1 | #$Id: .palm.config.aurora_debug 4371 2020-01-10 15:23:52Z raasch $ |
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2 | #column 1 column 2 |
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3 | #name of variable value of variable (~ must not be used) |
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4 | #---------------------------------------------------------------------------- |
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5 | %base_data ~/palm/current_version/JOBS |
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6 | %base_directory $HOME/palm/current_version |
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7 | %fast_io_catalog /scratch/<replace by LUIS username> |
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8 | %source_path $HOME/palm/current_version/trunk/SOURCE |
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9 | %user_source_path $base_directory/JOBS/$run_identifier/USER_CODE |
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10 | %local_jobcatalog $HOME/job_queue |
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11 | # |
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12 | %local_ip 130.75.7.130 |
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13 | %local_username <replace by LUIS username> |
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14 | %compiler_name mpinfort |
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15 | %compiler_name_ser mpinfort |
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16 | %cpp_options -fpp -D__parallel -D__nec -D__netcdf -D__netcdf4 -D__netcdf4_parallel -D__fftw -DMPI_REAL=MPI_DOUBLE_PRECISION -DMPI_2REAL=MPI_2DOUBLE_PRECISION |
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17 | %make_options -j 4 |
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18 | %compiler_options -O0 -fcheck=all -traceback -ftrace -proginf -report-all -g -Werror -fdiag-vector=0 -I /home/nhbkklau/opt/NetCDF_parallel_nec/include -I /home/nhbkklau/opt/fftw3_nec/include |
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19 | %linker_options -ftrace -L/home/nhbkklau/opt/NetCDF_parallel_nec/lib -lnetcdff -lnetcdf -Wl,-rpath=/home/nhbkklau/opt/NetCDF_parallel_nec/lib -L/home/nhbkklau/opt/hdf5_parallel_nec/lib -lhdf5 -lhdf5_hl -Wl,-rpath=/home/nhbkklau/opt/hdf5_parallel_nec/lib -L/home/nhbkklau/opt/fftw3_nec/lib -lfftw3 -lmpi |
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20 | #%hostfile auto |
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21 | %defaultqueue all |
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22 | %submit_command /usr/bin/qsub |
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23 | %memory 2000 |
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24 | %login_init_cmd source /opt/nec/ve/mpi/2.2.0/bin/necmpivars.sh |
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25 | %execute_command mpirun -v -ve 0 -np {{mpi_tasks}} ./palm |
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26 | # |
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27 | #---------------------------------------------------------------------------- |
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28 | # INPUT-commands, executed before running PALM - lines must start with "IC:" |
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29 | #---------------------------------------------------------------------------- |
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30 | #IC:ulimit -s unlimited |
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31 | IC:export VE_ERRCTL_DEALLOCATE=ABORT |
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32 | IC:export VE_FPE_ENABLE=DIV,FOF,INV |
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33 | IC:export VE_TRACEBACK=ALL |
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34 | # |
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35 | #---------------------------------------------------------------------------- |
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36 | # ERROR-commands - executed when program terminates abnormally |
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37 | #---------------------------------------------------------------------------- |
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38 | EC:[[ \$locat = execution ]] && cat RUN_CONTROL |
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39 | EC:[[ \$locat = execution ]] && cat PARTICLE_INFOS/* |
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40 | # |
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41 | #---------------------------------------------------------------------------- |
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42 | # OUTPUT-commands - executed when program terminates normally |
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43 | #---------------------------------------------------------------------------- |
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44 | # |
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45 | # Combine 1D- and 3D-profile output (these files are not usable for plotting) |
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46 | OC:[[ -f LIST_PROFIL_1D ]] && cat LIST_PROFIL_1D >> LIST_PROFILE |
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47 | OC:[[ -f LIST_PROFIL ]] && cat LIST_PROFIL >> LIST_PROFILE |
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48 | # |
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49 | # Combine all particle information files |
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50 | OC:[[ -f PARTICLE_INFOS/_0000 ]] && cat PARTICLE_INFOS/* >> PARTICLE_INFO |
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51 | # |
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52 | # BATCH-directives to be used for batch jobs. |
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53 | # ATTENTION: The batch following batch directives still need to be adjusted for the |
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54 | # NEC Aurora system!!!!!!!!!!!!!! |
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55 | BD:#!/bin/bash |
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56 | BD:#PBS -N {{run_id}} |
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57 | BD:#PBS -l walltime={{cpu_hours}}:{{cpu_minutes}}:{{cpu_seconds}} |
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58 | BD:#PBS -l ncpus={{cores}} |
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59 | BD:#PBS -l nodes={{nodes}}:ppn={{tasks_per_node}} |
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60 | BD:#PBS -l mem={{memory}}mb |
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61 | BD:#PBS -W x=PARTITION:lena |
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62 | BD:#PBS -o {{job_protocol_file}} |
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63 | BD:#PBS -j oe |
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64 | BD:#PBS -q {{queue}} |
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