source: palm/trunk/SCRIPTS/.palm.config.default_trace @ 4814

Last change on this file since 4814 was 4814, checked in by gronemeier, 11 months ago

add additional output paths to palm.iofiles and update configuration files accordingly

  • Property svn:keywords set to Id Rev
File size: 6.7 KB
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1#$Id: .palm.config.default_trace 4814 2020-12-09 13:08:08Z gronemeier $
2#column 1          column 2
3#name of variable  value of variable (~ must not be used except for base_data)
4#-----------------------------------------------------------------------------
5# working directory from where palmrun or palmbuild are called
6%base_directory      $HOME/palm/current_version
7
8# directory where PALM I/O is stored (used in .palm.iofiles)
9%base_data           ~/palm/current_version/JOBS
10
11# path to PALM's FORTRAN sources (installation folder)
12%source_path         $base_directory/trunk/SOURCE
13
14# path to user interface routines
15%user_source_path    $base_data/$run_identifier/USER_CODE
16
17# path to temporary working directory. This folder contains the files
18# temporarily created by PALM during execution.
19# WARNING:
20# Large I/O files are generated during execution! It is recommended to direct
21# this path to a file system with fast discs (if available). This folder must
22# be accessible from all compute nodes, i.e. it must reside in a global file
23# system.
24%fast_io_catalog     $base_directory/tmp
25
26# directory where PALM restart files are stored. It is recommended to set this
27# path to the same file system as the temporary directory (fast_io_catalog) to
28# allow internal linking of the restart files instead of copying (increases
29# post-processing performance of palmrun).
30%restart_data_path   $fast_io_catalog
31
32# directory where PALM output files are stored (see also .palm.iofiles)
33%output_data_path    $base_data
34
35# folder for job protocols
36%local_jobcatalog    $base_data/$run_identifier/LOG_FILES
37
38# folder for job protocols to be used on the remote host
39#%remote_jobcatalog   $local_jobcatalog
40
41# local ip of your computer. Use 127.0.0.0 if you are running PALM
42# in interactive mode on your local computer
43%local_ip            <replace by your computers IP address>
44
45# your local UNIX username
46%local_username      <replace by your unix username>
47
48# ip address of the remote host
49#%remote_ip           <ip>
50
51# username on the remote host
52#%remote_username     <username>
53
54# ssh-key to be used for ssh/scp calls to the remote host
55#%ssh_key             ~/.ssh/id_rsa
56
57# name of login-node on the remote machine
58#%remote_loginnode    <loginnode>
59
60# default queue to be used if palmrun-option -q is omitted
61#%defaultqueue        <queue>
62
63# default project account to be used if palmrun-option -A is omitted. For this
64# setting to be active, the batch directive must also be activated (see BD and
65# BDT settings below).
66#%project_account     <project-account>
67
68# command to submit batch jobs
69#%submit_command      /opt/moab/default/bin/msub -E
70
71# compilername to generate MPI executables
72%compiler_name       mpif90
73
74# compilername to generate non-MPI executables running on one core
75%compiler_name_ser   ifort
76
77# preprocessor directives to be used for compiling the PALM code
78%cpp_options         -cpp -D__parallel -DMPI_REAL=MPI_DOUBLE_PRECISION -DMPI_2REAL=MPI_2DOUBLE_PRECISION -D__fftw -D__netcdf
79
80# used for parallel compilation
81%make_options        -j 4
82
83# options to be used to compile PALM
84%compiler_options    -fpe0 -O0 -check -check nooutput_conversion-ffree-line-length-none  -traceback -g -I /path/to/fftw/include -I /path/to/netcdf/include
85
86# options to be used to link the PALM executable
87%linker_options      -L/path/to/fftw/lib -lfftw3 -L/path/to/netcdf/lib -lnetcdf -lnetcdff
88
89# name of hostfile to be used (see online documentation for more details)
90#%hostfile            auto
91
92# command to start the PALM executable
93%execute_command     mpirun -n {{mpi_tasks}}  ./palm
94
95# memory request per core
96#%memory              2300
97
98# module commands to load required libraries
99#%module_commands     module switch env-ivybridge env-haswell && module load fftw netcdf
100
101# special commands to be carried out at login and start of batch jobs on the remote host
102#%login_init_cmd      .execute_special_profile
103
104#-------------------------------------------------------------------------------
105# Directives to be used for batch jobs
106# Lines must start with "BD:". If $-characters are required, hide them with \
107# Internal variables can be used as {{variable_name}}. Please see documentation.
108#-------------------------------------------------------------------------------
109# Example using PBS:
110BD:#!/bin/bash
111#BD:#PBS -A {{project_account}}
112BD:#PBS -N {{run_id}}
113BD:#PBS -l walltime={{cpu_hours}}:{{cpu_minutes}}:{{cpu_seconds}}
114BD:#PBS -l nodes={{nodes}}:ppn={{tasks_per_node}}
115BD:#PBS -o {{job_protocol_file}}
116BD:#PBS -j oe
117BD:#PBS -q {{queue}}
118#
119# Example using SLURM:
120#BD:#!/bin/bash
121##BD:#SBATCH --dependency=afterany:{{previous_job}}
122#BD:#SBATCH -A {{project_account}}
123#BD:#SBATCH --job-name={{run_id}}
124#BD:#SBATCH --time={{cpu_hours}}:{{cpu_minutes}}:{{cpu_seconds}}
125#BD:#SBATCH --ntasks={{mpi_tasks}}
126#BD:#SBATCH --nodes={{nodes}}
127#BD:#SBATCH --ntasks-per-node={{tasks_per_node}}
128#BD:#SBATCH --partition={{queue}}
129#BD:#SBATCH --output={{job_protocol_file}}
130#BD:#SBATCH --error={{job_protocol_file}}
131#BD:#SBATCH --mail-type=ALL
132#BD:#SBATCH --mail-user=user@somewhere
133
134#-------------------------------------------------------------------------------
135# Directives for batch jobs used to send back the jobfiles from a remote to a local host
136# Lines must start with "BDT:". If $-characters are required, excape them with triple backslash
137# Internal variables can be used as {{variable_name}}. Please see documentation.
138#-------------------------------------------------------------------------------
139# Example using PBS:
140BDT:#!/bin/bash
141#BDT:#PBS -A {{project_account}}
142BDT:#PBS -N job_protocol_transfer
143BDT:#PBS -l walltime=00:30:00
144BDT:#PBS -l nodes=1:ppn=1
145BDT:#PBS -o {{job_transfer_protocol_file}}
146BDT:#PBS -j oe
147BDT:#PBS -q dataq
148#
149# Example using SLURM:
150#BDT:#!/bin/bash
151#BDT:#SBATCH -A {{project_account}}
152#BDT:#SBATCH --job-name=job_transfer
153#BDT:#SBATCH --time=00:30:00
154#BDT:#SBATCH --ntasks=1
155#BDT:#SBATCH --nodes=1
156#BDT:#SBATCH --ntasks-per-node=1
157#BDT:#SBATCH --partition={{queue}}
158#BDT:#SBATCH --output={{job_transfer_protocol_file}}
159#BDT:#SBATCH --error={{job_transfer_protocol_file}}
160
161#----------------------------------------------------------------------------
162# INPUT-commands, executed before running PALM - lines must start with "IC:"
163#----------------------------------------------------------------------------
164#IC:ulimit -s unlimited
165#
166#----------------------------------------------------------------------------
167# ERROR-commands - executed when program terminates abnormally
168#----------------------------------------------------------------------------
169#EC:[[ \$locat = execution ]]  &&  cat  RUN_CONTROL
170#
171#----------------------------------------------------------------------------
172# OUTPUT-commands - executed when program terminates normally
173#----------------------------------------------------------------------------
174#OC:echo \\\"PALM job finished\\\" | mailx user@somewhere
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