source: palm/trunk/SCRIPTS/.palm.config.default @ 3455

Last change on this file since 3455 was 3455, checked in by raasch, 3 years ago

options -h and -d renamed -c and -r, respectively, job_queue renamed job_logfiles in sveral configuration files

  • Property svn:keywords set to Id
File size: 5.4 KB
Line 
1#$Id: .palm.config.default 3455 2018-10-30 14:12:31Z raasch $
2#column 1          column 2
3#name of variable  value of variable (~ must not be used except for base_data)
4#-----------------------------------------------------------------------------
5# working directory from where palmrun or palmbuild are called
6%base_directory    $HOME/palm/current_version
7
8# directory where PALM I/O is stored (used in .palm.iofiles)
9%base_data         ~/palm/current_version/JOBS
10
11# path to PALM's FORTRAN sources (installation folder)
12%source_path       $HOME/palm/current_version/trunk/SOURCE
13
14# path to user interface routines
15%user_source_path  $base_directory/JOBS/$run_identifier/USER_CODE
16
17# path to file system with fast discs (if available). This folder
18# is used for temporary catalogs generated by palmrun and to store large
19# I/O files (used in .palm.iofiles). This folder must be accessible from
20# all compute nodes, i.e. it must reside in a global file system
21%fast_io_catalog   <replace by a folder name which allows for fast I/O>
22
23# folder for job protocols
24#%local_jobcatalog    $HOME/job_logfiles
25
26# folder for job protocols to be used on the remote host
27#%remote_jobcatalog   <path/to/directory on remote host>
28
29# local ip of your computer. Use 127.0.0.0 if you are running PALM
30# in interactive mode on your local computer
31%local_ip            <replace by your computers IP address>
32
33# your local UNIX username
34%local_username      <replace by your unix username>
35
36# ip address of the remote host
37#%remote_ip           <ip>
38
39# username on the remote host
40#%remote_username     <username>
41
42# ssh-key to be used for ssh/scp calls to the remote host
43#%ssh_key             ~/.ssh/id_rsa
44
45# name of login-node on the remote machine
46#%remote_loginnode    <loginnode>
47
48# default queue to be used if palmrun-option -q is omitted
49#%defaultqueue        <queue>
50
51# command to submit batch jobs
52#%submit_command      /opt/moab/default/bin/msub -E
53
54# compilername to generate MPI executables
55%compiler_name       mpif90
56
57# compilername to generate non-MPI executables running on one core
58%compiler_name_ser   ifort
59
60# preprocessor directives to be used for compiling the PALM code
61%cpp_options         -cpp -D__parallel -DMPI_REAL=MPI_DOUBLE_PRECISION -DMPI_2REAL=MPI_2DOUBLE_PRECISION -D__fftw -D__netcdf
62
63# used for parallel compilation
64%make_options        -j 4
65
66# options to be used to compile PALM
67%compiler_options    -fpe0 -O3 -xHost -fp-model source -ftz -no-prec-div -no-prec-sqrt -ip -I /muksoft/packages/fftw/3.3.4/include -L/muksoft/packages/fftw/3.3.4/lib64 -lfftw3 -I /muksoft/packages/netcdf/4_intel/include -L/muksoft/packages/netcdf/4_intel/lib -lnetcdf -lnetcdff
68
69# options to be used to link the PALM executable
70%linker_options      -fpe0 -O3 -xHost -fp-model source -ftz -no-prec-div -no-prec-sqrt -ip -I /muksoft/packages/fftw/3.3.4/include -L/muksoft/packages/fftw/3.3.4/lib64 -lfftw3 -I /muksoft/packages/netcdf/4_intel/include -L/muksoft/packages/netcdf/4_intel/lib -lnetcdf -lnetcdff
71
72# name of hostfile to be used
73%hostfile            auto
74
75# command to start the PALM executable
76%execute_command     mpiexec  -machinefile hostfile  -n {{mpi_tasks}}  palm
77
78# memory request per core
79#%memory              2300
80
81# module commands to load required libraries
82#%module_commands     module switch craype-ivybridge craype-haswell; module load fftw cray-hdf5-parallel cray-netcdf-hdf5parallel
83
84# special commands to be carried out at login and start of batch jobs on the remote host
85#%login_init_cmd      .execute_special_profile
86
87
88#----------------------------------------------------------------------------
89# INPUT-commands, executed before running PALM - lines must start with "IC:"
90#----------------------------------------------------------------------------
91#IC:ulimit -s unlimited
92#
93#----------------------------------------------------------------------------
94# ERROR-commands - executed when program terminates abnormally
95#----------------------------------------------------------------------------
96#EC:[[ \$locat = execution ]]  &&  cat  RUN_CONTROL
97#
98#----------------------------------------------------------------------------
99# OUTPUT-commands - executed when program terminates normally
100#----------------------------------------------------------------------------
101#OC:echo \\\"PALM job finished\\\" | mailx user@somewhere
102
103
104#-------------------------------------------------------------------------------
105# Directives to be used for batch jobs
106# Lines must start with "BD:". If $-characters are required, hide them with \
107# Internal variables can be used as {{variable_name}}. Please see documentation.
108#-------------------------------------------------------------------------------
109BD:#!/bin/bash
110BD:#PBS -N {{job_id}}
111BD:#PBS -l walltime={{cpu_hours}}:{{cpu_minutes}}:{{cpu_seconds}}
112BD:#PBS -l nodes={{nodes}}:ppn={{tasks_per_node}}
113BD:#PBS -o {{job_protocol_file}}
114BD:#PBS -j oe
115BD:#PBS -q {{queue}}
116
117
118#-------------------------------------------------------------------------------
119# Directives for batch jobs used to send back the jobfiles from a remote to a local host
120# Lines must start with "BDT:". If $-characters are required, excape them with triple backslash
121# Internal variables can be used as {{variable_name}}. Please see documentation.
122#-------------------------------------------------------------------------------
123BDT:#!/bin/bash
124BDT:#PBS -N job_protocol_transfer
125BDT:#PBS -l walltime=00:30:00
126BDT:#PBS -l nodes=1:ppn=1
127BDT:#PBS -o {{job_transfer_protocol_file}}
128BDT:#PBS -j oe
129BDT:#PBS -q dataq
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