1 | ################################################################################ |
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2 | # This is a configuration file for PALM. It must be named: .palm.config.<suffix> |
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3 | # in order to use it, call palmbuild and palmrun with the option: -h <suffix> |
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4 | # Documentation: https://palm.muk.uni-hannover.de/trac/wiki/doc/app/jobcontrol |
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5 | ################################################################################ |
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6 | # |
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7 | #------------------------------------------------------------------------------- |
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8 | # General compiler and host configuration section. |
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9 | # Variable declaration lines must start with a percent character |
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10 | # Internal variables can be used as {{VARIABLE_NAME}}. Please see documentation. |
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11 | #------------------------------------------------------------------------------- |
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12 | %base_directory @CMAKE_INSTALL_PREFIX@ |
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13 | %base_data @CMAKE_INSTALL_PREFIX@/JOBS |
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14 | %source_path @CMAKE_INSTALL_PREFIX@/trunk/SOURCE |
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15 | %user_source_path @CMAKE_INSTALL_PREFIX@/JOBS/$fname/USER_CODE |
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16 | %fast_io_catalog @CMAKE_INSTALL_PREFIX@/tmp |
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17 | %local_jobcatalog @CMAKE_INSTALL_PREFIX@/job_queue |
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18 | #%remote_jobcatalog <path/to/directory> |
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19 | # |
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20 | %local_ip 127.0.0.1 |
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21 | %local_hostname @PALM_HOSTNAME@ |
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22 | %local_username @CMAKE_USERNAME@ |
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23 | # |
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24 | #%remote_ip <ip> |
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25 | #%remote_hostname <hostname> |
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26 | #%remote_loginnode <loginnode> |
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27 | #%remote_username <username> |
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28 | #%ssh_key ~/.ssh/id_rsa |
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29 | # |
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30 | #%defaultqueue <queue> |
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31 | #%submit_command /opt/moab/default/bin/msub -E |
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32 | # |
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33 | %compiler_name @MPI_Fortran_COMPILER@ |
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34 | %compiler_name_ser @CMAKE_Fortran_COMPILER@ |
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35 | %cpp_options @PALM_CPP_OPTIONS_STR@ |
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36 | %make_options -j @PALM_CORES@ |
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37 | %compiler_options @PALM_COMPILER_OPTIONS@ |
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38 | %linker_options @PALM_LINKER_OPTIONS@ |
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39 | %execute_command mpirun -n {{mpi_tasks}} ./palm |
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40 | #%memory 2300 |
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41 | #%module_commands module load fftw cray-hdf5-parallel cray-netcdf-hdf5parallel |
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42 | #%login_init_cmd module switch craype-ivybridge craype-haswell |
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43 | # |
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44 | #------------------------------------------------------------------------------- |
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45 | # Directives to be used for batch jobs |
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46 | # Lines must start with "BD:". If $-characters are required, hide them with \ |
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47 | # Internal variables can be used as {{variable_name}}. Please see documentation. |
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48 | #------------------------------------------------------------------------------- |
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49 | BD:#!/bin/bash |
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50 | BD:#PBS -N {{job_id}} |
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51 | BD:#PBS -l walltime={{cpu_hours}}:{{cpu_minutes}}:{{cpu_seconds}} |
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52 | BD:#PBS -l nodes={{nodes}}:ppn={{tasks_per_node}} |
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53 | BD:#PBS -o {{job_protocol_file}} |
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54 | BD:#PBS -j oe |
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55 | BD:#PBS -q {{queue}} |
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56 | # |
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57 | #------------------------------------------------------------------------------- |
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58 | # Directives for batch jobs used to send back the jobfiles from a remote to a local host |
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59 | # Lines must start with "BDT:". If $-characters are required, excape them with triple backslash |
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60 | # Internal variables can be used as {{variable_name}}. Please see documentation. |
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61 | #------------------------------------------------------------------------------- |
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62 | BDT:#!/bin/bash |
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63 | BDT:#PBS -N job_protocol_transfer |
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64 | BDT:#PBS -l walltime=00:30:00 |
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65 | BDT:#PBS -l nodes=1:ppn=1 |
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66 | BDT:#PBS -o {{job_transfer_protocol_file}} |
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67 | BDT:#PBS -j oe |
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68 | BDT:#PBS -q dataq |
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69 | # |
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70 | #------------------------------------------------------------------------------- |
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71 | # INPUT-commands. These commands are executed before running PALM |
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72 | # Lines must start with "IC:" |
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73 | #------------------------------------------------------------------------------- |
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74 | IC:export ATP_ENABLED=1 |
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75 | IC:export MPICH_GNI_BTE_MULTI_CHANNEL=disabled |
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76 | IC:ulimit -s unlimited |
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77 | # |
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78 | #------------------------------------------------------------------------------- |
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79 | # ERROR-commands. These commands are executed when PALM terminates abnormally |
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80 | # Lines must start with "EC:" |
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81 | #------------------------------------------------------------------------------- |
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82 | EC:[[ $locat = execution ]] && cat RUN_CONTROL |
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83 | # |
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84 | #------------------------------------------------------------------------------- |
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85 | # OUTPUT-commands. These commands are executed when PALM terminates normally |
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86 | # Lines must start with "OC:" |
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87 | #------------------------------------------------------------------------------- |
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88 | # |
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89 | # Combine 1D- and 3D-profile output (these files are not usable for plotting) |
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90 | OC:[[ -f LIST_PROFIL_1D ]] && cat LIST_PROFIL_1D >> LIST_PROFILE |
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91 | OC:[[ -f LIST_PROFIL ]] && cat LIST_PROFIL >> LIST_PROFILE |
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92 | # |
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93 | # Combine all particle information files |
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94 | OC:[[ -f PARTICLE_INFOS/_0000 ]] && cat PARTICLE_INFOS/* >> PARTICLE_INFO |
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95 | |
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