2585	fi
	2586
	2587	done
	2588
	2589	if [[ $found = false ]]
	2590	then
	2591	printf "\n\n +++ ERROR: initializing_actions = 'read_restart_data' not found"
	2592	printf "\n in &inipar list in $fname$p3df_suffix."
	2593	rm -rf $check_sources
	2594	locat=check_namelist; exit
	2595	fi
	2596
[1101]	2597	# READ max_user_pr FROM FILES
[931]	2598	if [[ -f parin_for_check ]]
	2599	then
	2600	read max_pr_user < parin_for_check
	2601	else
	2602	max_user_pr=0
	2603	fi
	2604
	2605	echo "$numprocs 1 $max_pr_user" > VARIN
[807]	2606	errors=`./check_namelist_files.x < VARIN 2>&1`
	2607
	2608	if [[ "$errors" == "" ]]
	2609	then
	2610	printf " --> o.k."
	2611	else
	2612	printf " --> failed."
	2613	check_error=true
	2614	printf "\n\n $errors"
	2615	fi
	2616	fi
	2617
[1101]	2618	# REPORT ERRORS AND CONTINUE/EXIT
[807]	2619	if [[ $check_error == true ]]
	2620	then
	2621	printf "\n +++ errors found in the parameter file!\n"
	2622	answer=dummy
	2623	printf "\n\n"
	2624
	2625	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
	2626	do
[1101]	2627	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
	2628	read answer
[807]	2629	done
	2630
	2631	if [[ $answer = a \|\| $answer = A ]]
	2632	then
	2633	printf "\n +++ Aborting..."
	2634	rm -rf $check_sources
	2635	locat=normal; exit
	2636	fi
	2637	else
	2638	printf "\n\n *** parameter file(s) seem(s) to be o.k.\n"
	2639	fi
	2640	rm -rf $check_sources
	2641	fi
	2642	else
[1103]	2643	printf "\n\n +++ skipping parameter file check due to following reason: $reason \n"
[807]	2644	fi
	2645
[818]	2646	# DELETE TEMPORARY DIRECTORY AND FINISH NAMELIST FILE CHECK
	2647	rm -rf $check_sources
[807]	2648	cd $working_directory
	2649
[1199]	2650	# DETERMINE PATH FOR MAKE DEPOSITORY
	2651	if [[ $do_batch = false \|\| $create_executable_for_batch = true ]]
	2652	then
	2653
	2654	line=""
	2655	grep "%depository_path" $config_file > tmp_mrun
	2656	while read line
	2657	do
	2658	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	2659	then
	2660	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
	2661	then
	2662	global_depository_path=`echo $line \| cut -d" " -s -f2`
	2663	fi
	2664	fi
	2665	done < tmp_mrun
	2666
	2667	line=""
	2668	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
	2669	while read line
	2670	do
	2671	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	2672	then
	2673	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
	2674	then
	2675	local_depository_path=`echo $line \| cut -d" " -s -f2`
	2676	fi
	2677	fi
	2678	done < tmp_mrun
	2679
	2680	if [[ "$local_depository_path" = "" ]]
	2681	then
	2682	if [[ "$global_depository_path" != "" ]]
	2683	then
	2684	local_depository_path=$global_depository_path
	2685	else
	2686	printf "\n\n +++ no depository path found in configuration file"
	2687	printf "\n for local host \"$localhost\" "
	2688	printf "\n please set \"\%depository_path\" in configuration file\n"
	2689	locat=config_file; exit
	2690	fi
	2691	fi
	2692	eval local_depository_path=$local_depository_path
	2693	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
	2694	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
	2695
	2696
	2697	basename=`echo $mainprog \| cut -f1 -d"."`
	2698	eval make_depository=${local_depository_path}/${basename}_current_version.tar
	2699	if [[ ! -f $make_depository ]]
	2700	then
	2701	printf "\n"
	2702	printf "\n *** WARNING: make depository \"$make_depository\" not found"
	2703	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
	2704	fi
	2705
	2706	fi
	2707
	2708
[1289]	2709	# NOW PERFORM THOSE ACTIONS REQUIRED TO EXECUTE THE PROGRAM (PALM) ON THIS MACHINE
	2710	# (COMPILING/LINKING, EXECUTING, COPYING I/O FILES)
[1]	2711	if [[ $do_batch = false ]]
	2712	then
	2713
	2714
[1289]	2715	# CREATE THE TEMPORARY WORKING DIRECTORY
[1]	2716	mkdir -p $TEMPDIR
	2717	chmod go+rx $TEMPDIR
	2718	tmpcreate=true
	2719
	2720
[1289]	2721	# COPY EITHER THE COMPLETE SOURCE CODE FILES TO BE COMPILED OR THE EXECUTABLE
	2722	# INTO THE TEMPORARY WORKING DIRECTORY
[1]	2723	if [[ $do_compile = true ]]
	2724	then
	2725
	2726	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
	2727	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
	2728	if [[ $localhost = nech ]]
	2729	then
	2730	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
	2731	if mkdir -p $TEMPDIR_COMPILE
	2732	then
	2733	printf "\n *** \"$TEMPDIR_COMPILE\" "
	2734	printf "\n is generated as temporary directory for cross compiling\n"
	2735	else
	2736	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
	2737	printf "\n needed for cross compilation failed"
	2738	locat=compile
	2739	exit
	2740	fi
	2741	else
	2742	TEMPDIR_COMPILE=$TEMPDIR
	2743	fi
	2744
[1199]	2745	cp $make_depository $TEMPDIR_COMPILE
	2746	cd $TEMPDIR_COMPILE
	2747	tar -xf $make_depository > /dev/null 2>&1
	2748	cd - > /dev/null
[1]	2749
[1255]	2750	# DUE TO UNKNOWN REASONS, COPY WITH cp COMMAND CREATES CORRUPT
	2751	# FILES ON CRAY XC30 SYSTEMS (HLRN III), rsync IS USED INSTEAD
[1281]	2752	if [[ $(echo $host \| cut -c1-6) = lccray ]]
	2753	then
	2754	rsync -av -t SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE > /dev/null
	2755	else
	2756	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE > /dev/null
	2757	fi
[82]	2758
[1]	2759	else
[475]	2760
[1]	2761	cp $executable ${TEMPDIR}/a.out
[475]	2762
[1]	2763	fi
	2764
	2765
[1289]	2766	# CHANGE TO THE TEMPORARY WORKING DIRECTORY
[475]	2767	cd $TEMPDIR
[1]	2768	printf "\n *** changed to temporary directory: $TEMPDIR"
	2769
	2770
[1289]	2771	# THE FOLLOWING IS REQUIRED FPR AVS-OUTPUT WITH PALM ??? REMOVE ???
	2772	# WRITE INFORMATIONS ABOUT THE OUTPUT-FILE CONNECTIONS TO A TEMPORARY FILE
	2773	# THIS FILE CAN LATER BE READ FROM USER-DEFINED CODE TO DETERMINE THE
	2774	# RELATION BETWEEN THE LOCAL TEMPORARY AND PERMANENT FILE NAMES
[1]	2775	(( i = 0 ))
	2776	while (( i < iout ))
	2777	do
	2778	(( i = i + 1 ))
	2779	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
	2780	then
	2781	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
	2782	else
	2783	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
	2784	fi
	2785	done
	2786
	2787
[1289]	2788	# IF REQUIRED, START WITH COMPILING
[1]	2789	if [[ $do_compile = true ]]
	2790	then
	2791
	2792
[1199]	2793	if [[ -f a.out ]]
[475]	2794	then
[82]	2795
[1199]	2796	# EXECUTABLE WAS CREATED DURING INTERACTIVE CALL OF MRUN
	2797	printf "\n\n\n *** executable a.out found"
	2798	printf "\n no compilation required \n"
	2799
[1]	2800	else
[807]	2801
[1199]	2802	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
[1289]	2803	printf "\n\n\n *** compilation starts \n$dashes\n"
[1199]	2804	printf " *** compilation with make using following options:\n"
	2805	printf " make depository: $make_depository"
	2806	if [[ "$mopts" != "" ]]
	2807	then
	2808	printf " make options: $mopts\n"
	2809	fi
	2810	printf " compilername: $compiler_name\n"
	2811	printf " compiler options: $fopts\n"
	2812	printf " preprocessor directives: $cpp_options \n"
	2813	printf " linker options: $lopts \n"
	2814	if [[ "$modules" != "" ]]
	2815	then
	2816	printf " modules to be load: $modules \n"
	2817	fi
	2818	printf " source code files: $source_list \n"
[1]	2819
[1199]	2820	if [[ $localhost = nech ]]
	2821	then
	2822	ssh $SSH_PORTOPT 136.172.44.192 -l $usern "$init_cmds $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
	2823	cp $TEMPDIR_COMPILE/a.out .
	2824	[[ $? != 0 ]] && compile_error=true
	2825	rm -rf $TEMPDIR_COMPILE
	2826	elif [[ $localhost = ibmh ]]
	2827	then
	2828	printf " compiler is called via ssh on \"plogin1\" \n"
	2829	ssh $SSH_PORTOPT plogin1 -l $usern "$init_cmds export PATH=/sw/ibm/xlf/13.1.0.8/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
	2830	[[ ! -f a.out ]] && compile_error=true
[1289]	2831	continue # STATUS=1, IF a.out EXISTS
[1199]	2832	elif [[ $localhost = lcflow ]]
	2833	then
	2834	printf " compiler is called via ssh on \"flow\" \n"
[1201]	2835	/usr/bin/ssh $SSH_PORTOPT flow02.hpc.uni-oldenburg.de -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
[1272]	2836	check_for_file=`/usr/bin/ssh $SSH_PORTOPT flow02.hpc.uni-oldenburg.de -l $usern "ls $TEMPDIR/a.out 2> /dev/null"`
	2837	[[ "$check_for_file" = "" ]] && compile_error=true
[1289]	2838	continue # STATUS=1, IF a.out EXISTS
[1620]	2839	elif [[ $localhost = lcbullhh \|\| $localhost = lccrayb \|\| $localhost = lccrayf \|\| $localhost = lccrayh ]]
[1199]	2840	then
	2841	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
	2842	else
	2843	[[ "$init_cmds" != "" ]] && eval $init_cmds
	2844	[[ "$module_calls" != "" ]] && eval $module_calls
	2845	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
	2846	fi
[181]	2847
[1199]	2848	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
	2849	then
	2850	printf "\n +++ error occured while compiling or linking"
	2851	locat=compile
	2852
[181]	2853	exit
[1199]	2854	else
[1289]	2855	printf "$dashes\n *** compilation finished \n"
[1199]	2856	fi
	2857
[1]	2858	fi
[1199]	2859
[1]	2860	fi
	2861
	2862
[1289]	2863	# PROVIDE THE INPUT FILES
	2864	# LOOP OVER ALL ACTIVATED FILES (LISTED IN THE CONFIGURATION FILE)
[1]	2865	(( i = 0 ))
	2866	while (( i < iin ))
	2867	do
	2868	(( i = i + 1 ))
	2869	if (( i == 1 ))
	2870	then
[1289]	2871	printf "\n\n *** providing INPUT-files:\n$dashes"
[1]	2872	fi
	2873
	2874
[1289]	2875	# SKIP OPTIONAL FILES, IF THEY DO NOT EXIST
[1]	2876	if [[ "${transin[$i]}" = unavailable ]]
	2877	then
	2878	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
	2879	then
	2880	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
	2881	printf "\n is not available!"
	2882	else
	2883	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
	2884	printf "\n is not available!"
	2885	fi
	2886	continue
	2887	fi
	2888
[1289]	2889	# CHECK FOR SINGLE FILE (SERIAL RUN) OR DIRECTORY (ONE FILE PER CORE FOR PARELLEL EXECUTION)
[1]	2890	files_for_pes=false; datentyp=file
	2891	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
	2892	then
	2893	files_for_pes=true; datentyp=directory
	2894	actionin[$i]=""
	2895	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
	2896	then
	2897	actionin[$i]=""
	2898	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
	2899	then
	2900	files_for_pes=true; datentyp=directory
	2901	actionin[$i]="ar"
	2902	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
	2903	then
	2904	actionin[$i]="ar"
	2905	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
	2906	then
	2907	files_for_pes=true; datentyp=directory
	2908	actionin[$i]="fl"
	2909	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
	2910	then
	2911	actionin[$i]="fl"
	2912	fi
	2913
	2914	if [[ $files_for_pes = true ]]
	2915	then
	2916	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
	2917	else
	2918	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
	2919	fi
	2920
[1289]	2921	# INPUT-FILE FOR A RESTART RUN.
	2922	# CHECK, IF THIS FILE STILL EXISTS ON THE TEMPORARY DATA DIRECTORY.
	2923	# IF NOT, TRY TO GET IT FROM THE ARCHIVE SYSTEM
[1]	2924	if [[ "${actionin[$i]}" = fl ]]
	2925	then
	2926	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
	2927	if [[ $files_for_pes = false ]]
	2928	then
	2929	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
	2930	then
	2931	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
	2932	got_tmp[$i]=true
	2933	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
	2934	then
	2935	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
	2936	printf "\n *** trying to use backup copy in \"$WORK\" "
	2937	cp $WORK/${frelin[$i]} ${localin[$i]}
	2938	else
	2939	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
	2940	printf "\n or \"$tmp_data_catalog\" does not exist!"
	2941	printf "\n *** trying to get copy from archive"
	2942	actionin[$i]=ar
	2943	fi
	2944	else
	2945	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
	2946	then
	2947	mkdir ${localin[$i]}
[149]	2948	cd $tmp_data_catalog/${frelin[$i]}
	2949	for file in $(ls *)
	2950	do
	2951	ln $file $TEMPDIR/${localin[$i]}
	2952	done
	2953	cd $TEMPDIR
[1]	2954	got_tmp[$i]=true
	2955	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
	2956	then
	2957	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
	2958	printf "\n *** trying to use backup copy in \"$WORK\" "
	2959	cp -r $WORK/${frelin[$i]} ${localin[$i]}
	2960	else
	2961	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
	2962	printf "\n or \"$tmp_data_catalog\" does not exist!"
	2963	printf "\n *** trying to get copy from archive"
	2964	actionin[$i]=ar
	2965	fi
	2966	fi
	2967	fi
	2968
	2969
[1289]	2970	# FILE IS STORED ON THE ARCHIVE SYSTEM
[1]	2971	if [[ "${actionin[$i]}" = ar ]]
	2972	then
	2973
	2974	if [[ $files_for_pes = false ]]
	2975	then
	2976	printf "\n file will be restored from archive-system ($archive_system)!"
	2977	else
	2978	printf "\n directory will be restored from archive-system ($archive_system)!"
	2979	fi
	2980
	2981	file_restored=false
	2982
	2983	if [[ $archive_system = asterix ]]
	2984	then
	2985	do_stagein=true
	2986	(( stagein_anz = 0 ))
	2987	while [[ $do_stagein = true ]]
	2988	do
	2989	if [[ $files_for_pes = false ]]
	2990	then
	2991	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
	2992	else
	2993	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
	2994	fi
	2995	cat STAGEIN_OUTPUT
	2996	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
	2997	then
	2998	file_restored=true
	2999	do_stagein=false
	3000	else
	3001	(( stagein_anz = stagein_anz + 1 ))
	3002	if (( stagein_anz == 10 ))
	3003	then
	3004	printf "\n +++ stagein stoped after 10 tries"
	3005	locat=stage
	3006	exit
	3007	fi
	3008	printf "\n +++ restoring from archive failed, trying again:"
	3009	sleep 900
	3010	fi
	3011	done
	3012	elif [[ $archive_system = DMF ]]
	3013	then
	3014	if [[ $files_for_pes = false ]]
	3015	then
	3016	printf "\n +++ restoring of single files impossible with $archive_system !\n"
	3017	locat=DMF
	3018	exit
	3019	else
	3020	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
	3021	cp -r $ARCHIVE/${frelin[$i]} $PWD
	3022	file_restored=true
	3023	fi
	3024	elif [[ $archive_system = tivoli ]]
	3025	then
	3026	if [[ $files_for_pes = false ]]
	3027	then
[1289]	3028	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
[1]	3029	else
	3030	(( inode = 0 ))
	3031	while (( inode < nodes ))
	3032	do
[1289]	3033	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
[1]	3034	(( inode = inode + 1 ))
	3035	done
	3036	fi
	3037	file_restored=true
	3038	elif [[ $archive_system = ut ]]
	3039	then
	3040	if [[ $files_for_pes = false ]]
	3041	then
	3042	cp $UT/${frelin[$i]} .
	3043	else
	3044	(( inode = 0 ))
	3045	while (( inode < nodes ))
	3046	do
	3047	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
	3048	(( inode = inode + 1 ))
	3049	done
	3050	fi
	3051	file_restored=true
	3052	else
	3053	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
	3054	locat=rearchive
	3055	exit
	3056	fi
	3057
	3058	if [[ $file_restored = true ]]
	3059	then
	3060
[1289]	3061	# PUT FILE ON THE TEMPORARY DATA DIRECTORY TOO.
	3062	# THIS WILL MAKE FILE ACCESS EASIER FOR LATER RUNS
[1]	3063	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
	3064	if [[ $files_for_pes = false ]]
	3065	then
	3066	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
	3067	else
	3068	mkdir $tmp_data_catalog/${frelin[$i]}
	3069	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
	3070	fi
	3071	got_tmp[$i]=true
	3072
[1289]	3073	# PROVIDE THE FILE UNDER ITS LOCAL NAME
[1]	3074	mv ${frelin[$i]} ${localin[$i]}
	3075
	3076	fi
	3077	fi
	3078
	3079
[1289]	3080	# FILE IS STORED IN THE RESPECTIVE DIRECTORY GIVEN IN THE CONFIGURATION FILE
[1]	3081	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
	3082	then
	3083
	3084	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
	3085	then
	3086
[1289]	3087	# FILE COPIES ARE PROVIDED FOR ALL CORES
	3088	# EACH FILE GETS A UNIQUE FILENAME WITH A FOUR DIGIT NUMBER
[1]	3089	printf "\n file will be provided for $numprocs processors"
	3090	mkdir ${localin[$i]}
	3091	ival=$numprocs
	3092	(( ii = 0 ))
	3093	while (( ii <= ival-1 ))
	3094	do
	3095	if (( ii < 10 ))
	3096	then
	3097	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
	3098	elif (( ii < 100 ))
	3099	then
	3100	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
	3101	elif (( ii < 1000 ))
	3102	then
	3103	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
	3104	else
	3105	cp ${absnamein[$i]} ${localin[$i]}/_$ii
	3106	fi
	3107	(( ii = ii + 1 ))
	3108	done
	3109
	3110	else
	3111
	3112	if [[ $files_for_pes = true ]]
	3113	then
	3114
[1289]	3115	# PROVIDE FILES FOR EACH CORE
	3116	# FIRST CREATE THE LOCAL DIRECTORY, THEN COPY FILES
	3117	# FROM THE PERMANENT DIRECTORY BY LINKING THEM TO THE LOCAL ONE
[1]	3118	printf "\n providing $numprocs files for the respective processors"
	3119	mkdir ${localin[$i]}
[183]	3120	if [[ $link_local_input = true ]]
	3121	then
	3122	printf " using ln -f\n"
	3123	cd ${absnamein[$i]}
	3124	for file in $(ls *)
	3125	do
	3126	ln -f $file ${localin[$i]}
	3127	done
	3128	cd $TEMPDIR
	3129	fi
[1289]	3130
	3131	# IF "ln -f" FAILED OR IF "$link_local_input = false" DO A NORMAL "cp -r"
[183]	3132	if [[ ! -f "${localin[$i]}/_0000" ]]
	3133	then
	3134	if [[ $link_local_input = true ]]
	3135	then
	3136	printf " ln failed for .../_0000, using cp...\n"
	3137	fi
	3138	cp -r ${absnamein[$i]}/* ${localin[$i]}
	3139	fi
[1]	3140
	3141	else
[1289]	3142
	3143	# PROVIDE FILE FOR RUNS ON A SINGLE CORE
[183]	3144	if [[ $link_local_input = true ]]
	3145	then
	3146	printf " using ln -f\n"
	3147	ln -f ${absnamein[$i]} ${localin[$i]}
	3148	fi
	3149	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
	3150	if [[ ! -f "${localin[$i]}" ]]
	3151	then
	3152	if [[ $link_local_input = true ]]
	3153	then
	3154	printf " ln failed, using cp...\n"
	3155	fi
	3156	cp ${absnamein[$i]} ${localin[$i]}
	3157	fi
[1]	3158	fi
	3159	fi
	3160	fi
	3161
	3162	done
	3163	if (( i != 0 ))
	3164	then
[1289]	3165	printf "\n$dashes\n *** all INPUT-files provided \n"
[1]	3166	fi
	3167
	3168
[1289]	3169	# EXECUTE INPUT-COMMANDS GIVEN IN THE CONFIGURATION FILE
[1]	3170	(( i = 0 ))
	3171	while (( i < iic ))
	3172	do
	3173	(( i = i + 1 ))
	3174	if (( i == 1 ))
	3175	then
[1289]	3176	printf "\n\n *** execution of INPUT-commands:\n$dashes"
[1]	3177	fi
	3178	printf "\n >>> ${in_command[$i]}"
	3179	eval ${in_command[$i]}
	3180	if (( i == iic ))
	3181	then
[1289]	3182	printf "\n$dashes\n"
[1]	3183	fi
	3184	done
	3185
	3186
[1289]	3187	# SET THE REMAINING CPU-TIME
[1]	3188	cpurest=${cpumax}.
	3189
	3190
[260]	3191	# START DVR STREAMING SERVER
	3192	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
	3193	then
	3194	if [[ "$dvr_server" != "" ]]
	3195	then
	3196
	3197	printf "\n\n *** preparing the dvr streaming server configuration file"
	3198
[1289]	3199	# CHECK, IF A DVR SERVER IS ALREADY RUNNING
[260]	3200	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
	3201	if [[ "$running_dvrserver_id" != "" ]]
	3202	then
	3203
[261]	3204	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
[260]	3205	printf "\n This server is used instead starting a new one!"
[261]	3206	printf "\n If required, script \"process_dvr_output\" has to be run manually."
[260]	3207
	3208	else
	3209
	3210	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
	3211	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
	3212	then
	3213	cp ${PALM_BIN}/.dvrserver.config .
	3214
[1289]	3215	# ENTERING THE BASEDIR, UID AND GID INTO THIS FILE
[260]	3216	user_id=`id -u`
	3217	group_id=`id -g`
[1289]	3218
	3219	# "&" IS REQUIRED AS A SEPERATOR, BECAUSE TEMPDIR CONTAINS "/"
[260]	3220	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
	3221	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
	3222	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
	3223	mv .dvrserver.3 .dvrserver.config
	3224	rm .dvrserver.1 .dvrserver.2
	3225
[1289]	3226	# START DVR SERVER IN BACKGROUND, GET HIS ID AND PRINT ON TERMINAL
[260]	3227	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
	3228	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
	3229	printf "\n *** streaming server with id=$dvrserver_id is started in background"
	3230	local_dvrserver_running=.TRUE.
	3231	else
	3232	printf "\n +++ missing file \".dvrserver.config\" in directory:"
	3233	printf "\n \"$PALM_BIN\" "
	3234	locat=dvr
	3235	exit
	3236	fi
	3237
	3238	fi
	3239
	3240	else
	3241	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
	3242	fi
	3243	fi
	3244
	3245
[1289]	3246	# CREATE THE NAMELIST-FILE WITH VALUES OF ENVIRONMENT-VARIABLES REQUIRED BY PALM
	3247	# (FILE ENVPAR WILL BE READ BY PALM)
[260]	3248	cat > ENVPAR << %%END%%
	3249	&envpar run_identifier = '$fname', host = '$localhost',
	3250	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
[759]	3251	maximum_parallel_io_streams = $maximum_parallel_io_streams,
[260]	3252	maximum_cpu_time_allowed = ${cpumax}.,
	3253	revision = '$global_revision',
[1402]	3254	local_dvrserver_running = $local_dvrserver_running,
	3255	batch_job = $batch_job /
[260]	3256
	3257	%%END%%
	3258
	3259
[1289]	3260	# STARTING THE EXECUTABLE
	3261	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$dashes\n"
[1]	3262	PATH=$PATH:$TEMPDIR
	3263
[1289]	3264	# MPI DEBUG OPTION (ARGUMENT CHECKING, SLOWS DOWN EXECUTION DUE TO INCREASED LATENCY)
[359]	3265	if [[ "$mpi_debug" = true ]]
	3266	then
	3267	export MPI_CHECK_ARGS=1
	3268	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
	3269	fi
	3270
[693]	3271	if [[ "$totalview" = true ]]
	3272	then
	3273	printf "\n *** totalview debugger will be used"
	3274	tv_opt="-tv"
	3275	else
	3276	tv_opt=""
	3277	fi
	3278
[1]	3279	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
	3280	then
[1549]	3281
	3282	#Interactive ALLINEA DEBUG seesion
	3283	if [[ "$ENVIRONMENT" != BATCH ]]
	3284	then
	3285	if [[ $host = lccrayb \|\| $host = lccrayh ]]
	3286	then
	3287	if [[ "$allinea" = true ]]
	3288	then
	3289	echo "--- aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos"
	3290
	3291	ddt aprun -n $ii -N $tasks_per_node a.out $ROPTS
	3292	wait
	3293	fi
	3294	fi
	3295	fi
	3296
[1]	3297	if [[ "$ENVIRONMENT" = BATCH ]]
	3298	then
[1289]	3299	continue
[1]	3300	fi
[1096]	3301	if [[ $localhost = ibmh ]]
[1]	3302	then
	3303
	3304	# SETUP THE IBM MPI ENVIRONMENT
	3305	export MP_SHARED_MEMORY=yes
	3306	export AIXTHREADS_SCOPE=S
	3307	export OMP_NUM_THREADS=$threads_per_task
	3308	export AUTHSTATE=files
	3309	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
	3310
	3311	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
	3312	export MP_ADAPTER_USE=shared
	3313	export MP_CPU_USE=multiple
	3314	export MP_TIMEOUT=1200
	3315
	3316	unset MP_TASK_AFFINITY
	3317
	3318	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
	3319	#(( ii = 1 ))
	3320	#while (( ii <= $numprocs ))
	3321	#do
	3322	# echo $localhost_realname >> hostfile
	3323	# (( ii = ii + 1 ))
	3324	#done
	3325	#export MP_HOSTFILE=hostfile
	3326
	3327	if [[ "$LOADLBATCH" = yes ]]
	3328	then
	3329	totalview poe a.out $ROPTS
	3330	else
	3331	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
	3332	export TVDSVRLAUNCHCMD=ssh
	3333	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
	3334	fi
[622]	3335
[1295]	3336	fi # END DEBUG MODE
	3337
[1]	3338	else
[622]	3339
[1289]	3340	# NORMAL EXECUTION
[1]	3341	if [[ -n $numprocs ]]
	3342	then
[1289]	3343
[1]	3344	# RUNNING THE PROGRAM ON PARALLEL MACHINES
	3345	if [[ $(echo $host \| cut -c1-3) = ibm ]]
	3346	then
[1289]	3347
[1]	3348	# SETUP THE IBM MPI ENVIRONMENT
[693]	3349	if [[ $host != ibmh && $host != ibmkisti ]]
[312]	3350	then
	3351	export MP_SHARED_MEMORY=yes
	3352	export AIXTHREAD_SCOPE=S
	3353	export OMP_NUM_THREADS=$threads_per_task
	3354	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
	3355	export AUTHSTATE=files
	3356	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
	3357	# export MP_PRINTENV=yes
[1]	3358
[1289]	3359	# TUNING-VARIABLES TO IMPROVE COMMUNICATION SPEED
	3360	# DO NOT SHOW SIGNIFICANT EFFECTS (SEP 04, FEDERATION-SWITCH)
[312]	3361	export MP_WAIT_MODE=poll
	3362	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
	3363	fi
[693]	3364
	3365	if [[ $host = ibmkisti ]]
	3366	then
	3367	export LANG=en_US
	3368	export MP_SHARED_MEMORY=yes
[696]	3369	if [[ $threads_per_task = 1 ]]
	3370	then
	3371	export MP_SINGLE_THREAD=yes
	3372	export MEMORY_AFFINITY=MCM
	3373	else
	3374	export OMP_NUM_THREADS=$threads_per_task
	3375	fi
[693]	3376	fi
	3377
[1]	3378	if [[ "$LOADLBATCH" = yes ]]
	3379	then
	3380	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
	3381	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
	3382	then
[102]	3383	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
[1]	3384	else
[343]	3385	if [[ $run_coupled_model = false ]]
	3386	then
	3387	if [[ "$ocean_file_appendix" = true ]]
	3388	then
	3389	echo "precursor_ocean" > runfile_atmos
	3390	else
	3391	echo "precursor_atmos" > runfile_atmos
	3392	fi
	3393	else
	3394	(( iia = $numprocs_atmos / $threads_per_task ))
	3395	(( iio = $numprocs_ocean / $threads_per_task ))
	3396	printf "\n coupled run ($iia atmosphere, $iio ocean)"
	3397	printf "\n using $coupled_mode coupling"
	3398	printf "\n\n"
	3399	echo "coupled_run $iia $iio" > runfile_atmos
	3400	fi
	3401	poe ./a.out $ROPTS < runfile_atmos
[1]	3402	fi
	3403	else
[622]	3404	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
[1]	3405	then
[102]	3406	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
[1289]	3407	elif [[ $localhost = ibmkisti \|\| $localhost = ibmku ]]
[1]	3408	then
	3409	if [[ -f $hostfile ]]
	3410	then
	3411	cp $hostfile hostfile
	3412	else
	3413	(( ii = 1 ))
	3414	while (( ii <= $numprocs ))
	3415	do
	3416	echo $localhost_realname >> hostfile
	3417	(( ii = ii + 1 ))
	3418	done
	3419	fi
	3420	export MP_HOSTFILE=hostfile
[331]	3421	if [[ $run_coupled_model = false ]]
	3422	then
	3423	if [[ "$ocean_file_appendix" = true ]]
	3424	then
	3425	echo "precursor_ocean" > runfile_atmos
	3426	else
	3427	echo "precursor_atmos" > runfile_atmos
	3428	fi
	3429	else
	3430	(( iia = $numprocs_atmos / $threads_per_task ))
	3431	(( iio = $numprocs_ocean / $threads_per_task ))
	3432	printf "\n coupled run ($iia atmosphere, $iio ocean)"
	3433	printf "\n using $coupled_mode coupling"
	3434	printf "\n\n"
	3435	echo "coupled_run $iia $iio" > runfile_atmos
	3436	fi
	3437
[1289]	3438	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
	3439
[1]	3440	else
	3441	if [[ "$host_file" = "" ]]
	3442	then
	3443	printf "\n +++ no hostfile given in configuration file"
	3444	locat=config_file
	3445	exit
	3446	else
	3447	eval host_file=$host_file
	3448	fi
	3449	export MP_HOSTFILE=$host_file
[102]	3450	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
[1]	3451	fi
	3452	fi
[1289]	3453	elif [[ $host = nech ]]
[1]	3454	then
	3455	(( ii = nodes ))
	3456	if [[ $ii = 1 ]]
	3457	then
	3458	export F_ERRCNT=0 # acceptable number of errors before program is stopped
	3459	export MPIPROGINF=YES
[61]	3460	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
[1]	3461	echo "*** execution on single node with mpirun"
[102]	3462	mpirun -np $numprocs ./a.out $ROPTS
[1]	3463	else
	3464	(( i = 0 ))
	3465	while (( i < ii ))
	3466	do
	3467	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
	3468	(( i = i + 1 ))
	3469	done
	3470
	3471	echo "#!/bin/sh" > mpi_exec_shell
	3472	echo " " >> mpi_exec_shell
	3473	echo "set -u" >> mpi_exec_shell
	3474	echo "F_ERRCNT=0" >> mpi_exec_shell
	3475	echo "MPIPROGINV=YES" >> mpi_exec_shell
	3476	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
	3477	echo "cpurest=$cpurest" >> mpi_exec_shell
	3478	echo "fname=$fname" >> mpi_exec_shell
	3479	echo "localhost=$localhost" >> mpi_exec_shell
[1468]	3480	echo "return_address=$return_address" >> mpi_exec_shell
[1]	3481	echo "return_username=$return_username" >> mpi_exec_shell
	3482	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
	3483	echo "write_binary=$write_binary" >> mpi_exec_shell
	3484	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
	3485	echo " " >> mpi_exec_shell
	3486	echo "export F_ERRCNT" >> mpi_exec_shell
	3487	echo "export MPIPROGINV" >> mpi_exec_shell
	3488	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
	3489	echo "export cpurest" >> mpi_exec_shell
	3490	echo "export fname" >> mpi_exec_shell
	3491	echo "export localhost" >> mpi_exec_shell
[1468]	3492	echo "export return_address" >> mpi_exec_shell
[1]	3493	echo "export return_username" >> mpi_exec_shell
	3494	echo "export tasks_per_node" >> mpi_exec_shell
	3495	echo "export write_binary" >> mpi_exec_shell
	3496	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
	3497	echo " " >> mpi_exec_shell
[102]	3498	echo "exec ./a.out" >> mpi_exec_shell
[1]	3499
	3500	chmod u+x mpi_exec_shell
	3501	export MPIPROGINF=YES
	3502	mpirun -f multinode_config &
	3503	wait
	3504
	3505	fi
[440]	3506	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
[1]	3507	then
	3508
	3509	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
	3510	# DOES NOT EXIST
[1622]	3511	if [[ $host != lcbullhh && $host != lccrayb && $host != lccrayf && $host != lccrayh && $host != lckyuh && $host != lckyut ]]
	3512
[1]	3513	then
[179]	3514	if [[ -f $hostfile ]]
	3515	then
	3516	cp $hostfile hostfile
[746]	3517	(( ii = $numprocs / $threads_per_task ))
[1598]	3518	[[ $ii = 0 ]] && (( ii = 1 ))
[179]	3519	else
	3520	(( ii = 1 ))
	3521	while (( ii <= $numprocs / $threads_per_task ))
	3522	do
	3523	echo $localhost_realname >> hostfile
	3524	(( ii = ii + 1 ))
	3525	done
[1598]	3526	if (( $numprocs / $threads_per_task == 0 ))
	3527	then
	3528	echo $localhost_realname >> hostfile
	3529	fi
[179]	3530	fi
	3531	eval zeile=\"`head -n $ii hostfile`\"
	3532	printf "\n *** running on: $zeile"
[1]	3533	fi
[179]	3534
[1]	3535	(( ii = $numprocs / $threads_per_task ))
[1598]	3536	[[ $ii = 0 ]] && (( ii = 1 ))
[1]	3537	export OMP_NUM_THREADS=$threads_per_task
[1289]	3538
[1]	3539	if [[ $threads_per_task != 1 ]]
	3540	then
[1289]	3541	# INCREASE STACK SIZE TO UNLIMITED, BECAUSE OTHERWISE LARGE RUNS
	3542	# MAY ABORT
[1304]	3543	ulimit -s unlimited
[405]	3544	printf "\n threads per task: $threads_per_task stacksize: unlimited"
[1]	3545	fi
[102]	3546	if [[ $run_coupled_model = false ]]
[1]	3547	then
[291]	3548	if [[ "$ocean_file_appendix" = true ]]
	3549	then
	3550	echo "precursor_ocean" > runfile_atmos
	3551	else
	3552	echo "precursor_atmos" > runfile_atmos
	3553	fi
[102]	3554	printf "\n\n"
[388]	3555
[1289]	3556	if [[ $host = lccrayb \|\| $host = lccrayh ]]
[1224]	3557	then
	3558	echo "--- aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos"
	3559	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
	3560	# aprun -n $ii -ss -r2 -j1 a.out $ROPTS < runfile_atmos
[1622]	3561
	3562	elif [[ $host = lcbullhh ]]
	3563	then
	3564	export OMPI_MCA_pml=cm
	3565	export OMPI_MCA_mtl=mxm
	3566	export OMPI_MCA_coll=^ghc
	3567	export OMPI_MCA_mtl_mxm_np=0
	3568	export MXM_RDMA_PORTS=mlx5_0:1
	3569	export MXM_LOG_LEVEL=ERROR
	3570	export OMP_NUM_THREADS=$threads_per_task
	3571	export KMP_AFFINITY=verbose,granularity=core,compact,1
	3572	export KMP_STACKSIZE=64m
	3573
	3574	srun --nodes=$nodes --ntasks-per-node=$tasks_per_node ./a.out
	3575
[1197]	3576	elif [[ $host = lccrayf ]]
	3577	then
[1420]	3578	aprun -j1 -n $ii -N $tasks_per_node -m ${memory}M a.out $ROPTS < runfile_atmos
[892]	3579	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
[179]	3580	then
[544]	3581	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
[755]	3582	elif [[ $host = lcflow ]]
	3583	then
[1547]	3584	mpirun -np $ii a.out < runfile_atmos $ROPTS
[1021]	3585	elif [[ $host = lcsb ]]
	3586	then
	3587	mpirun_rsh -hostfile $PBS_NODEFILE -np `cat $PBS_NODEFILE \| wc -l` a.out < runfile_atmos $ROPTS
[1040]	3588	elif [[ $host = lckiaps ]]
	3589	then
	3590	mpirun -np $ii -f $PBS_NODEFILE a.out < runfile_atmos $ROPTS
[1090]	3591	elif [[ $host = lckyu* ]]
	3592	then
[1106]	3593	mpiexec -n $ii --stdin runfile_atmos ./a.out $ROPTS
[164]	3594	else
[1106]	3595	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
[164]	3596	fi
[1]	3597	else
[164]	3598
[1289]	3599	# CURRENTLY THERE IS NO FULL MPI-2 SUPPORT ON ICE AND XT4
[206]	3600	(( iia = $numprocs_atmos / $threads_per_task ))
	3601	(( iio = $numprocs_ocean / $threads_per_task ))
	3602	printf "\n coupled run ($iia atmosphere, $iio ocean)"
	3603	printf "\n using $coupled_mode coupling"
[102]	3604	printf "\n\n"
[164]	3605
[206]	3606	if [[ $coupled_mode = "mpi2" ]]
[164]	3607	then
[206]	3608	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
	3609	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
[197]	3610
[1289]	3611	if [[ $host = lccrayf \|\| $host = lcxe6 \|\| $host = lcxt5m ]]
[206]	3612	then
[197]	3613
[206]	3614	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
	3615	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
	3616
	3617	else
	3618	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
	3619	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
	3620	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
	3621	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
	3622	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
	3623	fi
	3624	wait
	3625
[164]	3626	else
	3627
[206]	3628	echo "coupled_run $iia $iio" > runfile_atmos
	3629
[1289]	3630	if [[ $host = lccrayf \|\| $host = lcxe6 \|\| $host = lcxt5m ]]
[206]	3631	then
	3632
	3633	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
	3634
[718]	3635	elif [[ $host = lck \|\| $host = lckordi ]]
[367]	3636	then
[1108]	3637
	3638	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
	3639
	3640	elif [[ $host = lckyu* ]]
	3641	then
	3642
	3643	mpiexec -n $ii --stdin runfile_atmos ./a.out $ROPTS
	3644
[1604]	3645	elif [[ $host = lcmuk ]]
	3646	then
	3647
	3648	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
	3649
[206]	3650	fi
	3651	wait
[164]	3652	fi
[102]	3653
[206]	3654	fi
[1289]	3655
[440]	3656	elif [[ $host = lckyoto ]]
	3657	then
	3658	set -xv
	3659	export P4_RSHCOMMAND=plesh
	3660	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
	3661	if [[ "$ENVIRONMENT" = BATCH ]]
	3662	then
[505]	3663	if [[ "$cond2" = fujitsu ]]
	3664	then
	3665	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
	3666	elif [[ "cond2" = pgi ]]
	3667	then
	3668	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
	3669	else
	3670	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
	3671	fi
[440]	3672	else
[505]	3673	if [[ "$cond2" = "" ]]
	3674	then
	3675	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
	3676	else
	3677	mpirun -np $numprocs ./a.out $ROPTS
	3678	fi
[440]	3679	fi
	3680	set +xv
[1289]	3681
[1]	3682	elif [[ $host = lctit ]]
	3683	then
[678]	3684	export OMP_NUM_THREADS=$threads_per_task
	3685	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
	3686	if [[ "$threads_per_task" != 1 ]]
	3687	then
	3688	export MV2_ENABLE_AFFINITY=0
	3689	fi
	3690	echo "----- PBS_NODEFILE content:"
	3691	cat $PBS_NODEFILE
	3692	echo "-----"
	3693	(( ii = $numprocs / $threads_per_task ))
	3694	echo "mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS"
	3695	mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS
[1620]	3696
[1]	3697	else
[102]	3698	mpprun -n $numprocs a.out $ROPTS
[1]	3699	fi
[1620]	3700	else
[102]	3701	a.out $ROPTS
[1]	3702	fi
	3703	fi
[1289]	3704
	3705	if [[ $? != 0 ]]
[1]	3706	then
	3707
[1289]	3708	# ABORT IN CASE OF RUNTIME ERRORS
[1]	3709	printf "\n +++ runtime error occured"
	3710	locat=execution
	3711	exit
[1289]	3712
[1]	3713	else
[260]	3714
[1289]	3715	printf "\n$dashes\n *** execution finished \n"
	3716
	3717	# STOP THE DVR STREAMING SERVER AND PROCESS THE DVR OUTPUT IN ORDER
	3718	# TO CREAT DVRS- AND HTML-FILES CONTAINING ALL STREAMS
[260]	3719	if [[ "$dvrserver_id" != "" ]]
	3720	then
	3721	kill $dvrserver_id
	3722	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
[261]	3723
[1289]	3724	# IF THERE IS A DIRECTORY, DATA HAVE BEEN OUTPUT BY THE
	3725	# STREAMING SERVER. OTHERWISE, USER HAS CHOSEN dvrp_output=local
[262]	3726	if [[ -d DATA_DVR ]]
	3727	then
[261]	3728
[1289]	3729	# ADD THE CURRENT DVR CONFIGURATION FILE TO THE DVR OUTPUT
	3730	# DIRECTORY
[262]	3731	cp .dvrserver.config DATA_DVR
	3732
[1289]	3733	# PROCESS THE DVR OUTPUT (OPTION -s FOR GENERATING
	3734	# SEQUENCE MODE DATA TOO)
[262]	3735	process_dvr_output -d DATA_DVR -f $fname -s
	3736
	3737	else
	3738
[1289]	3739	# PROCESS THE LOCAL OUTPUT
[262]	3740	process_dvr_output -l -d DATA_DVR -f $fname
	3741
	3742	fi
	3743
	3744	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
	3745	then
	3746
[1289]	3747	# PROCESS DVR OUTPUT GENERATD IN LOCAL MODE (dvrp_output=local)
[262]	3748	process_dvr_output -l -d DATA_DVR -f $fname
	3749
[260]	3750	fi
[1]	3751	fi
	3752
	3753
	3754
[1289]	3755	# CALL OF combine_plot_fields IN ORDER TO MERGE SINGLE FILES WRITTEN
	3756	# BY EACH CORE INTO ONE FILE
[920]	3757	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
	3758	then
	3759	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
	3760	printf "\n 2d- and/or 3d-data may be incomplete!"
	3761	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
	3762	elif [[ "$combine_plot_fields" == true ]]
	3763	then
[1270]	3764	if [[ $localhost = lccrayh \|\| $localhost = lccrayb ]]
	3765	then
	3766	printf "\n\n\n *** post-processing: now executing \"aprun -n 1 -N 1 combine_plot_fields${block}.x\" ..."
	3767	aprun -n 1 -N 1 combine_plot_fields${block}.x #$ROPTS < runfile_atmos
	3768	else
	3769	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
	3770	combine_plot_fields${block}.x
	3771	fi
[920]	3772	else
[1289]	3773
	3774	# TEMPORARY SOLUTION TO SKIP combine_plot_fields. THIS IS REQUIRED IN CASE OF HUGE AMOUNT OF
	3775	# DATA OUTPUT. TO DO: EXTEND THIS BRANCH BY CREATING A BATCH JOB for combine_plot_fields.
	3776	# ??? koennen wir das streichen ???
[920]	3777	printf "\n\n\n *** post-processing: skipping combine_plot_fields (-Z option set) ..."
	3778	fi
[503]	3779
	3780
	3781
[1289]	3782	# EXECUTE OUTPUT-COMMANDS GIVEN IN THE CONFIGURATION FILE
[1]	3783	(( i = 0 ))
	3784	while (( i < ioc ))
	3785	do
	3786	(( i = i + 1 ))
	3787	if (( i == 1 ))
	3788	then
[1289]	3789	printf "\n\n *** execution of OUTPUT-commands:\n$dashes"
[1]	3790	fi
	3791	printf "\n >>> ${out_command[$i]}"
	3792	eval ${out_command[$i]}
	3793	if (( i == ioc ))
	3794	then
[1289]	3795	printf "\n$dashes\n"
[1]	3796	fi
	3797	done
	3798
	3799
[1289]	3800	# IN TRACE-MODE PRINT CONTENTS OF THE CURRENT (TEMPORARY) WORKING DIRECTORY
[1]	3801	if [[ $do_trace = true ]]
	3802	then
	3803	printf "\n\n"
	3804	ls -al
	3805	fi
	3806
	3807
	3808
[1289]	3809	# COPY LOCAL OUTPUT-FILES TO THEIR PERMANENT DESTINATIONS
[1]	3810	(( i = 0 ))
	3811	while (( i < iout ))
	3812	do
	3813	(( i = i + 1 ))
	3814	if (( i == 1 ))
	3815	then
[1289]	3816	printf "\n\n *** saving OUTPUT-files:\n$dashes"
[1]	3817	fi
	3818
[1289]	3819	# CHECK FOR SINGLE FILE (SERIAL RUN) OR DIRECTORY (ONE FILE PER CORE FOR PARELLEL EXECUTION)
[1]	3820	files_for_pes=false; filetyp=file
	3821	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
	3822	then
	3823	files_for_pes=true; filetyp=directory
	3824	actionout[$i]=""
	3825	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
	3826	then
	3827	actionout[$i]=""
	3828	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
	3829	then
	3830	files_for_pes=true; filetyp=directory
	3831	actionout[$i]="ar"
	3832	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
	3833	then
	3834	actionout[$i]="ar"
	3835	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
	3836	then
	3837	files_for_pes=true; filetyp=directory
	3838	actionout[$i]="fl"
	3839	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
	3840	then
	3841	actionout[$i]="fl"
	3842	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
	3843	then
	3844	files_for_pes=true; filetyp=directory
	3845	actionout[$i]="tr"
	3846	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
	3847	then
	3848	actionout[$i]="tr"
	3849	fi
	3850
	3851	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
	3852	then
	3853	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
[260]	3854	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
[1]	3855	then
	3856	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
	3857	else
	3858
	3859
[1289]	3860	# COPY VIA SCP TO LOCAL HOST (ALWAYS IN BINARY MODE USING batch_scp option -m)
	3861	# IF TARGET DIRECTORY DOES NOT EXISTS, TRY TO CREATE IT
[1]	3862	if [[ "${actionout[$i]}" = tr ]]
	3863	then
	3864	if [[ $localhost != $fromhost ]]
	3865	then
	3866	if [[ $files_for_pes = false ]]
	3867	then
	3868	cps=""
	3869	cst=""
	3870	else
	3871	cps=-c
	3872	cst="/"
	3873	fi
[622]	3874	if [[ $localhost = nech ]]
[1]	3875	then
	3876
[1289]	3877	# TRANSFER IN SEPERATE JOB
	3878	# FIRST COPY FILE TO TEMPORY DATA DIRECTORY
[1]	3879	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
	3880	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
	3881	if [[ $files_for_pes = false ]]
	3882	then
	3883	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
	3884	else
	3885	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
	3886	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
	3887	fi
	3888
	3889	echo "set -x" > transfer_${localout[$i]}
	3890	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
[82]	3891
	3892	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
	3893	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
	3894	printf "\n or higher cycle\n"
[1468]	3895	echo "batch_scp $PORTOPT $cps -b -m -u $return_username $return_address $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
[82]	3896
[1]	3897	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
	3898
	3899	if [[ $localhost = nech ]]
	3900	then
[1094]	3901	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
[1]	3902	else
	3903	if [[ "$LOGNAME" = b323013 ]]
	3904	then
[1094]	3905	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
[1]	3906	else
[1094]	3907	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
[1]	3908	fi
	3909	fi
	3910
	3911	else
	3912
[1289]	3913	# TRANSFER WITHIN THIS JOB
[1]	3914	transfer_failed=false
[82]	3915	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
	3916	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
[1255]	3917	if [[ $localhost = lccrayb ]]
	3918	then
[1468]	3919	ssh $usern@blogin1 ". \\$HOME/.profile; cd $TEMPDIR; batch_scp $PORTOPT $cps -b -m -u $return_username $return_address ${localout[$i]} \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}"
[1274]	3920	elif [[ $localhost = lccrayh ]]
	3921	then
[1468]	3922	ssh $usern@hlogin1 ". \\$HOME/.profile; cd $TEMPDIR; batch_scp $PORTOPT $cps -b -m -u $return_username $return_address ${localout[$i]} \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}"
[1620]	3923	elif [[ $localhost = lcbullhh ]]
	3924	then
	3925	ssh $usern@mlogin101 ". \\$HOME/.profile; cd $TEMPDIR; batch_scp $PORTOPT $cps -b -m -u $return_username $return_address ${localout[$i]} \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}"
[1468]	3926	elif [[ $localhost = lcxe6 ]]
	3927	then
	3928	ssh $usern@hexagon ". \\$HOME/.profile; cd $TEMPDIR; batch_scp $PORTOPT $cps -b -m -u $return_username $return_address ${localout[$i]} \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}"
[1255]	3929	else
[1468]	3930	batch_scp $PORTOPT $cps -b -m -u $return_username $return_address ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
[1255]	3931	fi
[82]	3932	[[ $? != 0 ]] && transfer_failed=true
[1]	3933
[1289]	3934	# IF TRANSFER FAILED, CREATE BACKUP COPY ON THIS MACHINE
[1]	3935	if [[ $transfer_failed = true ]]
	3936	then
[1289]	3937	printf " +++ transfer failed. Trying to save a copy on this host under:\n"
[1]	3938	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
	3939
[1289]	3940	# FIRST CHECK, IF DIRECTORY EXISTS, AND CREATE IT, IF NECESSARY
[1]	3941	eval local_catalog=${pathout[$i]}
	3942	if [[ ! -d $local_catalog ]]
	3943	then
	3944	printf " *** local directory does not exist. Trying to create:\n"
	3945	printf " $local_catalog \n"
	3946	mkdir -p $local_catalog
	3947	fi
	3948	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
	3949	transfer_problems=true
	3950	fi
	3951	fi
	3952	else
	3953
[1289]	3954	# UNSET actionout. DUE TO THIS SETTING, FILE WILL LATER JUST BE COPIED ON THIS MACHINE
[1]	3955	actionout[$i]=""
	3956	fi
	3957	fi
	3958
	3959
[1289]	3960	# APPEND VIA SCP TO LOCAL HOST (ALWAYS IN BINARY MODE USING batch_scp option -m)
	3961	# IF TARGET DIRECTORY DOES NOT EXISTS, TRY TO CREATE IT
[1]	3962	if [[ "${actionout[$i]}" = tra ]]
	3963	then
	3964	if [[ $localhost != $fromhost ]]
	3965	then
[622]	3966	if [[ $localhost = ibmh \|\| $localhost = nech ]]
[1]	3967	then
	3968
[1289]	3969	# TRANSFER IN SEPERATE JOB
	3970	# FIRST COPY FILE TO TEMPORY DATA DIRECTORY
[1]	3971	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
	3972	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
	3973	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
	3974
	3975	echo "set -x" > transfer_${localout[$i]}
	3976	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
[82]	3977
	3978	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
	3979	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
	3980	printf "\n or higher cycle\n"
[1468]	3981	echo "batch_scp $PORTOPT -A -b -m -u $return_username $return_address $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
[82]	3982
[1]	3983	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
	3984
	3985	if [[ $localhost = nech ]]
	3986	then
[1094]	3987	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
[1]	3988	else
	3989	if [[ $LOGNAME = b323013 ]]
	3990	then
[1094]	3991	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
[1]	3992	else
[1094]	3993	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
[1]	3994	fi
	3995	fi
	3996
	3997	else
	3998
[1289]	3999	# TRANSFER WITHIN THIS JOB
[1]	4000	transfer_failed=false
[82]	4001	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
	4002	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
[1255]	4003	if [[ $localhost = lccrayb ]]
	4004	then
[1468]	4005	ssh $usern@blogin1 ". \\$HOME/.profile; cd $TEMPDIR; batch_scp $PORTOPT -A -b -m -u $return_username $return_address ${localout[$i]} \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}"
[1274]	4006	elif [[ $localhost = lccrayh ]]
	4007	then
[1468]	4008	ssh $usern@hlogin1 ". \\$HOME/.profile; cd $TEMPDIR; batch_scp $PORTOPT -A -b -m -u $return_username $return_address ${localout[$i]} \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}"
	4009	elif [[ $localhost = lcxe6 ]]
	4010	then
	4011	ssh $usern@hexagon ". \\$HOME/.profile; cd $TEMPDIR; batch_scp $PORTOPT -A -b -m -u $return_username $return_address ${localout[$i]} \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}"
[1255]	4012	else
[1468]	4013	batch_scp $PORTOPT -A -b -m -u $return_username $return_address ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
[1255]	4014	fi
[82]	4015	[[ $? != 0 ]] && transfer_failed=true
[1]	4016
[1289]	4017	# IF TRANSFER FAILED, CREATE BACKUP COPY ON THIS MACHINE
[1]	4018	if [[ $transfer_failed = true ]]
	4019	then
[1289]	4020	printf " +++ transfer failed. Trying to save a copy on this host under:\n"
[1]	4021	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
	4022
[1289]	4023	# FIRST CHECK, IF DIRECTORY EXISTS, AND CREATE IT, IF NECESSARY
[1]	4024	eval local_catalog=${pathout[$i]}
	4025	if [[ ! -d $local_catalog ]]
	4026	then
	4027	printf " *** local directory does not exist. Trying to create:\n"
	4028	printf " $local_catalog \n"
	4029	mkdir -p $local_catalog
	4030	fi
	4031
	4032	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
	4033	transfer_problems=true
	4034	fi
	4035	fi
	4036	else
	4037
[1289]	4038	# RESET actionout. DUE TO THIS SETTING, FILE WILL LATER JUST BE APPENDED ON THIS MACHINE
[1]	4039	actionout[$i]=a
	4040	fi
	4041	fi
	4042
	4043
[1289]	4044	# OUTPUT-FILE FOR A RESTART-RUN.
	4045	# FILE IS MOVED TO THE TEMPORARY DATA DIRECTORY USING link COMMAND.
	4046	# OPTION -f IS USED TO OVERWRITE EXISTING FILES.
	4047	# AS LAST ACTION, ARCHIVING IS INITIATED.
[1]	4048	if [[ "${actionout[$i]}" = fl ]]
	4049	then
	4050	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	4051	chmod g+rx $tmp_data_catalog
	4052	if [[ $files_for_pes = false ]]
	4053	then
	4054	printf "\n >>> OUTPUT: ${localout[$i]} to"
	4055	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
	4056	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
	4057	else
	4058	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
	4059	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
	4060	mkdir $tmp_data_catalog/${frelout[$i]}
[149]	4061	cd ${localout[$i]}
	4062	for file in $(ls *)
	4063	do
	4064	ln -f $file $tmp_data_catalog/${frelout[$i]}
	4065	done
	4066	cd $TEMPDIR
[1]	4067	fi
	4068
	4069
[1289]	4070	# CREATE AND SUBMIT ARCHIVING-JOB
[1]	4071	if [[ $store_on_archive_system = true ]]
	4072	then
	4073
	4074	if [[ $archive_system = asterix ]]
	4075	then
	4076	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	4077	if [[ $files_for_pes = false ]]
	4078	then
	4079	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	4080	else
	4081	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	4082	fi
	4083	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	4084	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
	4085	echo "then" >> archive_${frelout[$i]}
	4086	echo " do_stageout=false" >> archive_${frelout[$i]}
	4087	echo "else" >> archive_${frelout[$i]}
	4088	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
	4089	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
	4090	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
	4091	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
	4092	if [[ $files_for_pes = false ]]
	4093	then
	4094	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
	4095	else
	4096	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
	4097	fi
	4098	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
	4099	echo "fi" >> archive_${frelout[$i]}
	4100	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	4101	elif [[ $archive_system = DMF ]]
	4102	then
	4103	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	4104	if [[ $files_for_pes = false ]]
	4105	then
	4106	printf "\n +++ archiving of single files impossible with $archive_system !\n"
	4107	locat=DMF
	4108	exit
	4109	else
[1289]	4110	# ??? nicht benÃ¶tigte Archiv-Systeme entfernen ???
[1]	4111	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
	4112	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
	4113	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
	4114	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
	4115	fi
	4116	elif [[ $archive_system = tivoli ]]
	4117	then
	4118	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	4119	if [[ $files_for_pes = false ]]
	4120	then
[1289]	4121	# REMOVE EXISTING OLD FILES FROM THE ARCHIVE
[1]	4122	echo "set -x" >> archive_${frelout[$i]}
	4123	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	4124	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	4125	else
	4126
	4127	echo "set -x" >> archive_${frelout[$i]}
	4128	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
	4129	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	4130	cd $tmp_data_catalog
	4131	all_files=`ls -1 ${frelout[$i]}/*`
	4132	cd - > /dev/null
	4133	(( inode = 0 ))
	4134	(( tp1 = tasks_per_node + 1 ))
	4135	while (( inode < nodes ))
	4136	do
	4137	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
	4138	all_files=`echo $all_files \| cut -d" " -f$tp1-`
[1289]	4139	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
[1]	4140	(( inode = inode + 1 ))
	4141	done
	4142	fi
	4143	elif [[ $archive_system = ut ]]
	4144	then
	4145	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	4146	if [[ $files_for_pes = false ]]
	4147	then
[1289]	4148	# REMOVE EXISTING OLD FILES FROM THE ARCHIVE
[1]	4149	echo "set -x" >> archive_${frelout[$i]}
	4150	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	4151	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	4152	else
	4153
	4154	echo "set -x" >> archive_${frelout[$i]}
	4155	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
	4156	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
	4157	cd $tmp_data_catalog
	4158	all_files=`ls -1 ${frelout[$i]}/*`
	4159	cd - > /dev/null
	4160	(( inode = 0 ))
	4161	(( tp1 = tasks_per_node + 1 ))
	4162	while (( inode < nodes ))
	4163	do
	4164	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
	4165	all_files=`echo $all_files \| cut -d" " -f$tp1-`
	4166	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
	4167	(( inode = inode + 1 ))
	4168	done
	4169	fi
	4170	elif [[ $archive_system = none ]]
	4171	then
	4172	printf " +++ archiving on $localhost not available!\n"
	4173	fi
	4174
	4175	if [[ $archive_system != none ]]
	4176	then
[1289]	4177	if [[ $localhost = nech ]]
[1]	4178	then
[1094]	4179	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
[1]	4180	fi
	4181	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	4182	fi
	4183	else
[399]	4184	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
[1]	4185	fi
	4186
	4187
[1289]	4188	# CREATE AN EMPTY DIRECTORY IN THE USERS PERMANENT DIRECTORY,
	4189	# IN ORDER TO NOTE THE RESPECTIVE CYCLE NUMBER ON THE ARCHIVE SYSTEM
	4190	# RESTART-JOBS ARE USING THESE EMPTY-DIRECTORIES TO GET THE CURRENT HIGHEST
	4191	# CYCLE NUMBER ON THE ARCHIVE SYSTEM (IN CASE THAT INFORMATIONS ARE DIFFICULT TO
	4192	# TO ACCESS FROM THE ARCHIVE-SYSTEM DIRECTLY))
[1]	4193	if [[ $files_for_pes = false ]]
	4194	then
	4195	cat /dev/null > ${pathout[$i]}
	4196	else
	4197	mkdir -p ${pathout[$i]}
	4198	fi
	4199
	4200	fi
	4201
	4202
[1289]	4203	# COPY FROM THIS HOST TO THE ARCHIVE-SYSTEM
	4204	# IF ANY ARCHIVING FAILS, AN ERROR-FLAG-FILE IS SET
	4205	# THIS FILE REMAINS TO BE SET, EVEN IF ARCHIVING OF FURTHER FILES IS SUCCESSFULL
[1]	4206	if [[ "${actionout[$i]}" = ar ]]
	4207	then
	4208	if [[ $files_for_pes = false ]]
	4209	then
	4210	printf "\n >>> OUTPUT: ${localout[$i]} to"
	4211	printf "\n ${pathout[$i]}"
	4212	printf "\n File will be copied to archive-system ($archive_system) !\n"
	4213	else
	4214	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
	4215	printf "\n ${pathout[$i]}"
	4216	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
	4217	fi
	4218	mv ${localout[$i]} ${frelout[$i]}
	4219
	4220	file_saved=false
	4221
	4222	if [[ $archive_system = asterix ]]
	4223	then
	4224	do_stageout=true
	4225	(( stageout_anz = 0 ))
	4226	while [[ $do_stageout = true ]]
	4227	do
	4228	if [[ $files_for_pes = false ]]
	4229	then
	4230	stageout ${frelout[$i]} > STAGE_OUTPUT
	4231	else
	4232	stageout -t ${frelout[$i]} > STAGE_OUTPUT
	4233	fi
	4234	cat STAGE_OUTPUT
	4235	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
	4236	then
	4237	file_saved=true
	4238	do_stageout=false
	4239	else
	4240	if [[ $files_for_pes = false ]]
	4241	then
	4242	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
	4243	else
	4244	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
	4245	fi
	4246	(( stageout_anz = stageout_anz + 1 ))
	4247	if (( stageout_anz == 10 ))
	4248	then
	4249	printf "\n +++ stoped after 10 unsuccessful tries!"
	4250	archive_save=false
	4251	do_stageout=false
	4252	else
	4253	printf "\n *** new try to store on archive after 15 min:"
	4254	sleep 900
	4255	fi
	4256	fi
	4257	done
	4258	elif [[ $archive_system = DMF ]]
	4259	then
	4260	if [[ $files_for_pes = false ]]
	4261	then
	4262	printf "\n +++ archiving of single files impossible on $archive_system!\n"
	4263	locat=DMF
	4264	exit
	4265	else
	4266	rm -rf $ARCHIVE/${frelout[$i]}
	4267	cp -r ${frelout[$i]} $ARCHIVE
	4268	fi
	4269	file_saved=true
	4270	elif [[ $archive_system = tivoli ]]
	4271	then
[1289]	4272	# ARCHIVING ONLY POSSIBLE VIA BATCH-JOB
	4273	# IN THE MEANTIME, FILE IS STORED IN THE TEMPORARY DATA DIRECTORY,
	4274	# BECAUSE MRUN'S CURRENT TEMPORARY WORKING DIRECTORY MAY ALREADY BE DELETED
	4275	# WHEN THE ARCHIVE-JOB IS EXECUTED
[1]	4276	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	4277	chmod g+rx $tmp_data_catalog
	4278	if [[ $files_for_pes = false ]]
	4279	then
	4280	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
	4281	else
	4282	mkdir $tmp_data_catalog/${frelout[$i]}
	4283	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
	4284	fi
	4285
[1289]	4286	# GENERATE AND SUBMIT BATCH-JOB
	4287	# FILE HAS TO BE DELETED FROM THE TEMPORARY DATA DIRECTORY
	4288	# DELETE OLD EXISTING FILES FROM THE ARCHIVE
[1]	4289	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
	4290	if [[ $files_for_pes = false ]]
	4291	then
	4292	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	4293	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	4294	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	4295	else
	4296	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	4297	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	4298	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	4299	fi
	4300
[1094]	4301	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog $PORTOPT archive_${frelout[$i]}
[1]	4302	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	4303	file_saved=true
	4304
	4305	elif [[ $archive_system = ut ]]
	4306	then
[1289]	4307	# ARCHIVING ONLY POSSIBLE VIA BATCH-JOB
	4308	# IN THE MEANTIME, FILE IS STORED IN THE TEMPORARY DATA DIRECTORY,
	4309	# BECAUSE MRUN'S CURRENT TEMPORARY WORKING DIRECTORY MAY ALREADY BE DELETED
	4310	# WHEN THE ARCHIVE-JOB IS EXECUTED
[1]	4311	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	4312	chmod g+rx $tmp_data_catalog
	4313	if [[ $files_for_pes = false ]]
	4314	then
	4315	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
	4316	else
	4317	mkdir $tmp_data_catalog/${frelout[$i]}
	4318	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
	4319	fi
	4320
[1289]	4321	# GENERATE AND SUBMIT BATCH-JOB
	4322	# FILE HAS TO BE DELETED FROM THE TEMPORARY DATA DIRECTORY
	4323	# DELETE OLD EXISTING FILES FROM THE ARCHIVE
[1]	4324	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
	4325	if [[ $files_for_pes = false ]]
	4326	then
	4327	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	4328	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	4329	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	4330	else
	4331	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	4332	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	4333	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	4334	fi
	4335
[1094]	4336	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
[1]	4337	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	4338	file_saved=true
	4339
	4340	else
	4341	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
	4342	archive_save=false
	4343	fi
[1289]	4344
	4345	# CREATE EMPTY FLAG-FILE OR -DIRECTORY
	4346	# IN ORDER TO NOTE THE RESPECTIVE CYCLE NUMBER ON THE ARCHIVE SYSTEM
	4347	# RESTART-JOBS ARE USING THESE EMPTY-DIRECTORIES TO GET THE CURRENT HIGHEST
	4348	# CYCLE NUMBER ON THE ARCHIVE SYSTEM (IN CASE THAT INFORMATIONS ARE DIFFICULT TO
	4349	# TO ACCESS FROM THE ARCHIVE-SYSTEM DIRECTLY))
[1]	4350	if [[ $file_saved = true ]]
	4351	then
	4352	if [[ $files_for_pes = false ]]
	4353	then
	4354	cat /dev/null > ${pathout[$i]}
	4355	else
	4356	mkdir -p ${pathout[$i]}
	4357	fi
	4358	fi
[1289]	4359
[1]	4360	fi
	4361
[1289]	4362	# APPEND ON THIS MACHINE
[1]	4363	if [[ "${actionout[$i]}" = "a" ]]
	4364	then
[741]	4365	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
	4366	then
	4367	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}.${extout[$i]}\n"
	4368	cat ${localout[$i]} >> ${pathout[$i]}.${extout[$i]}
	4369	else
	4370	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
	4371	cat ${localout[$i]} >> ${pathout[$i]}
	4372	fi
[1]	4373	fi
	4374
[1289]	4375	# COPY ON THIS MACHINE
	4376	# COPY HAS TO BE USED, BECAUSE MOVE DOES NOT WORK IF FILE-ORIGIN AND TARGET ARE
	4377	# ON DIFFERENT FILE-SYSTEMS
[1]	4378	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
	4379	then
	4380
[1289]	4381	# COPY IN CASE OF RUNS ON SINGLE CORES
[5]	4382	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
[1]	4383	then
	4384	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
[149]	4385	if [[ $link_local_output = true ]]
	4386	then
	4387	printf " using ln -f\n"
	4388	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
	4389	fi
	4390	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
	4391	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
	4392	then
	4393	if [[ $link_local_output = true ]]
	4394	then
	4395	printf " ln failed, using cp...\n"
	4396	fi
	4397	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
	4398	fi
[1]	4399	else
	4400	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
[149]	4401	if [[ $link_local_output = true ]]
	4402	then
	4403	printf " using ln -f\n"
	4404	ln -f ${localout[$i]} ${pathout[$i]}
	4405	fi
	4406	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
	4407	if [[ ! -f "${pathout[$i]}" ]]
	4408	then
	4409	if [[ $link_local_output = true ]]
	4410	then
	4411	printf " ln failed, using cp...\n"
	4412	fi
	4413	cp ${localout[$i]} ${pathout[$i]}
	4414	fi
[1]	4415	fi
	4416
	4417	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
	4418	then
	4419
[1289]	4420	# FILES FROM THE DIFFERENT CORES ARE MOVED WITH ln-COMMAND TO THE PERMANENT DIRECTORY
	4421	# AS A FIRST STEP, THE PERMANENT DIRECTORY IS CREATED
[1]	4422	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
[149]	4423	if [[ $link_local_output = true ]]
	4424	then
	4425	printf " using ln -f\n"
	4426	mkdir ${pathout[$i]}
	4427	cd ${localout[$i]}
	4428	for file in $(ls *)
	4429	do
	4430	ln -f $file ${pathout[$i]}
	4431	done
	4432	cd $TEMPDIR
	4433	fi
[1289]	4434
	4435	# IF "ln -f" HAS FAILED OR IF "$link_local_output = false" DO A NORMAL COPY "cp -r"
[149]	4436	if [[ ! -f "${pathout[$i]}/_0000" ]]
	4437	then
	4438	if [[ $link_local_output = true ]]
	4439	then
	4440	printf " ln failed for .../_0000, using cp...\n"
	4441	fi
	4442	cp -r ${localout[$i]} ${pathout[$i]}
	4443	fi
[1]	4444
	4445	fi
	4446	fi
	4447	done
	4448	if (( i != 0 ))
	4449	then
	4450	if [[ $transfer_problems = true ]]
	4451	then
[1289]	4452	printf "\n$dashes\n *** OUTPUT-files saved"
[1]	4453	printf "\n +++ WARNING: some data transfers failed! \n"
	4454	else
[1289]	4455	printf "\n$dashes\n *** all OUTPUT-files saved \n"
[1]	4456	fi
	4457	fi
	4458
	4459
[1289]	4460	# IF REQUIRED, START A RESTART-JOB
	4461	# FILE CONTINUE_RUN MUST HAVE BEEN CREATED BY THE EXECUTABLE (PALM)
[1]	4462	if [[ -f CONTINUE_RUN ]]
	4463	then
	4464
	4465	if [[ $archive_save = true ]]
	4466	then
	4467
[1289]	4468	# ADD RESTART-OPTIONS TO THE MRUN-CALL (IF THEY ARE NOT USED ALREADY):
	4469	# -C TELLS MRUN THAT IT IS A RESTART-RUN
	4470	# -v SILENT MODE WITHOUT INTERACTIVE QUERIES
	4471	# -n BATCH-MODE (IMPORTANT ONLY IN CASE OF BATCH JOBS ON THE LOCAL MACHINE)
[1]	4472	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
	4473	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
	4474	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
	4475	if [[ $(echo $mc \| grep -c "#") != 0 ]]
	4476	then
	4477	mc=`echo $mc \| sed 's/#/f/g'`
	4478	fi
	4479
	4480
[1289]	4481	# START THE RESTART-JOB
[1468]	4482	printf "\n\n *** initiating restart-run on \"$return_address\" using command:\n"
[1]	4483	echo " $mc"
[1289]	4484	printf "\n$dashes\n"
[1]	4485	if [[ $localhost != $fromhost ]]
	4486	then
	4487
[1620]	4488	if [[ $localhost = lcbullhh \|\| $localhost = lccrayb \|\| $localhost = lccrayh \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibms \|\| $localhost = lcflow \|\| $localhost = lckyu* \|\| $localhost = lcxe6 ]]
[1]	4489	then
	4490	echo "*** ssh will be used to initiate restart-runs!"
[1468]	4491	echo " return_address=\"$return_address\" "
[1]	4492	echo " return_username=\"$return_username\" "
[1468]	4493	if [[ $(echo $return_address \| grep -c "130.75.105") = 1 ]]
[1]	4494	then
[1190]	4495	if [[ $localhost = ibmh ]]
	4496	then
[1468]	4497	ssh $SSH_PORTOPT $usern@136.172.40.15 "ssh $SSH_PORTOPT $return_address -l $return_username \". \\\$HOME/.profile; module load intel-compiler hdf5 netcdf; PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
[1620]	4498	elif [[ $localhost = lcbullhh ]]
	4499	then
	4500	ssh $SSH_PORTOPT $usern@mlogin101 "ssh $SSH_PORTOPT $return_address -l $return_username \". \\\$HOME/.profile; module load intel-compiler hdf5 netcdf; PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
[1255]	4501	elif [[ $localhost = lccrayb ]]
	4502	then
[1468]	4503	ssh $usern@blogin1 "ssh $SSH_PORTOPT $return_address -l $return_username \". \\\$HOME/.profile; module load intel-compiler hdf5 netcdf; PATH=\\\$PATH:$LOCAL_MRUN_PATH; export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
[1274]	4504	elif [[ $localhost = lccrayh ]]
	4505	then
[1468]	4506	ssh $usern@hlogin1 "ssh $SSH_PORTOPT $return_address -l $return_username \". \\\$HOME/.profile; module load intel-compiler hdf5 netcdf; PATH=\\\$PATH:$LOCAL_MRUN_PATH; export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
	4507	elif [[ $localhost = lcxe6 ]]
	4508	then
	4509	ssh $usern@hexagon "ssh $SSH_PORTOPT $return_address -l $return_username \". \\\$HOME/.profile; module load intel-compiler hdf5 netcdf; PATH=\\\$PATH:$LOCAL_MRUN_PATH; export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
[1190]	4510	else
[1468]	4511	ssh $SSH_PORTOPT $return_address -l $return_username ". \\\$HOME/.profile; module load intel-compiler hdf5 netcdf; PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
[1190]	4512	fi
[1]	4513	else
[693]	4514	if [[ $localhost = ibmkisti ]]
	4515	then
[1468]	4516	ssh $SSH_PORTOPT $usern@gaiad "ssh $SSH_PORTOPT $return_address -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
[1255]	4517	elif [[ $localhost = lcflow ]]
	4518	then
[1468]	4519	/usr/bin/ssh $SSH_PORTOPT $return_address -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
[1255]	4520	elif [[ $localhost = lccrayb ]]
	4521	then
[1468]	4522	ssh $usern@blogin1 "ssh $SSH_PORTOPT $return_address -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
[1274]	4523	elif [[ $localhost = lccrayh ]]
	4524	then
[1468]	4525	ssh $usern@hlogin1 "ssh $SSH_PORTOPT $return_address -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
[693]	4526	else
[1468]	4527	ssh $SSH_PORTOPT $return_address -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
[693]	4528	fi
[1]	4529	fi
	4530	else
	4531	printf "\n +++ no restart mechanism available for host \"$localhost\" "
	4532	locat=restart; exit
	4533	fi
	4534
[1289]	4535	# WAIT TO ALLOW THE RESTART-JOB TO BE QUEUED, BEFORE THE CURRENT JOB IS FINISHED
[399]	4536	if [[ $queue = special1q ]]
	4537	then
	4538	sleep 120
	4539	else
	4540	sleep 30
	4541	fi
[1]	4542
	4543	else
	4544
[1289]	4545	# JOBS RUNNING (AND STARTED) ON THE LOCAL MACHINE CAN DIRECTLY CALL MRUN (WITHOUT
	4546	# USING SSH)
[1]	4547	cd $LOCAL_PWD
[1289]	4548	if [[ $localhost = lckyuh ]]
[108]	4549	then
[1103]	4550	printf "\n +++ WARNING: no restart mechanism available for host \"$localhost\" "
	4551	printf "\n please restart job manually using command:\n"
	4552	printf "\n \"$mc\" "
[108]	4553	else
[1289]	4554	eval $mc # THE ' MUST BE EVALUATED
[108]	4555	fi
[1]	4556	cd - > /dev/null
	4557	fi
[1103]	4558	if [[ $localhost = lckyuh ]]
	4559	then
[1289]	4560	printf "\n$dashes\n *** restart-run to be initiated manually\n"
[1103]	4561	else
[1289]	4562	printf "\n$dashes\n *** restart-run initiated \n"
[1103]	4563	fi
[1]	4564
	4565
[1289]	4566	# DELETE INPUT-(RESTART)FILES, WHICH HAVE BEEN FETCHED FROM THE TEMPORARY DATA
	4567	# DIRECTORY, BACAUSE THEY ARE NOT REQUIRED BY THE RESTART-JOB.
	4568	# THIS IS DONE IN ORDER TO AVOID EXCEEDING DISC QUOTAS OR DISC SPACE (RESTART-FILES
	4569	# MAY BE VERY HUGE)
[1]	4570	(( i = 0 ))
	4571	while (( i < iin ))
	4572	do
	4573	(( i = i + 1 ))
	4574	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
	4575	then
	4576	rm -r $tmp_data_catalog/${frelin[$i]}
	4577	fi
	4578	done
	4579
	4580	else
	4581
	4582	printf "\n +++ no restart-run possible, since errors occured"
	4583	printf "\n during the archive process"
	4584	fi
	4585
	4586	fi
	4587
	4588
	4589
[1289]	4590	# SEND EMAIL NOTIFICATION ABOUT THE FINISHED RUN
[352]	4591	if [[ "$email_notification" != "none" ]]
[1]	4592	then
	4593
	4594	if [[ $localhost != $fromhost ]]
	4595	then
	4596	if [[ -f CONTINUE_RUN ]]
	4597	then
	4598	echo "PALM restart run necessary" > email_text
	4599	echo "description header of actual run:" >> email_text
	4600	cat CONTINUE_RUN >> email_text
	4601	echo "mrun-command to restart:" >> email_text
	4602	echo "$mc" >> email_text
	4603	else
	4604	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
	4605	fi
	4606	mail $email_notification < email_text
	4607	printf "\n *** email notification sent to \"$email_notification\" "
	4608	fi
	4609	fi
	4610
	4611
	4612
[1289]	4613	# ALL ACTIONS FINISHED, TEMPORARY WORKING-DIRECTORY CAN BE DELETED
[1]	4614	cd $HOME
	4615	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
	4616
	4617	else
	4618
[1289]	4619	# PREPARING ACTIONS,
	4620	# IF A BATCH-JOB IS TO BE GENERATED AND STARTED ON A REMOTE-MACHINE GERECHNET
[1]	4621
[1289]	4622	# BUILD THE MRUN-COMMAND TO BE CALLED IN THE BATCH-JOB ON THE REMOTE-MACHINE
[1468]	4623	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_address -U $return_username -u $remote_username"
[1]	4624	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
[79]	4625	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
[123]	4626	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
[1]	4627	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
	4628	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
	4629	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
	4630	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
	4631	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
	4632	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
	4633	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
	4634	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
	4635	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
	4636	if [[ $use_openmp = true ]]
	4637	then
[622]	4638	mrun_com=${mrun_com}" -O $threads_per_task"
[1]	4639	fi
[759]	4640	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
[397]	4641	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
[1]	4642	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
	4643	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
	4644	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
[127]	4645	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
[291]	4646	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
[206]	4647	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
[920]	4648	[[ "$check_namelist_files" = false ]] && mrun_com=${mrun_com}" -z"
	4649	[[ "$combine_plot_fields" = false ]] && mrun_com=${mrun_com}" -Z"
[759]	4650	[[ "$max_par_io_str" != "" ]] && mrun_com=${mrun_com}" -w $max_par_io_str"
[1]	4651	if [[ $do_remote = true ]]
	4652	then
	4653	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
	4654	fi
	4655
	4656
[1289]	4657	# CREATE EXECUTABLE FOR BATCH JOB
[1199]	4658	if [[ $create_executable_for_batch = true && $restart_run != true ]]
	4659	then
	4660
	4661	printf "\n *** creating the executable for batch job\n"
	4662
[1289]	4663	# METHOD ONLY WORKS FOR BATCH JOBS ON LOCAL HOSTS
[1199]	4664	if [[ $host != $localhost ]]
	4665	then
	4666	printf "\n +++ creation of executables is only allowed for batch jobs on local hosts."
	4667	printf "\n Please set create_executable_for_batch = false in the config-file.\n"
	4668	locat=create_executable; exit
	4669	fi
	4670
	4671	mkdir $working_directory/SOURCES_FOR_RUN_${fname}/TMPDIR_FOR_CREATING_EXECUTABLE
	4672	cd $working_directory/SOURCES_FOR_RUN_${fname}/TMPDIR_FOR_CREATING_EXECUTABLE
	4673
	4674	cp $make_depository .
	4675	tar -xf $make_depository > /dev/null 2>&1
	4676	cp ../* . > /dev/null 2>&1
	4677
	4678	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
	4679
	4680	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
	4681	then
	4682	printf "\n +++ error occured while compiling or linking"
	4683	locat=compile
	4684	exit
	4685	fi
	4686
	4687	mv a.out ..
	4688	cd - > /dev/null 2>&1
	4689	rm -rf $working_directory/SOURCES_FOR_RUN_${fname}/TMPDIR_FOR_CREATING_EXECUTABLE
	4690
	4691	printf " *** executable created in \"$working_directory/SOURCES_FOR_RUN_${fname}\"\n "
	4692
	4693	fi
	4694
	4695
[1289]	4696	# BUILD THE JOB-SCRIPTS ON FILE jobfile
[1]	4697	jobfile=jobfile.$RANDOM
	4698
	4699
[1289]	4700	# CREATE TEMPORARY DIRECTORY AND SWITCH TO IT
[1]	4701	echo "mkdir $TEMPDIR" >> $jobfile
	4702	echo "cd $TEMPDIR" >> $jobfile
	4703
	4704
[1289]	4705	# ACTIVATE ERROR-TRACEBACK
[1]	4706	if [[ $do_trace = true ]]
	4707	then
	4708	echo "set -x" >> $jobfile
	4709	else
	4710	echo "set +vx" >> $jobfile
	4711	fi
	4712
	4713
[1289]	4714	# INITIALIZE THE ENVIRONMENT AND LOAD MODULES
[1043]	4715	if [[ "$init_cmds" != "" ]]
	4716	then
	4717	echo "$init_cmds" >> $jobfile
	4718	fi
	4719	if [[ "$module_calls" != "" ]]
	4720	then
	4721	echo "$module_calls" >> $jobfile
	4722	fi
	4723
	4724
[1289]	4725	# PROVIDE SOURCE-CODE FILES, MRUN-SCRIPT AND CONFIGURATION-FILE FOR THE JOB
	4726	# then-CLAUSE: FILES ARE COLLECTED IN THE SOURCES_FOR_RUN_... DIRECTORY ON THE LOCAL HOST,
	4727	# WHICH IS THEN FETCHED FROM THE BATCH-JOB BY USING cp/scp
	4728	# THE SOURCE-CODE FILES ALREADY EXIST IN THIS DIRECTORY
	4729	# else-CLAUSE: FILE-CONTENTS ARE PUT INTO THE JOB-FILE AS HERE-DOCUMENTS
	4730	# THIS MAY CREATE A QUITE LARGE JOB-FILE, WHICH CAN CAUSE PROBLEMS WITH SOME
	4731	# QUEUEING-SYSTEMS
[1620]	4732	if [[ $host = ibmkisti \|\| $host = lcbullhh \|\| $host = lccrayb \|\| $host = lccrayf \|\| $host = lccrayh ]]
[1]	4733	then
	4734
[1289]	4735	# COPY CONFIGURATION-FILE AND MRUN-SCRIPT INTO THE SOURCES_FOR_RUN... DIRECTORY
[191]	4736	if [[ $restart_run != true ]]
	4737	then
	4738	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
	4739	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
	4740	fi
[1]	4741
[1289]	4742	# COPY THE SOURCES_FOR_RUN... DIRECTORY FROM THE LOCAL HOST TO THE JOB VIA scp
	4743	# (then-CLAUSE: JOBS ON THE LOCAL HOST CAN JUST USE cp)
[193]	4744	echo "set -x" >> $jobfile
[693]	4745	if [[ $host = $localhost ]]
	4746	then
[1199]	4747	# DUE TO UNKNOWN REASONS, COPY WITH cp COMMAND CREATES CORRUPT
	4748	# FILES ON CRAY XC30 SYSTEMS (CSC HELSINKI), rsync IS USED INSTEAD
[1281]	4749	if [[ $(echo $host \| cut -c1-6) = lccray ]]
	4750	then
	4751	echo "rsync -av -t $working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
	4752	else
	4753	echo "cp -r $working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
	4754	fi
[1199]	4755
[693]	4756	else
[1255]	4757	if [[ $host = ibmkisti ]]
[693]	4758	then
[1289]	4759	# ON KISTI'S IBM FIREWALL IS ONLY OPENED ON INTERACTIVE NODE
[693]	4760	echo "localdir=\`pwd\`" >> $jobfile
[1468]	4761	echo "ssh $SSH_PORTOPT $remote_username@gaiad \"cd \$localdir; scp $PORTOPT -r $return_username@$return_address:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
[1620]	4762	elif [[ $host = lcbullhh ]]
	4763	then
	4764	echo "localdir=\`pwd\`" >> $jobfile
	4765	echo "ssh $SSH_PORTOPT $remote_username@mlogin101 \"cd \$localdir; scp $PORTOPT -r $return_username@$return_address:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
	4766
[1255]	4767	elif [[ $host = lccrayb ]]
	4768	then
	4769	echo "localdir=\`pwd\`" >> $jobfile
[1468]	4770	echo "ssh $SSH_PORTOPT $remote_username@blogin1 \"cd \$localdir; scp $PORTOPT -r $return_username@$return_address:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
[1274]	4771	elif [[ $host = lccrayh ]]
	4772	then
	4773	echo "localdir=\`pwd\`" >> $jobfile
[1468]	4774	echo "ssh $SSH_PORTOPT $remote_username@hlogin1 \"cd \$localdir; scp $PORTOPT -r $return_username@$return_address:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
[1274]	4775
[1255]	4776	else
[1468]	4777	echo "scp $PORTOPT -r $return_username@$return_address:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
[693]	4778	fi
	4779	fi
[193]	4780	echo "export SOURCES_COMPLETE=true" >> $jobfile
[1]	4781
[1289]	4782	# MOVE MRUN-SCRIPT AND CONFIGURATION-FILE FROM THE SOURCES_FOR_RUN... DIRECTORY TO THE
	4783	# WORKING DIRECTORY OF THE JOB
[193]	4784	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
	4785	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
[1199]	4786	echo "chmod u+rwx $mrun_script_name" >> $jobfile
[193]	4787	echo "execute_mrun=true" >> $jobfile
	4788	echo " " >> $jobfile
	4789
[191]	4790	else
	4791
[1289]	4792	# PROVIDE SOURCE-CODE FILES AND MAKEFILE AS HERE DOCUMENT
[191]	4793	if [[ $do_compile = true ]]
	4794	then
	4795
	4796	source_catalog=SOURCES_FOR_RUN_$fname
	4797
[1289]	4798	# CREATE SOURCES_FOR_RUN... DIRECTORY TO STORE THE SOURCE CODE FILES AND THE MAKEFILE
[191]	4799	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
	4800	echo "export SOURCES_COMPLETE=true" >> $jobfile
	4801	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
	4802
	4803	for filename in $source_list
	4804	do
[1289]	4805	# BACKSLASH IS USED FOR MASKING
[191]	4806	echo "cat > $filename << \"%END%\"" >> $jobfile
	4807	cat $source_catalog/$filename >> $jobfile
	4808	echo " " >> $jobfile
	4809	echo "%END%" >> $jobfile
	4810	echo " " >> $jobfile
	4811	done
	4812
[1289]	4813	# BACKSLASH IS USED FOR MASKING
[191]	4814	echo "cat > Makefile << \"%END%\"" >> $jobfile
	4815	cat $source_catalog/Makefile >> $jobfile
[1]	4816	echo " " >> $jobfile
	4817	echo "%END%" >> $jobfile
	4818	echo " " >> $jobfile
	4819
[191]	4820	echo "cd - > /dev/null" >> $jobfile
[1]	4821
[191]	4822	fi
[1]	4823
	4824
[1289]	4825	# PROVIDE THE CONFIGURATION-FILE AS HERE-DOCUMENT
	4826	# BACKSLASH IS USED FOR MASKING
	4827	# LINES WITH #$ IN THE CONFIGURATION-FILE, COMING FROM THE SVN KEYWORD SUBSTITUTION,
	4828	# ARE REMOVED FROM THE FILE IN ORDER TO AVOID PROBLEMS WITH THE SGE BATCH SYSTEM
[191]	4829	echo "cat > $config_file << \"%END%\"" >> $jobfile
[1101]	4830	if [[ $host = lckyuh ]]
	4831	then
[1289]	4832	# NO CROSS-COMPILER ON COMPUTE NODE
[1101]	4833	sed 's/frtpx/frt/g' $config_file >> $jobfile
	4834	else
	4835	sed 's/#$.*//g' $config_file >> $jobfile
	4836	fi
[191]	4837	echo "%END%" >> $jobfile
	4838	echo " " >> $jobfile
[1]	4839
	4840
[1289]	4841	# PROVIDE THE MRUN-SCRIPTS AS HERE-DOCUMENT
	4842	# BACKSLASH IS USED FOR MASKING
[1101]	4843	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
[1103]	4844	if [[ $host = lckyuh ]]
	4845	then
	4846	sed 's/\/bin\/ksh/\/bin\/bash/g' ${PALM_BIN}/$mrun_script_name >> $jobfile
	4847	else
	4848	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
	4849	fi
[1101]	4850	echo "%END%" >> $jobfile
[191]	4851	echo "chmod u+x $mrun_script_name" >> $jobfile
	4852	echo "execute_mrun=true" >> $jobfile
	4853	echo " " >> $jobfile
[1]	4854
	4855	fi
	4856
[191]	4857
[1289]	4858	# GET REQUIRED INPUT-FILES BY SCP OR BY SENDING THEM WITH THE JOB AS HERE-DOCUMENT
	4859	# PUT THESE FILES INTO THE USER'S RESPECTIVE PERMANENT DIRECTORIES ON THE REMOTE-HOST
	4860	# IF THE DIRECTORIES DO NOT EXIST, TRY TO CREATE THEM
[1]	4861	if [[ $do_remote = true ]]
	4862	then
	4863	(( i = 0 ))
	4864	while (( i < iin ))
	4865	do
	4866	(( i = i + 1 ))
	4867	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
	4868	if [[ "${transin[$i]}" = job ]]
	4869	then
	4870	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
	4871	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
	4872	echo " " >> $jobfile
	4873	echo "%END%" >> $jobfile
	4874	else
[1468]	4875	echo "batch_scp $PORTOPT -b -o -g -s -u $return_username $return_address ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
[1]	4876	fi
	4877
[1289]	4878	# CHECK, IF FILE COULD BE CREATED
[1]	4879	echo "if [[ \$? = 1 ]]" >> $jobfile
	4880	echo "then" >> $jobfile
	4881	echo " echo \" \" " >> $jobfile
	4882	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
	4883	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
	4884	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
	4885	echo " execute_mrun=false" >> $jobfile
	4886	echo "fi" >> $jobfile
	4887	done
	4888	fi
	4889
[1289]	4890	# PROVIDE NAME OF THE CURRENT WORKING-DIRECTORY ON THE LOCAL MACHINE (FROM WHERE THE JOB IS
	4891	# STARTED) BY SETTING AN ENVIRONMENT-VARIABLE. THIS INFORMATION IS USED IN THE JOB BY MRUN
	4892	# IN CASE THAT RESTART-RUNS HAVE TO BE GENERATED
[1]	4893	echo "LOCAL_PWD=$working_directory" >> $jobfile
	4894	echo "export LOCAL_PWD" >> $jobfile
	4895
[1289]	4896	# PROVIDE THE PATH OF THE LOCAL MRUN-SCRIPT FOR THE SAME REASON
[22]	4897	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
[1]	4898	echo "export LOCAL_MRUN_PATH" >> $jobfile
	4899
[1289]	4900	# lcflow ALSO REQUIRES TO PROVIDE PATH FOR THE PALM-SCRIPTS
[1547]	4901	# if [[ $host = lcflow \|\| $localhost = lcflow ]]
	4902	# then
[1099]	4903	echo "export PALM_BIN=$PALM_BIN" \| sed -e 's:'$HOME':$HOME:' >> $jobfile
	4904	echo "export PATH=\$PATH:\$PALM_BIN" >> $jobfile
[1547]	4905	# fi
[1]	4906
[1289]	4907	# CALL MRUN WITHIN THE JOB (SETTING QUEUE IS A WORKAROUND FOR ibmkisti)
	4908	# AS FINAL ACTION, REMOVE THE TEMPORARY DIRECTORY CREATED AT THE BEGINNING OF THE JOB
[1101]	4909	echo "set -x" >> $jobfile
	4910	echo "queue=$queue" >> $jobfile
[1]	4911	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
[1101]	4912	echo 'ls -al; echo `pwd`' >> $jobfile
	4913	echo "cd \$HOME" >> $jobfile
	4914	echo "rm -rf $TEMPDIR" >> $jobfile
[1]	4915
	4916
	4917
	4918
[1289]	4919	# START THE JOB USING SUBJOB-COMMAND
[1]	4920	if [[ $silent = false ]]
	4921	then
	4922	printf "\n "
	4923	else
	4924	printf "\n\n"
	4925	fi
	4926
[1094]	4927	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $PORTOPT $jobfile
[1]	4928	rm -rf $jobfile
	4929
	4930
[1289]	4931	fi # END OF REMOTE-PART

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