source: palm/trunk/SCRIPTS/.palm.config.eddy_gfort

Last change on this file was 4814, checked in by gronemeier, 8 months ago

add additional output paths to palm.iofiles and update configuration files accordingly

File size: 3.0 KB
Line 
1#$Id: .palm.config.eddy_gfort 3193 2018-08-07 09:55:00Z witha $
2#column 1          column 2
3#name of variable  value of variable (~ must not be used)
4#----------------------------------------------------------------------------
5%base_directory      $HOME/palm/current_version
6%base_data           $HOME/palm/current_version/JOBS
7%source_path         $HOME/palm/current_version/trunk/SOURCE
8%user_source_path    $base_data/$run_identifier/USER_CODE
9%fast_io_catalog     $WORK/palm_restart_tmp
10%restart_data_path   $fast_io_catalog
11%output_data_path    $WORK/palm/current_version/JOBS
12%local_jobcatalog    $HOME/job_queue
13################################################################################
14# Replace abcd1234 by your username on Eddy:
15################################################################################
16%local_username      abcd1234
17#
18%defaultqueue        eddy.p
19%submit_command      sbatch
20#
21%compiler_name       mpifort
22%compiler_name_ser   gfortran
23%cpp_options         -DMPI_REAL=MPI_DOUBLE_PRECISION -DMPI_2REAL=MPI_2DOUBLE_PRECISION -D__lc -D__netcdf -D__netcdf4 -D__parallel
24%make_options        -j 4
25%compiler_options    -O3 -mtune=native -march=native -cpp -fconvert=little-endian -I/cm/shared/uniol/software/netCDF-Fortran/4.4.4-goolf-5.2.01/include
26%linker_options      -O3 -mtune=native -march=native -cpp -lnetcdff -lnetcdf
27%execute_command     mpirun -n {{mpi_tasks}} palm
28%execute_command_for_combine     mpirun  -n 1  ./combine_plot_fields.x
29%memory              2333
30%module_commands     module load PALMDependencies/.gcc
31#
32# BATCH-directives to be used for batch jobs
33BD:#!/bin/bash
34BD:#SBATCH -J {{run_id}}
35BD:#SBATCH -t {{timestring}}
36BD:#SBATCH -n {{mpi_tasks}}
37BD:#SBATCH -N {{nodes}}
38BD:#SBATCH --cpus-per-task 1
39BD:#SBATCH -p {{queue}}
40BD:#SBATCH -o {{job_protocol_file}}
41BD:#SBATCH -e {{job_protocol_file}}
42BD:#SBATCH --mem-per-cpu {{memory}}
43BD:#SBATCH --exclusive
44#
45#----------------------------------------------------------------------------
46# INPUT-commands, executed before running PALM - lines must start with "IC:"
47#----------------------------------------------------------------------------
48IC:export ATP_ENABLED=1
49IC:export MPICH_GNI_BTE_MULTI_CHANNEL=disabled
50IC:ulimit  -s unlimited
51#
52#----------------------------------------------------------------------------
53# ERROR-commands - executed when program terminates abnormally
54#----------------------------------------------------------------------------
55EC:[[ \$locat = execution ]]  &&  cat  RUN_CONTROL
56#
57#----------------------------------------------------------------------------
58# OUTPUT-commands - executed when program terminates normally
59#----------------------------------------------------------------------------
60# Combine 1D- and 3D-profile output (these files are not usable for plotting)
61OC:[[ -f LIST_PROFIL_1D     ]]  &&  cat  LIST_PROFIL_1D  >>  LIST_PROFILE
62OC:[[ -f LIST_PROFIL        ]]  &&  cat  LIST_PROFIL     >>  LIST_PROFILE
63#
64# Combine all particle information files
65OC:[[ -f PARTICLE_INFOS/_0000 ]]  &&  cat  PARTICLE_INFOS/* >> PARTICLE_INFO
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