| [3193] | 1 | #$Id: .palm.config.eddy_ifort 3193 2018-08-07 09:55:00Z witha $ |
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| [3163] | 2 | #column 1 column 2 |
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| 3 | #name of variable value of variable (~ must not be used) |
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| 4 | #---------------------------------------------------------------------------- |
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| 5 | %base_data $HOME/palm/current_version/JOBS |
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| 6 | %output_data $WORK/palm/current_version/JOBS |
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| 7 | %base_directory $HOME/palm/current_version |
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| 8 | %source_path $HOME/palm/current_version/trunk/SOURCE |
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| [3236] | 9 | %user_source_path $base_directory/JOBS/$run_identifier/USER_CODE |
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| [3163] | 10 | %fast_io_catalog $WORK/palm_restart_tmp |
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| 11 | %local_jobcatalog $HOME/job_queue |
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| 12 | ################################################################################ |
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| 13 | # Replace abcd1234 by your username on Eddy: |
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| 14 | ################################################################################ |
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| 15 | %local_username abcd1234 |
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| 16 | # |
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| 17 | %defaultqueue eddy.p |
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| 18 | %submit_command sbatch |
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| 19 | # |
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| 20 | %compiler_name mpiifort |
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| 21 | %compiler_name_ser ifort |
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| 22 | %cpp_options -DMPI_REAL=MPI_DOUBLE_PRECISION -DMPI_2REAL=MPI_2DOUBLE_PRECISION -D__lc -D__netcdf -D__netcdf4 -D__parallel |
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| 23 | %make_options -j 4 |
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| 24 | %compiler_options -O3 -mtune=native -march=native -cpp -I/cm/shared/uniol/software2/netCDF-Fortran/4.4.4-intel-2017a/include |
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| 25 | %linker_options -O3 -mtune=native -march=native -cpp -lnetcdff -lnetcdf |
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| 26 | %execute_command mpirun -n {{mpi_tasks}} palm |
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| [3193] | 27 | %execute_command_for_combine mpirun -n 1 ./combine_plot_fields.x |
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| [3163] | 28 | %memory 2333 |
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| [3199] | 29 | %module_commands module load PALMDependencies/icc |
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| [3163] | 30 | # |
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| 31 | # BATCH-directives to be used for batch jobs |
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| 32 | BD:#!/bin/bash |
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| [3346] | 33 | BD:#SBATCH -J {{run_id}} |
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| [3163] | 34 | BD:#SBATCH -t {{timestring}} |
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| 35 | BD:#SBATCH -n {{mpi_tasks}} |
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| 36 | BD:#SBATCH -N {{nodes}} |
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| 37 | BD:#SBATCH --cpus-per-task 1 |
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| 38 | BD:#SBATCH -p {{queue}} |
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| 39 | BD:#SBATCH -o {{job_protocol_file}} |
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| 40 | BD:#SBATCH -e {{job_protocol_file}} |
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| 41 | BD:#SBATCH --mem-per-cpu {{memory}} |
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| 42 | BD:#SBATCH --exclusive |
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| 43 | # |
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| 44 | #---------------------------------------------------------------------------- |
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| 45 | # INPUT-commands, executed before running PALM - lines must start with "IC:" |
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| 46 | #---------------------------------------------------------------------------- |
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| 47 | IC:export ATP_ENABLED=1 |
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| 48 | IC:export MPICH_GNI_BTE_MULTI_CHANNEL=disabled |
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| 49 | IC:ulimit -s unlimited |
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| 50 | # |
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| 51 | #---------------------------------------------------------------------------- |
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| 52 | # ERROR-commands - executed when program terminates abnormally |
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| 53 | #---------------------------------------------------------------------------- |
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| 54 | EC:[[ \$locat = execution ]] && cat RUN_CONTROL |
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| 55 | # |
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| 56 | #---------------------------------------------------------------------------- |
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| 57 | # OUTPUT-commands - executed when program terminates normally |
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| 58 | #---------------------------------------------------------------------------- |
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| 59 | # |
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| 60 | # Combine 1D- and 3D-profile output (these files are not usable for plotting) |
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| 61 | OC:[[ -f LIST_PROFIL_1D ]] && cat LIST_PROFIL_1D >> LIST_PROFILE |
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| 62 | OC:[[ -f LIST_PROFIL ]] && cat LIST_PROFIL >> LIST_PROFILE |
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| 63 | # |
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| 64 | # Combine all particle information files |
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| 65 | OC:[[ -f PARTICLE_INFOS/_0000 ]] && cat PARTICLE_INFOS/* >> PARTICLE_INFO |
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