1 | #$Id: .palm.config.crayh 2693 2017-12-13 12:33:49Z maronga $ |
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2 | #column 1 column 2 |
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3 | #name of variable value of variable (~ must not be used) |
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4 | #---------------------------------------------------------------------------- |
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5 | %base_data ~/palm/current_version/JOBS |
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6 | %base_directory $HOME/palm/current_version |
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7 | %source_path $HOME/palm/current_version/trunk/SOURCE |
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8 | %user_source_path $base_directory/JOBS/$fname/USER_CODE |
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9 | %fast_io_catalog /gfs2/work/niksiraa |
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10 | %local_jobcatalog /home/raasch/job_queue |
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11 | %remote_jobcatalog /home/h/niksiraa/job_queue |
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12 | # |
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13 | %local_ip 130.75.105.103 |
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14 | %local_username raasch |
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15 | %remote_ip 130.75.4.1 |
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16 | %remote_loginnode hlogin1 |
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17 | %remote_username niksiraa |
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18 | %ssh_key id_rsa_hlrn |
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19 | %defaultqueue mpp2testq |
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20 | %submit_command /opt/moab/default/bin/msub -E |
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21 | # |
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22 | %compiler_name ftn |
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23 | %compiler_name_ser ftn |
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24 | %cpp_options -e Z -DMPI_REAL=MPI_DOUBLE_PRECISION -DMPI_2REAL=MPI_2DOUBLE_PRECISION -D__parallel -D__netcdf -D__netcdf4 -D__netcdf4_parallel -D__fftw |
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25 | %make_options -j 4 |
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26 | %compiler_options -em -O3 -hnoomp -hnoacc -hfp3 -hdynamic |
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27 | %linker_options -em -O3 -hnoomp -hnoacc -hfp3 -hdynamic -dynamic |
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28 | %execute_command aprun -n {{mpi_tasks}} -N {{tasks_per_node}} palm |
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29 | %execute_command_for_combine aprun -n 1 -N 1 ./combine_plot_fields.x |
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30 | %memory 2300 |
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31 | %module_commands module load fftw cray-hdf5-parallel cray-netcdf-hdf5parallel |
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32 | %login_init_cmd module switch craype-ivybridge craype-haswell |
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33 | # |
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34 | # BATCH-directives to be used for batch jobs |
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35 | BD:#!/bin/bash |
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36 | BD:#PBS -A {{project_account}} |
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37 | BD:#PBS -N {{job_id}} |
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38 | BD:#PBS -l walltime={{cpu_hours}}:{{cpu_minutes}}:{{cpu_seconds}} |
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39 | BD:#PBS -l nodes={{nodes}}:ppn={{tasks_per_node}} |
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40 | BD:#PBS -o {{job_protocol_file}} |
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41 | BD:#PBS -j oe |
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42 | BD:#PBS -q {{queue}} |
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43 | # |
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44 | # BATCH-directives for batch jobs used to send back the jobfile from a remote to a local host |
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45 | BDT:#!/bin/bash |
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46 | BDT:#PBS -A {{project_account}} |
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47 | BDT:#PBS -N job_protocol_transfer |
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48 | BDT:#PBS -l walltime=00:30:00 |
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49 | BDT:#PBS -l nodes=1:ppn=1 |
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50 | BDT:#PBS -o {{job_transfer_protocol_file}} |
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51 | BDT:#PBS -j oe |
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52 | BDT:#PBS -q dataq |
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53 | # |
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54 | #---------------------------------------------------------------------------- |
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55 | # INPUT-commands, executed before running PALM - lines must start with "IC:" |
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56 | #---------------------------------------------------------------------------- |
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57 | IC:export ATP_ENABLED=1 |
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58 | IC:export MPICH_GNI_BTE_MULTI_CHANNEL=disabled |
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59 | IC:ulimit -s unlimited |
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60 | # |
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61 | #---------------------------------------------------------------------------- |
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62 | # ERROR-commands - executed when program terminates abnormally |
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63 | #---------------------------------------------------------------------------- |
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64 | EC:[[ \$locat = execution ]] && cat RUN_CONTROL |
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65 | # |
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66 | #---------------------------------------------------------------------------- |
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67 | # OUTPUT-commands - executed when program terminates normally |
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68 | #---------------------------------------------------------------------------- |
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69 | # |
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70 | # Combine 1D- and 3D-profile output (these files are not usable for plotting) |
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71 | OC:[[ -f LIST_PROFIL_1D ]] && cat LIST_PROFIL_1D >> LIST_PROFILE |
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72 | OC:[[ -f LIST_PROFIL ]] && cat LIST_PROFIL >> LIST_PROFILE |
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73 | # |
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74 | # Combine all particle information files |
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75 | OC:[[ -f PARTICLE_INFOS/_0000 ]] && cat PARTICLE_INFOS/* >> PARTICLE_INFO |
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