source: palm/trunk/SCRIPTS/.palm.config.aurora_debug @ 4814

Last change on this file since 4814 was 4814, checked in by gronemeier, 11 months ago

add additional output paths to palm.iofiles and update configuration files accordingly

  • Property svn:keywords set to Id
File size: 3.3 KB
Line 
1#$Id: .palm.config.aurora_debug 4814 2020-12-09 13:08:08Z gronemeier $
2#column 1          column 2
3#name of variable  value of variable (~ must not be used)
4#----------------------------------------------------------------------------
5%base_directory      $HOME/palm/current_version
6%base_data           ~/palm/current_version/JOBS
7%source_path         $HOME/palm/current_version/trunk/SOURCE
8%user_source_path    $base_data/$run_identifier/USER_CODE
9%fast_io_catalog     /scratch/<replace by LUIS username>
10%restart_data_path   /scratch/<replace by LUIS username>
11%output_data_path    $base_data
12%local_jobcatalog    $base_data/$run_identifier/LOG_FILES
13
14%local_ip            130.75.7.130
15%local_username      <replace by LUIS username>
16%defaultqueue        all
17%submit_command      /usr/bin/qsub
18
19%compiler_name       mpinfort
20%compiler_name_ser   mpinfort
21%cpp_options         -fpp -D__parallel -D__nec -D__netcdf -D__netcdf4 -D__netcdf4_parallel -D__fftw -DMPI_REAL=MPI_DOUBLE_PRECISION -DMPI_2REAL=MPI_2DOUBLE_PRECISION
22%make_options        -j 4
23%compiler_options    -O0 -fcheck=all -traceback -ftrace -proginf -report-all -g -Werror -fdiag-vector=0  -I /home/nhbkklau/opt/NetCDF_parallel_nec/include -I /home/nhbkklau/opt/fftw3_nec/include
24%linker_options      -ftrace -L/home/nhbkklau/opt/NetCDF_parallel_nec/lib -lnetcdff -lnetcdf -Wl,-rpath=/home/nhbkklau/opt/NetCDF_parallel_nec/lib -L/home/nhbkklau/opt/hdf5_parallel_nec/lib -lhdf5 -lhdf5_hl -Wl,-rpath=/home/nhbkklau/opt/hdf5_parallel_nec/lib -L/home/nhbkklau/opt/fftw3_nec/lib -lfftw3 -lmpi
25%execute_command     mpirun -v -ve 0  -np {{mpi_tasks}}  ./palm
26%memory              2000
27%login_init_cmd      source /opt/nec/ve/mpi/2.2.0/bin/necmpivars.sh
28
29# BATCH-directives to be used for batch jobs.
30# ATTENTION: The following batch directives still need to be adjusted for the
31#            NEC Aurora system!!!!!!!!!!!!!!
32BD:#!/bin/bash
33#BD:#PBS -A {{project_account}}
34BD:#PBS -N {{run_id}}
35BD:#PBS -l walltime={{cpu_hours}}:{{cpu_minutes}}:{{cpu_seconds}}
36BD:#PBS -l ncpus={{cores}}
37BD:#PBS -l nodes={{nodes}}:ppn={{tasks_per_node}}
38BD:#PBS -l mem={{memory}}mb
39BD:#PBS -W x=PARTITION:lena
40BD:#PBS -o {{job_protocol_file}}
41BD:#PBS -j oe
42BD:#PBS -q {{queue}}
43
44#----------------------------------------------------------------------------
45# INPUT-commands, executed before running PALM - lines must start with "IC:"
46#----------------------------------------------------------------------------
47#IC:ulimit -s unlimited
48IC:export VE_ERRCTL_DEALLOCATE=ABORT
49IC:export VE_FPE_ENABLE=DIV,FOF,INV
50IC:export VE_TRACEBACK=ALL
51
52#----------------------------------------------------------------------------
53# ERROR-commands - executed when program terminates abnormally
54#----------------------------------------------------------------------------
55EC:[[ \$locat = execution ]]  &&  cat  RUN_CONTROL
56EC:[[ \$locat = execution ]]  &&  cat  PARTICLE_INFOS/*
57
58#----------------------------------------------------------------------------
59# OUTPUT-commands - executed when program terminates normally
60#----------------------------------------------------------------------------
61# Combine 1D- and 3D-profile output (these files are not usable for plotting)
62OC:[[ -f LIST_PROFIL_1D     ]]  &&  cat  LIST_PROFIL_1D  >>  LIST_PROFILE
63OC:[[ -f LIST_PROFIL        ]]  &&  cat  LIST_PROFIL     >>  LIST_PROFILE
64
65# Combine all particle information files
66OC:[[ -f PARTICLE_INFOS/_0000 ]]  &&  cat  PARTICLE_INFOS/* >> PARTICLE_INFO
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